dme-mir-281-2- 12- and 20-way alignments

dme-mir-281-2	chr2R:8057658-8057749 -	Known_mirbase
[View on miRBase]	[View on UCSC Genome Browser {Cornell Mirror}]	intron

Legend:

   mature strand at position 8057713-8057735
   star strand at position 8057669-8057691
   mutations
   read mismatches
   coordinate mismatch (possible incorrect ortholog)

12-way Fast Statistical Aligner re-alignment (From MAFs)

Species	Coordinate	Alignment
dm3	chr2R:8057643-8057764 -	CTT----TCAGATC--CT-CCGCGAATTGTGAAATGAAGAGAGCTATCCGTCGACAGTCAAGTT-A-AGA----CCGATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAACATTCGAAAGGCGACGATTAT
droSim1	chr2R_random:2148106-2148216 -	CCTAGAATCGAATC--CAAATGCGAATAAGTGAATAAAGAGAGCTGTCCGTCGACAGTCCAGAA----AG----CATTTAATATCACTGTCATGGAATTGCTCTCTTTGTATAATATTCGA--------------
droSec1	super_1:5602746-5602867 -	CTT----TCAGATC--CT-CCGCGAATTGTGAAATGAAGAGAGCTATCCGTCGACAGTCAAGTT-A-AGA----CCGATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAACATTCGAAAGGCGACGATTAT
droYak2	chr2R:8893539-8893660 +	CTT----TCAGATC--CC-CCACGAATAGTGAAATGAAGAGAGCTATCCGTCGACAGTCAAGTT-A-ATA----CCAATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAATATTCGAAAGGCGACGATTAG
droEre2	scaffold_4845:17736400-17736521 +	CTT----TCAGATC--CT-CCACGAATTGTGAAATGAAGAGAGCTATCCGTCGACAGTCAAGTT-A-ATA----CCGATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAACATTCGAAAGGCGACGATTAG
droAna3	scaffold_13266:2568923-2569043 +	CGC----AAGGATA--CT-CCACGAATAGTGAAATGAAGAGAGCTATCCGTCGACAGTCAAGTT-A-AAACA--CGGATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAACATTCGAAAGGCGACGAT---
dp4	chr3:418210-418325 -	CTG----TATAATA--CT-GAACGAATAGTGAAATAAAGAGAGCTATCCGTCGACAGTCAAGTT-A-AT-----CAGATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAATATTCGAAAAGCGCCG-----
droPer1	super_2:605107-605222 -	CTG----TATAATA--CT-GAACGAATAGTGAAATAAAGAGAGCTATCCGTCGACAGTCAAGTT-A-AT-----CAGATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAATATTCGAAAAGCGCCG-----
droWil1	scaffold_181141:3242057-3242181 +	A--------CAAAATTGC-ATCCGAATAGCGAAATGAAGAGAGCTATCCGTCGACAGTCCAGTTTA-ATACATCCGAATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAATATTCGAAAATCGACGGTTTT
droVir3	scaffold_12875:19830099-19830214 +	CTA----ACCAAAC--T---TGCGAATAGCGAAATGAAGAGAGCTATCCGTCGACAGTCAAGCT-A--TA----CAGATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAATATTCGAAAAGCGACGAC---
droMoj3	scaffold_6496:6376057-6376162 -	---------------------GCGAATAGCGAAATGAAGAGAGCTATCCGTCGACAGTCAAGTT-ATATA----CATATTTTAATACTGTCATGGAATTGCTCTCTTTGTATAATATTCGAAAATCGACGAT---
droGri2	scaffold_15245:18178375-18178494 +	TTT----CACAACA--AA-TTACGAATAGCGAAATGAAGAGAGCTATCCGTCGACAGTCAAGTT-ATATA----CCGATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAATATTCGAAAAGCGACGAT---

20-way Fast Statistical Aligner re-alignment (Top LASTZ hits)

Species	Coordinate	Lastz Id	Alignment
dm3	chr2R:8057643-8057764 -	NA	CTTTCA---G----ATCCTCCGCGAATTGTGAAATGAAGAGAGCTATCCGTCGACAGTCAAGTT----A-AG--ACCGATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAACATTCGAAAGGCGACGAT--TAT
droSim1	chr2R_random:2148106-2148211 -	4	AATCGA---A----TCCAAATGCGAATAAGTGAATAAAGAGAGCTGTCCGTCGACAGTCCAGA-------AA--GCATTTAATATCACTGTCATGGAATTGCTCTCTTTGTATAATATTCGA----------------
droSec1	super_1:5602746-5602867 -	1	CTTTCA---G----ATCCTCCGCGAATTGTGAAATGAAGAGAGCTATCCGTCGACAGTCAAGTT----A-AG--ACCGATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAACATTCGAAAGGCGACGAT--TAT
droYak2	chr2R:8893539-8893660 +	1	CTTTCA---G----ATCCCCCACGAATAGTGAAATGAAGAGAGCTATCCGTCGACAGTCAAGTT----A-AT--ACCAATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAATATTCGAAAGGCGACGAT--TAG
droEre2	scaffold_4845:17736400-17736520 +	1	CTTTCA---G----ATCCTCCACGAATTGTGAAATGAAGAGAGCTATCCGTCGACAGTCAAGTT----A-AT--ACCGATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAACATTCGAAAGGCGACGAT--TA-
droEug1	scf7180000409462:405955-406077 +	1	GTTCCA---G----ATCCTCCACGAATAGTGAAATGAAGAGAGCTATCCGTCGACAGTCAAGTT----GAAT--ACTGATTATAATACTGTCATGGAATTGCTCTCTTTGTATAACATTCGAAAGGCGACGAT--GAT
droBia1	scf7180000302292:873797-873917 -	2	CTC-CT---G----ATCCTCAGCGAATAGTGAAATGAAGAGAGCTATCCGTCGACAGTCAAGTT----A-AA--ACTGATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAACATTCGAAAGGCGACGAT--GAT
droTak1	scf7180000415260:184315-184436 +	1	GCTCCT---G----ATCCACCGCGAATAGTGAAATGAAGAGAGCTATCCGTCGACAGTCAAGTT----A-AA--ACTGATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAACATTCGAAAGGCGACGAT--GAT
droEle1	scf7180000491214:3592750-3592874 -	1	ATCCCAAAGG----ACTTCCCACGAATAGTGAAATGAAGAGAGCTATCCGTCGACAGTCAAGTT----A-AA--ACTGATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAACATTCGAAAGGCGACGAT--TTC
droRho1	scf7180000779932:497242-497365 -	1	TCCGAA-AGG----ACTCTCCACGAATAGTGAAATGAAGAGAGCTATCCGTCGACAGTCAAGTT----A-AA--ACTGATCGTAATACTGTCATGGAATTGCTCTCTTTGTATAACATTCGAAAGGCGACGAT--ATC
droFic1	scf7180000453809:453495-453612 -	1	AG-------G----ACTCTCCACGAATAGTGAAATGAAGAGAGCTATCCGTCGACAGTCAAGTT----A-AA--ACTGATAGTAATACTGTCATGGAATTGCTCTCTTTGTATAACATTCGAAAGGCGACGAT--GAT
droKik1	scf7180000302367:392665-392778 +	2	T----------------CTCCACGAATAGTGAAATGAAGAGAGCTATCCGTCGACAGTCAAGTT----A-AA--GCAGATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAACATTCGAAAGGCGACGAC--AAT
droAna3	scaffold_13266:2568922-2569043 +	1	CCGCAA--GG----ATACTCCACGAATAGTGAAATGAAGAGAGCTATCCGTCGACAGTCAAGTT----A-AAACACGGATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAACATTCGAAAGGCGACGAT-----
droBip1	scf7180000396759:1630201-1630321 +	1	GCCCCA-AGG----ATACTCCACGAATAGTGAAATGAAGAGAGCTATCCGTCGACAGTCAAGTT----A-AA--ACGGATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAACATTCGAAAGGCGACGAT-----
dp4	chr3:418209-418322 -	2	TAT------A----ATACTGAACGAATAGTGAAATAAAGAGAGCTATCCGTCGACAGTCAAGTT----A-A---TCAGATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAATATTCGAAAAGCGCCGA------
droPer1	super_2:605106-605226 -	2	TTTTCT---GTATAATACTGAACGAATAGTGAAATAAAGAGAGCTATCCGTCGACAGTCAAGTT----A-A---TCAGATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAATATTCGAAAAGCGCCGA------
droWil1	scaffold_181141:3242068-3242181 +	1	TC--------------------CGAATAGCGAAATGAAGAGAGCTATCCGTCGACAGTCCAGTTTAATACAT--CCGAATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAATATTCGAAAATCGACGGT--TTT
droVir3	scaffold_12875:19830099-19830219 +	2	CTAACC---A----AAC--TTGCGAATAGCGAAATGAAGAGAGCTATCCGTCGACAGTCAAGCT----A--T--ACAGATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAATATTCGAAAAGCGACGACTTTAT
droMoj3	scaffold_6496:6376053-6376173 -	2	CCCTCA---G----T---TCTGCGAATAGCGAAATGAAGAGAGCTATCCGTCGACAGTCAAGTT----ATAT--ACATATTTTAATACTGTCATGGAATTGCTCTCTTTGTATAATATTCGAAAATCGACGAT-ATAT
droGri2	scaffold_15245:18178374-18178494 +	1	GTTTCA---C---AACAAATTACGAATAGCGAAATGAAGAGAGCTATCCGTCGACAGTCAAGTT----ATAT--ACCGATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAATATTCGAAAAGCGACGAT-----

[View All Possible Orthologs]

Original 12-way multiz alignment with reads super-imposed

Species

Alignment

dm3

CTT----TCAGATC--CT-CCGCGAATTGTGAAATGAAGAGAGCTATCCGTCGACAGTCAAGTT-A-AGA----CCGATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAACATTCGAAAGGCGACGATTAT

Size

Hit Count

Total Norm

droSim1

CCTAGAATCGAATC--CAAATGCGAATAAGTGAATAAAGAGAGCTGTCCGTCGACAGTCCAGAA----AG----CATTTAATATCACTGTCATGGAATTGCTCTCTTTGTATAATATTCGA--------------	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
....................................AAGAGAGCTATCCGTCGACAGT.............................................................................	22	2	146837.00	116.50	27695.00	108315.00	10710.50
....................................AAGAGAGCTATCCGTCGACAGTC............................................................................	23	2	139187.50	549.00	25205.00	96585.00	16848.50
....................................AAGAGAGCTATCCGTCGACAG..............................................................................	21	2	49327.50	19.00	9123.50	38262.00	1923.00
....................................AAGAGAGCTATCCGTCGACAGG.............................................................................	22	2	17826.00	1.00	2579.50	13567.50	1678.00
....................................AAGAGAGCTATCCGTCGACAGC.............................................................................	22	2	11163.50	0.50	2653.50	7642.00	867.50
......................................................................................CTGTCATGGAATTGCTCTCTTTG..........................	23	2	5520.50	530.00	719.50	3049.50	1221.50
....................................AAGAGAGCTATCCGTCGACAGTT............................................................................	23	2	4826.00	18.50	719.50	3822.00	266.00
....................................AAGAGAGCTATCCGTCGACA...............................................................................	20	2	4793.00	2.00	888.50	3834.50	68.00
...................................AAAGAGAGCTGTCCGTCGAC................................................................................	20	2	3289.00	0.00	920.50	2296.00	72.50
....................................AAGAGAGCTATCCGTCGAC................................................................................	19	2	2733.00	0.50	624.00	2074.00	34.50
...................................AAAGAGAGCTGTCCGTCGACAG..............................................................................	22	2	2357.00	134.00	444.50	1567.50	211.00
.......................................................................................TGTCATGGAATTGCTCTCTTTG..........................	22	2	1813.50	213.50	249.50	1140.50	210.00
...................................AAAGAGAGCTGTCCGTCGACA...............................................................................	21	2	1468.00	2.00	327.00	1090.50	48.50
....................................AAGAGAGCTATCCGTCGACAGTCT...........................................................................	24	2	1428.00	31.50	237.50	1062.50	96.50
....................................AAGAGAGCTATCCGTCGACAGTCA...........................................................................	24	2	1148.50	12.50	200.00	726.50	209.50
....................................AAGAGAGCTATCCGTCGACAGTCC...........................................................................	24	2	1021.50	3.50	130.00	767.50	120.50
........................................GAGCTATCCGTCGACAGTC............................................................................	19	2	917.00	0.00	147.50	595.50	174.00
.......................................................................................TGTCATGGAATTGCTCTCTTTGT.........................	23	2	756.50	199.50	81.00	322.50	153.50
....................................AAGAGAGCTATCCGTCGACAC..............................................................................	21	2	688.00	0.00	184.50	477.50	26.00
....................................AAGAGAGCTATCCGTCGACAGTA............................................................................	23	2	592.00	2.50	128.50	413.00	48.00
.....................................AGAGAGCTATCCGTCGACAGTC............................................................................	22	2	584.00	2.00	187.50	343.00	51.50
......................................................................................CTGTCATGGAATTGCTCTCTTT...........................	22	2	579.00	4.00	91.00	459.50	24.50
....................................AAGAGAGCTATCCGTCGACAGAC............................................................................	23	2	547.50	0.00	117.50	364.00	66.00
...................................AAAGAGAGCTGTCCGTCGACAGT.............................................................................	23	2	521.50	293.50	37.50	139.00	51.50
........................................GAGCTATCCGTCGACAGT.............................................................................	18	2	520.50	0.00	88.50	373.50	58.50
......................................................................................CTGTCATGGAATTGCTCTCTT............................	21	2	429.00	0.50	117.00	288.50	23.00
......................................................................................CTGTCATGGAATTGCTCTCT.............................	20	2	393.50	0.00	92.00	236.50	65.00
.....................................AGAGAGCTATCCGTCGACAGT.............................................................................	21	2	392.50	0.00	141.50	236.50	14.50
......................................................................................CTGTCATGGAATTGCTCTCTTTGA.........................	24	2	354.50	11.50	96.00	214.00	33.00
....................................AAGAGGGCTATCCGTCGACAGT.............................................................................	22	2	302.00	0.00	50.00	226.50	25.50
....................................AAGAGGGCTATCCGTCGACAGTC............................................................................	23	2	299.00	1.00	41.50	213.50	43.00
....................................AAGAGAGCTATCCGTCGACGG..............................................................................	21	2	294.50	0.00	34.50	248.00	12.00
....................................AAGAGAGCTATCCGTCGACAGCC............................................................................	23	2	269.50	1.50	40.00	193.50	34.50
....................................AAGGGAGCTATCCGTCGACAGT.............................................................................	22	2	255.00	0.00	44.50	191.50	19.00
....................................AAGGGAGCTATCCGTCGACAGTC............................................................................	23	2	235.00	0.00	34.50	177.50	23.00
.......................................................................................TGTCATGGAATTGCTCTCTTTGC.........................	23	2	224.00	7.00	37.00	139.00	41.00
....................................AAGAGAGCTATCCGTCGACG...............................................................................	20	2	196.00	0.00	24.00	168.00	4.00
....................................AGGAGAGCTATCCGTCGACAGTC............................................................................	23	2	191.00	0.00	33.00	131.50	26.50
....................................AATAGAGCTATCCGTCGACAGTC............................................................................	23	2	187.00	0.00	34.50	112.50	40.00
.......................................................................................TGTCATGGAATTGCTCTCTTT...........................	21	2	182.00	10.50	26.00	144.00	1.50
....................................AGGAGAGCTATCCGTCGACAGT.............................................................................	22	2	181.50	0.00	33.00	134.00	14.50
....................................AAGAGAGCTACCCGTCGACAGTC............................................................................	23	2	164.00	0.00	26.00	114.00	24.00
....................................AAGAGAGCTATCCGTCGACT...............................................................................	20	2	160.00	0.00	37.50	121.00	1.50
....................................AAGAGATCTATCCGTCGACAGTC............................................................................	23	2	150.50	0.00	22.50	102.50	25.50
....................................AAGAGAGCTACCCGTCGACAGT.............................................................................	22	2	146.00	0.00	23.00	109.50	13.50
....................................AAGAGAGCTATCCGTCGACAGTCG...........................................................................	24	2	131.50	0.50	21.50	84.50	25.00
....................................AATAGAGCTATCCGTCGACAGT.............................................................................	22	2	129.50	0.00	26.00	79.50	24.00
.......................................................................................TGTCATGGAATTGCTCTCT.............................	19	2	124.00	0.00	32.00	76.00	16.00
.......................................................................................TGTCATGGAATTGCTCTCTT............................	20	2	121.50	0.00	26.50	83.00	12.00
....................................AAGAGATCTATCCGTCGACAGT.............................................................................	22	2	120.50	0.00	33.50	76.00	11.00
....................................AAGAGAGCCATCCGTCGACAGT.............................................................................	22	2	118.50	0.00	18.00	92.50	8.00
....................................AAGAGAGCTATCCGCCGACAGTC............................................................................	23	2	116.50	2.50	15.00	87.00	12.00
.......................................................................................TGTCATGGAATTGCTCTCTTTGA.........................	23	2	110.50	27.00	26.50	51.00	6.00
....................................AAGAGAGCCATCCGTCGACAGTC............................................................................	23	2	109.00	1.50	17.00	74.50	16.00
...................................AAAGAGAGCTGTCCGTCGACT...............................................................................	21	2	106.00	0.00	25.00	80.00	1.00
....................................AAGAGAGCTATCCGCCGACAGT.............................................................................	22	2	104.00	0.00	20.00	74.00	10.00
...................................GAAGAGAGCTATCCGTCGACAGT.............................................................................	23	2	97.00	0.00	7.50	57.00	32.50
....................................AAGGGAGCTATCCGTCGACAG..............................................................................	21	2	92.00	0.00	15.00	73.50	3.50
....................................AAGAGAGCTATCCGTCGACAGTCAA..........................................................................	25	2	89.00	1.00	4.50	19.50	64.00
....................................AAGAGAGCTGTCCGTCGACAGT.............................................................................	22	2	88.00	3.00	12.00	66.50	6.50
....................................AAGAGAGCTATCCGTCGGCAGTC............................................................................	23	2	88.00	2.50	15.00	58.50	12.00
....................................AAGAGAGCTATCCGTCGGCAGT.............................................................................	22	2	87.50	1.00	12.00	64.50	10.00
....................................AAGAGGGCTATCCGTCGACAG..............................................................................	21	2	87.50	0.00	15.00	69.50	3.00
....................................AAGATAGCTATCCGTCGACAGTC............................................................................	23	2	83.00	0.00	16.00	54.00	13.00
....................................AAGAGACCTATCCGTCGACAGTC............................................................................	23	2	81.50	0.50	12.50	46.00	22.50
....................................AAGAGAGCTATCCGTCGACAGGC............................................................................	23	2	79.50	3.00	12.00	58.50	6.00
....................................AACAGAGCTATCCGTCGACAGTC............................................................................	23	2	79.50	0.00	23.50	40.50	15.50
.......................................................................................TGTCATGGAATTGCTCTCTTTGG.........................	23	2	77.50	0.00	9.00	43.50	25.00
....................................AAGAGAGCTGTCCGTCGACAGTC............................................................................	23	2	75.00	7.50	12.00	44.50	11.00
....................................AAGAGAGCTATCCGGCGACAGT.............................................................................	22	2	74.50	0.50	13.00	59.00	2.00
....................................AAGAGAGCTATCCGGCGACAGTC............................................................................	23	2	71.00	1.50	8.50	59.50	1.50
....................................GAGAGAGCTATCCGTCGACAGTC............................................................................	23	2	70.50	0.00	9.00	53.00	8.50
....................................AAGAGAGCTATCCGTCGACAA..............................................................................	21	2	69.50	0.00	14.50	49.50	5.50
....................................AAGAGAGCTATCCGTCAACAGTC............................................................................	23	2	68.00	0.50	10.00	52.00	5.50
....................................AACAGAGCTATCCGTCGACAGT.............................................................................	22	2	67.50	0.00	13.00	42.00	12.50
....................................AGGAGAGCTATCCGTCGACAG..............................................................................	21	2	67.00	0.00	8.50	56.00	2.50
........................................GAGCTATCCGTCGACAGG.............................................................................	18	2	66.00	0.00	9.50	51.50	5.00
....................................AAGAGAGCTATCTGTCGACAGTC............................................................................	23	2	62.50	2.50	8.50	45.00	6.50
....................................AAGAGACCTATCCGTCGACAGT.............................................................................	22	2	61.00	0.00	12.00	43.00	6.00
.....................................AGAGAGCTATCCGTCGACAG..............................................................................	20	2	60.50	0.00	19.50	40.50	0.50
....................................AAGAGAGCTATCCATCGACAGT.............................................................................	22	2	60.50	0.00	12.50	43.00	5.00
....................................AAGAGAGCTATCTGTCGACAGT.............................................................................	22	2	60.50	0.00	10.50	49.00	1.00
....................................AAGAGAGCTGTCCGTCGACAG..............................................................................	21	2	59.50	0.00	16.00	42.50	1.00
....................................AAGAGAGCTATCAGTCGACAGT.............................................................................	22	2	59.50	0.50	7.00	50.50	1.50
......................................................................................CTGTCATGGAATTGCTCTCTTTGG.........................	24	2	59.50	0.00	11.50	40.00	8.00
...................................AAAGAGAGCTGTCCGTCGACG...............................................................................	21	2	57.50	0.00	12.00	44.50	1.00
....................................AAGAGAGCTATCCATCGACAGTC............................................................................	23	2	57.50	2.00	10.00	34.50	11.00
....................................GAGAGAGCTATCCGTCGACAGT.............................................................................	22	2	55.00	0.00	9.00	40.50	5.50
......................................................................................CTGTCATGGAATTGCTCTCTTTT..........................	23	2	55.00	4.00	8.50	40.00	2.50
.......................................AGAGCTATCCGTCGACAGTC............................................................................	20	2	54.50	0.00	8.50	31.50	14.50
.....................................AGAGAGCTATCCGTCGACAGG.............................................................................	21	2	54.00	0.00	24.00	28.50	1.50
....................................AAGAGAGCTATACGTCGACAGT.............................................................................	22	2	52.50	0.00	3.00	49.50	0.00
.......................................................................................TGTCATGGAATTGCTCTCTTTGTA........................	24	2	52.50	3.00	7.00	21.00	21.50
.......................................................................................TGTCATGGAATTGCTCTCTTTGTT........................	24	2	52.00	1.00	11.00	26.00	14.00
....................................AAGAGAGCTATCCGTCAACAGT.............................................................................	22	2	50.00	1.00	8.50	37.00	3.50
....................................AAGAGAGCTATCAGTCGACAGTC............................................................................	23	2	49.50	2.00	6.00	37.50	4.00
......................................AAGAGCTATCCGTCGACAGTC............................................................................	21	2	48.50	0.00	14.00	24.50	10.00
..................................TGAAGAGAGCTATCCGTCGACA...............................................................................	22	2	48.50	0.50	10.00	34.00	4.00
....................................AAGAGAGCTATCCGTCGACAGA.............................................................................	22	2	47.50	0.00	8.00	34.00	5.50
....................................AAGAGAGCTATTCGTCGACAGTC............................................................................	23	2	47.00	2.00	8.50	33.00	3.50
....................................AAGAGAGCTATCCGTCTACAGTC............................................................................	23	2	46.50	0.00	6.00	33.00	7.50

droSec1

CTT----TCAGATC--CT-CCGCGAATTGTGAAATGAAGAGAGCTATCCGTCGACAGTCAAGTT-A-AGA----CCGATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAACATTCGAAAGGCGACGATTAT	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
....................................AAGAGAGCTATCCGTCGACAGTC............................................................................	23	2	23197.00	19740.00	1968.50	1488.50
....................................AAGAGAGCTATCCGTCGACAGT.............................................................................	22	2	22362.00	20768.50	604.00	989.50
......................................................................................CTGTCATGGAATTGCTCTCTTTG..........................	23	2	14980.50	10786.00	3021.00	1173.50
.......................................................................................TGTCATGGAATTGCTCTCTTTG..........................	22	2	12173.00	9628.50	1629.50	915.00
.......................................................................................TGTCATGGAATTGCTCTCTTTGT.........................	23	2	11709.00	9175.50	1776.00	757.50
....................................AAGAGAGCTATCCGTCGACAG..............................................................................	21	2	3987.00	3661.00	61.50	264.50
.......................................................................................TGTCATGGAATTGCTCTCTTT...........................	21	2	3049.50	2762.50	73.50	213.50
....................................AAGAGAGCTATCCGTCGACA...............................................................................	20	2	2842.00	2724.00	12.00	106.00
....................................AAGAGAGCTATCCGTCGACAGTCT...........................................................................	24	2	2337.50	2134.50	33.50	169.50
......................................................................................CTGTCATGGAATTGCTCTCTTT...........................	22	2	2152.50	1908.50	70.00	174.00
.......................................................................................TGTCATGGAATTGCTCTCTTTGC.........................	23	2	2129.00	1902.50	141.00	85.50
....................................AAGAGAGCTATCCGTCGACAGTT............................................................................	23	2	2105.50	1909.00	14.50	182.00
.......................................................................................TGTCATGGAATTGCTCTCTTTGA.........................	23	2	1247.00	815.50	83.00	348.50
....................................AAGAGAGCTATCCGTCGACAGTCC...........................................................................	24	2	791.00	710.50	37.50	43.00
......................................................................................CTGTCATGGAATTGCTCTCTT............................	21	2	481.00	445.00	9.00	27.00
....................................AAGAGAGCTATCCGTCGACAGA.............................................................................	22	2	450.50	438.00	1.00	11.50
......................................................................................CTGTCATGGAATTGCTCTCTTTGT.........................	24	2	403.50	353.50	20.50	29.50
......................................................................................CTGTCATGGAATTGCTCTCTTTGA.........................	24	2	320.00	158.00	32.50	129.50
.......................................................................................TGTCATGGAATTGCTCTCTTTGTT........................	24	2	290.00	236.50	39.00	14.50
....................................AAGAGAGCTATCCGTCGACAGTCA...........................................................................	24	1	558.00	468.00	55.00	35.00
........................................................................................GTCATGGAATTGCTCTCTTTGT.........................	22	2	269.00	229.50	20.00	19.50
.......................................................................................TGTCATGGAATTGCTCTCTTTT..........................	22	2	242.00	218.50	4.50	19.00
......................................................................................CTGTCATGGAATTGCTCTCTTTT..........................	23	2	235.50	203.00	10.00	22.50
.......................................................................................TGTCATGGAATTGCTCTCTT............................	20	2	210.00	194.00	2.50	13.50
....................................AAGAGAGCTGTCCGTCGACAGT.............................................................................	22	2	181.00	124.00	34.00	23.00
....................................AAGAGAGCTATCCGTCGAAAGT.............................................................................	22	2	181.00	178.50	0.00	2.50
....................................AAGAGAGCTATCCGTCGAAAGTC............................................................................	23	2	172.50	168.50	0.50	3.50
....................................AAGAGAGCTATCCGTCGAC................................................................................	19	2	151.00	135.00	2.00	14.00
....................................AAGAGAGCTATCCGTCGATAGTC............................................................................	23	2	144.00	111.00	32.00	1.00
....................................AAGAGAGCTGTCCGTCGACAGTC............................................................................	23	2	132.00	94.50	23.00	14.50
....................................AAGAGAGCTATCCGTCGATAGT.............................................................................	22	2	127.50	119.00	8.00	0.50
.......................................................................................TGTCATGGAATTGCTCTCTTTGTA........................	24	2	116.00	75.00	33.00	8.00
......................................................................................CTGTCATGGAATTGCTCTCT.............................	20	2	108.00	100.00	2.50	5.50
.....................................AGAGAGCTGTCCGTCGACAGT.............................................................................	21	2	104.50	80.00	13.50	11.00
.....................................AGAGAGCTGTCCGTCGACAGTC............................................................................	22	2	103.00	55.00	27.00	21.00
....................................AAGAGAGCTATCCGTCGACAGTA............................................................................	23	2	98.00	85.50	2.00	10.50
.......................................................................................TGTCATGGAATTGCTCTCCTTGT.........................	23	2	88.00	83.00	4.00	1.00
....................................AAGAGAGCTATCCGTCGACAGTTT...........................................................................	24	1	175.00	166.00	0.00	9.00
....................................AAGAGAGCTATCCGTCGAGAGT.............................................................................	22	2	87.00	87.00	0.00	0.00
.......................................................................................TGTCATGGAATTGCTCTCCTTG..........................	22	2	83.50	77.00	4.00	2.50
......................................................................................CTGTCATGGAATTGCTCTATTTG..........................	23	2	81.50	80.00	0.50	1.00
....................................AAGAGAGCTATCCGTCGAGAGTC............................................................................	23	2	81.50	81.50	0.00	0.00
.......................................................................................TGTCATGGAATTGCTCTCATTG..........................	22	2	73.50	72.00	0.50	1.00
....................................AAGAGAGCTATCCGTCGACAGC.............................................................................	22	2	73.00	67.50	3.00	2.50
.....................................AGAGAGCTATCCGTCGACAGTC............................................................................	22	2	70.00	52.50	9.50	8.00
....................................AAGAGAGCTATCCGTCGACT...............................................................................	20	2	63.50	58.50	0.00	5.00
......................................................................................CTGTCATGGAATTGCTCTTTTTG..........................	23	2	60.50	49.50	10.50	0.50
.......................................................................................TGTCATGGAATTGCTCTCATTGT.........................	23	2	59.50	58.50	0.00	1.00
......................................................................................CTGTCATGGAATTGCTCTCTTTGC.........................	24	2	51.50	45.00	4.00	2.50
....................................AAGAGAGCTATCCGTCGACAGCC............................................................................	23	2	51.00	43.00	5.50	2.50
....................................AAGAGAGCTGTCCGTCGACAG..............................................................................	21	2	46.50	30.00	10.00	6.50
....................................AAGAGAGCTATCCGTCTACAGTC............................................................................	23	2	45.00	40.00	2.50	2.50
....................................AAGAGAGCTATCCGTCGACAGTCCA..........................................................................	25	2	43.00	40.00	0.50	2.50
...................................................................................ATACTGTCATGGAATTGCTCTCT.............................	23	1	78.00	73.00	2.00	3.00
.......................................................................................TGTCATGGAATTGCTCTCGTTG..........................	22	2	36.50	36.50	0.00	0.00
........................................................................................GTCATGGAATTGCTCTCTTTG..........................	21	2	35.50	32.00	2.00	1.50
.......................................................................................TGTCATGGAATTGCTCTCGTTGT.........................	23	2	33.50	33.50	0.00	0.00
....................................AAGAGAGCTACCCGTCGACAGTC............................................................................	23	2	32.50	25.00	4.50	3.00
....................................AAGAGAGCTATCCGTCGACAGTCCT..........................................................................	25	2	32.00	28.50	1.00	2.50
....................................AAGAGAGCTATCCGTCTACAGT.............................................................................	22	2	31.50	29.00	0.00	2.50
......................................................................................CTGTCATGGAATTGCTCTGTTTG..........................	23	2	31.00	31.00	0.00	0.00
....................................AAGAGAGCTATCCGTCGAAAG..............................................................................	21	2	29.00	28.50	0.00	0.50
.....................................AGAGAGCTATCCGTCGACAGT.............................................................................	21	2	28.50	25.00	0.50	3.00
....................................AAGGGAGCTATCCGTCGACAGT.............................................................................	22	2	28.00	26.50	1.00	0.50
......................................................................................CTGCCATGGAATTGCTCTCTTTG..........................	23	2	27.50	23.00	4.00	0.50
......................................................................................CTGTCATGGAATTGCTCTCTTTA..........................	23	2	26.50	23.00	1.50	2.00
....................................AAGAGAGCTATCCGTCGATAG..............................................................................	21	2	26.50	26.50	0.00	0.00
....................................AAGAGAGCCATCCGTCGACAGT.............................................................................	22	2	26.00	25.00	0.50	0.50
....................................AAGAGAGCTATCCGCCGACAGT.............................................................................	22	2	26.00	24.50	0.50	1.00
.......................................................................................TGTCATGGAATTGCTCTCCTT...........................	21	2	25.50	25.50	0.00	0.00
....................................AAGAGGGCTATCCGTCGACAGTC............................................................................	23	2	25.00	18.50	4.50	2.00
....................................AAGAGAGCTATCCGTCGACCGT.............................................................................	22	2	25.00	23.00	1.50	0.50
......................................................................................CTGTCATGGGATTGCTCTCTTTG..........................	23	2	24.50	15.50	9.00	0.00
....................................AAGAGAGCTATCCGTCCACAGTC............................................................................	23	2	24.00	22.00	2.00	0.00
....................................AAGAGAGCTATCCGTCGAAA...............................................................................	20	2	24.00	24.00	0.00	0.00
......................................................................................CTGTCATGGAATTGCTCTCCTTG..........................	23	2	23.50	15.50	7.50	0.50
....................................AAGAGAGCTATCCGTTGACAGTC............................................................................	23	2	23.50	16.50	6.00	1.00
....................................AAGAGAGCTATCTGTCGACAGTC............................................................................	23	2	23.50	12.50	9.50	1.50
....................................AAGGGAGCTATCCGTCGACAGTC............................................................................	23	2	23.50	17.50	5.00	1.00
......................................AAGAGCTATCCGTCGACAGTC............................................................................	21	2	23.00	17.00	4.50	1.50
....................................AAGAGAGCTACCCGTCGACAGT.............................................................................	22	2	22.50	22.50	0.00	0.00
....................................AAGAGAGCTATCCGCCGACAGTC............................................................................	23	2	22.00	19.00	2.50	0.50
.......................................................................................TGTCATGGAATTGCTCTCTTTA..........................	22	2	22.00	20.50	0.00	1.50
.......................................................................................TGTCATGGAATTGCTCTCATT...........................	21	2	21.50	21.00	0.00	0.50
......................................................................................CTGTCATGGAATTGCTCTCTTTC..........................	23	2	21.00	19.00	1.50	0.50
.......................................................................................TGTCATGGAATTGCTCTCCTTGC.........................	23	2	21.00	19.50	1.00	0.50
...................................GAAGAGAGCTATCCGTCGACAGT.............................................................................	23	1	41.00	33.00	7.00	1.00
....................................ACGAGAGCTATCCGTCGACAGT.............................................................................	22	2	20.50	19.50	1.00	0.00
......................................................................................CTGTCATGGAGTTGCTCTCTTTG..........................	23	2	20.50	11.00	8.00	1.50
.........................................................................................TCATGGAATTGCTCTCTTTGTA........................	22	2	20.50	16.50	3.50	0.50
....................................AAGAGGGCTATCCGTCGACAGT.............................................................................	22	2	20.50	19.00	1.00	0.50
.......................................................................................TGTCATGGGATTGCTCTCTTTG..........................	22	2	20.50	14.50	4.50	1.50
....................................AAGAGAGCTATCCGTCGACACTC............................................................................	23	2	20.50	19.00	1.00	0.50
....................................AAGAGAGCTATCCGTCGAAAGTCT...........................................................................	24	1	41.00	39.00	0.00	2.00
......................................................................................CTGTCATGGAATTGCTCCCTTTG..........................	23	2	20.00	15.50	4.00	0.50
....................................AAGAGAGCTATCCCTCGACAGTC............................................................................	23	2	20.00	16.00	2.50	1.50
....................................AGGAGAGCTATCCGTCGACAGTC............................................................................	23	2	19.50	16.50	1.00	2.00
....................................AAGAGAGCTATCTGTCGACAGT.............................................................................	22	2	19.50	14.00	4.00	1.50
....................................AATAGAGCTATCCGTCGACAGT.............................................................................	22	2	19.50	15.50	0.50	3.50
....................................AAGATAGCTATCCGTCGACAGTC............................................................................	23	2	19.50	16.50	1.50	1.50
....................................AAGAGAGCTATCCCTCGACAGT.............................................................................	22	2	18.50	17.50	1.00	0.00

droYak2

CTT----TCAGATC--CC-CCACGAATAGTGAAATGAAGAGAGCTATCCGTCGACAGTCAAGTT-A-ATA----CCAATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAATATTCGAAAGGCGACGATTAG	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
....................................AAGAGAGCTATCCGTCGACAGTC............................................................................	23	2	20876.00	319.00	195.00	7361.00	406.50	12594.50
....................................AAGAGAGCTATCCGTCGACAGT.............................................................................	22	2	13363.00	62.50	74.50	4226.50	153.00	8846.50
......................................................................................CTGTCATGGAATTGCTCTCTTTG..........................	23	2	5871.50	357.00	115.50	4769.00	271.50	358.50
....................................AAGAGAGCTATCCGTCGACAG..............................................................................	21	2	5137.00	9.00	24.50	1096.00	58.00	3949.50
.......................................................................................TGTCATGGAATTGCTCTCTTTG..........................	22	2	3975.50	70.00	85.50	3578.00	182.50	59.50
.......................................................................................TGTCATGGAATTGCTCTCTTTGT.........................	23	2	3032.00	175.00	87.00	2546.50	184.50	39.00
....................................AAGAGAGCTATCCGTCGACAGTCT...........................................................................	24	2	2378.50	11.50	12.50	1953.50	39.00	362.00
.......................................................................................TGTCATGGAATTGCTCTCTTT...........................	21	2	1029.00	2.00	24.00	959.50	39.50	4.00
....................................AAGAGAGCTATCCGTCGACAGC.............................................................................	22	2	1027.00	0.00	0.00	22.50	1.50	1003.00
....................................AAGAGAGCTATCCGTCGACAGG.............................................................................	22	2	988.00	0.00	0.00	1.00	1.50	985.50
....................................AAGAGAGCTATCCGTCGACA...............................................................................	20	2	928.00	2.00	13.00	610.00	21.00	282.00
....................................AAGAGAGCTATCCGTCGACAGTT............................................................................	23	2	831.00	2.50	2.50	405.00	11.50	409.50
......................................................................................CTGTCATGGAATTGCTCTCTTT...........................	22	2	682.00	4.50	13.00	613.50	34.50	16.50
.......................................................................................TGTCATGGAATTGCTCTCTTTGC.........................	23	2	579.00	5.00	13.00	515.50	26.00	19.50
......................................................................................CTGTCATGGAATTGCTCTCTT............................	21	2	334.00	1.50	6.50	279.00	12.50	34.50
....................................AAGAGAGCTATCCGTCGACAGTCC...........................................................................	24	2	245.50	1.00	2.00	115.50	7.00	120.00
....................................AAGAGAGCTATCCGTCGACAGTCA...........................................................................	24	1	376.00	6.00	4.00	214.00	3.00	149.00
....................................AAGAGAGCTATCCGTCGAC................................................................................	19	2	168.00	0.00	1.00	35.50	2.50	129.00
.......................................................................................TGTCATGGAATTGCTCTCTTTGTT........................	24	2	153.50	4.50	2.00	132.00	5.00	10.00
......................................................................................CTGTCATGGAATTGCTCTCTTTGT.........................	24	2	127.50	3.50	3.00	101.50	8.50	11.00
......................................................................................CTGTCATGGAATTGCTCTCT.............................	20	2	114.50	0.00	2.50	86.50	3.50	22.00
.......................................................................................TGTCATGGAATTGCTCTCTT............................	20	2	112.50	0.00	2.00	100.00	6.50	4.00
.......................................................................................TGTCATGGAATTGCTCTCTTTGA.........................	23	2	112.00	4.00	2.00	99.00	5.00	2.00
......................................................................................CTGTCATGGAATTGCTCTCTTTT..........................	23	2	100.00	5.50	13.50	69.50	10.50	1.00
.......................................................................................TGTCATGGAATTGCTCTCTTTT..........................	22	2	90.50	0.00	6.50	79.00	5.00	0.00
....................................AAGAGAGCTATCCGTCGACAC..............................................................................	21	2	89.50	0.00	0.00	3.00	1.00	85.50
....................................AAGAGAGCTATCCGTCGACAGAC............................................................................	23	2	77.00	0.00	0.00	1.50	0.50	75.00
.....................................AGAGAGCTATCCGTCGACAGTC............................................................................	22	2	70.50	1.00	0.00	19.00	2.00	48.50
........................................................................................GTCATGGAATTGCTCTCTTTGT.........................	22	2	63.50	2.50	1.00	57.00	3.00	0.00
........................................GAGCTATCCGTCGACAGTC............................................................................	19	2	61.00	0.00	0.00	1.50	0.00	59.50
....................................AAGAGAGCTATCCGTCGACAGCC............................................................................	23	2	54.50	1.00	0.50	33.50	7.00	12.50
....................................AAGAGAGCTATCCGTCGACAGTA............................................................................	23	2	50.50	1.50	1.50	21.00	1.50	25.00
....................................AAGAGAGCTGTCCGTCGACAGTC............................................................................	23	2	43.50	3.50	0.50	29.50	5.00	5.00
....................................AAGAGGGCTATCCGTCGACAGTC............................................................................	23	2	36.00	0.00	0.50	8.50	0.50	26.50
....................................AAGAGAGCTGTCCGTCGACAGT.............................................................................	22	2	35.00	3.00	0.50	26.00	0.50	5.00
......................................................................................CTGTCATGGAATTGCTCTCTTTGA.........................	24	2	34.00	2.50	1.50	18.00	0.50	11.50
.....................................AGAGAGCTGTCCGTCGACAGTC............................................................................	22	2	33.00	3.50	4.00	22.00	3.50	0.00
....................................AAGGGAGCTATCCGTCGACAGTC............................................................................	23	2	30.50	1.50	0.00	7.50	0.50	21.00
....................................AAGAGAGCTATCCGTCGACCGTC............................................................................	23	2	29.50	2.00	2.50	2.00	2.50	20.50
.....................................AGAGAGCTGTCCGTCGACAGT.............................................................................	21	2	28.50	1.00	3.50	21.50	2.50	0.00
....................................AAGAGAGCTATCCGTCGACCGT.............................................................................	22	2	28.50	0.00	1.50	5.00	3.50	18.50
....................................AAGAGAGCTATCCGTCGACATTC............................................................................	23	2	25.50	0.50	0.50	16.00	1.50	7.00
.......................................................................................TGTCATGGAATTGCTCTCTTTGTA........................	24	2	25.50	1.50	0.50	23.00	0.00	0.50
........................................GAGCTATCCGTCGACAGT.............................................................................	18	2	25.50	0.00	0.00	0.00	0.00	25.50
....................................AAGAGAGCTATCCGTCGACAGA.............................................................................	22	2	25.00	0.00	0.00	20.00	0.50	4.50
.....................................AGAGAGCTATCCGTCGACAGT.............................................................................	21	2	24.50	0.00	0.00	4.50	0.00	20.00
....................................AAGAGGGCTATCCGTCGACAGT.............................................................................	22	2	23.00	0.00	0.00	7.00	0.50	15.50
....................................AAGAGAGCTATCCGTCGCCAGTC............................................................................	23	2	22.50	1.50	1.50	4.50	14.50	0.50
....................................AAGAGAGCTATCCGTCGACAGTTT...........................................................................	24	1	44.00	0.00	0.00	35.00	1.00	8.00
....................................AAGAGAGCTATCCGTCAACAGTC............................................................................	23	2	22.00	0.50	0.50	9.00	0.50	11.50
....................................AGGAGAGCTATCCGTCGACAGTC............................................................................	23	2	21.00	0.50	0.00	5.50	0.00	15.00
....................................AAGAGAGCTACCCGTCGACAGTC............................................................................	23	2	21.00	1.00	0.50	7.50	0.50	11.50
....................................AAGAGAGCTATCCGTCGACGG..............................................................................	21	2	21.00	0.00	0.00	0.50	0.00	20.50
....................................AAGAGAGCTATCCGTCCACAGTC............................................................................	23	2	20.50	1.00	0.50	15.00	0.00	4.00
....................................AAGAGAGCTATCCGTCGACACTC............................................................................	23	2	20.00	0.00	0.00	13.00	3.00	4.00
......................................................................................CTGTCATGGACTTGCTCTCTTTG..........................	23	2	19.50	1.50	1.50	11.50	5.00	0.00
....................................AATAGAGCTATCCGTCGACAGTC............................................................................	23	2	19.50	0.00	0.50	6.00	0.00	13.00
....................................AAGAGAGCTATCCGTCTACAGTC............................................................................	23	2	19.00	0.50	0.50	13.00	1.00	4.00
....................................AAGAGATCTATCCGTCGACAGTC............................................................................	23	2	18.50	0.00	0.00	6.50	0.50	11.50
....................................AAGAGAGCTATCCGCCGACAGTC............................................................................	23	2	16.50	0.50	0.00	7.50	2.50	6.00
....................................AAGGGAGCTATCCGTCGACAGT.............................................................................	22	2	16.50	0.00	0.00	4.00	0.00	12.50
....................................AAGAGAGCTATCCGTCGACAGTCG...........................................................................	24	2	16.00	0.00	0.00	2.50	0.00	13.50
....................................AAGAGATCTATCCGTCGACAGT.............................................................................	22	2	15.50	0.00	0.00	4.00	0.00	11.50
....................................AAGAGACCTATCCGTCGACAGTC............................................................................	23	2	14.50	0.00	0.00	7.00	0.50	7.00
....................................AACAGAGCTATCCGTCGACAGTC............................................................................	23	2	14.00	0.50	0.00	2.50	0.00	11.00
....................................AAGAGAGCTATCCGTCGACAGTCTT..........................................................................	25	1	28.00	0.00	0.00	15.00	0.00	13.00
....................................AAGAGAGCTATCCGTCGACT...............................................................................	20	2	14.00	0.00	0.00	6.00	1.00	7.00
....................................AAGAGAGCTATCCGTCGGCAGTC............................................................................	23	2	14.00	2.00	1.00	3.00	3.50	4.50
......................................AAGAGCTATCCGTCGACAGTC............................................................................	21	2	13.50	0.00	0.00	6.00	0.00	7.50
....................................AGGAGAGCTATCCGTCGACAGT.............................................................................	22	2	13.00	0.00	0.00	2.00	0.00	11.00
...................................CAAGAGAGCTATCCGTCGACAGTC............................................................................	24	2	13.00	1.00	0.00	7.50	0.50	4.00
.......................................................................................TGTCATGGAATTGCTCTCT.............................	19	2	12.50	0.00	2.00	5.50	0.00	5.00
....................................AAGAGAGCTATCCATCGACAGTC............................................................................	23	2	12.50	0.50	0.00	6.00	0.00	6.00
....................................AAGAGAGCTATCCGTCGACG...............................................................................	20	2	12.50	0.00	0.00	1.50	0.00	11.00
......................................................................................CTGCCATGGAATTGCTCTCTTTG..........................	23	2	12.50	0.50	0.00	11.00	1.00	0.00
....................................AAGAGAGCCATCCGTCGACAGTC............................................................................	23	2	12.00	0.00	0.00	5.00	0.00	7.00
....................................AAGAGAGCTACCCGTCGACAGT.............................................................................	22	2	12.00	0.00	0.00	4.50	0.00	7.50
....................................AAGAGAGCTATCCGTTGACAGTC............................................................................	23	2	12.00	0.00	0.00	8.50	0.00	3.50
....................................AAGAGAGCTATACGTCGACAGTC............................................................................	23	2	12.00	1.50	0.00	3.00	0.50	7.00
.......................................................................................TGTCATGGAATTGCTCTCTTTGCT........................	24	2	11.50	0.00	0.00	10.00	1.50	0.00
....................................AAGATAGCTATCCGTCGACAGTC............................................................................	23	2	11.50	0.00	0.00	3.50	0.00	8.00
......................................................................................CTGTCATGGAGTTGCTCTCTTTG..........................	23	2	11.00	1.50	1.50	6.50	1.50	0.00
....................................AAGAGAGCTATCCGCCGACAGT.............................................................................	22	2	11.00	0.00	0.00	6.00	0.50	4.50
....................................AAGAGAGCCATCCGTCGACAGT.............................................................................	22	2	11.00	0.00	0.00	2.50	0.50	8.00
....................................AAGAGAGCTGTCCGTCGACAG..............................................................................	21	2	11.00	0.00	0.00	9.50	0.00	1.50
....................................AAGAGAGCTATCCGTCTACAGT.............................................................................	22	2	10.50	0.00	0.00	7.50	0.50	2.50
....................................AAGAGAGCTATCCGTCGACCG..............................................................................	21	2	10.50	1.50	0.50	0.50	0.00	8.00
....................................AAGAGAGCTATCCGTCAACAGT.............................................................................	22	2	10.50	0.00	0.00	4.50	0.50	5.50
....................................AAGAGAGCTATCCGTCGACAGCCT...........................................................................	24	1	21.00	0.00	0.00	18.00	1.00	2.00
......................................................................................CTGTCATGGAATTGCTCTCTTTA..........................	23	2	10.50	0.50	0.00	7.50	2.50	0.00
......................................................................................CTGGCATGGAATTGCTCTCTTTG..........................	23	2	10.00	0.00	0.00	7.00	3.00	0.00
....................................AAGAGAGCTATCCGTCGAAAGTC............................................................................	23	2	10.00	0.50	0.50	0.00	0.50	8.50
....................................AAGAGAGTTATCCGTCGACAGTC............................................................................	23	2	10.00	1.00	0.00	2.50	0.50	6.00
.......................................................................................TGTCATGGAATTGCTCTCTTTA..........................	22	2	10.00	0.00	0.00	9.00	1.00	0.00
........................................................................................GTCATGGAATTGCTCTCTTTG..........................	21	2	10.00	0.00	0.50	8.50	1.00	0.00
....................................AAGAGAGCTATCCGTCGACAGTAA...........................................................................	24	1	19.00	0.00	0.00	3.00	0.00	16.00
....................................AAGAGGGCTATCCGTCGACAG..............................................................................	21	2	9.50	0.00	0.50	0.50	0.00	8.50
......................................................................................CTGTCATGGCATTGCTCTCTTTG..........................	23	2	9.00	0.50	0.00	3.00	4.50	1.00
......................................................................................CTGTCATGGAATTGCTCTCCTTG..........................	23	2	9.00	0.50	0.00	7.50	0.50	0.50
....................................AAGAGCGCTATCCGTCGACAGTC............................................................................	23	2	9.00	0.00	0.00	3.00	2.50	3.50
....................................AAGAGAGCTATCCGTCGCCAGT.............................................................................	22	2	9.00	0.50	0.00	2.00	5.50	1.00

droEre2

CTT----TCAGATC--CT-CCACGAATTGTGAAATGAAGAGAGCTATCCGTCGACAGTCAAGTT-A-ATA----CCGATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAACATTCGAAAGGCGACGATTAG	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
....................................AAGAGAGCTATCCGTCGACAGTC............................................................................	23	2	4060.50	314.00	380.50	102.00	3264.00
......................................................................................CTGTCATGGAATTGCTCTCTTTG..........................	23	2	3231.00	285.00	289.50	256.50	2400.00
.......................................................................................TGTCATGGAATTGCTCTCTTTG..........................	22	2	1983.50	133.00	326.00	93.50	1431.00
....................................AAGAGAGCTATCCGTCGACAGT.............................................................................	22	2	1564.00	92.00	149.00	38.50	1284.50
.......................................................................................TGTCATGGAATTGCTCTCTTTGT.........................	23	2	1064.00	137.00	153.00	102.00	672.00
....................................AAGAGAGCTATCCGTCGACAG..............................................................................	21	2	675.00	17.00	67.50	7.00	583.50
....................................AAGAGAGCTATCCGTCGACAGTCT...........................................................................	24	2	472.50	11.00	13.50	9.50	438.50
.......................................................................................TGTCATGGAATTGCTCTCTTT...........................	21	2	286.00	7.50	41.00	4.00	233.50
....................................AAGAGAGCTATCCGTCGACA...............................................................................	20	2	211.50	0.50	28.50	0.50	182.00
......................................................................................CTGTCATGGAATTGCTCTCTTT...........................	22	2	185.50	5.50	19.00	5.50	155.50
....................................AAGAGAGCTATCCGTCGACAGTT............................................................................	23	2	154.00	0.50	7.00	2.00	144.50
.......................................................................................TGTCATGGAATTGCTCTCTTTGA.........................	23	2	141.50	6.50	3.00	5.50	126.50
......................................................................................CTGTCATGGAATTGCTCTCTTTT..........................	23	2	113.00	29.50	15.50	25.00	43.00
.......................................................................................TGTCATGGAATTGCTCTCTTTGC.........................	23	2	87.00	5.00	23.50	0.50	58.00
....................................AAGAGAGCTATCCGTCGACAGTCC...........................................................................	24	2	70.50	3.00	6.50	0.00	61.00
......................................................................................CTGTCATGGAATTGCTCTCTTTGT.........................	24	2	67.50	3.00	7.50	4.50	52.50
......................................................................................CTGTCATGGAATTGCTCTCTTTGA.........................	24	2	60.00	5.50	1.00	4.00	49.50
.......................................................................................TGTCATGGAATTGCTCTCTTTT..........................	22	2	58.50	13.00	14.50	7.00	24.00
....................................AAGAGAGCTATCCGTCGACAGTA............................................................................	23	2	53.50	1.00	1.00	0.50	51.00
....................................AAGAGAGCTATCCGTCTACAGTC............................................................................	23	2	39.00	2.00	2.00	2.00	33.00
........................................................................................GTCATGGAATTGCTCTCTTTGT.........................	22	2	34.50	7.00	2.50	1.00	24.00
....................................AAGATAGCTATCCGTCGACAGTC............................................................................	23	2	34.00	2.00	0.00	0.50	31.50
......................................................................................CTGTCATTGAATTGCTCTCTTTG..........................	23	2	32.00	2.50	0.00	2.00	27.50
....................................AAGAGAGCTATCCGTCGACAGTCA...........................................................................	24	1	62.00	5.00	7.00	0.00	50.00
....................................AATAGAGCTATCCGTCGACAGTC............................................................................	23	2	29.00	0.50	0.00	0.50	28.00
......................................................................................CTGTCATGGAATTGCTCTCTT............................	21	2	27.50	0.00	6.50	0.00	21.00
......................................................................................CTGTCATGGAATTGCTCTCTTTC..........................	23	2	25.50	0.00	0.50	0.00	25.00
......................................................................................CTGTCATGGAATTGCTCTCTTTA..........................	23	2	25.00	0.00	0.00	0.50	24.50
....................................AAGAGAGCTATCCGTAGACAGTC............................................................................	23	2	22.50	0.50	2.00	0.00	20.00
.......................................................................................TGTCATGGAATTGCTCTCTTTTT.........................	23	2	21.00	8.50	5.50	6.00	1.00
......................................................................................CTGTCATGGAATTGCTATCTTTG..........................	23	2	21.00	0.50	1.00	0.00	19.50
....................................AAGAGAGCTATCAGTCGACAGTC............................................................................	23	2	21.00	0.50	0.50	0.00	20.00
......................................................................................ATGTCATGGAATTGCTCTCTTTG..........................	23	2	20.00	0.50	0.00	0.00	19.50
....................................AAGAGATCTATCCGTCGACAGTC............................................................................	23	2	20.00	2.00	0.50	0.00	17.50
.......................................................................................TGTCATGGAATTGCTCTCTTTGTT........................	24	2	20.00	2.00	4.00	2.50	11.50
......................................................................................CTGTAATGGAATTGCTCTCTTTG..........................	23	2	19.50	0.50	0.00	0.00	19.00
.......................................................................................TGTCATGGAATTTCTCTCTTTG..........................	22	2	19.00	1.00	2.50	1.00	14.50
......................................................................................CTGTCATGTAATTGCTCTCTTTG..........................	23	2	19.00	5.00	1.00	2.50	10.50
.......................................................................................TGTCATTGAATTGCTCTCTTTG..........................	22	2	18.00	1.00	0.50	0.50	16.00
.......................................................................................TGTCATGGAATTGCTCTCTTTGTA........................	24	2	17.50	4.00	3.00	0.50	10.00
....................................AAGAGAGCTATCCGTCGACATTC............................................................................	23	2	16.50	1.00	0.50	2.00	13.00
......................................................................................CTGTCATGGAATTGCTCTATTTG..........................	23	2	16.50	0.50	0.00	0.50	15.50
....................................AAGATAGCTATCCGTCGACAGT.............................................................................	22	2	16.50	1.00	0.00	0.00	15.50
.......................................................................................TGTCATGGAATTGCTCTCTT............................	20	2	16.00	0.50	2.50	0.50	12.50
......................................................................................CTGTCATGGAATTTCTCTCTTTG..........................	23	2	16.00	2.50	1.00	2.50	10.00
....................................AAGAGAGCTATCCGTCGACAGTG............................................................................	23	2	15.50	0.00	0.50	1.00	14.00
....................................AAGAGAGCTATCCGTCGCCAGTC............................................................................	23	2	15.00	2.00	8.50	0.00	4.50
....................................AAGAGAGCTATCCGTCGACAGA.............................................................................	22	2	14.50	0.50	2.00	0.00	12.00
....................................AAGAGAGCTATCCGTCGACAGCC............................................................................	23	2	14.00	3.00	1.50	1.00	8.50
....................................AAGAGAGATATCCGTCGACAGTC............................................................................	23	2	14.00	0.00	0.50	0.00	13.50
.....................................AGAGAGCTGTCCGTCGACAGT.............................................................................	21	2	13.50	1.00	0.00	1.00	11.50
.......................................................................................TGTAATGGAATTGCTCTCTTTG..........................	22	2	13.50	0.00	0.50	0.00	13.00
.......................................................................................TGTCATGGAATTGCTATCTTTG..........................	22	2	12.50	1.00	0.00	0.00	11.50
....................................AAGAGAGCTATCCTTCGACAGTC............................................................................	23	2	12.50	0.50	0.50	0.50	11.00
....................................AAGAGAGCTATCCGTCGAC................................................................................	19	2	12.50	1.00	2.00	0.00	9.50
....................................AAGAGAGCTATCCGTCTACAGT.............................................................................	22	2	12.00	0.00	0.50	0.50	11.00
....................................AAGAGAGCTATCCGTCGAAAGTC............................................................................	23	2	11.50	0.50	1.50	0.00	9.50
.......................................................................................TGTCATGGAATTGCTCTATTTG..........................	22	2	11.00	0.00	0.00	0.00	11.00
....................................AAGAGAGCTATACGTCGACAGTC............................................................................	23	2	11.00	0.00	0.00	0.00	11.00
....................................AATAGAGCTATCCGTCGACAGT.............................................................................	22	2	11.00	0.50	0.00	0.50	10.00
......................................................................................CTTTCATGGAATTGCTCTCTTTG..........................	23	2	10.50	1.50	0.00	0.50	8.50
....................................AAGAGAGCTGTCCGTCGACAGT.............................................................................	22	2	10.50	0.50	1.00	0.50	8.50
.......................................................................................TGTCATGTAATTGCTCTCTTTG..........................	22	2	10.50	0.50	0.00	0.00	10.00
.....................................AGAGAGCTGTCCGTCGACAGTC............................................................................	22	2	10.50	0.00	1.50	1.00	8.00
.....................................AGAGAGCTATCCGTCGACAGTC............................................................................	22	2	10.00	0.50	1.00	0.00	8.50
....................................AAGAGAGCTGTCCGTCGACAGTC............................................................................	23	2	10.00	1.50	1.00	0.00	7.50
....................................AAGAGAGCTATCCGTCGACAGTTT...........................................................................	24	1	20.00	0.00	0.00	0.00	20.00
....................................AAGAGAGCTATCCGTCGACCGTC............................................................................	23	2	10.00	2.00	4.00	2.00	2.00
....................................AAGGGAGCTATCCGTCGACAGTC............................................................................	23	2	9.50	1.00	0.50	0.50	7.50
....................................AAGAGAGCTATCAGTCGACAGT.............................................................................	22	2	9.00	0.00	0.00	0.00	9.00
....................................AAGAGGGCTATCCGTCGACAGTC............................................................................	23	2	9.00	0.50	1.00	0.00	7.50
......................................................................................CTGTCATGGAATTGATCTCTTTG..........................	23	2	9.00	0.00	1.00	0.00	8.00
....................................AAGAGAGCTATCCGTCGACAGC.............................................................................	22	2	9.00	0.00	3.00	0.50	5.50
....................................AAAAGAGCTATCCGTCGACAGTC............................................................................	23	2	8.00	1.00	0.00	0.50	6.50
.......................................................................................TGTCATTGAATTGCTCTCTTTGT.........................	23	2	7.50	1.50	0.00	0.50	5.50
....................................AAGAGAGCTATCCGCCGACAGTC............................................................................	23	2	7.50	1.50	1.50	1.00	3.50
.......................................................................................TGTCATGGAATTTCTCTCTTTGT.........................	23	2	7.50	2.00	0.50	1.00	4.00
....................................AAGAGAGCTATCTGTCGACAGTC............................................................................	23	2	7.50	0.00	1.50	0.00	6.00
....................................AAGAGAGCTATCCGTCTACAG..............................................................................	21	2	7.00	0.00	0.00	0.00	7.00
.......................................................................................TGTCATGGAATTGATCTCTTTG..........................	22	2	7.00	1.00	0.50	0.50	5.00
....................................AAGATAGCTATCCGTCGACAG..............................................................................	21	2	6.50	0.00	0.00	0.00	6.50
....................................AAGAGAGCTATCCGTCGACAT..............................................................................	21	2	6.50	0.00	0.00	0.00	6.50
.......................................................................................TGTAATGGAATTGCTCTCTTTGT.........................	23	2	6.50	0.00	0.00	0.00	6.50
.......................................................................................TGTCATGGAATTGCTCTATTTGT.........................	23	2	6.50	0.00	0.50	0.50	5.50
....................................AAGAGAGCTATCCGTAGACAGT.............................................................................	22	2	6.50	0.00	1.00	0.00	5.50
......................................................................................CTGTCGTGGAATTGCTCTCTTTG..........................	23	2	6.00	0.50	1.00	0.00	4.50
....................................AAGAGAGCTATCCTTCGACAGT.............................................................................	22	2	6.00	1.00	0.00	0.00	5.00
......................................................................................CTGTCATGGACTTGCTCTCTTTG..........................	23	2	6.00	2.00	1.00	1.00	2.00
......................................................................................CTGTCATAGAATTGCTCTCTTTG..........................	23	2	6.00	1.50	1.00	1.00	2.50
....................................AAGAGAGCTATCCGTCCACAGTC............................................................................	23	2	6.00	3.00	0.00	0.50	2.50
....................................AAGAGAGCTATCCGTCGATAGTC............................................................................	23	2	6.00	1.50	1.00	1.00	2.50
....................................AAGAGAGCTATCCGTCGACAGGC............................................................................	23	2	6.00	2.50	0.50	1.00	2.00
....................................AAGAGAGATATCCGTCGACAGT.............................................................................	22	2	6.00	0.50	0.00	0.00	5.50
....................................AAGAGATCTATCCGTCGACAGT.............................................................................	22	2	6.00	0.50	0.00	0.00	5.50
......................................................................................CTGGCATGGAATTGCTCTCTTTG..........................	23	2	5.50	1.50	1.00	1.00	2.00
....................................AATAGAGCTATCCGTCGACAGTCT...........................................................................	24	1	11.00	0.00	0.00	0.00	11.00
.......................................................................................TGTCATGGAATTGCTATCTTTGT.........................	23	2	5.50	0.50	0.00	0.00	5.00
......................................................................................CTGTCATGGAATTGCTCTCT.............................	20	2	5.50	0.00	0.50	0.00	5.00
......................................................................................CTGTCCTGGAATTGCTCTCTTTG..........................	23	2	5.50	1.00	1.00	2.00	1.50
....................................AAGAGAGCTATCCATCGACAGTC............................................................................	23	2	5.50	0.00	0.50	0.50	4.50
.......................................................................................TTTCATGGAATTGCTCTCTTTG..........................	22	2	5.50	0.00	0.00	0.00	5.50

droAna3

CGC----AAGGATA--CT-CCACGAATAGTGAAATGAAGAGAGCTATCCGTCGACAGTCAAGTT-A-AAACA--CGGATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAACATTCGAAAGGCGACGAT---	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
....................................AAGAGAGCTATCCGTCGACAGT.............................................................................	22	2	10855.00	9553.00	601.00	665.50	35.50
....................................AAGAGAGCTATCCGTCGACAGTC............................................................................	23	2	9101.00	6408.00	1564.00	1052.00	77.00
.......................................................................................TGTCATGGAATTGCTCTCTTTG..........................	22	2	8801.50	7829.00	367.00	591.50	14.00
......................................................................................CTGTCATGGAATTGCTCTCTTTG..........................	23	2	8522.00	7460.00	462.50	543.50	56.00
....................................AAGAGAGCTATCCGTCGACAGTCT...........................................................................	24	2	4703.50	2998.50	1466.50	232.50	6.00
....................................AAGAGAGCTATCCGTCGACA...............................................................................	20	2	4410.50	4124.00	68.00	216.50	2.00
.......................................................................................TGTCATGGAATTGCTCTCTTTGT.........................	23	2	3940.00	3224.00	269.50	398.00	48.50
.......................................................................................TGTCATGGAATTGCTCTCTTT...........................	21	2	2608.00	2329.00	119.00	159.50	0.50
....................................AAGAGAGCTATCCGTCGACAG..............................................................................	21	2	2454.50	2004.00	227.00	217.50	6.00
....................................AAGAGAGCTATCCGTCGACAGTT............................................................................	23	2	1582.50	1025.50	465.50	90.50	1.00
......................................................................................CTGTCATGGAATTGCTCTCTTT...........................	22	2	1227.50	1089.50	51.00	86.50	0.50
......................................................................................CTGTCATGGAATTGCTCTCTT............................	21	2	833.00	778.50	19.50	35.00	0.00
.......................................................................................TGTCATGGAATTGCTCTCTTTGC.........................	23	2	565.50	512.50	14.50	37.50	1.00
.......................................................................................TGTCATGGAATTGCTCTCTTTT..........................	22	2	499.50	422.00	33.50	41.50	2.50
....................................AAGAGAGCTATCCGTCGAC................................................................................	19	2	496.00	449.00	9.00	38.00	0.00
......................................................................................CTGTCATGGAATTGCTCTCT.............................	20	2	444.00	419.50	5.00	18.50	1.00
......................................................................................CTGTCATGGAATTGCTCTCTTTT..........................	23	2	376.00	330.50	16.50	23.00	6.00
.......................................................................................TGTCATGGAATTGCTCTCTT............................	20	2	297.50	272.50	10.00	15.00	0.00
......................................................................................CTGTCATGGAATTGCTCTCTTTGT.........................	24	2	292.50	248.50	21.00	22.50	0.50
.......................................................................................TGTCATGGAATTGCTCTCTTTGTT........................	24	2	250.50	225.00	8.00	17.50	0.00
.......................................................................................TGTCATGGAATTGCTCTCTTTGA.........................	23	2	240.00	136.50	87.50	12.00	4.00
....................................AAGAGAGCTATCCGTCGACT...............................................................................	20	2	149.00	136.00	9.50	3.50	0.00
....................................AAGAGAGCTATCCGTCGACAGTTT...........................................................................	24	1	286.00	221.00	43.00	22.00	0.00
....................................AAGAGAGCTATCCGTCGACAGTCA...........................................................................	24	1	269.00	229.00	8.00	31.00	1.00
....................................AAGAGAGCTATCCGTCGACAGA.............................................................................	22	2	99.50	85.50	6.50	7.50	0.00
....................................AAGAGAGCTATCCGTCGACAGTCC...........................................................................	24	2	96.00	79.00	7.00	10.00	0.00
........................................................................................GTCATGGAATTGCTCTCTTTGT.........................	22	2	93.00	76.50	13.00	2.50	1.00
....................................AAGAGAGCTGTCCGTCGACAGT.............................................................................	22	2	93.00	70.50	18.50	3.00	1.00
....................................AAGAGATCTATCCGTCGACAGT.............................................................................	22	2	84.00	76.50	7.00	0.50	0.00
......................................................................................CTGTCATGGAATTGCTCTCTATG..........................	23	2	83.00	81.00	2.00	0.00	0.00
.......................................................................................TGTCATGGAATTGCTCTCTTAG..........................	22	2	82.00	80.00	2.00	0.00	0.00
....................................AAGAGAGATATCCGTCGACAGT.............................................................................	22	2	80.00	68.50	8.50	2.50	0.50
.......................................................................................TGTCATGGAATTTCTCTCTTTG..........................	22	2	75.50	69.00	3.50	2.00	1.00
....................................AAGAGAGCTATCAGTCGACAGT.............................................................................	22	2	67.00	64.50	1.00	1.50	0.00
.......................................................................................TGTCATGGAATTGCTCTCTTTGTA........................	24	2	65.50	56.00	4.50	5.00	0.00
....................................AAGAGAGCTATCCGTCGACAAT.............................................................................	22	2	65.00	59.00	5.00	1.00	0.00
....................................AATAGAGCTATCCGTCGACAGTC............................................................................	23	2	61.00	32.50	28.00	0.00	0.50
......................................................................................CTGTCATGGAATTGCTCTCTCTG..........................	23	2	61.00	57.00	2.00	2.00	0.00
....................................AAGAGAGCTATCCGTCGACATT.............................................................................	22	2	59.50	55.00	1.50	2.50	0.50
....................................AAGAGAGCTATACGTCGACAGT.............................................................................	22	2	59.50	56.50	1.50	1.50	0.00
....................................AAGAGATCTATCCGTCGACAGTC............................................................................	23	2	58.50	42.00	15.50	0.50	0.50
....................................AAGAGAGCTATCCGTCGACACT.............................................................................	22	2	57.50	52.50	2.00	2.50	0.50
....................................AAGATAGCTATCCGTCGACAGT.............................................................................	22	2	55.50	51.00	4.00	0.50	0.00
....................................AAGAGAGCTATCCGTCGACACTC............................................................................	23	2	54.50	42.00	6.00	6.50	0.00
......................................................................................CTGTCATGGAATTTCTCTCTTTG..........................	23	2	53.00	46.00	4.00	2.00	1.00
....................................AAGATAGCTATCCGTCGACAGTC............................................................................	23	2	53.00	37.00	16.00	0.00	0.00
......................................................................................CTGTCATGGAATTGCTCTCTTTGA.........................	24	2	52.50	27.50	22.50	2.50	0.00
.......................................................................................TGTCATGGAATTGCTCTCTTCG..........................	22	2	52.00	51.00	0.50	0.50	0.00
.......................................................................................TGTCATGGAATTGCTCTCTTTTT.........................	23	2	52.00	33.50	3.00	8.50	7.00
....................................AAGAGAGCTATCCGTCGACAATC............................................................................	23	2	48.50	41.00	7.00	0.50	0.00
....................................AAGAGAGCTATCAGTCGACAGTC............................................................................	23	2	48.50	38.50	6.00	4.00	0.00
....................................AAGAGAGATATCCGTCGACAGTC............................................................................	23	2	47.50	30.50	15.00	2.00	0.00
......................................................................................CTGTCATGGAATTGCTCTCTGTG..........................	23	2	47.00	45.00	1.00	1.00	0.00
....................................AATAGAGCTATCCGTCGACAGT.............................................................................	22	2	46.50	31.00	15.00	0.50	0.00
....................................AAGAGAGCTATCCGTCGACAGTA............................................................................	23	2	46.00	29.00	12.00	5.00	0.00
....................................AAGAGAGCTATACGTCGACAGTC............................................................................	23	2	45.50	38.00	3.50	4.00	0.00
....................................AAGAGAGCTATCCGTCGACAT..............................................................................	21	2	44.50	38.50	5.50	0.50	0.00
....................................AATAGAGCTATCCGTCGACAGTCT...........................................................................	24	1	89.00	25.00	64.00	0.00	0.00
....................................AAGAGATCTATCCGTCGACA...............................................................................	20	2	43.50	42.00	0.50	1.00	0.00
....................................AAGAGAGCTGTCCGTCGACAGTC............................................................................	23	2	43.00	33.00	7.50	2.00	0.50
.......................................................................................TGTCATGGAATAGCTCTCTTTG..........................	22	2	42.00	42.00	0.00	0.00	0.00
....................................AAGAGAGCTATCCGTCGACAGC.............................................................................	22	2	40.00	28.50	0.00	11.50	0.00
.......................................................................................TGTCATGGAATTACTCTCTTTG..........................	22	2	39.50	38.50	0.00	1.00	0.00
.......................................................................................TGTCATGGAATTGCTATCTTTG..........................	22	2	39.00	35.00	2.00	2.00	0.00
....................................AAGAGAGCTATCCGTCGACATTC............................................................................	23	2	38.00	34.00	2.50	1.00	0.50
.......................................................................................TGTCATGGAATTGATCTCTTTG..........................	22	2	37.00	32.00	1.00	4.00	0.00
....................................AAGAGAGCTATCCGTAGACAGT.............................................................................	22	2	36.50	33.00	0.50	3.00	0.00
......................................................................................CTGTCATGGAAATGCTCTCTTTG..........................	23	2	36.50	36.50	0.00	0.00	0.00
.......................................................................................TGTCATGGAATTTCTCTCTTTGT.........................	23	2	35.50	27.50	3.50	3.00	1.50
....................................AAGAGAGCTATGCGTCGACAGT.............................................................................	22	2	35.00	35.00	0.00	0.00	0.00
....................................AAGAGATCTATCCGTCGACAGTCT...........................................................................	24	1	70.00	31.00	38.00	1.00	0.00
.......................................................................................TGTCATGGAATTGCTCTCTTAGT.........................	23	2	35.00	34.00	1.00	0.00	0.00
....................................AAGAGAGATATCCGTCGACA...............................................................................	20	2	34.00	31.50	1.50	1.00	0.00
......................................................................................CTGTCATGGAACTGCTCTCTTTG..........................	23	2	34.00	33.00	0.00	1.00	0.00
....................................AAGAGAGATATCCGTCGACAGTCT...........................................................................	24	1	67.00	39.00	28.00	0.00	0.00
....................................AAGAGAGCTATCCGTCGACAGCC............................................................................	23	2	33.50	12.50	4.50	15.50	1.00
....................................AAGAGAGCTATCCGTCGACAGTCTT..........................................................................	25	1	67.00	52.00	8.00	7.00	0.00
......................................................................................CTGTCATGGAATTGCTCTCTTTGC.........................	24	2	33.50	31.00	0.50	2.00	0.00
.......................................................................................TGTAATGGAATTGCTCTCTTTG..........................	22	2	33.00	30.50	2.00	0.50	0.00
......................................................................................CTGTCATGGAATCGCTCTCTTTG..........................	23	2	32.00	29.50	2.50	0.00	0.00
.......................................................................................TGTCATGGAATTGCTCTCT.............................	19	2	32.00	24.50	1.00	6.00	0.50
......................................................................................CTGTCATGGAATAGCTCTCTTTG..........................	23	2	31.00	31.00	0.00	0.00	0.00
........................................................................................GTCATGGAATTGCTCTCTTTG..........................	21	2	31.00	28.00	1.50	1.50	0.00
......................................................................................CTGTCATGGAATTGCTCTCTTTTT.........................	24	2	31.00	28.00	1.00	2.00	0.00
....................................AAGAGAGCTATCCGTCTACAGTC............................................................................	23	2	30.00	17.00	8.50	4.00	0.50
......................................................................................CTGTCATGGAAGTGCTCTCTTTG..........................	23	2	29.00	27.50	0.00	1.00	0.50
....................................AAGAGAGCTATCAGTCGACAGTCT...........................................................................	24	1	58.00	44.00	12.00	2.00	0.00
....................................AAGAGAGCTATCCGTCTACAGT.............................................................................	22	2	28.50	24.00	4.00	0.50	0.00
......................................................................................ATGTCATGGAATTGCTCTCTTTG..........................	23	2	27.50	19.00	3.50	5.00	0.00
....................................AAGAGAGCTGTCCGTCGACAG..............................................................................	21	2	27.00	14.50	10.00	2.50	0.00
....................................AAGAGAGCTACCCGTCGACAGT.............................................................................	22	2	27.00	21.00	3.00	3.00	0.00
....................................AAGATAGCTATCCGTCGACAGTCT...........................................................................	24	1	54.00	31.00	22.00	1.00	0.00
....................................AAGATAGCTATCCGTCGACA...............................................................................	20	2	27.00	26.50	0.50	0.00	0.00
.......................................................................................TGTCATGGAATTGCTCTCTTGG..........................	22	2	26.00	25.00	0.50	0.50	0.00
....................................AAGAGAGCTATCCGTCGACAATCT...........................................................................	24	1	52.00	37.00	14.00	1.00	0.00
....................................AAGAGAGCTATCAGTCGACA...............................................................................	20	2	25.50	24.50	0.50	0.50	0.00
....................................AAGAGAGCTATCCGTCGACAA..............................................................................	21	2	25.50	24.50	0.50	0.50	0.00
....................................AAGAGAGCTATACGTCGACA...............................................................................	20	2	25.50	24.00	0.00	1.50	0.00
.......................................................................................TGTCATGGAATTGCTCTCTTA...........................	21	2	24.50	23.50	1.00	0.00	0.00
......................................................................................CTGTCATGGAATTGCTATCTTTG..........................	23	2	24.00	20.00	2.50	1.50	0.00
....................................AAGAGAGCTATCCGTCGACACTCT...........................................................................	24	1	48.00	34.00	13.00	1.00	0.00

dp4

CTG----TATAATA--CT-GAACGAATAGTGAAATAAAGAGAGCTATCCGTCGACAGTCAAGTT-A-AT-----CAGATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAATATTCGAAAAGCGCCG-----	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
....................................AAGAGAGCTATCCGTCGACAGT.............................................................................	22	2	11949.50	5164.50	152.50	499.00	6133.50
....................................AAGAGAGCTATCCGTCGACAGTC............................................................................	23	2	11339.50	7387.50	419.00	713.00	2820.00
.......................................................................................TGTCATGGAATTGCTCTCTTTG..........................	22	2	8151.50	7191.50	165.00	773.50	21.50
......................................................................................CTGTCATGGAATTGCTCTCTTTG..........................	23	2	7794.00	6679.00	402.00	682.00	31.00
.......................................................................................TGTCATGGAATTGCTCTCTTTGT.........................	23	2	5328.00	4372.50	288.50	661.50	5.50
....................................AAGAGAGCTATCCGTCGACAG..............................................................................	21	2	3538.00	1770.00	12.50	151.00	1604.50
...................................AAAGAGAGCTGTCCGTCGACAGT.............................................................................	23	2	3195.00	2605.00	388.00	190.00	12.00
.......................................................................................TGTCATGGAATTGCTCTCTTT...........................	21	2	2016.50	1892.00	2.50	116.00	6.00
...................................AAAGAGAGCTGTCCGTCGACAG..............................................................................	22	2	1998.50	1557.50	170.50	126.00	144.50
....................................AAGAGAGCTATCCGTCGACAGTCC...........................................................................	24	2	1541.50	1371.00	15.50	67.50	87.50
....................................AAGAGAGCTATCCGTCGACAGTT............................................................................	23	2	1215.00	908.50	5.50	26.00	275.00
....................................AAGAGAGCTATCCGTCGACA...............................................................................	20	2	1155.00	881.50	1.00	75.50	197.00
......................................................................................CTGTCATGGAATTGCTCTCTTT...........................	22	2	1137.50	1044.50	5.00	66.00	22.00
....................................AAGAGAGCTATCCGTCGACAGTCT...........................................................................	24	2	925.00	857.00	7.50	21.00	39.50
...................................AAAGAGAGCTGTCCGTCGACA...............................................................................	21	2	922.00	671.00	2.50	55.00	193.50
...................................AAAGAGAGCTGTCCGTCGAC................................................................................	20	2	493.00	210.00	0.50	12.00	270.50
.......................................................................................TGTCATGGAATTGCTCTCTTTGC.........................	23	2	449.00	385.50	7.00	53.50	3.00
......................................................................................CTGTCATGGAATTGCTCTCTT............................	21	2	441.00	395.50	1.50	36.00	8.00
.......................................................................................TGTCATGGAATTGCTCTCTTTT..........................	22	2	271.50	241.00	1.50	28.50	0.50
.......................................................................................TGTCATGGAATTGCTCTCTTTGA.........................	23	2	231.00	190.00	15.00	25.50	0.50
......................................................................................CTGTCATGGAATTGCTCTCTTTGT.........................	24	2	218.50	194.50	4.00	20.00	0.00
........................................................................................GTCATGGAATTGCTCTCTTTGT.........................	22	2	209.00	187.00	7.50	14.50	0.00
....................................AAGAGAGCTATCCGTCGACAGC.............................................................................	22	2	204.00	21.50	0.50	5.50	176.50
.......................................................................................TGTCATGGAATTGCTCTCTT............................	20	2	179.00	165.50	0.50	11.50	1.50
......................................................................................CTGTCATGGAATTGCTCTCTTTT..........................	23	2	179.00	157.00	6.00	14.50	1.50
....................................AAGAGAGCTATCCGTCGACAGG.............................................................................	22	2	142.00	3.00	0.50	1.00	137.50
....................................AAGAGAGCTATCCGTCGACAGTCA...........................................................................	24	2	119.50	94.00	1.00	9.50	15.00
....................................AAGAGAGCTATCCGTCGAC................................................................................	19	2	110.00	48.50	0.50	5.00	56.00
......................................................................................CTGTCATGGAATTGCTCTCT.............................	20	2	99.50	91.00	0.00	6.00	2.50
.......................................................................................TGTCATGGAATTGCTCTCTTTGTT........................	24	2	90.50	80.00	3.00	7.50	0.00
....................................AAGAGAGCTATCCGTCGACAGTA............................................................................	23	2	61.50	35.50	1.00	2.50	22.50
...................................AAAGAGAGCTGTCCGTCGA.................................................................................	19	2	60.00	52.50	0.50	2.00	5.00
...................................AAAGAGAGCTATCCGTCGACAGT.............................................................................	23	2	56.00	27.00	3.00	1.50	24.50
...................................AAAGAGAGCTGTCCGTCGACT...............................................................................	21	2	54.00	40.50	0.00	3.50	10.00
....................................AAGAGAGCTATCCGTCGACAGCC............................................................................	23	2	52.50	34.00	3.00	12.50	3.00
....................................AAGAGAGCTATCCGTCGACT...............................................................................	20	2	47.50	33.50	0.00	0.00	14.00
...................................AAAGAGAGCTGTCCGTCGACAGTT............................................................................	24	2	47.50	24.50	15.00	6.50	1.50
.......................................................................................TGTCATGGAATTGCTCTCTTTGTA........................	24	2	44.50	38.00	4.00	2.50	0.00
....................................AAGAGAGCTATCCGTCGACAGTCCA..........................................................................	25	2	36.00	32.00	0.50	2.00	1.50
......................................................................................CTGTCATGGAATTGCTCTCTTTGA.........................	24	2	35.00	26.00	4.00	3.00	2.00
.....................................AGAGAGCTATCCGTCGACAGTC............................................................................	22	2	32.00	22.00	2.50	1.00	6.50
....................................AAGAGAGCTATCCGTCGACAGTTT...........................................................................	24	1	58.00	45.00	0.00	2.00	11.00
...................................AAAGAGAGCTATCCGTCGACAG..............................................................................	22	2	24.00	16.00	0.50	1.00	6.50
....................................AAGAGAGCTATCCGTCGACAGTCCT..........................................................................	25	1	47.00	47.00	0.00	0.00	0.00
....................................AAGAGAGCTGTCCGTCGACAGT.............................................................................	22	2	21.50	17.50	2.00	1.50	0.50
...................................AAAGAGAGCTGTCCGTCGACAGTA............................................................................	24	2	21.00	16.00	4.00	1.00	0.00
....................................AAGAGAGCTATCCGTCGACAGA.............................................................................	22	2	21.00	17.00	0.00	2.00	2.00
........................................................................................GTCATGGAATTGCTCTCTTTG..........................	21	2	21.00	20.50	0.50	0.00	0.00
.......................................................................................TGTCATGGAATTGCTCTCTTTC..........................	22	2	20.00	18.50	0.50	1.00	0.00
....................................AAGAGAGCTATCGGTCGACAGT.............................................................................	22	2	19.00	0.50	0.00	0.00	18.50
...................................AAAGAGAGCTATCCGTCGACA...............................................................................	21	2	19.00	17.00	0.00	1.00	1.00
........................................GAGCTATCCGTCGACAGT.............................................................................	18	2	18.50	0.00	0.00	0.00	18.50
....................................AAGAGGGCTATCCGTCGACAGTC............................................................................	23	2	18.00	9.50	1.50	1.00	6.00
.....................................AGAGAGCTATCCGTCGACAGT.............................................................................	21	2	17.50	8.50	1.00	0.00	8.00
.......................................................................................TGTCATGGAATTGCTCTCTTTTT.........................	23	2	17.00	11.50	2.00	3.50	0.00
....................................AAGAGAGCTATCCGCCGACAGTC............................................................................	23	2	16.50	10.50	0.50	3.50	2.00
.......................................................................................TGCCATGGAATTGCTCTCTTTG..........................	22	2	16.50	11.00	0.50	5.00	0.00
....................................AGGAGAGCTATCCGTCGACAGTC............................................................................	23	2	16.00	7.50	1.50	2.00	5.00
...................................AAAGAGAGCTGTCCGTCGACAGC.............................................................................	23	2	15.00	7.50	3.00	4.00	0.50
...................................AAAGAGAGCTGTCCGTCGACCGT.............................................................................	23	2	15.00	2.00	11.00	2.00	0.00
.......................................................................................TGGCATGGAATTGCTCTCTTTGT.........................	23	2	14.50	1.50	4.50	8.50	0.00
....................................AAGAGGGCTATCCGTCGACAGT.............................................................................	22	2	14.50	6.50	0.00	0.50	7.50
....................................AAGAGAGCTATCCGTCGACAGTAA...........................................................................	24	2	14.00	4.00	0.00	0.50	9.50
....................................AAGAGAGCTATCAGTCGACAGT.............................................................................	22	2	13.50	0.50	0.50	0.50	12.00
....................................AAGAGAGCTATCCGTCTACAGTC............................................................................	23	2	13.50	11.00	0.50	1.00	1.00
........................................GAGCTATCCGTCGACAGTC............................................................................	19	2	13.50	0.00	0.00	0.50	13.00
....................................AAGAGAGCTACCCGTCGACAGTC............................................................................	23	2	13.00	7.50	1.00	1.00	3.50
....................................AAGGGAGCTATCCGTCGACAGT.............................................................................	22	2	13.00	5.00	0.50	0.00	7.50
....................................AAGAGAGCTATCCGTCCACAGTC............................................................................	23	2	13.00	6.50	1.00	4.50	1.00
...................................AAAGAGAGCTGTCCGTCGACAGA.............................................................................	23	2	13.00	9.50	1.00	2.50	0.00
......................................................................................CTGCCATGGAATTGCTCTCTTTG..........................	23	2	12.50	9.50	1.50	1.50	0.00
....................................AAGAGAGCTATCCGTCGACCGT.............................................................................	22	2	12.00	8.00	1.50	2.00	0.50
....................................AGGAGAGCTATCCGTCGACAGT.............................................................................	22	2	11.00	6.00	0.50	0.50	4.00
.......................................................................................TGTCATGGAATTGCTCCCTTTG..........................	22	2	11.00	8.50	1.00	1.50	0.00
.......................................................................................TGTCATGGAATTGCTCTCCTTG..........................	22	2	11.00	11.00	0.00	0.00	0.00
...................................CAAGAGAGCTATCCGTCGACAGTC............................................................................	24	2	11.00	9.00	0.50	1.00	0.50
......................................................................................CTGTCATGGAATTGCTCTCCTTG..........................	23	2	11.00	10.00	1.00	0.00	0.00
.......................................................................................TGTCGTGGAATTGCTCTCTTTG..........................	22	2	10.50	7.50	0.50	2.50	0.00
.......................................................................................CGTCATGGAATTGCTCTCTTTG..........................	22	2	10.00	8.00	0.50	1.50	0.00
....................................AAGAGAGCTATCTGTCGACAGTC............................................................................	23	2	9.50	4.50	1.00	3.00	1.00
....................................GAGAGAGCTATCCGTCGACAGTC............................................................................	23	2	9.50	6.00	0.00	1.50	2.00
....................................AAGGGAGCTATCCGTCGACAGTC............................................................................	23	2	9.50	6.50	0.00	0.50	2.50
....................................AAGAGAGCTACCCGTCGACAGT.............................................................................	22	2	9.50	4.50	0.00	0.50	4.50
.......................................................................................TGGCATGGAATTGCTCTCTTTG..........................	22	2	9.50	2.50	0.00	7.00	0.00
......................................AAGAGCTATCCGTCGACAGTC............................................................................	21	2	9.50	8.00	0.00	0.50	1.00
....................................AAGAGAGCTATCCGTCGCCAGTC............................................................................	23	2	9.50	5.50	1.50	2.00	0.50
....................................GAGAGAGCTATCCGTCGACAGT.............................................................................	22	2	9.00	5.00	0.50	0.50	3.00
....................................AAGAGAGCTATCCGTTGACAGTC............................................................................	23	2	9.00	3.50	2.00	0.50	3.00
...................................AAAGAGAGCTGTCCGTCGACAA..............................................................................	22	2	9.00	9.00	0.00	0.00	0.00
.......................................................................................TGTCATGGAATTGCCCTCTTTG..........................	22	2	9.00	9.00	0.00	0.00	0.00
.......................................................................................TGCCATGGAATTGCTCTCTTTGT.........................	23	2	9.00	7.00	0.50	1.50	0.00
.......................................................................................TGTCATGGAATTGCTCTCTTTA..........................	22	2	9.00	8.00	0.00	1.00	0.00
....................................AAGAGAGCTATCCGTCGACCGTC............................................................................	23	2	9.00	4.50	3.50	1.00	0.00
......................................................................................CTGTCATGGAATTGCTCCCTTTG..........................	23	2	8.50	8.50	0.00	0.00	0.00
.......................................................................................TTTCATGGAATTGCTCTCTTTG..........................	22	2	8.50	7.50	0.00	1.00	0.00
....................................AAGAGAGCTATCCGCCGACAGT.............................................................................	22	2	8.50	5.00	0.00	1.50	2.00
.......................................................................................TGTCATGGAATTTCTCTCTTTGT.........................	23	2	8.50	6.00	1.00	1.50	0.00
......................................................................................ATGTCATGGAATTGCTCTCTTTG..........................	23	2	8.50	6.00	0.50	2.00	0.00
....................................AAGAGAGCTATCCGTCGACAC..............................................................................	21	2	8.50	3.00	0.00	2.00	3.50
...................................AAAGAGAGCTGTCCGTCGACAGTC............................................................................	24	2	8.00	6.00	1.00	1.00	0.00
....................................AAGAGAGCTATCTGTCGACAGT.............................................................................	22	2	8.00	3.50	0.00	1.00	3.50

droPer1

CTG----TATAATA--CT-GAACGAATAGTGAAATAAAGAGAGCTATCCGTCGACAGTCAAGTT-A-AT-----CAGATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAATATTCGAAAAGCGCCG-----	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
....................................AAGAGAGCTATCCGTCGACAGT.............................................................................	22	2	9796.50	4428.00	51.50	73.00	33.50	5210.50
....................................AAGAGAGCTATCCGTCGACAGTC............................................................................	23	2	9346.00	3377.00	75.50	145.50	88.50	5659.50
.......................................................................................TGTCATGGAATTGCTCTCTTTGT.........................	23	2	3565.00	3243.00	75.50	157.00	51.00	38.50
......................................................................................CTGTCATGGAATTGCTCTCTTTG..........................	23	2	3559.00	3016.50	92.50	169.00	55.00	226.00
.......................................................................................TGTCATGGAATTGCTCTCTTTG..........................	22	2	3478.00	3183.00	49.50	159.00	42.00	44.50
...................................AAAGAGAGCTGTCCGTCGACAGT.............................................................................	23	2	2973.00	2824.00	66.00	36.00	28.00	19.00
...................................AAAGAGAGCTGTCCGTCGACAG..............................................................................	22	2	2867.50	2710.50	38.00	22.50	8.50	88.00
....................................AAGAGAGCTATCCGTCGACAG..............................................................................	21	2	2625.50	1744.50	4.50	27.50	13.00	836.00
....................................AAGAGAGCTATCCGTCGACAGTT............................................................................	23	2	882.00	766.50	4.50	5.00	5.50	100.50
.......................................................................................TGTCATGGAATTGCTCTCTTT...........................	21	2	696.00	660.00	1.50	26.00	8.00	0.50
....................................AAGAGAGCTATCCGTCGACAGTCT...........................................................................	24	2	684.00	640.50	3.00	6.50	2.00	32.00
........................................................................................GTCATGGAATTGCTCTCTTTGT.........................	22	2	678.00	666.50	2.00	7.00	2.50	0.00
....................................AAGAGAGCTATCCGTCGACA...............................................................................	20	2	599.00	548.00	1.00	11.50	2.00	36.50
...................................AAAGAGAGCTGTCCGTCGACA...............................................................................	21	2	588.50	540.50	2.50	11.00	6.50	28.00
....................................AAGAGAGCTATCCGTCGACAGG.............................................................................	22	2	533.50	2.00	1.00	1.00	0.00	529.50
....................................AAGAGAGCTATCCGTCGACAGTCC...........................................................................	24	2	387.00	254.00	2.50	11.00	6.00	113.50
......................................................................................CTGTCATGGAATTGCTCTCTTT...........................	22	2	327.50	289.00	3.00	16.00	7.00	12.50
....................................AAGAGAGCTATCCGTCGACAGC.............................................................................	22	2	286.50	9.50	0.00	1.00	0.50	275.50
.......................................................................................TGTCATGGAATTGCTCTCTTTGC.........................	23	2	218.50	199.50	2.50	6.50	3.50	6.50
...................................AAAGAGAGCTGTCCGTCGAC................................................................................	20	2	203.00	142.50	0.50	2.00	1.00	57.00
.......................................................................................TGTCATGGAATTGCTCTCTTTGA.........................	23	2	154.50	141.50	4.50	6.50	2.00	0.00
......................................................................................CTGTCATGGAATTGCTCTCTT............................	21	2	144.50	129.50	1.50	6.00	0.00	7.50
......................................................................................CTGTCATGGAATTGCTCTCTTTGT.........................	24	2	125.00	116.00	0.50	4.50	1.00	3.00
....................................AAGAGAGCTATCCGTCGAC................................................................................	19	2	114.00	57.00	1.00	0.00	0.00	56.00
...................................AAAGAGAGCTATCCGTCGACAGT.............................................................................	23	2	96.50	32.50	0.50	0.50	0.50	62.50
.......................................................................................TGTCATGGAATTGCTCTCTTTT..........................	22	2	73.00	67.00	0.50	4.00	1.50	0.00
...................................AAAGAGAGCTGTCCGTCGA.................................................................................	19	2	68.50	67.00	0.00	0.00	0.50	1.00
......................................................................................CTGTCATGGAATTGCTCTCT.............................	20	2	62.50	46.00	0.50	0.00	0.00	16.00
.......................................................................................TGTCATGGAATTGCTCTCTT............................	20	2	59.00	54.50	0.00	2.00	1.00	1.50
......................................................................................CTGTCATGGAATTGCTCTCTTTT..........................	23	2	50.50	47.00	1.50	1.00	1.00	0.00
....................................AAGAGAGCTATCCGTCGACAGTCA...........................................................................	24	2	49.50	31.00	1.00	0.50	0.50	16.50
.......................................................................................TGTCATGGAATTGCTCTCTTTGTT........................	24	2	49.50	40.00	2.50	2.00	0.00	5.00
...................................AAAGAGAGCTGTCCGTCGACT...............................................................................	21	2	48.00	47.00	0.00	0.00	0.00	1.00
........................................................................................GTCATGGAATTGCTCTCTTTG..........................	21	2	44.50	44.50	0.00	0.00	0.00	0.00
...................................AAAGAGAGCTGTCCGTCGACAGTT............................................................................	24	2	41.00	38.00	2.50	0.50	0.00	0.00
....................................AAGAGAGCTATCCGTCGACAGA.............................................................................	22	2	38.00	35.00	0.50	0.50	0.50	1.50
........................................GAGCTATCCGTCGACAGTC............................................................................	19	2	33.50	1.50	0.00	0.00	0.00	32.00
.....................................AGAGAGCTATCCGTCGACAGTC............................................................................	22	2	29.50	9.50	0.00	1.50	1.00	17.50
.......................................................................................TGTCATGGAATTGCTCTCTTTGTA........................	24	2	29.50	23.50	1.00	0.50	0.50	4.00
....................................AAGAGAGCTATCGGTCGACAGTC............................................................................	23	2	24.50	0.00	0.00	0.00	0.00	24.50
...................................AAAGAGAGCTATCCGTCGACAG..............................................................................	22	2	23.50	12.50	0.00	0.00	0.00	11.00
...................................AAAGAGAGCTGTCCGTCGACAGTA............................................................................	24	2	22.50	20.50	0.50	0.00	1.00	0.50
......................................................................................CTGTCATGGAATTGCTCTCTTTGA.........................	24	2	19.50	15.00	0.50	0.50	1.00	2.50
....................................AAGAGAGCTATCCGTCGACAGAC............................................................................	23	2	18.00	0.00	0.00	0.00	0.00	18.00
....................................AAGAGAGCTATCCGTCGACAGTA............................................................................	23	2	17.50	13.50	0.00	0.50	0.00	3.50
....................................AAGAGAGCTATCCGTCGACAGCC............................................................................	23	2	17.00	4.00	0.00	1.50	1.50	10.00
....................................AAGAGAGCTATCCGTCGACAGTTT...........................................................................	24	1	34.00	32.00	1.00	0.00	0.00	1.00
....................................AAGAGAGCTATCCGTCGACT...............................................................................	20	2	15.50	15.50	0.00	0.00	0.00	0.00
........................................GAGCTATCCGTCGACAGT.............................................................................	18	2	15.50	0.00	0.00	0.00	0.00	15.50
....................................AATAGAGCTATCCGTCGACAGT.............................................................................	22	2	14.00	4.50	0.00	0.00	0.00	9.50
.......................................................................................TGTCATGGAATTGCTCTCT.............................	19	2	13.50	8.00	0.00	0.00	0.00	5.50
....................................AAGGGAGCTATCCGTCGACAGT.............................................................................	22	2	13.00	4.00	0.50	0.00	0.00	8.50
....................................AAGAGAGCTATCAGTCGACAGTC............................................................................	23	2	13.00	0.50	0.00	0.00	0.50	12.00
....................................AAGAGAGCTATCAGTCGACAGT.............................................................................	22	2	12.50	2.00	0.00	0.00	0.00	10.50
....................................AAGAGAGCTATCCGTCTACAGT.............................................................................	22	2	12.50	11.00	0.00	0.00	0.50	1.00
....................................AGGAGAGCTATCCGTCGACAGT.............................................................................	22	2	12.00	3.00	0.00	0.00	1.00	8.00
....................................AAGAGAGCTGTCCGTCGACAGT.............................................................................	22	2	12.00	9.50	0.00	1.00	0.00	1.50
....................................AAGGGAGCTATCCGTCGACAGTC............................................................................	23	2	11.50	1.50	0.50	0.50	0.00	9.00
....................................AAGAGAGCTATCGGTCGACAGT.............................................................................	22	2	11.50	0.00	0.00	0.00	0.00	11.50
....................................AAGAGAGCTACCCGTCGACAGTC............................................................................	23	2	11.50	5.00	0.00	0.00	0.00	6.50
....................................AAGAGGGCTATCCGTCGACAGT.............................................................................	22	2	11.50	3.50	0.00	0.00	0.00	8.00
....................................AATAGAGCTATCCGTCGACAGTC............................................................................	23	2	11.50	4.00	0.00	0.00	0.00	7.50
.....................................AGAGAGCTATCCGTCGACAGT.............................................................................	21	2	11.00	3.50	0.00	0.00	0.50	7.00
...................................AAAGAGAGCTGTCCGTCGACAGA.............................................................................	23	2	11.00	10.00	0.00	0.00	1.00	0.00
...................................AAAGAGAGCTGTCCGTCGACAGC.............................................................................	23	2	11.00	9.50	0.00	0.00	0.00	1.50
....................................AAGAGAGCTATCCGTCGACAC..............................................................................	21	2	11.00	0.50	0.00	0.00	0.00	10.50
........................................................................................GTCATGGAATTGCTCTCTTTGC.........................	22	2	11.00	11.00	0.00	0.00	0.00	0.00
....................................AAGAGGGCTATCCGTCGACAGTC............................................................................	23	2	10.50	1.00	0.00	0.50	1.00	8.00
....................................AAGAGAGCTATCCGTTGACAGT.............................................................................	22	2	10.50	9.00	0.00	0.50	0.00	1.00
....................................AAGAGAGCTACCCGTCGACAGT.............................................................................	22	2	10.50	4.50	0.00	0.00	0.50	5.50
....................................AAGAGAGCTATCCGTCGACAGTCCT..........................................................................	25	1	20.00	18.00	0.00	0.00	0.00	2.00
....................................AAGAGAGCTATCCGTCGACAGTAA...........................................................................	24	2	10.00	2.50	0.00	0.00	0.00	7.50
....................................AGGAGAGCTATCCGTCGACAGTC............................................................................	23	2	9.50	2.00	0.00	0.00	0.00	7.50
....................................AAGAGAGCTATCCGTCTACAGTC............................................................................	23	2	9.50	4.50	0.50	0.00	0.50	4.00
....................................AAGAGAGCTATCCGCCGACAGT.............................................................................	22	2	9.00	4.00	0.00	0.50	0.00	4.50
...................................AAAGAGAGCTGTCCGTCGACAGTC............................................................................	24	2	9.00	8.50	0.50	0.00	0.00	0.00
....................................AAGAGAGCTATCTGTCGACAGT.............................................................................	22	2	9.00	2.50	0.00	0.50	0.00	6.00
....................................AAGATAGCTATCCGTCGACAGT.............................................................................	22	2	9.00	5.50	0.00	0.00	0.00	3.50
...................................AAAGAGAGCTATCCGTCGACA...............................................................................	21	2	8.50	8.00	0.00	0.00	0.00	0.50
....................................AAGAGACCTATCCGTCGACAGT.............................................................................	22	2	8.00	1.50	0.00	0.00	0.50	6.00
....................................GAGAGAGCTATCCGTCGACAGT.............................................................................	22	2	8.00	4.00	0.00	0.00	0.00	4.00
....................................AAGAGAGCTATCCGCCGACAGTC............................................................................	23	2	7.50	2.50	0.00	0.50	2.00	2.50
....................................AAGAGAGCTATCCATCGACAGTC............................................................................	23	2	7.50	1.00	0.00	0.50	1.00	5.00
....................................AAGAGAGCCATCCGTCGACAGT.............................................................................	22	2	7.50	3.00	0.00	0.00	0.00	4.50
......................................................................................ATGTCATGGAATTGCTCTCTTTG..........................	23	2	7.50	6.50	1.00	0.00	0.00	0.00
....................................AAGAGAGCTATCCGTCAACAGTC............................................................................	23	2	7.50	2.00	0.00	0.50	0.00	5.00
....................................AAGAGATCTATCCGTCGACAGT.............................................................................	22	2	7.50	2.00	0.00	0.00	0.50	5.00
....................................AAGATAGCTATCCGTCGACAGTC............................................................................	23	2	7.50	3.00	0.00	0.00	0.00	4.50
.......................................AGAGCTATCCGTCGACAGT.............................................................................	19	2	7.00	0.50	0.00	0.00	0.00	6.50
....................................AAGAGAGCCATCCGTCGACAGTC............................................................................	23	2	7.00	1.00	0.50	0.00	0.00	5.50
.........................................AGCTATCCGTCGACAGTC............................................................................	18	2	7.00	0.00	0.00	0.00	0.00	7.00
....................................CAGAGAGCTATCCGTCGACAGT.............................................................................	22	2	7.00	7.00	0.00	0.00	0.00	0.00
...................................CAAGAGAGCTATCCGTCGACAGTC............................................................................	24	2	7.00	4.00	0.00	0.00	0.00	3.00
...................................AAAGAGAGCTGTCCGTCGACAA..............................................................................	22	2	7.00	7.00	0.00	0.00	0.00	0.00
.......................................................................................TGTCATGGAATTGCCCTCTTTG..........................	22	2	7.00	7.00	0.00	0.00	0.00	0.00
....................................AAAAGAGCTATCCGTCGACAGTC............................................................................	23	2	6.50	4.00	0.00	1.00	0.00	1.50
....................................AAGAGAGCTATCCGTCGGCAGTC............................................................................	23	2	6.50	2.00	0.50	0.00	1.00	3.00
....................................AAGAGATCTATCCGTCGACAGTC............................................................................	23	2	6.50	1.00	0.00	0.00	0.00	5.50
....................................AAGAGAGCTGTCCGTCGACAG..............................................................................	21	2	6.50	6.50	0.00	0.00	0.00	0.00
....................................AAGAGAGCTATCCGTCGACAGTCG...........................................................................	24	2	6.00	0.00	0.00	0.00	0.50	5.50
....................................AAGAGAGCTATCCGTCGGCAGT.............................................................................	22	2	6.00	4.00	0.00	0.00	0.00	2.00

droWil1

A--------CAAAATTGC-ATCCGAATAGCGAAATGAAGAGAGCTATCCGTCGACAGTCCAGTTTA-ATACATCCGAATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAATATTCGAAAATCGACGGTTTT	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
....................................AAGAGAGCTATCCGTCGACAGTC............................................................................	23	2	19620.50	4539.50	4837.00	375.50	9868.50
....................................AAGAGAGCTATCCGTCGACAGT.............................................................................	22	2	16983.00	3265.50	1157.50	126.50	12433.50
......................................................................................CTGTCATGGAATTGCTCTCTTTG..........................	23	2	9990.00	4543.00	4597.00	327.00	523.00
....................................AAGAGAGCTATCCGTCGACAG..............................................................................	21	2	8580.00	1778.50	302.50	43.00	6456.00
.......................................................................................TGTCATGGAATTGCTCTCTTTGT.........................	23	2	4314.50	2761.50	1448.00	58.50	46.50
.......................................................................................TGTCATGGAATTGCTCTCTTTG..........................	22	2	4286.00	3275.00	844.50	76.00	90.50
....................................AAGAGAGCTATCCGTCGACA...............................................................................	20	2	1984.50	1387.00	26.00	15.50	556.00
.......................................................................................TGTCATGGAATTGCTCTCTTT...........................	21	2	1883.00	1600.50	236.50	34.50	11.50
....................................AAGAGAGCTATCCGTCGACAGTCT...........................................................................	24	2	1319.50	813.50	217.00	80.50	208.50
....................................AAGAGAGCTATCCGTCGACAGG.............................................................................	22	2	1103.50	1.00	0.50	0.00	1102.00
....................................AAGAGAGCTATCCGTCGACAGC.............................................................................	22	2	889.00	11.50	2.00	1.50	874.00
....................................AAGAGAGCTATCCGTCGACAGTCC...........................................................................	24	2	869.50	419.50	70.00	11.50	368.50
......................................................................................CTGTCATGGAATTGCTCTCTTT...........................	22	2	818.00	676.00	70.50	34.00	37.50
.......................................................................................TGTCATGGAATTGCTCTCTTTGC.........................	23	2	673.00	569.50	70.50	5.50	27.50
....................................AAGAGAGCTATCCGTCGACAGTT............................................................................	23	2	671.50	254.50	40.50	20.00	356.50
....................................AAGAGAGCTATCCGTCGAC................................................................................	19	2	401.50	126.00	2.00	2.00	271.50
.......................................................................................TGTCATGGAATTGCTCTCTT............................	20	2	265.50	232.00	14.00	3.50	16.00
......................................................................................CTGTCATGGAATTGCTCTCTT............................	21	2	233.00	193.00	5.00	6.00	29.00
......................................................................................CTGTCATGGAATTGCTCTCTTTGT.........................	24	2	180.00	124.50	37.00	4.00	14.50
........................................................................................GTCATGGAATTGCTCTCTTTGT.........................	22	2	178.50	101.50	73.50	3.50	0.00
.......................................................................................TGTCATGGAATTGCTCTCTTTGA.........................	23	2	106.00	61.00	26.00	15.50	3.50
....................................AAGAGAGCTATCCGTCGACAC..............................................................................	21	2	105.50	2.00	0.00	0.00	103.50
.......................................................................................TGTCATGGAATTGCTCTCTTTGTT........................	24	2	102.50	68.50	27.50	2.00	4.50
......................................................................................CTGTCATGGAATTGCTCTCT.............................	20	2	95.00	54.50	3.00	3.00	34.50
.......................................................................................TGTCATGGAATTGCTCTCTTTT..........................	22	2	93.50	87.00	5.00	1.00	0.50
......................................................................................CTGTCATGGAATTGCTCTCTTTT..........................	23	2	91.50	64.00	24.00	1.00	2.50
....................................AAGAGAGCTATCCGTCGACAGTCA...........................................................................	24	2	85.00	29.00	15.50	2.00	38.50
......................................................................................CTGTCATGGAATTGCTCTCTTTGA.........................	24	2	78.50	20.50	32.00	15.50	10.50
........................................GAGCTATCCGTCGACAGTC............................................................................	19	2	65.00	0.50	0.00	0.00	64.50
....................................AAGAGAGCTATCCGTCGACAGTA............................................................................	23	2	47.00	9.00	10.50	1.00	26.50
........................................GAGCTATCCGTCGACAGT.............................................................................	18	2	46.00	0.00	0.50	0.00	45.50
.....................................AGAGAGCTATCCGTCGACAGTC............................................................................	22	2	38.00	4.00	5.00	0.50	28.50
.......................................................................................TGTCATGGAATTGCTCTCTTTGTA........................	24	2	36.50	11.00	21.50	2.00	2.00
....................................AAGAGAGCTATCGGTCGACAGT.............................................................................	22	2	35.00	0.00	0.00	0.00	35.00
....................................AAGAGGGCTATCCGTCGACAGTC............................................................................	23	2	34.50	7.50	8.50	1.00	17.50
....................................AAGAGAGCTATCAGTCGACAGTC............................................................................	23	2	34.00	0.50	8.00	1.00	24.50
.....................................AGAGAGCTATCCGTCGACAGT.............................................................................	21	2	33.50	4.00	3.00	0.50	26.00
....................................AAGAGAGCTATCCGTCGACAGA.............................................................................	22	2	32.50	27.50	1.50	0.50	3.00
....................................AAGAGAGCTATCCGTCGACAGTCCA..........................................................................	25	2	31.50	16.00	0.00	1.00	14.50
....................................AAGAGAGCTATCCGTCGACT...............................................................................	20	2	31.50	15.50	0.00	0.50	15.50
....................................AAGAGAGCTGTCCGTCGACAGTC............................................................................	23	2	30.50	11.50	11.50	3.00	4.50
........................................................................................GTCATGGAATTGCTCTCTTTG..........................	21	2	30.50	25.00	5.50	0.00	0.00
....................................AAGAGGGCTATCCGTCGACAGT.............................................................................	22	2	30.00	2.50	2.00	0.50	25.00
....................................AAGAGAGCTATCCGTCGACAGTCG...........................................................................	24	2	30.00	6.00	0.00	0.00	24.00
....................................AAGAGAGCTGTCCGTCGACAGT.............................................................................	22	2	29.00	16.50	6.00	2.00	4.50
....................................AAGAGAGCTATCGGTCGACAGTC............................................................................	23	2	28.50	0.00	0.00	0.00	28.50
....................................AAGAGAGCTATCCGTCGACAGAC............................................................................	23	2	28.50	1.00	0.00	0.50	27.00
....................................AAGAGATCTATCCGTCGACAGTC............................................................................	23	2	27.50	4.00	8.00	0.00	15.50
....................................AATAGAGCTATCCGTCGACAGTC............................................................................	23	2	27.00	3.50	8.00	0.50	15.00
....................................AAGGGAGCTATCCGTCGACAGT.............................................................................	22	2	25.00	4.50	2.50	0.00	18.00
.....................................AGAGAGCTGTCCGTCGACAGT.............................................................................	21	2	25.00	20.00	2.50	1.50	1.00
....................................AAGAGAGCTATCAGTCGACAGT.............................................................................	22	2	24.50	0.00	2.00	1.00	21.50
....................................AAGAGAGCTATCCGTCGACAGCC............................................................................	23	2	24.00	8.00	5.00	2.00	9.00
....................................AAGAGAGCTATCCGCCGACAGTC............................................................................	23	2	24.00	7.00	11.50	1.00	4.50
....................................AAGAGAGCTATCCGTCTACAGTC............................................................................	23	2	22.50	8.00	7.50	1.50	5.50
....................................AAGAGAGCTATCCGTCGACGG..............................................................................	21	2	22.50	1.50	0.50	0.00	20.50
....................................AAGGGAGCTATCCGTCGACAGTC............................................................................	23	2	22.00	4.50	7.00	1.00	9.50
....................................AGGAGAGCTATCCGTCGACAGTC............................................................................	23	2	21.00	4.50	6.50	0.00	10.00
....................................AAGAGATCTATCCGTCGACAGT.............................................................................	22	2	20.50	1.50	2.50	0.00	16.50
....................................AAGAGAGCTATCCGTCGACAGTCCT..........................................................................	25	2	20.50	16.00	1.50	1.00	2.00
....................................AAGAGAGCTACCCGTCGACAGTC............................................................................	23	2	20.00	5.00	5.00	0.00	10.00
....................................AAGATAGCTATCCGTCGACAGTC............................................................................	23	2	20.00	4.00	9.00	0.50	6.50
.......................................................................................TGTCATGGAATTGCTCTCT.............................	19	2	19.50	10.50	0.00	2.00	7.00
......................................................................................CTGTCATGGAATTGCTCTCCTTG..........................	23	2	19.50	11.00	6.50	2.00	0.00
....................................AAGAGAGCTATCCGTCAACAGTC............................................................................	23	2	19.00	5.00	4.50	1.50	8.00
......................................................................................CTGCCATGGAATTGCTCTCTTTG..........................	23	2	19.00	11.50	6.50	0.00	1.00
....................................AAGAGAGCTATCGGTCGACAG..............................................................................	21	2	18.50	0.50	0.00	0.00	18.00
....................................AATAGAGCTATCCGTCGACAGT.............................................................................	22	2	18.50	1.50	1.00	0.50	15.50
....................................AAGAGAGCTGTCCGTCGACAG..............................................................................	21	2	17.50	11.50	1.50	0.50	4.00
......................................................................................CTGTCATGGAATTGCCCTCTTTG..........................	23	2	17.00	7.00	8.50	1.00	0.50
....................................AAGAGACCTATCCGTCGACAGTC............................................................................	23	2	17.00	3.50	3.50	0.50	9.50
......................................AAGAGCTATCCGTCGACAGTC............................................................................	21	2	16.50	6.50	4.00	0.50	5.50
....................................AAGAGAGCTATCCGTCGACAGTTT...........................................................................	24	1	32.00	21.00	1.00	0.00	10.00
....................................AGGAGAGCTATCCGTCGACAGT.............................................................................	22	2	16.00	5.00	0.50	0.00	10.50
....................................AAGGGAGCTATCCGTCGACAG..............................................................................	21	2	15.50	1.50	1.00	0.00	13.00
......................................................................................ATGTCATGGAATTGCTCTCTTTG..........................	23	2	15.00	1.00	14.00	0.00	0.00
......................................................................................CTGTCATGGAATTGCTCTCTTTGC.........................	24	2	15.00	10.00	1.50	0.00	3.50
....................................AAGAGAGCTATCCGTCGACG...............................................................................	20	2	15.00	0.50	0.50	0.00	14.00
.......................................................................................TGTCATGGAATTGCTCTCTTTTT.........................	23	2	14.50	11.50	2.50	0.00	0.50
....................................AAGAGAGCTATCTGTCGACAGTC............................................................................	23	2	14.50	5.50	4.00	0.50	4.50
....................................AAGAGAGCTATCAGTCGACAG..............................................................................	21	2	14.50	0.00	0.50	0.00	14.00
....................................AAGAGAGCTATCCGTCGACATTC............................................................................	23	2	14.00	5.00	5.50	1.00	2.50
....................................AAGAGAGCTACCCGTCGACAGT.............................................................................	22	2	13.50	1.50	0.50	0.00	11.50
....................................AAGAGAGCTATCCGTTGACAGTC............................................................................	23	2	13.50	3.00	6.00	0.50	4.00
....................................AAGAGAGCCATCCGTCGACAGTC............................................................................	23	2	13.00	4.00	2.50	1.00	5.50
....................................AAGAGAGCTATCCATCGACAGTC............................................................................	23	2	12.50	4.00	3.00	1.00	4.50
......................................................................................CTGTCATGGAGTTGCTCTCTTTG..........................	23	2	12.50	5.00	6.00	1.00	0.50
......................................................................................CTGTCATGGACTTGCTCTCTTTG..........................	23	2	12.50	6.00	6.00	0.50	0.00
....................................AAGAGAGCTATCCGTAGACAGTC............................................................................	23	2	12.50	2.50	8.50	0.50	1.00
....................................AAGAGGGCTATCCGTCGACAG..............................................................................	21	2	12.50	2.00	0.00	0.00	10.50
....................................AAGAGAGCTATCCGCCGACAGT.............................................................................	22	2	12.00	4.00	1.50	0.00	6.50
....................................AAGAGAGCTATCCGTCTACAGT.............................................................................	22	2	11.50	7.00	2.50	0.00	2.00
....................................AAGAGAGCTATCCGTCGGCAGTC............................................................................	23	2	11.50	3.00	4.50	0.00	4.00
....................................AAGAGAGCCATCCGTCGACAGT.............................................................................	22	2	11.50	1.50	1.00	0.50	8.50
....................................GAGAGAGCTATCCGTCGACAGTC............................................................................	23	2	11.50	3.50	2.50	1.00	4.50
.....................................AGAGAGCTGTCCGTCGACAGTC............................................................................	22	2	11.50	4.50	6.00	1.00	0.00
......................................................................................CTGTCATGGAATTGCTCCCTTTG..........................	23	2	11.50	6.00	4.00	1.00	0.50
......................................................................................CCGTCATGGAATTGCTCTCTTTG..........................	23	2	11.00	4.50	6.00	0.00	0.50
......................................................................................CTGTCACGGAATTGCTCTCTTTG..........................	23	2	11.00	3.50	6.00	1.00	0.50
....................................AAGACAGCTATCCGTCGACAGTC............................................................................	23	2	11.00	2.00	4.00	0.00	5.00
....................................AAGAGAGCTATCCGTCCACAGTC............................................................................	23	2	10.50	4.50	3.50	0.50	2.00

droVir3

CTA----ACCAAAC--T---TGCGAATAGCGAAATGAAGAGAGCTATCCGTCGACAGTCAAGCT-A--TA----CAGATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAATATTCGAAAAGCGACGAC---	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
....................................AAGAGAGCTATCCGTCGACAGT.............................................................................	22	2	97437.00	11147.50	68.50	38.50	84237.50	1945.00
....................................AAGAGAGCTATCCGTCGACAGTC............................................................................	23	2	75253.50	13872.00	116.50	102.00	58978.50	2184.50
....................................AAGAGAGCTATCCGTCGACAG..............................................................................	21	2	51372.00	3752.50	34.00	7.00	46598.00	980.50
....................................AAGAGAGCTATCCGTCGACAGG.............................................................................	22	2	11619.50	38.50	0.00	0.00	11332.50	248.50
......................................................................................CTGTCATGGAATTGCTCTCTTTG..........................	23	2	10403.50	8541.00	137.50	256.50	1394.00	74.50
.......................................................................................TGTCATGGAATTGCTCTCTTTG..........................	22	2	7424.50	6941.50	88.50	93.50	289.00	12.00
....................................AAGAGAGCTATCCGTCGACA...............................................................................	20	2	7382.50	2069.00	9.50	0.50	5209.50	94.00
....................................AAGAGAGCTATCCGTCGACAGC.............................................................................	22	2	6327.50	44.00	0.00	0.50	6088.50	194.50
.......................................................................................TGTCATGGAATTGCTCTCTTTGT.........................	23	2	5795.00	5497.50	71.00	102.00	119.50	5.00
....................................AAGAGAGCTATCCGTCGACAGTCT...........................................................................	24	2	5129.00	2688.50	8.50	9.50	2365.00	57.50
....................................AAGAGAGCTATCCGTCGACAGTT............................................................................	23	2	3916.00	887.50	1.50	2.00	2941.50	83.50
.......................................................................................TGTCATGGAATTGCTCTCTTT...........................	21	2	3018.00	2941.50	24.50	4.00	47.50	0.50
....................................AAGAGAGCTATCCGTCGAC................................................................................	19	2	2861.00	166.00	2.00	0.00	2642.00	51.00
......................................................................................CTGTCATGGAATTGCTCTCTTT...........................	22	2	1769.00	1609.00	17.00	5.50	131.50	6.00
....................................AAGAGAGCTATCCGTCGACAGTCC...........................................................................	24	2	936.00	267.50	3.50	0.00	639.50	25.50
....................................AAGAGAGCTATCCGTCGACAC..............................................................................	21	2	601.00	4.00	0.00	0.00	576.00	21.00
....................................AAGAGAGCTATCCGTCGACAGTCA...........................................................................	24	1	1143.00	396.00	2.00	0.00	716.00	29.00
........................................GAGCTATCCGTCGACAGTC............................................................................	19	2	505.00	2.00	0.00	0.00	488.50	14.50
......................................................................................CTGTCATGGAATTGCTCTCTTTT..........................	23	2	423.50	384.50	4.00	25.00	9.00	1.00
......................................................................................CTGTCATGGAATTGCTCTCTTTGT.........................	24	2	414.00	352.50	7.00	4.50	48.50	1.50
.......................................................................................TGTCATGGAATTGCTCTCTTTT..........................	22	2	408.50	395.50	5.00	7.00	1.00	0.00
........................................GAGCTATCCGTCGACAGT.............................................................................	18	2	384.00	0.50	0.00	0.00	380.00	3.50
......................................................................................CTGTCATGGAATTGCTCTCTT............................	21	2	374.00	262.00	4.50	0.00	96.50	11.00
....................................AAGAGAGCTATCCGTCGACGG..............................................................................	21	2	344.00	4.50	0.00	0.00	333.50	6.00
.......................................................................................TGTCATGGAATTGCTCTCTTTGTC........................	24	2	330.00	259.00	8.00	1.50	55.50	6.00
....................................AAGAGAGCTATCCGTCGACAGAC............................................................................	23	2	246.00	13.00	0.00	0.00	223.00	10.00
....................................AAGAGAGCTATCCGTCGACG...............................................................................	20	2	245.00	3.00	0.00	0.00	239.00	3.00
.......................................................................................TGTCATGGAATTGCTCTCTT............................	20	2	231.50	205.50	1.50	0.50	21.50	2.50
....................................AAGAGAGCTATCCGTCGACCGT.............................................................................	22	2	229.00	12.50	0.00	0.50	215.00	1.00
....................................AAGAGAGCTATCCGTCGACAGTA............................................................................	23	2	199.50	49.50	1.00	0.50	143.50	5.00
....................................AAGAGAGCTATCCGTCGACAGTCG...........................................................................	24	2	196.50	8.50	0.00	0.00	184.50	3.50
....................................AAGGGAGCTATCCGTCGACAGT.............................................................................	22	2	183.50	9.50	0.00	0.00	169.00	5.00
....................................AAGAGGGCTATCCGTCGACAGT.............................................................................	22	2	177.50	9.50	0.00	0.00	162.00	6.00
.......................................................................................TGTCATGGAATTGCTCTCTTTGA.........................	23	2	162.00	146.50	3.00	5.50	5.50	1.50
.......................................................................................TGTCATGGAATTGCTCTCTTTGTT........................	24	2	157.50	138.00	0.50	2.50	15.50	1.00
....................................AAGAGAGCTATCCGTCGACAGCC............................................................................	23	2	151.50	40.50	4.00	1.00	102.00	4.00
....................................AAGAGAGCTATCCGTCGACCGTC............................................................................	23	2	151.50	5.50	0.50	2.00	139.00	4.50
......................................................................................CTGTCATGGAATTGCTCTCT.............................	20	2	150.00	61.50	2.00	0.00	78.00	8.50
....................................AAGAGAGCTATCCGTCGACT...............................................................................	20	2	145.00	23.00	0.00	0.00	121.50	0.50
....................................AAGAGAGCTATCCGTCGACAGTTT...........................................................................	24	1	276.00	129.00	1.00	0.00	142.00	4.00
....................................AAGAGGGCTATCCGTCGACAGTC............................................................................	23	2	137.00	13.50	0.00	0.00	119.00	4.50
....................................AAGGGAGCTATCCGTCGACAGTC............................................................................	23	2	134.50	15.00	0.50	0.50	114.00	4.50
....................................AAGAGAGCTATCCGTCGACCG..............................................................................	21	2	129.50	7.50	0.50	0.00	119.50	2.00
.....................................AGAGAGCTATCCGTCGACAGTC............................................................................	22	2	119.50	19.00	1.50	0.00	95.50	3.50
....................................AAGAGAGCTATCCGTCGACAGA.............................................................................	22	2	118.50	83.00	0.50	0.00	35.00	0.00
....................................AGGAGAGCTATCCGTCGACAGT.............................................................................	22	2	118.00	6.00	0.00	0.00	109.00	3.00
.......................................................................................TGTCATGGAATTGCTCTCTTTGC.........................	23	2	113.00	94.50	1.00	0.50	15.50	1.50
....................................AAGAGAGCTATACGTCGACAGT.............................................................................	22	2	109.50	3.50	0.00	0.00	105.00	1.00
.....................................AGAGAGCTATCCGTCGACAGT.............................................................................	21	2	104.50	10.50	0.00	0.00	90.00	4.00
....................................AATAGAGCTATCCGTCGACAGT.............................................................................	22	2	99.00	6.00	0.00	0.50	89.00	3.50
......................................................................................CTGTCATGGAATTGCTCTCTTTGA.........................	24	2	97.50	38.50	1.00	4.00	51.00	3.00
....................................AAGAGAGCTACCCGTCGACAGT.............................................................................	22	2	96.50	9.00	0.00	0.00	87.00	0.50
....................................AAGAGAGCTACCCGTCGACAGTC............................................................................	23	2	95.00	15.50	0.00	0.00	76.50	3.00
....................................AAGAGGGCTATCCGTCGACAG..............................................................................	21	2	93.50	2.50	0.00	0.00	89.50	1.50
....................................AAGGGAGCTATCCGTCGACAG..............................................................................	21	2	93.00	2.50	0.00	0.00	87.50	3.00
....................................AATAGAGCTATCCGTCGACAGTC............................................................................	23	2	92.50	7.50	0.00	0.50	81.00	3.50
........................................................................................GTCATGGAATTGCTCTCTTTGT.........................	22	2	90.00	85.50	2.00	1.00	1.50	0.00
....................................AAGAGAGCTATCCGCCGACAGT.............................................................................	22	2	87.50	22.50	0.00	0.00	63.50	1.50
....................................AAGAGATCTATCCGTCGACAGT.............................................................................	22	2	84.50	7.00	0.00	0.00	77.00	0.50
....................................AGGAGAGCTATCCGTCGACAGTC............................................................................	23	2	82.50	13.00	0.00	0.50	66.50	2.50
....................................AAGAGAGCTATCCGTCAACAGTC............................................................................	23	2	79.50	31.50	0.50	0.00	45.00	2.50
....................................AAGAGAGCTATCCGTCGAAAGTC............................................................................	23	2	78.50	17.50	0.00	0.00	58.00	3.00
....................................AAGAGAGCCATCCGTCGACAGT.............................................................................	22	2	74.00	4.00	0.00	0.00	68.00	2.00
....................................AAGAGAGCTATCCGCCGACAGTC............................................................................	23	2	71.50	28.50	2.00	1.00	38.00	2.00
....................................AAGAGATCTATCCGTCGACAGTC............................................................................	23	2	71.00	5.50	0.00	0.00	65.00	0.50
....................................AAGAGAGCTATACGTCGACAG..............................................................................	21	2	69.00	2.50	0.00	0.00	64.50	2.00
....................................AAGAGAGCTGTCCGTCGACAGT.............................................................................	22	2	68.00	20.50	0.00	0.50	46.50	0.50
....................................AGGAGAGCTATCCGTCGACAG..............................................................................	21	2	67.50	3.50	0.00	0.00	63.50	0.50
....................................AAGAGAGCTATCCGTCGGCAGT.............................................................................	22	2	63.00	10.00	0.50	0.00	51.00	1.50
....................................AAGAGAGCTATCCGTCGACAA..............................................................................	21	2	60.00	8.00	0.00	0.00	49.00	3.00
....................................AAGAGAGCTATCCGTCAACAGT.............................................................................	22	2	60.00	23.00	0.00	0.00	36.00	1.00
....................................AAGAGAGCTATCCGTCGACAGTAA...........................................................................	24	1	117.00	18.00	0.00	0.00	94.00	5.00
....................................AAGAGAGCCATCCGTCGACAGTC............................................................................	23	2	56.50	8.50	0.50	0.50	44.00	3.00
....................................AAGATAGCTATCCGTCGACAGTC............................................................................	23	2	56.00	8.50	0.00	0.50	46.00	1.00
.......................................................................................TGTCATGGAATTGCTCTCTTTTT.........................	23	2	54.00	47.00	1.00	6.00	0.00	0.00
........................................GAGCTATCCGTCGACAGG.............................................................................	18	2	53.00	0.00	0.00	0.00	51.50	1.50
....................................AAGAGAGCTATCCGTCGACAGGC............................................................................	23	2	52.50	34.00	0.50	1.00	17.00	0.00
....................................AAGAGAGCTATCCGTCTACAGTC............................................................................	23	2	52.50	20.50	0.00	2.00	29.00	1.00
....................................AAGAGAGCTATCCGTCGGCAGTC............................................................................	23	2	52.00	13.50	0.00	0.00	36.00	2.50
....................................AAGAGAGCTATACGTCGACAGTC............................................................................	23	2	51.00	14.00	0.00	0.00	37.00	0.00
....................................AAGAGAGCTATCCGTCGACAGTCTT..........................................................................	25	1	101.00	20.00	1.00	0.00	77.00	3.00
....................................AAGAGAGCTATCCGCCGACAG..............................................................................	21	2	47.00	8.00	1.00	0.00	38.00	0.00
....................................AAGAGAGCTATCCGTCGAAAGT.............................................................................	22	2	46.50	7.00	0.50	0.50	37.00	1.50
....................................AAGAGAGCTATCCATCGACAGT.............................................................................	22	2	44.50	11.00	1.50	0.00	31.00	1.00
....................................AACAGAGCTATCCGTCGACAGT.............................................................................	22	2	43.50	1.50	0.00	0.00	42.00	0.00
....................................AAGAGAGCTGTCCGTCGACAGTC............................................................................	23	2	43.00	15.50	0.00	0.00	27.00	0.50
....................................GAGAGAGCTATCCGTCGACAGTC............................................................................	23	2	43.00	11.00	0.00	0.00	31.00	1.00
....................................AAGAGAGCTATCTGTCGACAGTC............................................................................	23	2	41.00	8.50	0.00	0.00	29.50	3.00
....................................AAGAGAGCTATCCGTCCACAGTC............................................................................	23	2	40.50	25.00	0.00	0.50	14.50	0.50
....................................AAGAGAGCTATCCATCGACAGTC............................................................................	23	2	40.00	13.00	0.00	0.50	25.00	1.50
....................................AAGAGAGCTATCCGTCGA.................................................................................	18	2	39.00	7.50	0.00	0.50	31.00	0.00
.......................................................................................TGTCATGGAATTGCTCTCT.............................	19	2	39.00	14.50	0.50	0.50	21.50	2.00
....................................AAGAGAGCTATCTGTCGACAGT.............................................................................	22	2	39.00	4.50	0.50	0.00	34.00	0.00
....................................AAGAGAGCTATCCGTCGACAGTG............................................................................	23	2	38.00	10.00	0.50	1.00	26.50	0.00
....................................AAGAGAGCTACCCGTCGACAG..............................................................................	21	2	37.50	5.50	0.00	0.00	31.00	1.00
....................................AAGAGAGCTATCCGTCGACGGT.............................................................................	22	2	37.50	9.00	0.50	0.00	27.50	0.50
....................................AAGAGAGCTATCCGTCGGCAG..............................................................................	21	2	37.00	3.50	0.00	0.00	33.50	0.00
....................................AAGAGAGCCATCCGTCGACAG..............................................................................	21	2	36.50	1.50	0.50	0.00	34.00	0.50
....................................AAGAGAGCTATCCGTCGACC...............................................................................	20	2	35.50	1.50	0.00	0.00	31.50	2.50
....................................AAGAGAGCTATCCGTCGACAATC............................................................................	23	2	35.00	14.00	0.00	0.00	20.50	0.50
......................................AAGAGCTATCCGTCGACAGTC............................................................................	21	2	35.00	10.00	0.00	0.00	24.50	0.50

droMoj3

---------------------GCGAATAGCGAAATGAAGAGAGCTATCCGTCGACAGTCAAGTT-ATATA----CATATTTTAATACTGTCATGGAATTGCTCTCTTTGTATAATATTCGAAAATCGACGAT---	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
....................................AAGAGAGCTATCCGTCGACAGTC............................................................................	23	2	10265.00	9557.00	300.00	197.50	210.50
......................................................................................CTGTCATGGAATTGCTCTCTTTG..........................	23	2	8846.50	8220.50	241.50	155.00	229.50
....................................AAGAGAGCTATCCGTCGACAGT.............................................................................	22	2	5461.00	5207.50	137.50	78.00	38.00
.......................................................................................TGTCATGGAATTGCTCTCTTTG..........................	22	2	3729.50	3447.00	139.00	97.00	46.50
....................................AAGAGAGCTATCCGTCGACAGTCT...........................................................................	24	2	3707.50	3622.50	42.00	25.00	18.00
.......................................................................................TGTCATGGAATTGCTCTCTTTGT.........................	23	2	3012.00	2669.00	158.00	84.00	101.00
......................................................................................CTGTCATGGAATTGCTCTCTTT...........................	22	2	1514.00	1460.50	29.50	20.50	3.50
....................................AAGAGAGCTATCCGTCGACAG..............................................................................	21	2	1461.50	1376.00	38.00	45.00	2.50
.......................................................................................TGTCATGGAATTGCTCTCTTT...........................	21	2	1216.50	1140.50	38.00	34.50	3.50
....................................AAGAGAGCTATCCGTCGACAGTT............................................................................	23	2	1107.50	1077.50	16.50	11.50	2.00
....................................AAGAGAGCTATCCGTCGACA...............................................................................	20	2	948.00	909.00	19.00	19.50	0.50
.......................................................................................TGTCATGGAATTGCTCTCTTTGTC........................	24	2	468.50	406.00	37.50	24.00	1.00
....................................AAGAGAGCTATCCGTCGACAGTCC...........................................................................	24	2	444.50	427.50	7.00	6.00	4.00
......................................................................................CTGTCATGGAATTGCTCTCTT............................	21	2	406.50	387.50	8.50	8.50	2.00
........................................................................................GTCATGGAATTGCTCTCTTTGT.........................	22	2	260.50	250.00	3.50	2.00	5.00
......................................................................................CTGTCATGGAATTGCTCTCTTTGT.........................	24	2	217.50	200.50	4.50	5.00	7.50
.......................................................................................TGTCATGGAATTGCTCTCTTTGC.........................	23	2	205.50	185.00	9.00	8.00	3.50
......................................................................................CTGTCATGGAATTGCTCTCTTTT..........................	23	2	186.50	168.00	3.00	12.00	3.50
......................................................................................CTGTCATGGAATTGCTCTCT.............................	20	2	179.50	172.50	5.50	1.00	0.50
.......................................................................................TGTCATGGAATTGCTCTCTTTC..........................	22	2	171.00	156.50	7.00	7.50	0.00
......................................................................................CTGTCATGGAATTGCTCTCTTTC..........................	23	2	138.50	132.50	3.00	3.00	0.00
....................................AAGAGAGCTATCCGTCGAC................................................................................	19	2	133.50	129.50	1.50	2.50	0.00
.......................................................................................TGTCATGGAATTGCTCTCTTTT..........................	22	2	132.00	119.50	4.00	8.00	0.50
....................................AAGAGAGCTATCCGTCGACAGTCA...........................................................................	24	1	256.00	244.00	4.00	7.00	1.00
.......................................................................................TGTCATGGAATTGCTCTCTTTGTT........................	24	2	105.50	99.00	1.50	1.00	4.00
.......................................................................................TGTCATGGAATTGCTCTCTTTGA.........................	23	2	86.00	81.50	1.00	2.00	1.50
...................................................................................ATACTGTCATGGAATTGCTCTCT.............................	23	2	71.00	62.50	3.50	2.00	3.00
.......................................................................................TGTCATGGAATTGCTCTCTT............................	20	2	59.50	56.00	1.00	2.50	0.00
......................................................................................CTGTCATGGAATTGCTCTCTTTGA.........................	24	2	54.50	48.50	2.00	0.00	4.00
....................................AAGAGAGCTATCCGTCGACAGTTT...........................................................................	24	1	103.00	103.00	0.00	0.00	0.00
........................................................................................GTCATGGAATTGCTCTCTTTG..........................	21	2	39.00	38.50	0.00	0.00	0.50
......................................................................................CTGTCATGGAATTGCTCTCTTTGC.........................	24	2	37.00	33.50	2.00	1.50	0.00
....................................AAGAGAGCTATCCGTCGACAGA.............................................................................	22	2	36.00	32.50	2.00	1.00	0.50
....................................AAGAGAGCTATCCGTCGACAGTA............................................................................	23	2	35.50	31.00	2.00	2.00	0.50
....................................AAGAGAGCTATCCGTCGACT...............................................................................	20	2	33.00	31.00	1.00	1.00	0.00
....................................AAGAGAGCTGTCCGTCGACAGTC............................................................................	23	2	27.00	25.00	0.00	0.00	2.00
....................................AAGAGAGCTATCCGTCGACAGC.............................................................................	22	2	25.00	22.00	2.50	0.00	0.50
....................................AAGAGAGCTATCCGTCGACAGCC............................................................................	23	2	23.50	17.00	4.00	2.00	0.50
.......................................................................................TGTCATGGAATTGCTCTCTTTGTA........................	24	2	21.50	19.00	0.00	0.00	2.50
....................................AAGAGAGCTATCCGTCGACAGTCCT..........................................................................	25	2	20.00	20.00	0.00	0.00	0.00
......................................................................................CTGCCATGGAATTGCTCTCTTTG..........................	23	2	18.50	15.00	2.00	1.50	0.00
....................................AAGAGAGCTATCCGTCTACAGTC............................................................................	23	2	18.00	17.00	0.50	0.50	0.00
......................................................................................CTGTCATGGAATTGCTCTCTTTGTC........................	25	2	17.50	16.00	0.50	0.50	0.50
...................................................................................ATACTGTCATGGAATTGCTCT...............................	21	2	14.50	12.50	0.50	1.50	0.00
...................................................................................ATACTGTCATGGAATTGCTCTC..............................	22	2	14.50	13.50	1.00	0.00	0.00
......................................................................................CTGTCATGGAATTGCTCTCTTC...........................	22	2	14.50	13.50	1.00	0.00	0.00
.......................................................................................TGTCATGGAATTGCTCTCTTTTT.........................	23	2	14.50	7.00	2.50	4.00	1.00
....................................AAGAGGGCTATCCGTCGACAGTC............................................................................	23	2	14.00	13.50	0.00	0.50	0.00
.......................................................................................TGTCATGGAATTGCTCTCTTTGTCT.......................	25	2	14.00	13.50	0.50	0.00	0.00
.....................................AGAGAGCTATCCGTCGACAGTC............................................................................	22	2	13.50	11.50	1.50	0.50	0.00
....................................AATAGAGCTATCCGTCGACAGTC............................................................................	23	2	13.50	13.00	0.50	0.00	0.00
.......................................................................................TGTCATGGAATTGCTCTCTTTTC.........................	23	2	13.50	13.00	0.00	0.50	0.00
....................................AAGAGAGCTGTCCGTCGACAGT.............................................................................	22	2	13.50	13.00	0.50	0.00	0.00
....................................AAGAGAGCTATCCGTCGACCGTC............................................................................	23	2	13.00	0.50	0.50	9.00	3.00
......................................................................................CTGTCATGGAATTGCTCTCTTTTT.........................	24	2	12.50	11.50	1.00	0.00	0.00
....................................AAGAGAGCTATCCGTCGACAGTCTT..........................................................................	25	1	25.00	24.00	1.00	0.00	0.00
.......................................................................................TGTCATGGAATTGCTCTCTTTGTCA.......................	25	2	12.50	11.00	0.00	0.50	1.00
....................................AAGGGAGCTATCCGTCGACAGTC............................................................................	23	2	12.00	10.00	1.50	0.50	0.00
.....................................AGAGAGCTGTCCGTCGACAGT.............................................................................	21	2	11.50	10.00	0.50	1.00	0.00
......................................................................................CTGTCATGGAATTGCTCTCTTTA..........................	23	2	11.00	9.50	0.50	0.50	0.50
......................................................................................CTGTCATGAAATTGCTCTCTTTG..........................	23	2	11.00	10.50	0.00	0.50	0.00
......................................................................................CTGTCATGGAATTGCCCTCTTTG..........................	23	2	10.50	9.50	0.50	0.00	0.50
.......................................................................................TGTCATGGAATTGCTCTCTTC...........................	21	2	10.50	10.00	0.50	0.00	0.00
....................................AAGAGAGCTATCCGTCGACAGCCT...........................................................................	24	1	20.00	18.00	2.00	0.00	0.00
......................................................................................CTGTCATGGGATTGCTCTCTTTG..........................	23	2	10.00	8.00	1.00	1.00	0.00
....................................AAGAGAGCTATCCGTTGACAGTC............................................................................	23	2	10.00	9.00	0.00	0.50	0.50
....................................AAGAGAGCTATCCGTCGACAGTCCA..........................................................................	25	2	10.00	9.50	0.00	0.00	0.50
....................................AAGAGAGCTATCCGTTGACAGT.............................................................................	22	2	9.50	9.00	0.00	0.00	0.50
....................................AAGAGAGCTATCCGTCGA.................................................................................	18	2	9.50	6.50	2.00	1.00	0.00
....................................AAGAGAGCTATCCGTCAACAGTC............................................................................	23	2	9.50	7.00	2.00	0.00	0.50
....................................AGGAGAGCTATCCGTCGACAGTC............................................................................	23	2	9.50	8.00	0.50	1.00	0.00
....................................AAGAGAGCTATCCGCCGACAGTC............................................................................	23	2	9.00	7.00	1.00	0.50	0.50
........................................................................................GTCATGGAATTGCTCTCTTTGTC........................	23	2	9.00	8.50	0.50	0.00	0.00
....................................AAGATAGCTATCCGTCGACAGTC............................................................................	23	2	9.00	9.00	0.00	0.00	0.00
.....................................AGAGAGCTGTCCGTCGACAGTC............................................................................	22	2	9.00	7.50	0.00	0.00	1.50
.......................................AGAGCTATCCGTCGACAGTCAAGTT-A.....................................................................	26	1	17.00	15.00	1.00	0.00	1.00
......................................................................................CTGTCATGGAATTGCTCTCTTTTC.........................	24	2	8.50	7.50	0.00	1.00	0.00
....................................AAGAGAGCTATCCGTCTACAGT.............................................................................	22	2	8.50	8.50	0.00	0.00	0.00
....................................AAGAGATCTATCCGTCGACAGTC............................................................................	23	2	8.50	8.00	0.00	0.50	0.00
....................................AAAAGAGCTATCCGTCGACAGTC............................................................................	23	2	8.50	8.00	0.00	0.00	0.50
....................................GAGAGAGCTATCCGTCGACAGTC............................................................................	23	2	8.50	8.50	0.00	0.00	0.00
....................................AAGAGAGCTATCCGTCTACAGTCT...........................................................................	24	1	16.00	16.00	0.00	0.00	0.00
.....................................AGAGAGCTATCCGTCGACAGT.............................................................................	21	2	8.00	6.50	1.00	0.50	0.00
.......................................................................................TGTCATGGAATTGCTCTCTTTGTTC.......................	25	2	8.00	7.50	0.00	0.00	0.50
.....................................AGAGAGCTATCCGTCGACAGTCT...........................................................................	23	2	8.00	7.50	0.00	0.50	0.00
....................................AAGAGAGCTATCCGTCGACATTC............................................................................	23	2	7.50	6.50	0.50	0.50	0.00
....................................AAGAGAGCTATCCGTCGGCAGTC............................................................................	23	2	7.50	4.00	0.50	2.00	1.00
....................................AAGAGAGCTATCTGTCGACAGTC............................................................................	23	2	7.50	6.50	0.50	0.50	0.00
....................................AAGAGAGCTACCCGTCGACAGTC............................................................................	23	2	7.50	7.00	0.50	0.00	0.00
......................................................................................CTGTCATGGAATTGCTCTATTTG..........................	23	2	7.50	6.50	0.50	0.50	0.00
......................................................................................CTGTCATGGAATTGCTCTCTTCG..........................	23	2	7.50	6.00	0.00	1.00	0.50
....................................AAGAGAGCTACCCGTCGACAGT.............................................................................	22	2	7.00	6.50	0.50	0.00	0.00
...................................CAAGAGAGCTATCCGTCGACAGTC............................................................................	24	2	7.00	6.50	0.00	0.00	0.50
....................................AAGAGAGCTATCCGTCGCCAGTC............................................................................	23	2	7.00	2.00	2.00	2.00	1.00
.......................................................................................TGGCATGGAATTGCTCTCTTTG..........................	22	2	7.00	1.50	4.00	1.50	0.00
......................................................................................CTGTCATGGCATTGCTCTCTTTG..........................	23	2	7.00	3.50	0.00	2.00	1.50
....................................AAGATAGCTATCCGTCGACAGT.............................................................................	22	2	7.00	7.00	0.00	0.00	0.00
......................................................................................CTGTCATTGAATTGCTCTCTTTG..........................	23	2	7.00	7.00	0.00	0.00	0.00
....................................AAGAGAGCTATCCGTCGACCGT.............................................................................	22	2	7.00	1.00	1.00	3.50	1.50
....................................AAGAGAGCTGTCCGTCGACAG..............................................................................	21	2	6.50	6.00	0.00	0.50	0.00
....................................AAGAGAGCTATCCTTCGACAGTC............................................................................	23	2	6.50	5.50	0.00	0.50	0.50

droGri2

TTT----CACAACA--AA-TTACGAATAGCGAAATGAAGAGAGCTATCCGTCGACAGTCAAGTT-ATATA----CCGATTGTAATACTGTCATGGAATTGCTCTCTTTGTATAATATTCGAAAAGCGACGAT---	Size	Hit Count	Total Norm	V109 Male body
.......................................................................................TGTCATGGAATTGCTCTCTTTG..........................	22	2	1567.00	1567.00
....................................AAGAGAGCTATCCGTCGACAGTC............................................................................	23	2	1338.00	1338.00
....................................AAGAGAGCTATCCGTCGACAGT.............................................................................	22	2	1048.50	1048.50
......................................................................................CTGTCATGGAATTGCTCTCTTTG..........................	23	2	1024.00	1024.00
.......................................................................................TGTCATGGAATTGCTCTCTTTGT.........................	23	2	717.00	717.00
.......................................................................................TGTCATGGAATTGCTCTCTTT...........................	21	2	477.50	477.50
....................................AAGAGAGCTATCCGTCGACAGTCT...........................................................................	24	2	424.50	424.50
......................................................................................CTGTCATGGAATTGCTCTCTTT...........................	22	2	284.50	284.50
....................................AAGAGAGCTATCCGTCGACAG..............................................................................	21	2	197.50	197.50
....................................AAGAGAGCTATCCGTCGACA...............................................................................	20	2	153.00	153.00
....................................AAGAGAGCTATCCGTCGACAGTT............................................................................	23	2	116.50	116.50
......................................................................................CTGTCATGGAATTGCTCTCTT............................	21	2	72.00	72.00
.......................................................................................TGTCATGGAATTGCTCTCTTTGC.........................	23	2	55.00	55.00
.......................................................................................TGTCATGGAATTGCTCTCTTTGTT........................	24	2	40.50	40.50
.......................................................................................TGTCATGGAATTGCTCTCTTTT..........................	22	2	39.50	39.50
......................................................................................CTGTCATGGAATTGCTCTCTTTT..........................	23	2	34.00	34.00
....................................AAGAGAGCTATCCGTCGACAGTCC...........................................................................	24	2	31.50	31.50
.......................................................................................TGTCATGGAATTGCTCTCTT............................	20	2	26.50	26.50
......................................................................................CTGTCATGGAATTGCTCTCT.............................	20	2	24.00	24.00
.......................................................................................TGTCATGGAATTGCTCTCTTTGA.........................	23	2	22.00	22.00
........................................................................................GTCATGGAATTGCTCTCTTTGT.........................	22	2	19.00	19.00
....................................AAGAGAGCTATCCGTCGAC................................................................................	19	2	17.50	17.50
....................................AAGAGAGCTATCCGTCGACAGTA............................................................................	23	2	14.50	14.50
....................................AAGAGAGCTATCCGTCGCCAGT.............................................................................	22	2	14.00	14.00
....................................AAGAGAGCTATCCGTCGACAGTCA...........................................................................	24	1	26.00	26.00
.......................................................................................TGTCATGGAATTGCTCTATTTG..........................	22	2	12.50	12.50
....................................AAGAGAGCTATCCGTCGACAGTG............................................................................	23	2	11.50	11.50
......................................................................................CTGTCATGGAATTGCTCTCTTTGT.........................	24	2	10.50	10.50
....................................AAGAGAGCTATCCGTCGCCAGTC............................................................................	23	2	10.50	10.50
......................................................................................CTGTCATGGAATTGCTCCCTTTG..........................	23	2	10.50	10.50
......................................................................................CTGTCATGGAATTGCTCTCTTTC..........................	23	2	10.00	10.00
.......................................................................................TGTCATGGAATTGCTCTGTTTG..........................	22	2	8.50	8.50
.......................................................................................TGTCATGGAATTGCTCTTTTTG..........................	22	2	8.50	8.50
....................................AAGAGAGCTATCCGTCGTCAGT.............................................................................	22	2	8.00	8.00
....................................AAGAGAGCTATCCGTCGACAGTTT...........................................................................	24	1	15.00	15.00
....................................AAGAGAGCTATCCGTCGTCAGTC............................................................................	23	2	7.50	7.50
....................................AAGAGCGCTATCCGTCGACAGTC............................................................................	23	2	7.00	7.00
.......................................................................................TGTCATGGAATTGCTCTATTTGT.........................	23	2	7.00	7.00
......................................................................................CTGTCATGGAATTGCTCACTTTG..........................	23	2	7.00	7.00
....................................AATAGAGCTATCCGTCGACAGTC............................................................................	23	2	6.50	6.50
......................................................................................CTGTCATGGAATTGCTCTCTTTA..........................	23	2	6.50	6.50
.......................................................................................TGCCATGGAATTGCTCTCTTTG..........................	22	2	6.50	6.50
....................................AAGAGAGCTATCCGTCGGCAGTC............................................................................	23	2	6.00	6.00
........................................................................................GTCATGGAATTGCTCTCTTTG..........................	21	2	5.50	5.50
.......................................................................................TGTCATGGCATTGCTCTCTTTG..........................	22	2	5.50	5.50
....................................AAGAGCGCTATCCGTCGACAGT.............................................................................	22	2	5.50	5.50
.......................................................................................TGTCATGGAATTGCTCTCTTTGTA........................	24	2	5.50	5.50
.......................................................................................TGTCATGGAATTGCCCTCTTTG..........................	22	2	5.00	5.00
.......................................................................................TGTCAAGGAATTGCTCTCTTTG..........................	22	2	5.00	5.00
....................................AAGAGAACTATCCGTCGACAGTC............................................................................	23	2	4.50	4.50
....................................AAGAGAGCTATCCGTCGGCAGT.............................................................................	22	2	4.50	4.50
......................................................................................CTGTCATGGAATTGCTCTCCTTG..........................	23	2	4.50	4.50
....................................AAGAGAGCTATCCGTCGCCAGTCT...........................................................................	24	1	9.00	9.00
.......................................................................................TGTCATGGCATTGCTCTCTTTGT.........................	23	2	4.50	4.50
.......................................................................................TGTCATGGTATTGCTCTCTTTG..........................	22	2	4.50	4.50
.....................................AGAGAGCTGTCCGTCGACAGTC............................................................................	22	2	4.50	4.50
....................................AAGAGACCTATCCGTCGACAGTC............................................................................	23	2	4.50	4.50
.......................................................................................TGTCATGGAATTGCTCTTTTTGT.........................	23	2	4.50	4.50
.......................................................................................TGTCATGGAATTGCTCTGTTTGT.........................	23	2	4.00	4.00
....................................AAGAGACCTATCCGTCGACAGT.............................................................................	22	2	4.00	4.00
....................................AAGAGAGCCATCCGTCGACAGT.............................................................................	22	2	4.00	4.00
.......................................................................................TGTCATAGAATTGCTCTCTTTG..........................	22	2	4.00	4.00
.......................................................................................TGACATGGAATTGCTCTCTTTG..........................	22	2	4.00	4.00
....................................AAGAGGGCTATCCGTCGACAGTC............................................................................	23	2	4.00	4.00
....................................AAGAGAGCTATCCGCCGACAGTC............................................................................	23	2	4.00	4.00
....................................AAGAGAGCCATCCGTCGACAGTC............................................................................	23	2	4.00	4.00
......................................................................................CTGTCATGTAATTGCTCTCTTTG..........................	23	2	4.00	4.00
......................................................................................CTGTCATGGAATTGCTCGCTTTG..........................	23	2	4.00	4.00
.......................................................................................TGTCATCGAATTGCTCTCTTTG..........................	22	2	4.00	4.00
.......................................................................................TGTCATGGAATTGCTCTATTT...........................	21	2	4.00	4.00
.......................................................................................TGTCATGGAATTGCTCTCT.............................	19	2	3.50	3.50
.......................................................................................TGTCATGGAACTGCTCTCTTTG..........................	22	2	3.50	3.50
....................................AACAGAGCTATCCGTCGACAGTC............................................................................	23	2	3.50	3.50
......................................................................................CTGTCCTGGAATTGCTCTCTTTG..........................	23	2	3.50	3.50
.......................................................................................TGCCATGGAATTGCTCTCTTT...........................	21	2	3.50	3.50
.......................................................................................TGTCATGGAATTGCTCTCTTTGG.........................	23	2	3.50	3.50
....................................AAGAGAGCTATCCGTCGACAGA.............................................................................	22	2	3.50	3.50
......................................................................................CTGTCACGGAATTGCTCTCTTTG..........................	23	2	3.50	3.50
......................................................................................CTGTCATGGAATTGCTCACTTT...........................	22	2	3.50	3.50
.......................................................................................TGTCATGGAATTGCTCTCTTTTT.........................	23	2	3.00	3.00
....................................AAGAGAGCTATCCGTCCACAGTC............................................................................	23	2	3.00	3.00
....................................AAGAGAGCTATCCGTCGACAGTCTT..........................................................................	25	1	6.00	6.00
....................................AAGAGAACTATCCGTCGACAGT.............................................................................	22	2	3.00	3.00
.......................................................................................TGTCATGGCATTGCTCTCTTT...........................	21	2	3.00	3.00
......................................................................................CTGTCAAGGAATTGCTCTCTTTG..........................	23	2	3.00	3.00
.......................................................................................TGACATGGAATTGCTCTCTTT...........................	21	2	3.00	3.00
....................................AAGAGAGCAATCCGTCGACAGTC............................................................................	23	2	3.00	3.00
....................................AAGAGAGCCATCCGTCGACAGTT............................................................................	23	1	6.00	6.00
....................................AAGAGATCTATCCGTCGACAGTC............................................................................	23	2	3.00	3.00
......................................................................................CTGTCATGGAATTGCTCCCTTT...........................	22	2	2.50	2.50
.......................................................................................TGTCATGGAATTGCTCTTTTT...........................	21	2	2.50	2.50
.......................................................................................TGTCATGGACTTGCTCTCTTTG..........................	22	2	2.50	2.50
.......................................................................................TTTCATGGAATTGCTCTCTTTG..........................	22	2	2.50	2.50
.......................................................................................TGGCATGGAATTGCTCTCTTTG..........................	22	2	2.50	2.50
....................................AAGAGAACTATCCGTCGACAGTCT...........................................................................	24	1	5.00	5.00
......................................................................................CTGTCATGGAATTGCTCGCTTT...........................	22	2	2.50	2.50
....................................AAGAGAGCTGTCCGTCGACAGTC............................................................................	23	2	2.50	2.50
.......................................................................................TGTCATCGAATTGCTCTCTTTGT.........................	23	2	2.50	2.50
......................................................................................CTGTCATGAAATTGCTCTCTTTG..........................	23	2	2.50	2.50
.......................................................................................TGTCCTGGAATTGCTCTCTTTG..........................	22	2	2.50	2.50
...................................GAAGAGAGCTGTCCGTCGACAGT.............................................................................	23	2	2.50	2.50

12-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droAna3	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image

20-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droEug1	droBia1	droTak1	droEle1	droRho1	droFic1	droKik1	droAna3	droBip1	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image