dme-mir-280- 12- and 20-way alignments

dme-mir-280	chr2R:4185611-4185705 +	Known_mirbase
[View on miRBase]	[View on UCSC Genome Browser {Cornell Mirror}]	intergenic

Legend:

   mature strand at position 4185665-4185687
   star strand at position 4185620-4185646
   mutations
   read mismatches
   coordinate mismatch (possible incorrect ortholog)

12-way Fast Statistical Aligner re-alignment (From MAFs)

Species	Coordinate	Alignment
dm3	chr2R:4185596-4185720 +	CTGACGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTATGCTGGCTTTTATGTATTTACGTTGCATATGAAATGATATTTATAGTAAACAGATTATTTTATATGCAGGTATA--TGCAAGTCGAG---------------------------------GTCCTCCA-----------CACT-------GCACTCGC-CGC-CTCGA
droSim1	Unknown	----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec1	super_1:1832273-1832397 +	CTGACGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTGTGCTGGCTTTTATGTATTTACGTTGCATATGAAATGATATTTATAGTAAACAGATTATTTTATATGCAGGTATA--TGCAAGTCGAG---------------------------------GTCCTGCA-----------CACT-------GCACTCGC-CGC-CTCGA
droYak2	chr2L:16840791-16840915 +	CTGACGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTGTGCTGGCTTTTATGTATTTACGTTGCATATGAAATGATATTTATAGTAAACAGATTATTTTATATGCAGGTATA--TGCAACTTGAG---------------------------------GTCCTGCA-----------CACT-------GCACTCTC-CCG-CTCGA
droEre2	scaffold_4929:18446687-18446817 -	CTGACGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTGTGCTGGCTTTTATGTATTTACGTTGCATATGAAATGATATTTATAGTAAACAGATTATTTTATATGCAGGTATA--TGCAAGTCGAG---------------------------------GTCCAGCA-----------CACTGCACACTGCACTTGC-C-C-CTCGA
droAna3	scaffold_13266:1806990-1807233 -	TTGAAAT-------------------G-----TGT--GTA---TGTGG--------GTG---------------------------GGTGGGTGTGTGTGCACTTTCTgccatccagactgccagccagccatctagccagcctgccTGACTGCTTTCCTTGCCACTTGTGTGTATGTGTGTGTG-----------------TGTATGAGCTGGCTTTTATGTATTTACGTTGCATATGAAATGATATTTATAGTAAACAGATTATTTTATATGCAGGTATA--TGCAAG----------------------------------------CCTGAACAACTTTGGAACACT-------GCAATCGC-CTT-CTGGA
dp4	chr3:2170016-2170201 +	TTGATGC-------------------C-----tgt--gtg---tgtgtgtgtg------tgtgtgtCCAGTCGGTGTCA-------TGAG---GCGTATGC--------------------------------------------------------------------C----GTGTGTGTGTG-----------------TGTGTGAGACGGCTTTTATGTATTTACGTTGCATATGAAATGATATTTATAGTAAACAGATTATTTTATATGCAGGTATG--TGCAGCTGAAG---------------------------------AGCCTGTC-----------CATT-------GCACAATC-C-C-CACCC
droPer1	super_2:2339680-2339867 +	TTGATGC-------------------C-----TGT--GTG---TGTGT--GTG------TGTGCGTCCAGTCGGTGTCA-------TGAG---GCGTATGC--------------------------------------------------------------------Cgtgtgtgtgtgtgtg-----------------tgtgtgAGACGGCTTTTATGTATTTACGTTGCATATGAAATGATATTTATAGTAAACAGATTATTTTATATGCAGGTATG--TGCAGCTGAAG---------------------------------AGCCTGTC-----------CATT-------GCACAATC-C-C-CTCCC
droWil1	scaffold_180701:589914-590141 +	TTGATGCCCCAACACACACCCACCTCC-----TAT--CTA---TCTATCTATC------TCTGTCTC-----------ACCATAACTGAg---------------------------------------------------------------------------------tgtgtgtgtgtgtg-----------------tgtgtatgtTGGCTTTTATGTATTTACGTTGCATATGAAATGATATTTATAGTAAACAGATTATTTTATATGCAGGTATG--TGCAACCGAAGCAGCAGAAGCCAGGCC--CAAGTAGAAGCAAAAGGCCTGAA-----------CATT-------GCACTTGGGC-CATACGC
droVir3	scaffold_12875:9206154-9206327 +	TTGATGT-------------------CGTCTTTGTGT--GCCATGTGTGTGTG------TGTGTGTCCAT----------------------------------------------------------------------------------------------------------------------------------TTTGTGTGTGTTGGCTTTTATGTATTTACGTTGCATATGAAATGATATTTATAGTAAACAGATTATTTTATATGCAGGTATACATGCCAG------------------A----GCAGTGCATGCAAC--TGC-CCA-----------CAAT-------GCACATTT-C-TATCCGC
droMoj3	scaffold_6496:17934933-17935113 -	TTGATGT-------------------CGTCGTTGTGT--ACCAT--------GCATTCG---------------------------TGTG---------------------------------------------------------------------------------TGCCTGTGTGTGTG-----------------CGTGTGTGTTAGCTTTTATGTATTTACGTTGCATATGAAATGATATTTATAGTAAACAGATTATTTTATATGCAGGTATACATGCCAG------------------GCCGGCCAGTGCATGCAAC--TTC-TCT-----------CAAT-------GCATATTC-C-AATCCAC
droGri2	scaffold_15245:2520625-2520797 +	TTGATGT-------------------TGTCGTTGAGTCT---At--------gtctgtg---------------------------tgtg---------------------------------------------------------------------------------tgtgtgtgtgtgtgtgtgcgagtgtCCAGTTCGTGTGTGTTGGCTTTTATGTATTTACGTTGCATATGAAATGATATTTATAGTAAACAGATTATTTTATATGCAGGTATACATGCAAC---------------------------------------TCCTTCT-----------CAAT-------GGATCCCC--------AC

20-way Fast Statistical Aligner re-alignment (Top LASTZ hits)

Species	Coordinate	Lastz Id	Alignment
dm3	chr2R:4185596-4185720 +	NA	CTGACGTGTGTAT--------------------------------------------------------------------------------------------------------------------------------G---CTGGCTTTTA-TGTATTTACGTTGCAT-ATGAAA-----TGATATTTATAGTAAACAGATT--ATTTT-----------ATATGCAGGTATATGCAAGTCGAGGTCC-------TC--C------ACACTGCACTCGCCGC-CTCGA
droSim1	chrX:11649338-11649479 +	7	CGTAGGATGG----GATGGAG----------------------------------------------------------------------------------------------------------------GGGGGTTTG---TCAACTCGAA-CGTGCCTCGCATGCCA-ATGGAA-----TGCTTATCAAAGTATATAAAATTCATAGAAATTATGACGCGAGCGCAGAAAGTTGCAAGAAAAAGACG-------TT----------------TGACGTTGA-CACAA
droSec1	super_1:1832273-1832397 +	1	CTGACGTGTGTGT--------------------------------------------------------------------------------------------------------------------------------G---CTGGCTTTTA-TGTATTTACGTTGCAT-ATGAAA-----TGATATTTATAGTAAACAGATT--ATTTT-----------ATATGCAGGTATATGCAAGTCGAGGTCC-------TG--C------ACACTGCACTCGCCGC-CTCGA
droYak2	chr2L:16840791-16840915 +	1	CTGACGTGTGTGT--------------------------------------------------------------------------------------------------------------------------------G---CTGGCTTTTA-TGTATTTACGTTGCAT-ATGAAA-----TGATATTTATAGTAAACAGATT--ATTTT-----------ATATGCAGGTATATGCAACTTGAGGTCC-------TG--C------ACACTGCACTCTCCCG-CTCGA
droEre2	scaffold_4929:18446687-18446817 -	2	CTGACGTGTGTGT--------------------------------------------------------------------------------------------------------------------------------G---CTGGCTTTTA-TGTATTTACGTTGCAT-ATGAAA-----TGATATTTATAGTAAACAGATT--ATTTT-----------ATATGCAGGTATATGCAAGTCGAGGTCCAGCACACTG--C------ACACTGCACTTGCC-C-CTCGA
droEug1	scf7180000409275:13517-13673 -	2	TTGATATGTGTGTGCCTGTGT---TTGTGTAGA---------------------------------------------------------------------------------------------TATGTGTGTGTGTGAA---CTGGCTTTTA-TGTATTTACGTTGCAT-ATGAAA-----TGATATTTATAGTAAACAGATT--ATTTT-----------ATATGCAGGTATATGCAAGTCGAGGTCC-------TC--C------GCACTGCAATCGCCTC-CTCAA
droBia1	scf7180000302291:2050742-2050880 +	3	TTGATGTGAG----TT--------------------------------------------------------------------------------------------------------------CGAGCTCGTGTGCGAG---CTGGCTTTTA-TGTATTTACGTTGCAT-ATGAAA-----TGATATTTATAGTAAACAGATT--ATTTT-----------ATATGCAGGTATATGCAAGTCGAGGTCC-------TG--C------TCGCTGCATCCGACCC-CTGGA
droTak1	scf7180000415627:54525-54663 +	1	TTGATGTGTG----TT--------------------------------------------------------------------------------------------------------------TGAGCTCTTGTGTGAG---CTGGCTTTTA-TGTATTTACGTTGCAT-ATGAAA-----TGATATTTATAGTAAACAGATT--ATTTT-----------ATATGCAGGTATATGCAAGTCGAGGTCC-------TG--C------ACACTGCAATCGTCCC-CTGGA
droEle1	scf7180000491240:998892-999030 +	3	TTGATGTGTG----TT--------------------------------------------------------------------------------------------------------------TGTGCTCGTGTGTGAG---CTGGCTTTTA-TGTATTTACGTTGCAT-ATGAAA-----TGATATTTATAGTAAACAGATT--ATTTT-----------ATATGCAGGTATATGCAAGTCGAGGTCC-------TG--C------ATACTGCAATATCCCC-CTGGA
droRho1	scf7180000770177:298029-298165 +	1	TTGATGTGTG----TT--------------------------------------------------------------------------------------------------------------TGTGCCAGTGTGTGAG---CTGGCTTTTA-TGTATTTACGTTGCAT-ATGAAA-----TGATATTTATAGTAAACAGATT--ATTTT-----------ATATGCAGGTATATGCAA-TCGAGGTCC-------TG--T------ACACTGCAGCCGTC-C-CTGGA
droFic1	scf7180000453215:11307-11444 -	3	TTGACGTGTG----TT--------------------------------------------------------------------------------------------------------------TGTGGCCGTGTGTGAG---CTGGCTTTTA-TGTATTTACGTTGCAT-ATGAAA-----TGATATTTATAGTAAACAGATT--ATTTT-----------ATATGCAGGTACATGCAGGCCGAGCTTT-------TG--C------TTGCTGCAACCGCC-C-CTCGA
droKik1	scf7180000302277:32197-32350 +	1	TTGATGTGTGTGC----GTGTGA---------GTGTGCTGGT---------------------------------------------------------------------------GTTTGTGTTTGTGCTCGTGTGTGAGCTGCTGGCTTTTA-TGTATTTACGTTGCAT-ATGAAA-----TGATATTTATAGTAAACAGATT--ATTTT-----------ATATGCAGGTACATGCA-----------------------------GCACTGCAATCGGCTC-CTTGA
droAna3	scaffold_13266:1806990-1807233 -	1	TTGAAATGTGTGT----ATGTGG---------GTGGGTGGGTGTGTGTGCACTTTCTGCCATCCAGACTGCCAGCCAGCCATCTAGCCAGCCTGCCTGACTGCTTTCCTTGCCACTTGTGTGTATGTGTGTGTGTGTATGAG---CTGGCTTTTA-TGTATTTACGTTGCAT-ATGAAA-----TGATATTTATAGTAAACAGATT--ATTTT-----------ATATGCAGGTATATGCAAGCCTGA-ACAACTTT--GG--A------ACACTGCAATCGCCTT-CTGGA
droBip1	scf7180000396006:13808-13931 +	1	TTAAAGTTTAGGT--------------------------------------------------------------------------------------------------------------------------------T--TTCGATTTAAA-TGTGTTTCAATTATAT-TTTAGA-----C---TTTAATAAATCATATATT--ATTTT-----------ATGAG---CTATATAAAAAATAAA-TGTCCCAC--AG--T------GCCTTGCAGCTGAGTT-GCCGT
dp4	chr2:30061606-30061728 +	3	CTGCCGTTTG----CATGCATTAAATATTAATCTGTGCTGCC---------------------------------------------------------------------------G--------------------------------------------------------TGCAA-----TTTCTGCTCTCGGAAATTAGTT--ACAGA-----------AATTATAATTAAATTCCATTTTTGGTAG-------GA--T------GCACCTCCCCCTCCCC-CCTGC
droPer1	super_2:4543214-4543334 +	2	GTG-TATGTGTGTGCT-G-----TATGCTCCTGTGTGTAAGT---------------------------------------------------------------------------GTGTGTATAAGCGCCCATATGTATGCAAGCGA------------TTTTCATTTTT-GTT--------------------------------------------------------------------TAAAGCCCCCCAGAGTG--C------ATTTCGCACTCGGTCGCTGGGT
droWil1	scaffold_181096:11432349-11432477 +	26	GGTGTGTGTG----TCTGTGT---ATGTGTATGTGTACGTGT---------------------------------------------------------------------------GCGTGTATC----ATACTATGAATGGGAAGAA------------T--GAATGGTT-GAA------------------------------------------------TAAAGCAGGCAGGCGCAGGCCGAGGACG--------A--CGA----ACCATTCATTATCTGC-CATTG
droVir3	scaffold_12963:14846605-14846723 -	71	GTG-TGTGTG----TTGGCAT--TTTATGTATGTGTGCGCGC---------------------------------------------------------------------------GTGTGTTT--ACTT---------------TATAT-ACATTGTTCTGGT----------------------------------------------------------------TTTCCATGCCCAAGTCGCAGCCC-------CTCGCAAATT-TAACTCAAGTTAGCAT-TTTGT
droMoj3	scaffold_6396:7752-7870 -	37	ACA-TGTATA----TC--------------------------------------------------------------------------------------------------------------CATGT---------------TATAA-TCATAATATTAAAGTTTCATGACGAAA-----GTACATCCACAAGAAA--AGTT--ATTGA-----------ACAATTAGGTTCCTATAG-------TAA-------GC--C-----ACCACTGCAGCCAAT-G-CGTGT
droGri2	scaffold_14853:951273-951401 +	6	GTG-CGTGCGTGA--------------------------------------------------------------------------------------------------------------------------------G---TTCG--TTCG-TGCGTCTTTGTCGCAC-TTGATTGCTGTTTTTATTTTTTGTTAAAATTTT--TTTTT-----------TTTGGTGCGTGTGTGCAAGTGGAAAGTT-------CAAGC------GTACAGAGCGCGAGAG-AGTGA

[View All Possible Orthologs]

Original 12-way multiz alignment with reads super-imposed

Species

Alignment

dm3

CTGACGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTATGCTGGCTTTTATGTATTTACGTTGCATATGAAATGATATTTATAGTAAACAGATTATTTTATATGCAGGTATA--TGCAAGTCGAG---------------------------------GTCCTCCA-----------CACT-------GCACTCGC-CGC-CTCGA

Size

Hit Count

Total Norm

droSim1

----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

V044
Embryo

M023
Head

M024
Male body

M025
Embryo

droSec1

CTGACGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTGTGCTGGCTTTTATGTATTTACGTTGCATATGAAATGATATTTATAGTAAACAGATTATTTTATATGCAGGTATA--TGCAAGTCGAG---------------------------------GTCCTGCA-----------CACT-------GCACTCGC-CGC-CTCGA

Size

Hit Count

Total Norm

V113
Male body

V114
Embryo

V115
Head

droYak2

CTGACGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTGTGCTGGCTTTTATGTATTTACGTTGCATATGAAATGATATTTATAGTAAACAGATTATTTTATATGCAGGTATA--TGCAACTTGAG---------------------------------GTCCTGCA-----------CACT-------GCACTCTC-CCG-CTCGA	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
......................................................................................................................................................................................................................CTTAAATGTATTTACGTT................................................................................................................................................	18	1	1.00	0.00	1.00	0.00	0.00	0.00

droEre2

CTGACGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTGTGCTGGCTTTTATGTATTTACGTTGCATATGAAATGATATTTATAGTAAACAGATTATTTTATATGCAGGTATA--TGCAAGTCGAG---------------------------------GTCCAGCA-----------CACTGCACACTGCACTTGC-C-C-CTCGA	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
.............................................................................................................................................................................................................GTGTGCTGGATGTTATGT.........................................................................................................................................................	18	1	2.00	0.00	0.00	1.00	1.00
.....GT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGxATGCTGGCTTTTG............................................................................................................................................................	18	1	1.00	0.00	0.00	0.00	1.00
.............................................................................................................................................................................................................GTGTTCTGGCTTTTTTGT.........................................................................................................................................................	18	1	1.00	0.00	0.00	1.00	0.00
............................................................................................................................................................................................................TGTGTGCTGGCTTTTTTTT.........................................................................................................................................................	19	1	1.00	0.00	0.00	1.00	0.00
.............................................................................................................................................................................................................................................................TTATACAGATTATTTTAT.........................................................................................................	18	1	1.00	1.00	0.00	0.00	0.00
.............................................................................................................................................................................................................GTGTGCTGGATCTTATGT.........................................................................................................................................................	18	1	1.00	0.00	0.00	1.00	0.00
.............................................................................................................................................................................................................GTGTGCTGGCTGTTTTGT.........................................................................................................................................................	18	1	1.00	0.00	0.00	1.00	0.00
.TGCCGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GxGTGTGCTGGCTTT..............................................................................................................................................................	20	1	1.00	1.00	0.00	0.00	0.00
...............................................................................................................................................................................................................................................................................ATGTAGGTAxA--TGCAAGTC....................................................................................	18	1	1.00	0.00	0.00	1.00	0.00

droAna3

TTGAAAT-------------------G-----TGT--GTA---TGTGG--------GTG---------------------------GGTGGGTGTGTGTGCACTTTCTgccatccagactgccagccagccatctagccagcctgccTGACTGCTTTCCTTGCCACTTGTGTGTATGTGTGTGTG-----------------TGTATGAGCTGGCTTTTATGTATTTACGTTGCATATGAAATGATATTTATAGTAAACAGATTATTTTATATGCAGGTATA--TGCAAG----------------------------------------CCTGAACAACTTTGGAACACT-------GCAATCGC-CTT-CTGGA	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
............................................GTGG--------GTG---------------------------GATGGGTGGGT.......................................................................................................................................................................................................................................................................................	18	3	219.33	4.67	213.00	1.67	0.00
............................................GTGG--------GTG---------------------------GGTGGATGGGT.......................................................................................................................................................................................................................................................................................	18	4	40.50	1.00	39.50	0.00	0.00
............................................GTGG--------GTG---------------------------GGTGGGTGGTT.......................................................................................................................................................................................................................................................................................	18	4	34.00	2.00	32.00	0.00	0.00
........................................................GTG---------------------------GGTGGGTGGGTGTCC...................................................................................................................................................................................................................................................................................	18	3	23.00	0.33	22.67	0.00	0.00
............................................GTGG--------GTG---------------------------GGTGGGTGTCC.......................................................................................................................................................................................................................................................................................	18	3	23.00	0.33	22.67	0.00	0.00
............................................GTGG--------GTG---------------------------GATGGGTGGGTGT.....................................................................................................................................................................................................................................................................................	20	2	28.00	2.50	25.00	0.50	0.00
............................................GTGG--------GTG---------------------------GGTGGGTGGCT.......................................................................................................................................................................................................................................................................................	18	4	11.25	0.00	11.25	0.00	0.00
............................................GTGG--------GTC---------------------------GGTGGGTGGGT.......................................................................................................................................................................................................................................................................................	18	3	15.00	0.33	14.67	0.00	0.00
........................................................GTG---------------------------GGTGGGTGTGTGGCC...................................................................................................................................................................................................................................................................................	18	2	19.50	0.00	19.50	0.00	0.00
............................................GTGG--------GTG---------------------------GGTCGGTGGGT.......................................................................................................................................................................................................................................................................................	18	3	9.00	0.00	9.00	0.00	0.00
............................................GTGG--------GTG---------------------------GATGGGTGGGTG......................................................................................................................................................................................................................................................................................	19	3	8.67	0.33	8.33	0.00	0.00
........................................................GTG---------------------------GGTGGGTGxGTGGGCA..................................................................................................................................................................................................................................................................................	18	1	25.00	0.00	25.00	0.00	0.00
.....................................GTG---TGTGG--------TTG---------------------------GGTGGGT...........................................................................................................................................................................................................................................................................................	18	2	10.00	0.00	10.00	0.00	0.00
.............................................TGG--------GTG---------------------------GGTGGGTGGTTG......................................................................................................................................................................................................................................................................................	18	5	3.80	0.00	3.80	0.00	0.00
............................................GTGG--------GTG---------------------------GGTGGATGGGTG......................................................................................................................................................................................................................................................................................	19	3	5.00	0.00	4.67	0.33	0.00
............................................GTGG--------GTG---------------------------GGTxGGTGGGTG......................................................................................................................................................................................................................................................................................	18	8	1.88	0.00	1.88	0.00	0.00
............................................GTGG--------GTG---------------------------GGTGGCTGGGT.......................................................................................................................................................................................................................................................................................	18	4	3.25	0.00	3.25	0.00	0.00
...........................................TGxGG--------GTG---------------------------GGTGGGTGTGTGG.....................................................................................................................................................................................................................................................................................	20	2	6.50	0.00	6.00	0.50	0.00
.............................................TGG--------GTG---------------------------GATGGGTGGGTG......................................................................................................................................................................................................................................................................................	18	3	4.00	0.00	4.00	0.00	0.00
.............................................TGG--------GTG---------------------------GGTGGGTGTTGGT.....................................................................................................................................................................................................................................................................................	19	1	11.00	0.00	11.00	0.00	0.00
............................................GTGG--------GTG---------------------------GTTGGGTGTGT.......................................................................................................................................................................................................................................................................................	18	3	3.67	0.33	3.33	0.00	0.00
.........................................................................................................................................................................AGTGTGTGTGTGTGTG-----------------TG............................................................................................................................................................................	18	16	0.69	0.06	0.63	0.00	0.00
.......................................................................................................................................................................AGTGTGTGTGTGTGTGTG-----------------..............................................................................................................................................................................	18	16	0.69	0.06	0.63	0.00	0.00
........................................................................................................................................................................GTGTGTGTGTGTGTGTG-----------------T.............................................................................................................................................................................	18	13	0.77	0.00	0.77	0.00	0.00
..........................................................................................................................................................................GTGTGTGTGTGTGTG-----------------TGT...........................................................................................................................................................................	18	13	0.77	0.00	0.77	0.00	0.00
............................................GTGG--------GTG---------------------------GGTGGGTTGGT.......................................................................................................................................................................................................................................................................................	18	3	3.00	0.33	2.67	0.00	0.00
.......................................................................................................................................................................AGTGTGTGTGTGTGTGTG-----------------T.............................................................................................................................................................................	19	14	0.57	0.00	0.57	0.00	0.00
............................................GTGG--------GTG---------------------------GGTGGTTGxGTGTGCA..................................................................................................................................................................................................................................................................................	22	1	8.00	0.00	8.00	0.00	0.00
.........................................................................................................................................................................AGTGTGTGTGTGTGTG-----------------TGT...........................................................................................................................................................................	19	14	0.57	0.00	0.57	0.00	0.00
.....................................GTG---TGTGG--------ATG---------------------------GGTGGGT...........................................................................................................................................................................................................................................................................................	18	2	3.50	0.50	3.00	0.00	0.00
............................................GTGG--------ATG---------------------------GGTGGGTGGGT.......................................................................................................................................................................................................................................................................................	18	5	1.40	0.00	1.40	0.00	0.00
.........................................................................................................................................................................TGTGTGTGTGTGTGTG-----------------TG............................................................................................................................................................................	18	13	0.54	0.00	0.54	0.00	0.00
.......................................................................................................................................................................TGTGTGTGTGTGTGTGTG-----------------..............................................................................................................................................................................	18	13	0.54	0.00	0.54	0.00	0.00
............................................GTGG--------GTG---------------------------GATGGGTGGG........................................................................................................................................................................................................................................................................................	17	3	2.00	0.00	0.00	2.00	0.00
.......................................................................................................................................................................TGTGTGTGTGTGTGTGTG-----------------T.............................................................................................................................................................................	19	11	0.55	0.00	0.55	0.00	0.00
............................................GTGG--------GTG---------------------------GGTGGCTGTGG.......................................................................................................................................................................................................................................................................................	18	1	6.00	0.00	6.00	0.00	0.00
............................................GTGG--------GTG---------------------------AGTGGGTGGGTG......................................................................................................................................................................................................................................................................................	19	3	2.00	0.00	2.00	0.00	0.00
.........................................................................................................................................................................TGTGTGTGTGTGTGTG-----------------TGT...........................................................................................................................................................................	19	11	0.55	0.00	0.55	0.00	0.00
............................................GTGG--------TTG---------------------------GGTGGGTGGGT.......................................................................................................................................................................................................................................................................................	18	5	1.20	0.00	1.20	0.00	0.00
............................................GTGG--------GTG---------------------------GGTGGGTGTCG.......................................................................................................................................................................................................................................................................................	18	1	6.00	0.00	6.00	0.00	0.00
.............................................TGG--------GTG---------------------------GGTGGGTGTTGG......................................................................................................................................................................................................................................................................................	18	1	5.00	0.00	5.00	0.00	0.00
............................................GAGG--------GTG---------------------------GGTxGGTGTGTGTG....................................................................................................................................................................................................................................................................................	20	2	2.50	1.50	1.00	0.00	0.00
.......................................................................................................................................................................TGTGTGTGTGTGTGTGTG-----------------TG............................................................................................................................................................................	20	9	0.56	0.00	0.56	0.00	0.00
............................................GTGG--------GTG---------------------------AGTGGGTGGGT.......................................................................................................................................................................................................................................................................................	18	3	1.67	0.00	1.67	0.00	0.00
.................................GT--GGA---TGTGG--------ATG---------------------------GGTGGGT...........................................................................................................................................................................................................................................................................................	20	1	5.00	0.00	4.00	1.00	0.00
..................................T--GTG---TGTGG--------GTG---------------------------GGTGGGC...........................................................................................................................................................................................................................................................................................	19	1	5.00	0.00	5.00	0.00	0.00
............................................GTGG--------GTG---------------------------GGTGGTGGTGTG......................................................................................................................................................................................................................................................................................	19	2	2.50	0.00	2.50	0.00	0.00
.............................................TGG--------GTC---------------------------GGTGGGTGGGTG......................................................................................................................................................................................................................................................................................	18	3	1.67	0.00	1.67	0.00	0.00
.........................................................................................................................................................................TGTGTGTGTGTGTGTG-----------------TGCA..........................................................................................................................................................................	20	7	0.57	0.00	0.57	0.00	0.00
...........................................TGTGG--------GTG---------------------------GGTGGGTGTCC.......................................................................................................................................................................................................................................................................................	19	1	4.00	0.00	4.00	0.00	0.00
........................................................GTG---------------------------GGTGGGTGTGTGGGT...................................................................................................................................................................................................................................................................................	18	5	0.80	0.00	0.80	0.00	0.00
........................................................GTG---------------------------GGTGGGTGTGTGTCC...................................................................................................................................................................................................................................................................................	18	1	4.00	0.00	4.00	0.00	0.00
.............................................GGG--------GTG---------------------------GGTGGGTGTGTGG.....................................................................................................................................................................................................................................................................................	19	3	1.33	0.00	1.33	0.00	0.00
............................................GTGG--------GTG---------------------------GGTGTGTGGGT.......................................................................................................................................................................................................................................................................................	18	5	0.80	0.00	0.80	0.00	0.00
.....................................GTT---GGTGG--------GTG---------------------------GGTGGGT...........................................................................................................................................................................................................................................................................................	18	4	1.00	0.00	1.00	0.00	0.00
............................................GTGG--------GTG---------------------------GCTGGGTGGGT.......................................................................................................................................................................................................................................................................................	18	3	1.33	0.00	1.00	0.33	0.00
............................................GTGG--------GTG---------------------------GTTGGGTGAGT.......................................................................................................................................................................................................................................................................................	18	2	2.00	0.50	1.50	0.00	0.00
............................................GTTG--------GTG---------------------------GGTGGGTGGGT.......................................................................................................................................................................................................................................................................................	18	4	1.00	0.00	1.00	0.00	0.00
............................................GTGG--------GTG---------------------------TGTGGGTGTGGGT.....................................................................................................................................................................................................................................................................................	20	2	1.50	0.00	1.50	0.00	0.00
................................TGT--GTG---TGTGT--------GTG---------------------------GGTG..............................................................................................................................................................................................................................................................................................	18	18	0.17	0.00	0.17	0.00	0.00
...............................................................................................................................................................................TGTGTGTGTG-----------------TGTGTGTGC.....................................................................................................................................................................	19	14	0.21	0.00	0.21	0.00	0.00
............................................ATGG--------GTG---------------------------GGTGGGTGTGA.......................................................................................................................................................................................................................................................................................	18	1	3.00	0.00	3.00	0.00	0.00
............................................GTGG--------GTC---------------------------GGTGGGTGGGTG......................................................................................................................................................................................................................................................................................	19	3	1.00	0.00	1.00	0.00	0.00
.........................................................................................................................................................................GGTGTGTGTGTGTGTG-----------------TGT...........................................................................................................................................................................	19	13	0.23	0.08	0.15	0.00	0.00
.....................................GTG---TGTGG--------GTG---------------------------GTTGGGT...........................................................................................................................................................................................................................................................................................	18	4	0.75	0.00	0.75	0.00	0.00
.......................................................................................................................................................................GGTGTGTGTGTGTGTGTG-----------------T.............................................................................................................................................................................	19	13	0.23	0.08	0.15	0.00	0.00
..........................................................................................................................................................................GTGTGTGTGTGTGTG-----------------TGC...........................................................................................................................................................................	18	17	0.18	0.00	0.18	0.00	0.00
........................................................GTG---------------------------TGTGTGTGTGTGTGC...................................................................................................................................................................................................................................................................................	18	17	0.18	0.00	0.18	0.00	0.00
............................................GTGG--------GTG---------------------------TGTGGGTGTGT.......................................................................................................................................................................................................................................................................................	18	8	0.38	0.13	0.25	0.00	0.00
........................................................................................................................................................................GTGTGTGTGTGTGTGTG-----------------C.............................................................................................................................................................................	18	17	0.18	0.00	0.18	0.00	0.00
.........................................................................................................................................................................TGTGTGTGTGTGTGTG-----------------TGC...........................................................................................................................................................................	19	14	0.21	0.00	0.21	0.00	0.00
............................................GTGG--------CTG---------------------------GGTGGGTGGGT.......................................................................................................................................................................................................................................................................................	18	5	0.60	0.00	0.60	0.00	0.00
.........................................................................................................................................................................TGTGTGTGTGTGTGGG-----------------TG............................................................................................................................................................................	18	18	0.17	0.00	0.17	0.00	0.00
.......................................................................................................................................................................TGTGTGTGTGTGTGGGTG-----------------..............................................................................................................................................................................	18	18	0.17	0.00	0.17	0.00	0.00
.......................................................................................................................................................................TGTGTGTGTGTGTGTGTG-----------------TGT...........................................................................................................................................................................	21	7	0.43	0.00	0.29	0.14	0.00
.............................................TTG--------GTG---------------------------GGTGGGTGGGTG......................................................................................................................................................................................................................................................................................	18	4	0.75	0.00	0.75	0.00	0.00
.............................................TGG--------GTG---------------------------GATGGGTGGGTGT.....................................................................................................................................................................................................................................................................................	19	2	1.50	0.00	1.50	0.00	0.00
.............................................TGG--------GTG---------------------------GATGGGTGGGT.......................................................................................................................................................................................................................................................................................	17	3	1.00	0.00	0.00	1.00	0.00
......................................TT---GGTGG--------GTG---------------------------GGTGGGTG..........................................................................................................................................................................................................................................................................................	18	4	0.75	0.00	0.75	0.00	0.00
.......................................................................................................................................................................TGTGTGTGTGTGTGTGTG-----------------C.............................................................................................................................................................................	19	14	0.21	0.00	0.21	0.00	0.00
...........................................TGTGG--------GTG---------------------------GGTGGGTGGC........................................................................................................................................................................................................................................................................................	18	1	3.00	0.00	3.00	0.00	0.00
................................................................................................................................................................................GTGTGTGTG-----------------TGTGTGTGC.....................................................................................................................................................................	18	17	0.18	0.00	0.18	0.00	0.00
............................................GTGG--------GTG---------------------------GGTGGGTGTATGG.....................................................................................................................................................................................................................................................................................	20	2	1.50	0.50	1.00	0.00	0.00
.............................................TGG--------TTG---------------------------GGTGGGTGGGTG......................................................................................................................................................................................................................................................................................	18	5	0.60	0.00	0.60	0.00	0.00
........................................................................................................................................................................GTGTGTGTGTGTGTGTG-----------------TGT...........................................................................................................................................................................	20	8	0.38	0.00	0.38	0.00	0.00

dp4

TTGATGC-------------------C-----tgt--gtg---tgtgtgtgtg------tgtgtgtCCAGTCGGTGTCA-------TGAG---GCGTATGC--------------------------------------------------------------------C----GTGTGTGTGTG-----------------TGTGTGAGACGGCTTTTATGTATTTACGTTGCATATGAAATGATATTTATAGTAAACAGATTATTTTATATGCAGGTATG--TGCAGCTGAAG---------------------------------AGCCTGTC-----------CATT-------GCACAATC-C-C-CACCC	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
................................TGT--GTG---TGTGTGTGTG------TGTGTGTG.....................................................................................................................................................................................................................................................................................................................	24	17	1.47	0.24	0.00	1.24	0.00
..........................G-----TGT--GTG---TGTGTGTGTG------TGTGTG.......................................................................................................................................................................................................................................................................................................................	23	20	0.30	0.00	0.00	0.30	0.00
.................................GT--GTG---TGTGTGTGTG------TGTGTGTG.....................................................................................................................................................................................................................................................................................................................	23	20	0.30	0.00	0.00	0.30	0.00
.......................................G---TACGTGTGTG------TGTGTGT......................................................................................................................................................................................................................................................................................................................	18	29	0.17	0.00	0.17	0.00	0.00
.....................................GTA---CGTGTGTGTG------TGTGT........................................................................................................................................................................................................................................................................................................................	18	29	0.17	0.00	0.17	0.00	0.00
.....................................GTA---CGTGTGTGTG------TGTGTG.......................................................................................................................................................................................................................................................................................................................	19	26	0.19	0.08	0.08	0.04	0.00
.................................GT--ACG---TGTGTGTGTG------TGT..........................................................................................................................................................................................................................................................................................................................	18	29	0.17	0.00	0.17	0.00	0.00
.................................GT--ACG---TGTGTGTGTG------TGTG.........................................................................................................................................................................................................................................................................................................................	19	26	0.19	0.08	0.08	0.04	0.00
................................TGT--GTG---TGTGTGTGTG------TGTGTGTT.....................................................................................................................................................................................................................................................................................................................	24	13	0.31	0.00	0.08	0.23	0.00
..................................T--GTG---TGTGTGTGTG------TGTGTGTG.....................................................................................................................................................................................................................................................................................................................	22	21	0.19	0.00	0.00	0.19	0.00
................................TGT--GTG---TGTGTGTGTG------TGTGTG.......................................................................................................................................................................................................................................................................................................................	22	21	0.19	0.00	0.00	0.19	0.00
...............................................................................................................................................................................TTTGTGTGTG-----------------TGTGTGTG......................................................................................................................................................................	18	37	0.08	0.03	0.03	0.03	0.00
................................TGT--GTG---TGTGTGTGTG------TGT..........................................................................................................................................................................................................................................................................................................................	19	27	0.11	0.04	0.00	0.07	0.00
..................................T--GTG---TGTGTGTGTG------TGTGT........................................................................................................................................................................................................................................................................................................................	19	27	0.11	0.04	0.00	0.07	0.00
...........................................TTTGTGTGTG------TGTGTGTG.....................................................................................................................................................................................................................................................................................................................	18	37	0.08	0.03	0.03	0.03	0.00
..................................T--GTC---TGTGTGTGTA------TGTGTG.......................................................................................................................................................................................................................................................................................................................	20	20	0.15	0.15	0.00	0.00	0.00
......................................TT---TGTGTGTGTG------TGTGTG.......................................................................................................................................................................................................................................................................................................................	18	37	0.08	0.03	0.03	0.03	0.00
................................TGT--CTG---TGTGTGTATG------TGTG.........................................................................................................................................................................................................................................................................................................................	20	20	0.15	0.15	0.00	0.00	0.00
................................TTT--GTG---TGTGTGTGTG------TG...........................................................................................................................................................................................................................................................................................................................	18	37	0.08	0.03	0.03	0.03	0.00
......................................TG---TGTGTGTGTG------TGTGTGT......................................................................................................................................................................................................................................................................................................................	19	27	0.11	0.04	0.00	0.07	0.00
..................................T--TTG---TGTGTGTGTG------TGTG.........................................................................................................................................................................................................................................................................................................................	18	37	0.08	0.03	0.03	0.03	0.00
....TGT-------------------C-----TGT--GTG---TGTATGTGTG------.............................................................................................................................................................................................................................................................................................................................	20	20	0.15	0.15	0.00	0.00	0.00
.........................................................................................................................................................................T----TTGTGTGTGTG-----------------TGTGTG........................................................................................................................................................................	18	37	0.08	0.03	0.03	0.03	0.00
......T-------------------T-----TGT--GTG---TGTGTGTGTG------.............................................................................................................................................................................................................................................................................................................................	18	37	0.08	0.03	0.03	0.03	0.00

droPer1

TTGATGC-------------------C-----TGT--GTG---TGTGT--GTG------TGTGCGTCCAGTCGGTGTCA-------TGAG---GCGTATGC--------------------------------------------------------------------Cgtgtgtgtgtgtgtg-----------------tgtgtgAGACGGCTTTTATGTATTTACGTTGCATATGAAATGATATTTATAGTAAACAGATTATTTTATATGCAGGTATG--TGCAGCTGAAG---------------------------------AGCCTGTC-----------CATT-------GCACAATC-C-C-CTCCC	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
..........................................................................................................................................................................GTGTGTGTGTGTGTG-----------------TGTGT.........................................................................................................................................................................	20	32	0.47	0.47	0.00	0.00	0.00	0.00
............................................................................................................................................................................GTGTGTGTGTGTG-----------------TGTGTGT.......................................................................................................................................................................	20	32	0.47	0.47	0.00	0.00	0.00	0.00
.................................GT--GTG---TGTGT--GTG------TGTGTGT......................................................................................................................................................................................................................................................................................................................	20	32	0.47	0.47	0.00	0.00	0.00	0.00
..........................G-----TGC--GTG---TGTGT--GTG------TGTGC........................................................................................................................................................................................................................................................................................................................	20	26	0.46	0.12	0.35	0.00	0.00	0.00
............................................................................................................................................................................GTGCGTGTGTGTG-----------------TGTGTGC.......................................................................................................................................................................	20	26	0.46	0.12	0.35	0.00	0.00	0.00
..........................................................................................................................................................................GTGCGTGTGTGTGTG-----------------TGTGC.........................................................................................................................................................................	20	26	0.46	0.12	0.35	0.00	0.00	0.00
............................................................................................................................................................................GTGTGTGTGTGTG-----------------TGTGTGTG......................................................................................................................................................................	21	29	0.31	0.31	0.00	0.00	0.00	0.00
..........................G-----TGT--GTG---TGTGT--GTG------TGT..........................................................................................................................................................................................................................................................................................................................	18	41	0.22	0.17	0.05	0.00	0.00	0.00
.................................GT--GTG---TGTGT--GTG------TGTGT........................................................................................................................................................................................................................................................................................................................	18	41	0.22	0.17	0.05	0.00	0.00	0.00
..........................................................................................................................................................................GTGTGTGTGTGTGTG-----------------TGT...........................................................................................................................................................................	18	41	0.22	0.17	0.05	0.00	0.00	0.00
..............................................................................................................................................................................GTGTGTGTGTG-----------------TGTGTGT.......................................................................................................................................................................	18	41	0.22	0.17	0.05	0.00	0.00	0.00
............................................................................................................................................................................GTGTGTGTGTGTG-----------------TGTGT.........................................................................................................................................................................	18	41	0.22	0.17	0.05	0.00	0.00	0.00
..........................................................................................................................................................................GTGTGTGTGTGTGTG-----------------TGTGTG........................................................................................................................................................................	21	29	0.31	0.31	0.00	0.00	0.00	0.00
.....................................GTG---TGTGT--GTG------TGTGTGT......................................................................................................................................................................................................................................................................................................................	18	41	0.22	0.17	0.05	0.00	0.00	0.00
..........................G-----TGC--GTG---TGTGT--GTG------TGTG.........................................................................................................................................................................................................................................................................................................................	19	42	0.19	0.10	0.10	0.00	0.00	0.00
.................................GT--GCG---TGTGT--GTG------TGTGTG.......................................................................................................................................................................................................................................................................................................................	19	42	0.19	0.10	0.10	0.00	0.00	0.00
............................................................................................................................................................................GTGCGTGTGTGTG-----------------TGTGT.........................................................................................................................................................................	18	26	0.31	0.04	0.27	0.00	0.00	0.00
...GTGC-------------------G-----TGT--GTG---TGTGT--GTG------.............................................................................................................................................................................................................................................................................................................................	19	42	0.19	0.10	0.10	0.00	0.00	0.00
............................................................................................................................................................................GTGCGTGTGTGTG-----------------TGTGTG........................................................................................................................................................................	19	42	0.19	0.10	0.10	0.00	0.00	0.00
..............................................................................................................................................................................GTGCGTGTGTG-----------------TGTGTGTG......................................................................................................................................................................	19	42	0.19	0.10	0.10	0.00	0.00	0.00
..........................................................................................................................................................................GTGCGTGTGTGTGTG-----------------TGT...........................................................................................................................................................................	18	26	0.31	0.04	0.27	0.00	0.00	0.00
..........................................................................................................................................................................GTGCGTGTGTGTGTG-----------------TGTG..........................................................................................................................................................................	19	42	0.19	0.10	0.10	0.00	0.00	0.00
.............................................................................................................................................................................TGTGTGTGTGTG-----------------TGTGTGTG......................................................................................................................................................................	20	32	0.22	0.19	0.00	0.03	0.00	0.00
................................TGT--GTG---TGTGT--GTG------TGTGTG.......................................................................................................................................................................................................................................................................................................................	20	32	0.22	0.19	0.00	0.03	0.00	0.00
.........................................................................................................................................................................TGTGTGTGTGTGTGTG-----------------TGTGT.........................................................................................................................................................................	21	29	0.24	0.17	0.07	0.00	0.00	0.00
...........................................................................................................................................................................TGTTTGTTTGTGTG-----------------TGTGTG........................................................................................................................................................................	20	23	0.30	0.17	0.04	0.00	0.09	0.00
...........................................................................................................................................................................TGTGTGTGTGTGTG-----------------TGTG..........................................................................................................................................................................	18	39	0.18	0.08	0.00	0.08	0.03	0.00
...............................................................................................................................................................................TGTGTGTGTG-----------------TGTGTGTG......................................................................................................................................................................	18	39	0.18	0.08	0.00	0.08	0.03	0.00
................................TGT--GTG---TGTGT--GTG------TGTG.........................................................................................................................................................................................................................................................................................................................	18	39	0.18	0.08	0.00	0.08	0.03	0.00
................................TGT--GTG---TGTGT--GTG------TGTGTGT......................................................................................................................................................................................................................................................................................................................	21	29	0.24	0.17	0.07	0.00	0.00	0.00
.........................................................................................................................................................................TGTGTGTGTGTGTGTG-----------------TGTG..........................................................................................................................................................................	20	32	0.22	0.19	0.00	0.03	0.00	0.00
...........................................................................................................................................................................TGTGTGTGTGTGTG-----------------TGTGTG........................................................................................................................................................................	20	32	0.22	0.19	0.00	0.03	0.00	0.00
.............................................................................................................................................................................TGTGTGTGTGTG-----------------TGTGTG........................................................................................................................................................................	18	39	0.18	0.08	0.00	0.08	0.03	0.00
.........................................................................................................................................................................TGTGTGTGTGTGTGTG-----------------TG............................................................................................................................................................................	18	39	0.18	0.08	0.00	0.08	0.03	0.00
..................................T--GTG---TGTGT--GTG------TGTGTG.......................................................................................................................................................................................................................................................................................................................	18	39	0.18	0.08	0.00	0.08	0.03	0.00
...........................................................................................................................................................................TGTGTGTGTGTGTG-----------------TGTGTGT.......................................................................................................................................................................	21	29	0.24	0.17	0.07	0.00	0.00	0.00
................................TGT--GTG---TGTGT--GTG------TGTGT........................................................................................................................................................................................................................................................................................................................	19	36	0.14	0.14	0.00	0.00	0.00	0.00
............................................................................................................................................................................GTGCGTGTGTGTG-----------------TGTGTGCG......................................................................................................................................................................	21	23	0.22	0.17	0.04	0.00	0.00	0.00
..................................T--GTG---TGTGT--GTG------TGTGTGT......................................................................................................................................................................................................................................................................................................................	19	36	0.14	0.14	0.00	0.00	0.00	0.00
.........................................................................................................................................................................TGTGTGTGTGTGTGTG-----------------TGT...........................................................................................................................................................................	19	36	0.14	0.14	0.00	0.00	0.00	0.00
...........................................................................................................................................................................TGTGTGTGTGTGTG-----------------TGTGT.........................................................................................................................................................................	19	36	0.14	0.14	0.00	0.00	0.00	0.00
..........................................................................................................................................................................GTGCGTGTGTGTGTG-----------------TGTGCG........................................................................................................................................................................	21	23	0.22	0.17	0.04	0.00	0.00	0.00
..........................G-----TGC--GTG---TGTGT--GTG------TGTGCG.......................................................................................................................................................................................................................................................................................................................	21	23	0.22	0.17	0.04	0.00	0.00	0.00
.............................................................................................................................................................................TGTGTGTGTGTG-----------------TGTGTGT.......................................................................................................................................................................	19	36	0.14	0.14	0.00	0.00	0.00	0.00
.........................................................................................................................................................................TGTGTGTGTGTGTGTG-----------------TGTGTG........................................................................................................................................................................	22	26	0.15	0.15	0.00	0.00	0.00	0.00
....GGC-------------------C-----TGT--GCG---TGTGT--GTG------.............................................................................................................................................................................................................................................................................................................................	18	1	4.00	4.00	0.00	0.00	0.00	0.00
...........................................................................................................................................................................TGTGTGTGTGTGTG-----------------TGTGTGTG......................................................................................................................................................................	22	26	0.15	0.15	0.00	0.00	0.00	0.00
..........................................................................................................................................................................GTATCTGTGTGTGTG-----------------TGT...........................................................................................................................................................................	18	28	0.11	0.11	0.00	0.00	0.00	0.00
..........................................................................................................................................................................GTGTGTGTGTGTGTA-----------------TGTGT.........................................................................................................................................................................	20	32	0.09	0.09	0.00	0.00	0.00	0.00
.........................................................................................................................................................................CGTGCGTGTGTGTGTG-----------------TGTG..........................................................................................................................................................................	20	29	0.10	0.10	0.00	0.00	0.00	0.00
.........................................................................................................................................................................GGTGTGTGTGTGTGTG-----------------TGT...........................................................................................................................................................................	19	24	0.13	0.13	0.00	0.00	0.00	0.00
..........................G-----TGT--GTG---TGTGT--GTG------TGTGAGT......................................................................................................................................................................................................................................................................................................................	22	30	0.10	0.10	0.00	0.00	0.00	0.00
..........................................................................................................................................................................GTATGTGTATGTGTG-----------------TGT...........................................................................................................................................................................	18	27	0.11	0.04	0.00	0.00	0.00	0.07
..........................................................................................................................................................................GTGTTTGTGTGTGTG-----------------TTTGTG........................................................................................................................................................................	21	20	0.15	0.15	0.00	0.00	0.00	0.00
............................................................................................................................................................................GTATCTGTGTGTG-----------------TGTGT.........................................................................................................................................................................	18	28	0.11	0.11	0.00	0.00	0.00	0.00
.........................................................................................................................................................................CGTGCGTGTGTGTGTG-----------------TGTGC.........................................................................................................................................................................	21	4	0.75	0.75	0.00	0.00	0.00	0.00
..........................................................................................................................................................................GTTTGTTTGTGTGTG-----------------TGTGT.........................................................................................................................................................................	20	22	0.14	0.14	0.00	0.00	0.00	0.00
......C-------------------G-----TGC--GTG---TGTGT--GTG------TGTGC........................................................................................................................................................................................................................................................................................................................	21	4	0.75	0.75	0.00	0.00	0.00	0.00
..........................................................................................................................................................................GTGTGTGTGCGTGTG-----------------TGAGTG........................................................................................................................................................................	21	20	0.15	0.15	0.00	0.00	0.00	0.00
..............................................................................................................................................................................GTGTGTGTGTG-----------------CGxGTGAG......................................................................................................................................................................	18	2	1.50	1.50	0.00	0.00	0.00	0.00
......C-------------------G-----TGC--GTG---TGTGT--GTG------TGTG.........................................................................................................................................................................................................................................................................................................................	20	29	0.10	0.10	0.00	0.00	0.00	0.00
............................................................................................................................................................................GTGTGTGTGTGTG-----------------TATGTGT.......................................................................................................................................................................	20	32	0.09	0.09	0.00	0.00	0.00	0.00
.........................................................................................................................................................................CGAGTGTGTGTGTGTA-----------------TGT...........................................................................................................................................................................	19	4	0.75	0.75	0.00	0.00	0.00	0.00
...........................................................................................................................................................................GGTGTGTGTGTGTG-----------------TGTGT.........................................................................................................................................................................	19	24	0.13	0.13	0.00	0.00	0.00	0.00
............................................................................................................................................................................GTGTGTGTGTTTG-----------------TGTGTA........................................................................................................................................................................	19	27	0.11	0.11	0.00	0.00	0.00	0.00
..........................................................................................................................................................................GTGTGTGTGTTTGTG-----------------TGTA..........................................................................................................................................................................	19	27	0.11	0.11	0.00	0.00	0.00	0.00
...........................................................................................................................................................................CGTGCGTGTGTGTG-----------------TGTGTG........................................................................................................................................................................	20	29	0.10	0.10	0.00	0.00	0.00	0.00
..........................................................................................................................................................................GTGTGTGTGTGTGTG-----------------TGTGAGT.......................................................................................................................................................................	22	30	0.10	0.10	0.00	0.00	0.00	0.00
............................................................................................................................................................................GTGTGTGTGTGTG-----------------TGTGTGAGT.....................................................................................................................................................................	22	30	0.10	0.10	0.00	0.00	0.00	0.00
............................................................................................................................................................................GTATGTGTATGTG-----------------TGTGT.........................................................................................................................................................................	18	27	0.11	0.04	0.00	0.00	0.00	0.07
.................................GT--GTG---TGTGT--GTG------TATGTGT......................................................................................................................................................................................................................................................................................................................	20	32	0.09	0.09	0.00	0.00	0.00	0.00
.................................GT--GTG---TGTGT--GTG------TGCGCT.......................................................................................................................................................................................................................................................................................................................	19	4	0.75	0.50	0.00	0.25	0.00	0.00
.....................................GTG---TGTGT--GTG------TGTGCGCT.....................................................................................................................................................................................................................................................................................................................	19	4	0.75	0.50	0.00	0.25	0.00	0.00

droWil1

TTGATGCCCCAACACACACCCACCTCC-----TAT--CTA---TCTATCTATC------TCTGTCTC-----------ACCATAACTGAg---------------------------------------------------------------------------------tgtgtgtgtgtgtg-----------------tgtgtatgtTGGCTTTTATGTATTTACGTTGCATATGAAATGATATTTATAGTAAACAGATTATTTTATATGCAGGTATG--TGCAACCGAAGCAGCAGAAGCCAGGCC--CAAGTAGAAGCAAAAGGCCTGAA-----------CATT-------GCACTTGGGC-CATACGC	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
.........................................................................................G---------------------------------------------------------------------------------TGTGCGTCTGTGTG-----------------TGTGT.........................................................................................................................................................................	20	11	2.73	0.00	2.64	0.00	0.09
...........................................................................................................................................................................TGTGTGCGTCTGTG-----------------TGTGT.........................................................................................................................................................................	19	12	1.67	0.00	1.50	0.17	0.00
...........................................................................................................................................................................TGTGTGCGTCTGTG-----------------TGTG..........................................................................................................................................................................	18	16	1.19	0.00	0.94	0.25	0.00
...........................................................................................................................................................................TGTATGTGTGTGTA-----------------TGTGTAT.......................................................................................................................................................................	21	1	16.00	3.00	8.00	5.00	0.00
...........................................................................................................................................................................TGTGTGTGTGTGTG-----------------TGTG..........................................................................................................................................................................	18	38	0.39	0.00	0.16	0.24	0.00
.............................................................................................................................................................................TGTGTGTGTGTG-----------------TGTGTG........................................................................................................................................................................	18	38	0.39	0.00	0.16	0.24	0.00
......................................................................................TGTG---------------------------------------------------------------------------------TGTGTGTGTGTGTG-----------------..............................................................................................................................................................................	18	38	0.39	0.00	0.16	0.24	0.00
...............................................................................................................................................................................TGTGTGTGTG-----------------TGTGTGTG......................................................................................................................................................................	18	38	0.39	0.00	0.16	0.24	0.00
........................................................................................TG---------------------------------------------------------------------------------TGTGTGTGTGTGTG-----------------TG............................................................................................................................................................................	18	38	0.39	0.00	0.16	0.24	0.00
.........................................................................................G---------------------------------------------------------------------------------TGTGTGTGTGTGTG-----------------TGTGTGTG......................................................................................................................................................................	23	16	0.94	0.00	0.19	0.75	0.00
...........................................................................................................................................................................TGTGTGTGTGTGTG-----------------TGTGTGTG......................................................................................................................................................................	22	20	0.65	0.00	0.10	0.55	0.00
......................................................................................TGTG---------------------------------------------------------------------------------TGTGTGTGTGTGTG-----------------TGTG..........................................................................................................................................................................	22	20	0.65	0.00	0.10	0.55	0.00
.........................................................................................G---------------------------------------------------------------------------------TGTGCGTCTGTGTG-----------------TGTG..........................................................................................................................................................................	19	12	1.00	0.00	1.00	0.00	0.00
.............................................................................................................................................................................TGTGTGTGTGTG-----------------TGTGTGTGT.....................................................................................................................................................................	21	26	0.42	0.00	0.23	0.19	0.00
........................................................................................TG---------------------------------------------------------------------------------TGTGTGTGTGTGTG-----------------TGTG..........................................................................................................................................................................	20	30	0.37	0.00	0.07	0.30	0.00
.............................................................................................................................................................................TGTGTGTGTGTG-----------------TGTGTGTG......................................................................................................................................................................	20	30	0.37	0.00	0.07	0.30	0.00
...........................................................................................................................................................................TGTGTGTGTGTGTG-----------------TGTGTG........................................................................................................................................................................	20	30	0.37	0.00	0.07	0.30	0.00
......................................................................................TGTG---------------------------------------------------------------------------------TGTGTGTGTGTGTG-----------------TGT...........................................................................................................................................................................	21	26	0.42	0.00	0.23	0.19	0.00
......................................................................................TGTG---------------------------------------------------------------------------------TGTGTGTGTGTGTG-----------------TG............................................................................................................................................................................	20	30	0.37	0.00	0.07	0.30	0.00
...........................................................................................................................................................................TGTGTGTGTGTGTG-----------------TGTGTGT.......................................................................................................................................................................	21	26	0.42	0.00	0.23	0.19	0.00
........................................................................................TG---------------------------------------------------------------------------------TGTGTGTGTGTGTG-----------------TGTGT.........................................................................................................................................................................	21	26	0.42	0.00	0.23	0.19	0.00
............................................................................................................................................................................GTGTTTGTGTGTG-----------------CGTGT.........................................................................................................................................................................	18	21	0.48	0.10	0.33	0.05	0.00
...........................................................................................................................................................................TGTGTATGTGTGTG-----------------TGTGTGTG......................................................................................................................................................................	22	24	0.42	0.00	0.00	0.42	0.00
......................................................................................TGTG---------------------------------------------------------------------------------TATGTGTGTGTGTG-----------------TGTG..........................................................................................................................................................................	22	24	0.42	0.00	0.00	0.42	0.00
.........................................................................................G---------------------------------------------------------------------------------TGTTTGTGTGTGCG-----------------TGT...........................................................................................................................................................................	18	21	0.48	0.10	0.33	0.05	0.00
.........................................................................................G---------------------------------------------------------------------------------TGTGCGTGTGTGTG-----------------TGT...........................................................................................................................................................................	18	43	0.21	0.00	0.19	0.02	0.00
................................................................................................................................................................................GTGTGCGTG-----------------TGTGTGTGT.....................................................................................................................................................................	18	43	0.21	0.00	0.19	0.02	0.00
.......................................................................................GTG---------------------------------------------------------------------------------TGTGTGTGTGTGTG-----------------T.............................................................................................................................................................................	18	41	0.22	0.07	0.07	0.07	0.00
.......................................................................................GTG---------------------------------------------------------------------------------TGCGTGTGTGTGTG-----------------T.............................................................................................................................................................................	18	43	0.21	0.00	0.19	0.02	0.00
................................................................................................................................................................................GTGTGTGTG-----------------TGTGTGTGT.....................................................................................................................................................................	18	41	0.22	0.07	0.07	0.07	0.00
..............................................................................................................................................................................GTGTGTGTGTG-----------------TGTGTGT.......................................................................................................................................................................	18	41	0.22	0.07	0.07	0.07	0.00
..............................................................................................................................................................................ATGTGTGTGTG-----------------TGTGTATGTG....................................................................................................................................................................	21	13	0.69	0.00	0.62	0.08	0.00
...........................................................................................................................................................................TATGTGTGTGTGTG-----------------TGTGTG........................................................................................................................................................................	20	38	0.24	0.00	0.00	0.24	0.00
............................................................................................................................................................................GTGTGCGTGTGTG-----------------TGTGT.........................................................................................................................................................................	18	43	0.21	0.00	0.19	0.02	0.00
........................................................................................TA---------------------------------------------------------------------------------TGTGTGTGTGTGTG-----------------TGTG..........................................................................................................................................................................	20	38	0.24	0.00	0.00	0.24	0.00
.........................................................................................G---------------------------------------------------------------------------------TGTGTGTGTGTGTG-----------------TGT...........................................................................................................................................................................	18	41	0.22	0.07	0.07	0.07	0.00
.............................................................................................................................................................................TATGTGTGTGTG-----------------TGTGTGTG......................................................................................................................................................................	20	38	0.24	0.00	0.00	0.24	0.00
......................................................................................TATG---------------------------------------------------------------------------------TGTGTGTGTGTGTG-----------------TG............................................................................................................................................................................	20	38	0.24	0.00	0.00	0.24	0.00
..............................................................................................................................................................................GTGTGCGTGTG-----------------TGTGTGT.......................................................................................................................................................................	18	43	0.21	0.00	0.19	0.02	0.00
............................................................................................................................................................................GTGTGTGTGTGTG-----------------TGTGT.........................................................................................................................................................................	18	41	0.22	0.07	0.07	0.07	0.00
.........................................................................................G---------------------------------------------------------------------------------TGTGCGTCTGTGTG-----------------TGT...........................................................................................................................................................................	18	15	0.53	0.00	0.53	0.00	0.00
...........................................................................................................................................................................TGTGTATGTGTGTG-----------------TGTGTG........................................................................................................................................................................	20	33	0.24	0.00	0.03	0.21	0.00
...........................................................................................................................................................................TGTCTGTGTGTGTG-----------------TGTGC.........................................................................................................................................................................	19	18	0.44	0.00	0.39	0.06	0.00
......................................................................................TGTG---------------------------------------------------------------------------------TATGTGTGTGTGTG-----------------TG............................................................................................................................................................................	20	33	0.24	0.00	0.03	0.21	0.00
.............................................................................................................................................................................TGTGTATGTGTG-----------------TGTGTGTG......................................................................................................................................................................	20	33	0.24	0.00	0.03	0.21	0.00
............................................................................................................................................................................GTGTGCGTCTGTG-----------------TGTGT.........................................................................................................................................................................	18	15	0.53	0.00	0.53	0.00	0.00
........................................................................................TG---------------------------------------------------------------------------------TGTATGTGTGTGTG-----------------TGTG..........................................................................................................................................................................	20	33	0.24	0.00	0.03	0.21	0.00
............................................................................................................................................................................GTGTGTGTGTGTG-----------------TGTGTGTG......................................................................................................................................................................	21	25	0.28	0.00	0.04	0.24	0.00
.......................................................................................GTG---------------------------------------------------------------------------------TGTGTGTGTGTGTG-----------------TGTG..........................................................................................................................................................................	21	25	0.28	0.00	0.04	0.24	0.00
.........................................................................................G---------------------------------------------------------------------------------TGTGTGTGTGTGTG-----------------TGTGTGTGC.....................................................................................................................................................................	24	16	0.44	0.00	0.06	0.38	0.00
.........................................................................................G---------------------------------------------------------------------------------TGTGTGTGTGTGTG-----------------TGTGTG........................................................................................................................................................................	21	25	0.28	0.00	0.04	0.24	0.00
.............................................................................................................................................................................TGTGTATGTGTG-----------------TGTGTGTGT.....................................................................................................................................................................	21	29	0.21	0.00	0.07	0.14	0.00
.........................................................................................G---------------------------------------------------------------------------------TGCGTGTGTGTGTG-----------------TGT...........................................................................................................................................................................	18	15	0.40	0.07	0.33	0.00	0.00
........................................................................................TG---------------------------------------------------------------------------------TGTATGTGTGTGTG-----------------TGTGT.........................................................................................................................................................................	21	29	0.21	0.00	0.07	0.14	0.00
............................................................................................................................................................................GTGCGTGTGTGTG-----------------TGTGT.........................................................................................................................................................................	18	15	0.40	0.07	0.33	0.00	0.00
...........................................................................................................................................................................TGTGTATGTGTGTG-----------------TGTGTGT.......................................................................................................................................................................	21	29	0.21	0.00	0.07	0.14	0.00
......................................................................................TGTG---------------------------------------------------------------------------------TATGTGTGTGTGTG-----------------TGT...........................................................................................................................................................................	21	29	0.21	0.00	0.07	0.14	0.00
.............................................................................................................................................................................TATGTGTGTGTG-----------------TGTGTG........................................................................................................................................................................	18	49	0.10	0.00	0.02	0.08	0.00
.........................................................................................A---------------------------------------------------------------------------------TGTGTGTGTGTGTG-----------------TGT...........................................................................................................................................................................	18	18	0.28	0.17	0.11	0.00	0.00
.........................................................................................A---------------------------------------------------------------------------------TATGTGTGTGTGTG-----------------TGTG..........................................................................................................................................................................	19	22	0.23	0.14	0.00	0.09	0.00
...........................................................................................................................................................................TGCGTCTGTGTGTG-----------------TGTGT.........................................................................................................................................................................	19	17	0.29	0.00	0.29	0.00	0.00
............................................................................................................................................................................ATGTGTGTGTGTG-----------------TGTGT.........................................................................................................................................................................	18	18	0.28	0.17	0.11	0.00	0.00
........................................................................................TA---------------------------------------------------------------------------------TGTGTGTGTGTGTG-----------------TG............................................................................................................................................................................	18	49	0.10	0.00	0.02	0.08	0.00
.............................................................................................................................................................................TGTGTGTGTGTG-----------------TGTGTGT.......................................................................................................................................................................	19	35	0.14	0.03	0.06	0.06	0.00
......................................................................................TATG---------------------------------------------------------------------------------TGTGTGTGTGTGTG-----------------..............................................................................................................................................................................	18	49	0.10	0.00	0.02	0.08	0.00
........................................................................................TG---------------------------------------------------------------------------------TGTGTGTGTGTGTG-----------------TGT...........................................................................................................................................................................	19	35	0.14	0.03	0.06	0.06	0.00
......................................................................................TGTG---------------------------------------------------------------------------------TGTGTGTGTGTGTG-----------------T.............................................................................................................................................................................	19	35	0.14	0.03	0.06	0.06	0.00
...........................................................................................................................................................................TGTGTGTGTGTGTG-----------------TGTGT.........................................................................................................................................................................	19	35	0.14	0.03	0.06	0.06	0.00
.........................................................................................G---------------------------------------------------------------------------------TTTGTGTGTATGTG-----------------TGTGT.........................................................................................................................................................................	20	12	0.42	0.25	0.17	0.00	0.00
...............................................................................................................................................................................TGTGTGTGTG-----------------TGTGTGTGT.....................................................................................................................................................................	19	35	0.14	0.03	0.06	0.06	0.00
.........................................................................................A---------------------------------------------------------------------------------TGTGTGTGTGTGTG-----------------TGTG..........................................................................................................................................................................	19	15	0.33	0.00	0.13	0.20	0.00
......................................................................................TATG---------------------------------------------------------------------------------TGTGTGTGTGTGTG-----------------TGTG..........................................................................................................................................................................	22	26	0.19	0.00	0.04	0.15	0.00
...........................................................................................................................................................................TATGTGTGTGTGTG-----------------TGTGTGTG......................................................................................................................................................................	22	26	0.19	0.00	0.04	0.15	0.00
......................................................................................TGCG---------------------------------------------------------------------------------TCTGTGTGTGTGTG-----------------T.............................................................................................................................................................................	19	17	0.29	0.00	0.29	0.00	0.00
...........................................................................................................................................................................TATGTGTGTGTGTG-----------------TGTG..........................................................................................................................................................................	18	49	0.10	0.00	0.02	0.08	0.00
...............................................................................................................................................................................TATGTGTGTG-----------------TGTGTGTG......................................................................................................................................................................	18	49	0.10	0.00	0.02	0.08	0.00
.............................................................................................................................................................................TGTATGTGTGTG-----------------TGTGTGTG......................................................................................................................................................................	20	35	0.11	0.00	0.09	0.03	0.00
.............................................................................................................................................................................TGTATGTGTGTG-----------------TGTGTG........................................................................................................................................................................	18	44	0.09	0.00	0.00	0.09	0.00
.........................................................................................G---------------------------------------------------------------------------------TGTGTGTGTGTGTG-----------------TGTGT.........................................................................................................................................................................	20	30	0.13	0.10	0.03	0.00	0.00
......................................................................................TGTG---------------------------------------------------------------------------------TATGTGTGTGTGTG-----------------..............................................................................................................................................................................	18	41	0.10	0.00	0.00	0.10	0.00
.........................................................................................G---------------------------------------------------------------------------------TGTGTGTGTGTGTG-----------------TGTGTGTGT.....................................................................................................................................................................	24	12	0.33	0.08	0.00	0.25	0.00
...........................................................................................................................................................................TGTGTGTGTGTGTG-----------------TGTGTGAG......................................................................................................................................................................	22	23	0.17	0.00	0.04	0.13	0.00
...........................................................................................................................................................................TGTGTATGTGTGTG-----------------TGTG..........................................................................................................................................................................	18	41	0.10	0.00	0.00	0.10	0.00
......................................................................................TGTG---------------------------------------------------------------------------------TGTGTGTGTGTGTG-----------------TGAG..........................................................................................................................................................................	22	23	0.17	0.00	0.04	0.13	0.00
........................................................................................AC---------------------------------------------------------------------------------TGTGTGGGTGTGTG-----------------TG............................................................................................................................................................................	18	2	2.00	0.00	1.00	1.00	0.00
..............................................................................................................................................................................GTGTGTGTGTG-----------------TGTGTGTGT.....................................................................................................................................................................	20	30	0.13	0.10	0.03	0.00	0.00
......................................................................................TGTG---------------------------------------------------------------------------------TGTGTGTGTGTGTG-----------------TGC...........................................................................................................................................................................	21	31	0.13	0.00	0.03	0.10	0.00
.........................................................................................G---------------------------------------------------------------------------------TGTGTGTGTGTGTG-----------------TGTGTGT.......................................................................................................................................................................	22	21	0.19	0.05	0.05	0.10	0.00
....................................................................................ACTGTG---------------------------------------------------------------------------------TGGGTGTGTGTG.................................................................................................................................................................................................	18	2	2.00	0.00	1.00	1.00	0.00
...........................................................................................................................................................................TGTGTGTGTGTGTG-----------------TGTGTGC.......................................................................................................................................................................	21	31	0.13	0.00	0.03	0.10	0.00
...........................................................................................................................................................................TGTATGTGTGTGTG-----------------TGTGTG........................................................................................................................................................................	20	35	0.11	0.00	0.09	0.03	0.00
......................................................................................TGTA---------------------------------------------------------------------------------TGTGTGTGTGTGTG-----------------..............................................................................................................................................................................	18	44	0.09	0.00	0.00	0.09	0.00
........................................................................................TG---------------------------------------------------------------------------------TGTGTGTGTGTGTG-----------------TGTGC.........................................................................................................................................................................	21	31	0.13	0.00	0.03	0.10	0.00
............................................................................................................................................................................GTGTGTGTGTGTG-----------------TGTGTGTGT.....................................................................................................................................................................	22	21	0.19	0.05	0.05	0.10	0.00
..................................................................................................................................................................................GTGTGTG-----------------TGTGTATATGG...................................................................................................................................................................	18	3	1.33	0.00	1.33	0.00	0.00
.......................................................................................GTG---------------------------------------------------------------------------------TGTGTGTGTGTGTG-----------------TGTGT.........................................................................................................................................................................	22	21	0.19	0.05	0.05	0.10	0.00
.......................................................................................GTG---------------------------------------------------------------------------------TGTGTGTGTGTGTG-----------------TGT...........................................................................................................................................................................	20	30	0.13	0.10	0.03	0.00	0.00
.............................................................................................................................................................................TGTGTATGTGTG-----------------TGTGTG........................................................................................................................................................................	18	41	0.10	0.00	0.00	0.10	0.00
...............................................................................................................................................................................TGTGTATGTG-----------------TGTGTGTG......................................................................................................................................................................	18	41	0.10	0.00	0.00	0.10	0.00
.............................................................................................................................................................................TGTGTGTGTGTG-----------------TGTGTGTGC.....................................................................................................................................................................	21	31	0.13	0.00	0.03	0.10	0.00

droVir3

TTGATGT-------------------CGTCTTTGTGT--GCCATGTGTGTGTG------TGTGTGTCCAT----------------------------------------------------------------------------------------------------------------------------------TTTGTGTGTGTTGGCTTTTATGTATTTACGTTGCATATGAAATGATATTTATAGTAAACAGATTATTTTATATGCAGGTATACATGCCAG------------------A----GCAGTGCATGCAAC--TGC-CCA-----------CAAT-------GCACATTT-C-TATCCGC	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
...........................................TGTGTGTGTG------TGTGTGTG.....................................................................................................................................................................................................................................................................................................................	18	24	0.75	0.33	0.29	0.08	0.00	0.04
..........................................GTGTGTGTGTG------TGTGTGT......................................................................................................................................................................................................................................................................................................................	18	23	0.43	0.26	0.09	0.09	0.00	0.00
...........................................TGTGTGTGTG------TGTGTGTGTA...................................................................................................................................................................................................................................................................................................................	20	22	0.36	0.23	0.09	0.00	0.05	0.00
........................................ATATGTGTGTGTG------TGTGTGT......................................................................................................................................................................................................................................................................................................................	20	9	0.89	0.89	0.00	0.00	0.00	0.00
...........................................TGTGTGTGTG------TGAGTGTG.....................................................................................................................................................................................................................................................................................................................	18	30	0.13	0.03	0.07	0.03	0.00	0.00
.........................................TGTGTGTGTGTG------TGTGTGTC.....................................................................................................................................................................................................................................................................................................................	20	21	0.19	0.19	0.00	0.00	0.00	0.00
...........................................TGTGTGTGTG------TGTGTGTT.....................................................................................................................................................................................................................................................................................................................	18	29	0.10	0.03	0.07	0.00	0.00	0.00
..........................................ATGTGTATGTG------TGTGTGTG.....................................................................................................................................................................................................................................................................................................................	19	9	0.33	0.33	0.00	0.00	0.00	0.00
...........................................TGTGTGTGTG------TGTGTGTGTAT----------------------------------------------------------------------------------------------------------------------------------T...............................................................................................................................................................................	22	7	0.43	0.29	0.14	0.00	0.00	0.00
..........................................GTGTGTGCGTG------TGTGTGT......................................................................................................................................................................................................................................................................................................................	18	26	0.12	0.00	0.00	0.12	0.00	0.00
..........................................ATGTGTGTGTG------TGTGCGTG.....................................................................................................................................................................................................................................................................................................................	19	12	0.25	0.25	0.00	0.00	0.00	0.00

droMoj3

TTGATGT-------------------CGTCGTTGTGT--ACCAT--------GCATTCG---------------------------TGTG---------------------------------------------------------------------------------TGCCTGTGTGTGTG-----------------CGTGTGTGTTAGCTTTTATGTATTTACGTTGCATATGAAATGATATTTATAGTAAACAGATTATTTTATATGCAGGTATACATGCCAG------------------GCCGGCCAGTGCATGCAAC--TTC-TCT-----------CAAT-------GCATATTC-C-AATCCAC	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
.................................................................................................................................................................................TATGTGTG-----------------CGTGTGTGTTTG..................................................................................................................................................................	20	2	21.50	13.00	7.00	1.50	0.00
.................................................................................................................................................................................TATGTGTG-----------------CGTGTGTGTTT...................................................................................................................................................................	19	2	11.50	6.50	3.50	1.50	0.00
........................................................................................TA---------------------------------------------------------------------------------TGTCTGTGTGTGTG-----------------CGTGT.........................................................................................................................................................................	21	1	11.00	5.00	0.00	0.00	6.00
........................................................................................TG---------------------------------------------------------------------------------TGTGTGTGTGTGTG-----------------CGTGT.........................................................................................................................................................................	21	1	7.00	6.00	1.00	0.00	0.00
........................................................................................TA---------------------------------------------------------------------------------TGTCTGTGTGTGTG-----------------CGTG..........................................................................................................................................................................	20	1	4.00	1.00	1.00	1.00	1.00
..............................................................................................................................................................................GTGTGTGTGTG-----------------TGTGTGTGT.....................................................................................................................................................................	20	7	0.57	0.57	0.00	0.00	0.00
........................................................................................TG---------------------------------------------------------------------------------TGTGTGTGTGTGTG-----------------CGTGTG........................................................................................................................................................................	22	1	3.00	2.00	0.00	0.00	1.00

droGri2

TTGATGT-------------------TGTCGTTGAGTCT---At--------gtctgtg---------------------------tgtg---------------------------------------------------------------------------------tgtgtgtgtgtgtgtgtgcgagtgtCCAGTTCGTGTGTGTTGGCTTTTATGTATTTACGTTGCATATGAAATGATATTTATAGTAAACAGATTATTTTATATGCAGGTATACATGCAAC---------------------------------------TCCTTCT-----------CAAT-------GGATCCCC--------AC	Size	Hit Count	Total Norm	V109 Male body
.......................................................TGTG---------------------------TGTx---------------------------------------------------------------------------------TGTGTGTGTGTGTGTC.............................................................................................................................................................................................	23	28	0.14	0.14
.........................................................TG---------------------------TGTG---------------------------------------------------------------------------------TxTGTGTGTGTGTGTGTC...........................................................................................................................................................................................	23	28	0.14	0.14
........................................................................................TG---------------------------------------------------------------------------------TGTGTGTGTGCGTGCGTGC..........................................................................................................................................................................................	21	1	4.00	4.00
.......................................................TGTG---------------------------TGTG---------------------------------------------------------------------------------TGTGTGTGTGCGTG...............................................................................................................................................................................................	22	34	0.09	0.09
.....................................................TGTGTG---------------------------TGTG---------------------------------------------------------------------------------TGTGTGTGCGTG.................................................................................................................................................................................................	22	34	0.09	0.09
.........................................................TG---------------------------TGTG---------------------------------------------------------------------------------TGTGTTTGTGTGT................................................................................................................................................................................................	19	41	0.07	0.07
.........................................................TG---------------------------TGTG---------------------------------------------------------------------------------TGTGTGTGTGTGCGTG.............................................................................................................................................................................................	22	34	0.09	0.09
.......................................................TGTG---------------------------TGTG---------------------------------------------------------------------------------TGTTTGTGTGT..................................................................................................................................................................................................	19	41	0.07	0.07
........................................................................................TG---------------------------------------------------------------------------------TGTGTGTGTGTGTGTGTGC..........................................................................................................................................................................................	21	18	0.17	0.17
.......................................................TGTG---------------------------TGTG---------------------------------------------------------------------------------TGTGTGTGTGTGC................................................................................................................................................................................................	21	18	0.17	0.17
...........................................T--------GTGTGTG---------------------------TGTG---------------------------------------------------------------------------------TGTGTGCGTG...................................................................................................................................................................................................	22	34	0.09	0.09
.....................................................TGTGTG---------------------------TGTG---------------------------------------------------------------------------------TTTGTGTGT....................................................................................................................................................................................................	19	41	0.07	0.07
......................................................................................TGTG---------------------------------------------------------------------------------TGTGTGTTTGTGTGT..............................................................................................................................................................................................	19	41	0.07	0.07
...........................................................................................................................................................................TGTGTGTGTGTTTGTGTGT..........................................................................................................................................................................................	19	41	0.07	0.07
.............................................................................................................................................................................TGTGTGTGTGTGTGTGTGCGTG.....................................................................................................................................................................................	22	34	0.09	0.09
...........................................................................................................................................................................TGTGTGTGTGTGTGTGTGCGTG.......................................................................................................................................................................................	22	34	0.09	0.09
........................................................................................TG---------------------------------------------------------------------------------TGTGTGTGTGTGTGTGCGTG.........................................................................................................................................................................................	22	34	0.09	0.09
......................................................................................TGTG---------------------------------------------------------------------------------TGTGTGTGTGTGTGCGTG...........................................................................................................................................................................................	22	34	0.09	0.09
...........................................T--------GTGTGTG---------------------------TGTT---------------------------------------------------------------------------------TGTGTGT......................................................................................................................................................................................................	19	41	0.07	0.07
.........................................................TG---------------------------TGTG---------------------------------------------------------------------------------TGTGTGTGTGTGTGC..............................................................................................................................................................................................	21	18	0.17	0.17
........................................................................................TG---------------------------------------------------------------------------------TGTGTGTGTTTGTGTGT............................................................................................................................................................................................	19	41	0.07	0.07
......................................................................................TGTG---------------------------------------------------------------------------------TGTGTGTGTGTGTGTGC............................................................................................................................................................................................	21	18	0.17	0.17

12-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droAna3	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image		None
UNAFold Image		None

20-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droEug1	droBia1	droTak1	droEle1	droRho1	droFic1	droKik1	droAna3	droBip1	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image