dme-mir-279- Best orthologs

dme-mir-279	chr3R:25041307-25041406 +	Known_mirbase
[View on miRBase]	[View on UCSC Genome Browser {Cornell Mirror}]	intergenic

Legend:

   mature strand at position 25041373-25041392
   star strand at position 25041328-25041353
   mutations
   read mismatches

20-way Fast Statistical Aligner (FSA) re-alignment

Visually pleasing best hits from LASTZ and MAF

Species	Coordinate	Source	Confidence	Alignment
dm3	chr3R:25041292-25041421 +		1	A------------CTGG--------AGCT------GGAATTGG-AATTCA---TACTACTGTTTTTAGTGGGTGGGGGTCCAGTGTTTCACATT-GATTTTC--TTAGTATTTGTGACTAGATCCACACTCATTAATAACGGTAGTTCAATCATCAA--------------GCACGT---------
droSim1	chr3R:24712183-24712312 +	LASTZ	1	A------------CTGG--------AGCT------GGAATTGG-AATTCA---TACTGCTGTTTTTAGTGGGTGGGGGTCCAGTGTTTCACATT-GATTTTC--TTAGTATTTGTGACTAGATCCACACTCATTAATAACGGTAGTTCAATCATCAA--------------GCACGT---------
droSec1	super_4:3904072-3904201 +	LASTZ	1	A------------CTGG--------AGCT------GGAATTGG-AATTCA---TACTGCTGTTTTTAGTGGGTGGGGGTCCAGTGTTTCACATT-GATTTTC--TTAGTATTTGTGACTAGATCCACACTCATTAATAACGGTAGTTCAATCATCAA--------------GCACGT---------
droYak2	chr3R:21456037-21456166 -	LASTZ	1	A------------CTGG--------AACT------AGAATTGA-AATTCA---TACTACTGTTTTTAGTGGGTGAGGGTCCAGTGCTTCACATT-GATTTTC--TTAGTATTTGTGACTAGATCCACACTCATTAATAACGGTAGTTCAATCATCAA--------------GCACGT---------
droEre2	scaffold_4820:2989050-2989173 -	LASTZ	1	A------------CTGG--------------------AATTGG-AATTCA---TACTACTGTTTTTAGTGGGTGGGGGTCCAGTGTTTCACATT-GATTTTC--TTAGTATTTGTGACTAGATCCACACTCATTAATAACGGTAGTTCAATCATCAA--------------GCACGT---------
droEug1	scf7180000409787:532529-532670 -	LASTZ	4	ATTTGAATCGGAGCTGG--------AAAT------GAAACTGG-AATTCA---TACTACTGTTTTTAGTGGGTGGGGGTCCAGTGTTTCACATT-GATTTTC--TTAGTATTTGTGACTAGATCCACACTCATTAATAACGGTAGTTCAATCATCGA--------------GCACGT---------
droBia1	scf7180000302136:3097220-3097349 -	LASTZ	4	A------------CTGG--------AACT------GGAATTGG-AATTCA---TACTACTGTTTTTAGTGGGTGGGGGTCCAGTGTTTCACATT-GATCTTC--TTAGTAGTTGTGACTAGATCCACACTCATTAATAACGGTAGTTCAATCATCAA--------------GCACGT---------
droTak1	scf7180000415310:301797-301920 +	LASTZ	4	C---------------------------T------GGAATTTG-AATTCA---TACTACTGTTTTTAGTGGGTGGGGGTCCAGTGTTTCACATT-GATTTTC--TTAGTATTTGTGACTAGATCCACACTCATTAATAACGGTAGTTCAATCATCAT--------------GAATGT---------
droEle1	scf7180000491280:1228865-1228988 +	LASTZ	4	A------------ATGG--------------------AAATGG-AATTCA---TACTACTGTTTTTAGTGGGTGGGGGTCCAGTGTTTCACATT-GATTTTC--TTAGTATTTGTGACTAGATCCACACTCATTAATAACGGTAGTTCAGTCATCAA--------------GCACGT---------
droRho1	scf7180000779659:60155-60277 -	LASTZ	4	A------------ATGG--------------------AAATGG-AATTCA---TACTTCTGTTTTTAGTGGGTGGGGGTCCAGTGTTTCACATT-GATTTT---TTAGTATTTGTGACTAGATCCACACTCATTAATAACGGTAGTTCAATCATCAT--------------GCACGT---------
droFic1	scf7180000453776:337748-337858 +	LASTZ	4	-----------------------------------------------TCA---TACTACTGTTTTTAGTGGGTGGGGGTCCAGTGTTTCACATT-GATTTTC--TTAGTATTTGTGACTAGATCCACACTCATTAATAACGGTAGTTCAATCATCAA--------------GCACGT---------
droKik1	scf7180000302466:432600-432739 -	LASTZ	4	G------------CGGC--------GGCGATATCTCGT-GTAC-TATTCATACTACTACTGTTTTTAGTGGGTGGGGGTCCAGTGTTTCACATTTGATTT-CTTCTGATATTTGTGACTAGATCCACACTCATTAATAACGGTAGTTCAGTCAGCAA--------------ACACGT---------
droAna3	scaffold_13340:14200293-14200422 -	LASTZ	1	G------------GCGG--------CGAT------ACTAATAC-TACTAC---TACTACTGTTTTTAGTGGGTGAGGGTCCAGTGTTTCACATT-GATTT-C--T--GTATTTGTGACTAGATCCACACTCATTAATAACGGTAGTTCAATCAGCAA-----------GGCCCACGT---------
droBip1	scf7180000395971:963485-963602 +	LASTZ	4	A------------C---------------------------------------TACTACTGTTTTTAGTGGGTGAGGGTCCAGTGTTTCACATT-GATTT-C--T--GTATTTGTGACTAGATCCACACTCATTAATAACGGTAGTTCAATCAGCAA-----------GGCCCACGTGCTCCCCAT
dp4	chr2:1881900-1882031 +	LASTZ	1	A------------GTGG--------TTTT------A-AGTTCG-CGATCA---TACTACTGTTTTTAGTGAGTGAGGGTCCAGTGTTTCACATT-GATTTTC--TTAGTATTTGTGACTAGATCCACACTCATTAATAACGGTAGTTCAATCAACAG-----------AATGCACGT---------
droPer1	super_7:2045298-2045429 +	LASTZ	1	A------------GTGG--------TTTT------A-AGTTCG-CGATCA---TACTACTGTTTTTAGTGAGTGAGGGTCCAGTGTTTCACATT-GATTTTC--TTAGTATTTGTGACTAGATCCACACTCATTAATAACGGTAGTTCAATCAACAG-----------AATGCACGT---------
droWil1	scaffold_181108:1734340-1734482 +	LASTZ	1	A------------CTAC--------TACT------ACGACTAG-AACAAC---TACTACTGTTTTTAGTGAGTGAGGGTCCAGTGTTTCACATT-AAATAT---TTAGTATTTGTGACTAGATCCACACTCATTAATAACGGTAGTTCAATCATCGAAAATAAAAAAAGAAACACGT---------
droVir3	scaffold_12822:2330907-2331031 +	LASTZ	1	A------------CGAG-----------T------GGATCG-AATATGCG---TACTACTGTTTTTAGTGAGTGAGGGTCCAGTGTTTCACATT-CGTTTTT-TCAAGTATTTGTGACTAGATCCACACTCATTAACAACGGTAGTTCAATCAGCAA--------------ATA------------
droMoj3	scaffold_6540:26447118-26447234 +	LASTZ	1	A------------CG-G--------TTCT------G-ATCG-GAAATACG---TACTACTGTTTTTAGTGAGTGAGGGTCCAGTGTTTCACATT-GTTTGCT--TAAGTATTTGTGACTAGATCCACACTCATTAAAAACGGTAGTTCAATC----------------------------------
droGri2	scaffold_14624:3249724-3249850 +	LASTZ	1	A------------TAAGGGAAGTGATTTA-----------TGGATAACCG---TATTACTGTTTTTAGTGGGTGAGGGTCCAGTGTTTCACATT-GTT--TA--TTTGTATTTGTGACTAGATCCACACTCATTAAAAACGGTAGTTCAATCAACA-------------------GT---------

Legend

0- The ortholog is absent. A better synthenic sequence candidate could not be found.
1- Reads w/ good pileup on mature and star strand & folds into hairpin structure.
2- Reads w/ good pileup on mature and star strand BUT does not fold into hairpin structure.
3- Sporadic reads & folds into a hairpin structure.
4- No reads but folds into a hairpin structure.
5- Ortholog is confident but miRNA appears absent (no reads and does not fold into a hairpin)

Re-alignment after removal of non-confident orthologs

Species	Alignment
dm3	A------------CTGG--------AGCT------GGAATTGG-AATTCA---TACTACTGTTTTTAGTGGGTGGGGGTCCAGTGTTTCACATT-GATTTTC--TTAGTATTTGTGACTAGATCCACACTCATTAATAACGGTAGTTCAATCATCAA--------------GCACGT---------
droSim1	A------------CTGG--------AGCT------GGAATTGG-AATTCA---TACTGCTGTTTTTAGTGGGTGGGGGTCCAGTGTTTCACATT-GATTTTC--TTAGTATTTGTGACTAGATCCACACTCATTAATAACGGTAGTTCAATCATCAA--------------GCACGT---------
droSec1	A------------CTGG--------AGCT------GGAATTGG-AATTCA---TACTGCTGTTTTTAGTGGGTGGGGGTCCAGTGTTTCACATT-GATTTTC--TTAGTATTTGTGACTAGATCCACACTCATTAATAACGGTAGTTCAATCATCAA--------------GCACGT---------
droYak2	A------------CTGG--------AACT------AGAATTGA-AATTCA---TACTACTGTTTTTAGTGGGTGAGGGTCCAGTGCTTCACATT-GATTTTC--TTAGTATTTGTGACTAGATCCACACTCATTAATAACGGTAGTTCAATCATCAA--------------GCACGT---------
droEre2	A------------CTGG--------------------AATTGG-AATTCA---TACTACTGTTTTTAGTGGGTGGGGGTCCAGTGTTTCACATT-GATTTTC--TTAGTATTTGTGACTAGATCCACACTCATTAATAACGGTAGTTCAATCATCAA--------------GCACGT---------
droEug1	ATTTGAATCGGAGCTGG--------AAAT------GAAACTGG-AATTCA---TACTACTGTTTTTAGTGGGTGGGGGTCCAGTGTTTCACATT-GATTTTC--TTAGTATTTGTGACTAGATCCACACTCATTAATAACGGTAGTTCAATCATCGA--------------GCACGT---------
droBia1	A------------CTGG--------AACT------GGAATTGG-AATTCA---TACTACTGTTTTTAGTGGGTGGGGGTCCAGTGTTTCACATT-GATCTTC--TTAGTAGTTGTGACTAGATCCACACTCATTAATAACGGTAGTTCAATCATCAA--------------GCACGT---------
droTak1	C---------------------------T------GGAATTTG-AATTCA---TACTACTGTTTTTAGTGGGTGGGGGTCCAGTGTTTCACATT-GATTTTC--TTAGTATTTGTGACTAGATCCACACTCATTAATAACGGTAGTTCAATCATCAT--------------GAATGT---------
droEle1	A------------ATGG--------------------AAATGG-AATTCA---TACTACTGTTTTTAGTGGGTGGGGGTCCAGTGTTTCACATT-GATTTTC--TTAGTATTTGTGACTAGATCCACACTCATTAATAACGGTAGTTCAGTCATCAA--------------GCACGT---------
droRho1	A------------ATGG--------------------AAATGG-AATTCA---TACTTCTGTTTTTAGTGGGTGGGGGTCCAGTGTTTCACATT-GATTTT---TTAGTATTTGTGACTAGATCCACACTCATTAATAACGGTAGTTCAATCATCAT--------------GCACGT---------
droFic1	-----------------------------------------------TCA---TACTACTGTTTTTAGTGGGTGGGGGTCCAGTGTTTCACATT-GATTTTC--TTAGTATTTGTGACTAGATCCACACTCATTAATAACGGTAGTTCAATCATCAA--------------GCACGT---------
droKik1	G------------CGGC--------GGCGATATCTCGT-GTAC-TATTCATACTACTACTGTTTTTAGTGGGTGGGGGTCCAGTGTTTCACATTTGATTT-CTTCTGATATTTGTGACTAGATCCACACTCATTAATAACGGTAGTTCAGTCAGCAA--------------ACACGT---------
droAna3	G------------GCGG--------CGAT------ACTAATAC-TACTAC---TACTACTGTTTTTAGTGGGTGAGGGTCCAGTGTTTCACATT-GATTT-C--T--GTATTTGTGACTAGATCCACACTCATTAATAACGGTAGTTCAATCAGCAA-----------GGCCCACGT---------
droBip1	A------------C---------------------------------------TACTACTGTTTTTAGTGGGTGAGGGTCCAGTGTTTCACATT-GATTT-C--T--GTATTTGTGACTAGATCCACACTCATTAATAACGGTAGTTCAATCAGCAA-----------GGCCCACGTGCTCCCCAT
dp4	A------------GTGG--------TTTT------A-AGTTCG-CGATCA---TACTACTGTTTTTAGTGAGTGAGGGTCCAGTGTTTCACATT-GATTTTC--TTAGTATTTGTGACTAGATCCACACTCATTAATAACGGTAGTTCAATCAACAG-----------AATGCACGT---------
droPer1	A------------GTGG--------TTTT------A-AGTTCG-CGATCA---TACTACTGTTTTTAGTGAGTGAGGGTCCAGTGTTTCACATT-GATTTTC--TTAGTATTTGTGACTAGATCCACACTCATTAATAACGGTAGTTCAATCAACAG-----------AATGCACGT---------
droWil1	A------------CTAC--------TACT------ACGACTAG-AACAAC---TACTACTGTTTTTAGTGAGTGAGGGTCCAGTGTTTCACATT-AAATAT---TTAGTATTTGTGACTAGATCCACACTCATTAATAACGGTAGTTCAATCATCGAAAATAAAAAAAGAAACACGT---------
droVir3	A------------CGAG-----------T------GGATCG-AATATGCG---TACTACTGTTTTTAGTGAGTGAGGGTCCAGTGTTTCACATT-CGTTTTT-TCAAGTATTTGTGACTAGATCCACACTCATTAACAACGGTAGTTCAATCAGCAA--------------ATA------------
droMoj3	A------------CG-G--------TTCT------G-ATCG-GAAATACG---TACTACTGTTTTTAGTGAGTGAGGGTCCAGTGTTTCACATT-GTTTGCT--TAAGTATTTGTGACTAGATCCACACTCATTAAAAACGGTAGTTCAATC----------------------------------
droGri2	A------------TAAGGGAAGTGATTTA-----------TGGATAACCG---TATTACTGTTTTTAGTGGGTGAGGGTCCAGTGTTTCACATT-GTT--TA--TTTGTATTTGTGACTAGATCCACACTCATTAAAAACGGTAGTTCAATCAACA-------------------GT---------

20-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droEug1	droBia1	droTak1	droEle1	droRho1	droFic1	droKik1	droAna3	droBip1	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image

Small RNA-seq read pileup

Species

Alignment

droSim1

A------------CTGG--------AGCT------GGAATTGG-AATTCA---TACTGCTGTTTTTAGTGGGTGGGGGTCCAGTGTTTCACATT-GATTTTC--TTAGTATTTGTGACTAGATCCACACTCATTAATAACGGTAGTTCAATCATCAA--------------GCACGT---------	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
..................................................................................................................TGACTAGATCCACACTCATT....................................................	20	1	15721.00	1375.00	10458.00	2634.00	1254.00
..................................................................................................................TGACTAGATCCACACTCATTAA..................................................	22	1	7388.00	871.00	3195.00	528.00	2794.00
..................................................................................................................TGACTAGATCCACACTCATTA...................................................	21	1	5755.00	1032.00	2790.00	511.00	1422.00
..................................................................................................................TGACTAGATCCACACTCAT.....................................................	19	1	2951.00	256.00	2284.00	257.00	154.00
..................................................................................................................TGACTAGATCCACACTCATTAAA.................................................	23	1	2442.00	396.00	561.00	83.00	1402.00
..................................................................................................................TGACTAGATCCACACTCATTAC..................................................	22	1	599.00	25.00	377.00	63.00	134.00
..................................................................................................................TGACTAGATCCACACTCA......................................................	18	1	377.00	1.00	311.00	52.00	13.00
..................................................................................................................TGACTAGATCCACACTCATC....................................................	20	1	252.00	1.00	190.00	44.00	17.00
..................................................................................................................TGACTAGATCCACACTCATTAAAA................................................	24	1	204.00	32.00	19.00	3.00	150.00
..................................................................AGTGGGTGGGGGTCCAGTGTTTCACA..............................................................................................	26	1	181.00	179.00	1.00	0.00	1.00
..................................................................................................................TGACTAGATCCACACTCATTT...................................................	21	1	135.00	16.00	102.00	14.00	3.00
..................................................................................................................TGACTAGATCCACACTCATTAT..................................................	22	1	91.00	31.00	38.00	9.00	13.00
..................................................................................................................TGACTAGATCCACACTCATTAAC.................................................	23	1	80.00	1.00	27.00	1.00	51.00
...................................................................GTGGGTGGGGGTCCAGTGTTTCACA..............................................................................................	25	1	70.00	70.00	0.00	0.00	0.00
..................................................................................................................TGACTAGATCCACACTCATA....................................................	20	1	64.00	4.00	51.00	9.00	0.00
..................................................................................................................TGACTAGATCCCCACTCATTAA..................................................	22	1	64.00	64.00	0.00	0.00	0.00
..................................................................................................................TGACTAGATCCACACTCCTTA...................................................	21	1	51.00	33.00	18.00	0.00	0.00
..................................................................................................................TGACTAGATCCACACTCAC.....................................................	19	1	41.00	0.00	37.00	3.00	1.00
..................................................................................................................TGACTAGATCCACACTCT......................................................	18	1	37.00	0.00	33.00	4.00	0.00
..................................................................................................................TGACTAGATCCACACTCATTAAT.................................................	23	1	36.00	11.00	15.00	1.00	9.00
..................................................................................................................TGACTAGATCCACACTCATTAAAAA...............................................	25	1	30.00	9.00	2.00	0.00	19.00
..................................................................................................................TGACTAGATCCACACTCATTACA.................................................	23	1	24.00	9.00	3.00	0.00	12.00
..................................................................................................................TGACTAGATCCACACTCATG....................................................	20	1	22.00	0.00	17.00	3.00	2.00
..................................................................................................................TGACTAGATCCACACTCCTT....................................................	20	1	21.00	17.00	4.00	0.00	0.00
..................................................................................................................TGGCTAGATCCACACTCATT....................................................	20	1	19.00	4.00	12.00	1.00	2.00
..................................................................................................................TGACTAGATCCACACTCATTAG..................................................	22	1	18.00	2.00	6.00	2.00	8.00
..................................................................AGTGGGTGGGGGTCCAGTGTTTCA................................................................................................	24	1	17.00	17.00	0.00	0.00	0.00
..................................................................................................................TGACTAGATCCACCCTCATTA...................................................	21	1	15.00	15.00	0.00	0.00	0.00
..................................................................................................................TGACTAGATCCACACCCATT....................................................	20	1	15.00	5.00	6.00	1.00	3.00
..................................................................AGTGGGTGGGGGTCCAGTGTTTCAC...............................................................................................	25	1	14.00	14.00	0.00	0.00	0.00
..................................................................................................................TGACTAGATCCACGCTCATT....................................................	20	1	14.00	3.00	8.00	3.00	0.00
..................................................................................................................TGACTAGATCCACACTCATTTT..................................................	22	1	13.00	0.00	13.00	0.00	0.00
..................................................................................................................TGACTAGATCCACACTCAA.....................................................	19	1	12.00	0.00	7.00	2.00	3.00
..................................................................................................................TGACTAGATCCACACTCATTACC.................................................	23	1	12.00	0.00	11.00	0.00	1.00
..................................................................................................................TGACTAGATCCACACTCATTAAAT................................................	24	1	12.00	2.00	4.00	0.00	6.00
..................................................................................................................TGACTATATCCACACTCATT....................................................	20	1	12.00	0.00	6.00	4.00	2.00
..................................................................................................................TGACTAGATCCGCACTCATT....................................................	20	1	11.00	5.00	3.00	3.00	0.00
..................................................................................................................TGACTAGATCCCCACTCATTAAA.................................................	23	1	11.00	11.00	0.00	0.00	0.00
..................................................................................................................TGACTAGATCCACACTCATTATT.................................................	23	1	11.00	0.00	10.00	0.00	1.00
..................................................................................................................TGACTAGATCCACACTCATAA...................................................	21	1	11.00	0.00	8.00	0.00	3.00
..................................................................................................................TGACTAGGTCCACACTCATTAA..................................................	22	1	11.00	4.00	2.00	0.00	5.00
..................................................................................................................CGACTAGATCCACACTCATT....................................................	20	1	11.00	3.00	7.00	0.00	1.00
..................................................................................................................TGACTAGATCCACACTCATTACT.................................................	23	1	10.00	1.00	6.00	2.00	1.00
..................................................................................................................TGACTAGATCCACACTCATTG...................................................	21	1	9.00	0.00	6.00	1.00	2.00
..................................................................................................................TGACTAGATCCACACTCATTATA.................................................	23	1	9.00	6.00	0.00	0.00	3.00
..................................................................................................................TGACTAGATCCACACTCG......................................................	18	1	9.00	0.00	7.00	2.00	0.00
..................................................................................................................TGACTAGATCCACACTCATTAAG.................................................	23	1	8.00	2.00	4.00	0.00	2.00
..................................................................................................................TGACTAGATCCATACTCATTA...................................................	21	1	8.00	3.00	4.00	0.00	1.00
..................................................................................................................TGACTAGATCCACGCTCATTAA..................................................	22	1	8.00	0.00	3.00	0.00	5.00
..................................................................................................................TGGCTAGATCCACACTCATTA...................................................	21	1	8.00	4.00	3.00	1.00	0.00
..................................................................................................................TGACTAGATCCACACTCAG.....................................................	19	1	8.00	0.00	7.00	1.00	0.00
..................................................................................................................TGGCTAGATCCACACTCATTAA..................................................	22	1	8.00	0.00	5.00	0.00	3.00
..................................................................................................................TGACTAGATCCACACTCATTCA..................................................	22	1	8.00	5.00	2.00	0.00	1.00
...................................................................GTGGGTGGGGGTCCAGTGTTTCA................................................................................................	23	1	8.00	8.00	0.00	0.00	0.00
..................................................................................................................TGACTACATCCACACTCATT....................................................	20	1	8.00	0.00	3.00	1.00	4.00
...................................................................................................................GACTAGATCCACACTCATT....................................................	19	1	8.00	4.00	3.00	1.00	0.00
..................................................................................................................TGACTAGATACACACTCATT....................................................	20	1	7.00	4.00	2.00	0.00	1.00
..................................................................................................................TGACTAGATCCGCACTCATTAA..................................................	22	1	7.00	4.00	1.00	1.00	1.00
...................................................................GTGGGTGGGGGTCCAGTGTTTCAC...............................................................................................	24	1	7.00	7.00	0.00	0.00	0.00
..................................................................................................................TGACTAGACCCACACTCATT....................................................	20	1	7.00	0.00	4.00	3.00	0.00
..................................................................................................................TTACTAGATCCACACTCATTAA..................................................	22	1	7.00	0.00	3.00	0.00	4.00
..................................................................................................................TGACTAGAGCCACACTCATT....................................................	20	1	7.00	2.00	4.00	1.00	0.00
..................................................................................................................TGACTAGGTCCACACTCATT....................................................	20	1	6.00	1.00	4.00	0.00	1.00
..................................................................................................................TGACTAGATCCACACTCGTT....................................................	20	1	6.00	4.00	0.00	2.00	0.00
..................................................................................................................TGAATAGATCCACACTCATT....................................................	20	1	6.00	4.00	1.00	1.00	0.00
..................................................................................................................TGACTAGATCCTCACTCATTAA..................................................	22	1	6.00	6.00	0.00	0.00	0.00
..................................................................................................................TGACTAGATCCACACCCATTA...................................................	21	1	6.00	1.00	4.00	0.00	1.00
..................................................................................................................TGACTAGATCCACACTCATTAAAAC...............................................	25	1	5.00	0.00	0.00	0.00	5.00
..................................................................................................................TGACTAGATCCACACTCATTGA..................................................	22	1	5.00	4.00	0.00	0.00	1.00
..................................................................................................................TGACTAGATCCACTCTCATT....................................................	20	1	5.00	2.00	3.00	0.00	0.00
.................................................................................................................CTGACTAGATCCACACTC.......................................................	18	1	5.00	0.00	3.00	2.00	0.00
..................................................................................................................TGACTAGAACCACACTCATT....................................................	20	1	5.00	1.00	4.00	0.00	0.00
..................................................................................................................TGACTGGATCCACACTCATTAA..................................................	22	1	5.00	0.00	1.00	1.00	3.00
..................................................................................................................TGACTAGAGCCACACTCATTAA..................................................	22	1	5.00	2.00	1.00	0.00	2.00
..................................................................................................................TGACTAGATCCACACTCGT.....................................................	19	1	5.00	1.00	3.00	1.00	0.00
..................................................................................................................TGACTATATCCACACTCAT.....................................................	19	1	5.00	0.00	3.00	2.00	0.00
..................................................................................................................TGGCTAGATCCACACTCAT.....................................................	19	1	5.00	1.00	1.00	1.00	2.00
..................................................................................................................GGACTAGATCCACACTCATT....................................................	20	1	5.00	4.00	1.00	0.00	0.00
..................................................................................................................AGACTAGATCCACACTCATT....................................................	20	1	5.00	1.00	3.00	1.00	0.00
.................................................................................................................CTGACTAGATCCACACTCATT....................................................	21	1	5.00	1.00	2.00	2.00	0.00
..................................................................................................................TGACTAGATCCACACCCATTAA..................................................	22	1	5.00	0.00	4.00	0.00	1.00
..................................................................................................................TTACTAGATCCACACTCATT....................................................	20	1	5.00	0.00	2.00	1.00	2.00
..................................................................................................................AGACTAGATCCACACTCATTAA..................................................	22	1	5.00	4.00	1.00	0.00	0.00
..................................................................................................................TGACTAGATCTACACTCATT....................................................	20	1	5.00	2.00	2.00	0.00	1.00
..................................................................................................................TGACTAGATCCACCCTCATTAA..................................................	22	1	5.00	3.00	1.00	0.00	1.00
..................................................................................................................TGACTAGATCCACACTCATTAAAAAA..............................................	26	1	4.00	0.00	2.00	0.00	2.00
..................................................................................................................TGACTAGCTCCACACTCATT....................................................	20	1	4.00	0.00	2.00	1.00	1.00
..................................................................................................................TGACCAGATCCACACTCATT....................................................	20	1	4.00	2.00	0.00	2.00	0.00
..................................................................................................................TGACTAGATCCACAATCATTAAA.................................................	23	1	4.00	3.00	0.00	0.00	1.00
..................................................................................................................TGACTGGATCCACACTCATT....................................................	20	1	4.00	1.00	2.00	1.00	0.00
..................................................................AGTGGGTGGGGGTCCAGTGGTTCACA..............................................................................................	26	1	4.00	4.00	0.00	0.00	0.00
..................................................................................................................TGACTAGACCCACACTCATTAA..................................................	22	1	4.00	2.00	0.00	0.00	2.00
..................................................................................................................TGCCTAGATCCACACTCATTAAA.................................................	23	1	4.00	3.00	0.00	0.00	1.00
..................................................................................................................TGTCTAGATCCACACTCATTAA..................................................	22	1	4.00	3.00	1.00	0.00	0.00
...................................................................GTGGGTGGGGGTCCAGTGTTTCACC..............................................................................................	25	1	4.00	4.00	0.00	0.00	0.00
..................................................................................................................TGACTAGATCCACACTTATT....................................................	20	1	4.00	0.00	1.00	2.00	1.00
..................................................................................................................TGACTAGATCCACGCTCATTA...................................................	21	1	4.00	1.00	3.00	0.00	0.00
..................................................................................................................CGACTAGATCCACACTCATTA...................................................	21	1	4.00	2.00	2.00	0.00	0.00
..................................................................................................................TGACTAAATCCACACTCATTAAA.................................................	23	1	4.00	2.00	0.00	0.00	2.00
..................................................................................................................TGACTAGATCAACACTCATT....................................................	20	1	4.00	2.00	1.00	0.00	1.00
..................................................................................................................TGACTAGACCCACACTCATTA...................................................	21	1	4.00	1.00	2.00	0.00	1.00

droSec1

A------------CTGG--------AGCT------GGAATTGG-AATTCA---TACTGCTGTTTTTAGTGGGTGGGGGTCCAGTGTTTCACATT-GATTTTC--TTAGTATTTGTGACTAGATCCACACTCATTAATAACGGTAGTTCAATCATCAA--------------GCACGT---------	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
..................................................................................................................TGACTAGATCCACACTCATT....................................................	20	1	7439.00	656.00	1744.00	5039.00
..................................................................................................................TGACTAGATCCACACTCAT.....................................................	19	1	5220.00	3.00	305.00	4912.00
..................................................................................................................TGACTAGATCCACACTCATTA...................................................	21	1	3150.00	455.00	1757.00	938.00
..................................................................................................................TGACTAGATCCACACTCATTAA..................................................	22	1	2105.00	184.00	1430.00	491.00
..................................................................AGTGGGTGGGGGTCCAGTGTTTCACA..............................................................................................	26	1	1161.00	100.00	969.00	92.00
...................................................................GTGGGTGGGGGTCCAGTGTTTCACA..............................................................................................	25	1	437.00	32.00	357.00	48.00
..................................................................................................................TGACTAGATCCACACTCATTAAA.................................................	23	1	403.00	27.00	278.00	98.00
..................................................................................................................TGACTAGATCCACACTCATTAC..................................................	22	1	130.00	14.00	72.00	44.00
..................................................................AGTGGGTGGGGGTCCAGTGTTTCA................................................................................................	24	1	79.00	11.00	54.00	14.00
..................................................................AGTGGGTGGGGGTCCAGTGTTTCAC...............................................................................................	25	1	76.00	7.00	64.00	5.00
..................................................................................................................TGACTAGATCCACACTCATTT...................................................	21	1	65.00	15.00	5.00	45.00
...................................................................GTGGGTGGGGGTCCAGTGTTTCA................................................................................................	23	1	64.00	10.00	44.00	10.00
..................................................................................................................TGACTAGATCCACACTCATTAT..................................................	22	1	50.00	9.00	12.00	29.00
...................................................................GTGGGTGGGGGTCCAGTGTTTCAC...............................................................................................	24	1	40.00	5.00	31.00	4.00
..................................................................................................................TGACTAGATCCACACTCATTAAAA................................................	24	1	29.00	0.00	23.00	6.00
..................................................................................................................TGACTAGATCCACACTCATTAAT.................................................	23	1	22.00	0.00	8.00	14.00
..................................................................................................................TGACTAGATCCACACTCA......................................................	18	1	19.00	1.00	5.00	13.00
..................................................................................................................TGACTAGATCCACACTCATA....................................................	20	1	17.00	1.00	1.00	15.00
..................................................................................................................TGACTAGATCCACACTCATTACA.................................................	23	1	17.00	0.00	13.00	4.00
..................................................................................................................TTACTAGATCCACACTCATT....................................................	20	1	15.00	1.00	3.00	11.00
..................................................................................................................TGACTAGATCCACACTCAAT....................................................	20	1	14.00	5.00	0.00	9.00
..................................................................................................................CGACTAGATCCACACTCATT....................................................	20	1	14.00	2.00	2.00	10.00
..................................................................AGTGGGTGGGGGTCCAGTGTTTC.................................................................................................	23	1	14.00	4.00	9.00	1.00
..................................................................................................................TGACTAAATCCACACTCAT.....................................................	19	1	12.00	0.00	0.00	12.00
..................................................................................................................TGACTAGATCCACACTCAA.....................................................	19	1	11.00	0.00	1.00	10.00
..................................................................................................................TGGCTAGATCCACACTCATT....................................................	20	1	11.00	1.00	0.00	10.00
..................................................................................................................TGACTAAATCCACACTCATT....................................................	20	1	11.00	0.00	1.00	10.00
..................................................................................................................TGACTAGATCCACACTCACT....................................................	20	1	11.00	8.00	1.00	2.00
..................................................................................................................TGACTAGATCCACGCTCATT....................................................	20	1	10.00	1.00	3.00	6.00
...................................................................GTGGGTGGGGGTCCAGTGTTTC.................................................................................................	22	1	10.00	2.00	8.00	0.00
..................................................................................................................TCACTAGATCCACACTCAT.....................................................	19	1	9.00	0.00	0.00	9.00
..................................................................................................................TGACTAGATCCACACTCATC....................................................	20	1	9.00	0.00	4.00	5.00
..................................................................AGTGGGTGGGGGTCCAGTGTT...................................................................................................	21	1	9.00	5.00	2.00	2.00
..................................................................................................................TGACTAGATCCACATTCATT....................................................	20	1	9.00	2.00	4.00	3.00
..................................................................................................................TGAATAGATCCACACTCAT.....................................................	19	1	9.00	0.00	0.00	9.00
..................................................................................................................TGACTATATCCACACTCATT....................................................	20	1	9.00	0.00	1.00	8.00
..................................................................................................................TGACTAGATCCACACTCATTAAG.................................................	23	1	8.00	1.00	4.00	3.00
..................................................................AGTGGGTGGGGGTCCAGTGTTT..................................................................................................	22	1	8.00	2.00	6.00	0.00
..................................................................................................................TGACTAGATCCACACTCAATA...................................................	21	1	8.00	4.00	1.00	3.00
..................................................................................................................TGACTAGATCAACACTCATT....................................................	20	1	8.00	0.00	1.00	7.00
..................................................................................................................TGACTAGATTCACACTCATT....................................................	20	1	8.00	0.00	5.00	3.00
..................................................................................................................TGACTAGATCCATACTCATT....................................................	20	1	8.00	0.00	6.00	2.00
..................................................................................................................TGACTAGATCxxCACTCATT....................................................	18	1	8.00	1.00	4.00	3.00
..................................................................................................................TGACTAGGTCCACACTCATT....................................................	20	1	7.00	0.00	4.00	3.00
..................................................................................................................TGACTGGATCCACACTCATT....................................................	20	1	7.00	1.00	0.00	6.00
..................................................................................................................TGACTAGAACCACACTCATT....................................................	20	1	7.00	0.00	2.00	5.00
..................................................................................................................TGACTAGATCCACACTTATT....................................................	20	1	7.00	0.00	3.00	4.00
.........................................................................GGGGGTCCAGTGTTTCAC...............................................................................................	18	1	7.00	0.00	6.00	1.00
..................................................................................................................TGAATAGATCCACACTCATT....................................................	20	1	7.00	1.00	0.00	6.00
..................................................................................................................TGACTAGATCxxCACTCATTA...................................................	19	1	7.00	0.00	7.00	0.00
..................................................................................................................TGACTAGATCCACACTCACTA...................................................	21	1	7.00	4.00	1.00	2.00
..................................................................................................................TGGCTAGATCCACACTCAT.....................................................	19	1	7.00	0.00	1.00	6.00
..................................................................................................................TGACTAGATCCACACTCATTC...................................................	21	1	7.00	3.00	2.00	2.00
...................................................................................................................GACTAGATCCACACTCATT....................................................	19	1	7.00	0.00	0.00	7.00
..................................................................................................................TGACTAGATCTACACTCATT....................................................	20	1	7.00	1.00	5.00	1.00
..................................................................................................................TGACTAGATCCGCACTCATT....................................................	20	1	6.00	0.00	3.00	3.00
..................................................................................................................TGACTAGATACACACTCATT....................................................	20	1	6.00	0.00	1.00	5.00
..................................................................................................................TGACTAGATCAACACTCAT.....................................................	19	1	6.00	0.00	0.00	6.00
..................................................................................................................TGACTACATCCACACTCAT.....................................................	19	1	6.00	0.00	0.00	6.00
..................................................................................................................TGACTAGATACACACTCAT.....................................................	19	1	6.00	0.00	0.00	6.00
..................................................................................................................TGACTAGATCCACACTCATTAG..................................................	22	1	6.00	0.00	4.00	2.00
..................................................................................................................TGACTATATCCACACTCAT.....................................................	19	1	6.00	0.00	0.00	6.00
..................................................................................................................TGACTAGATCCACACTCATTTT..................................................	22	1	6.00	0.00	0.00	6.00
..................................................................................................................TAACTAGATCCACACTCATT....................................................	20	1	6.00	1.00	1.00	4.00
..................................................................................................................TGATTAGATCCACACTCATT....................................................	20	1	6.00	0.00	4.00	2.00
..................................................................AGTGGGTGGGGGTCCAGTGTTTCACAA.............................................................................................	27	1	6.00	0.00	6.00	0.00
..................................................................................................................TGACTAGATCCACACTTAT.....................................................	19	1	6.00	0.00	2.00	4.00
..................................................................................................................TGACTAGATCCTCACTCATT....................................................	20	1	5.00	0.00	3.00	2.00
..................................................................................................................TGACTAGATCCATACTCATTA...................................................	21	1	5.00	0.00	5.00	0.00
..................................................................................................................CGACTAGATCCACACTCAT.....................................................	19	1	5.00	0.00	0.00	5.00
..................................................................AGTGGGCGGGGGTCCAGTGTTTCACA..............................................................................................	26	1	5.00	0.00	5.00	0.00
..................................................................................................................TGACTxxATCCACACTCATTA...................................................	19	1	5.00	0.00	3.00	2.00
..................................................................................................................TGACTAGATCCACACTCATTAAAAA...............................................	25	1	5.00	0.00	5.00	0.00
..................................................................................................................TGACTAGATCCACACTCAC.....................................................	19	1	5.00	0.00	1.00	4.00
..................................................................................................................AGACTAGATCCACACTCATT....................................................	20	1	5.00	1.00	1.00	3.00
..................................................................................................................TGACTAGATCCACACTCATTAAC.................................................	23	1	5.00	0.00	4.00	1.00
..................................................................................................................TGACTAGATCCACACCCAT.....................................................	19	1	5.00	0.00	0.00	5.00
..................................................................................................................TGACAAGATCCACACTCATT....................................................	20	1	5.00	0.00	2.00	3.00
..................................................................................................................TGACTAGATCCACATTCATTA...................................................	21	1	5.00	0.00	5.00	0.00
...................................................................................................................GACTAGATCCACACTCATTA...................................................	20	1	5.00	0.00	1.00	4.00
..................................................................................................................TGACCAGATCCACACTCATT....................................................	20	1	4.00	0.00	1.00	3.00
..................................................................................................................TGACCAGATCCACACTCATTA...................................................	21	1	4.00	1.00	2.00	1.00
..................................................................................................................TGACTAGATCCGCACTCATTA...................................................	21	1	4.00	0.00	1.00	3.00
..................................................................................................................TGACAAGATCCACACTCAT.....................................................	19	1	4.00	0.00	0.00	4.00
..................................................................................................................TGACTGGATCCACACTCATTAA..................................................	22	1	4.00	0.00	4.00	0.00
..................................................................................................................TGACTGGATCCACACTCAT.....................................................	19	1	4.00	0.00	1.00	3.00
..................................................................................................................TGACTAGATCCACGCTCATTA...................................................	21	1	4.00	0.00	3.00	1.00
..................................................................................................................TGACTAGATCCACAATCATT....................................................	20	1	4.00	0.00	1.00	3.00
..................................................................AGTGGGTGGGGGTCCAGTGTTTTACA..............................................................................................	26	1	4.00	0.00	4.00	0.00
..................................................................................................................TGACTAGATCCACCCTCATT....................................................	20	1	4.00	1.00	1.00	2.00
............................................................................................TT-GATTTTC--TTAGTATTTG........................................................................	19	1	4.00	0.00	4.00	0.00
..................................................................AGTGGGTGGGGTTCCAGTGTTTCACA..............................................................................................	26	1	4.00	0.00	3.00	1.00
..................................................................................................................TGACTAGATCCACACCCATT....................................................	20	1	4.00	2.00	1.00	1.00
..................................................................................................................TGACTACATCCACACTCATT....................................................	20	1	4.00	2.00	1.00	1.00
..................................................................ACTGGGTGGGGGTCCAGTGTTTCACA..............................................................................................	26	1	4.00	0.00	4.00	0.00
..................................................................................................................GGACTAGATCCACACTCATT....................................................	20	1	4.00	1.00	0.00	3.00
..................................................................................................................TGACTAGGTCCACACTCATTAA..................................................	22	1	4.00	0.00	3.00	1.00
..................................................................................................................TGACTAGATCCATACTCATTAA..................................................	22	1	4.00	0.00	4.00	0.00
..................................................................................................................TGACTAGATCCACACCCATTAA..................................................	22	1	4.00	0.00	3.00	1.00
..................................................................AGTGGGTGGGGGTCTAGTGTTTCACA..............................................................................................	26	1	4.00	0.00	4.00	0.00
...................................................................GTGAGTGAGGGTCCAGTGTTTCACA..............................................................................................	25	1	4.00	0.00	0.00	4.00

droYak2

A------------CTGG--------AACT------AGAATTGA-AATTCA---TACTACTGTTTTTAGTGGGTGAGGGTCCAGTGCTTCACATT-GATTTTC--TTAGTATTTGTGACTAGATCCACACTCATTAATAACGGTAGTTCAATCATCAA--------------GCACGT---------	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
..................................................................................................................TGACTAGATCCACACTCATT....................................................	20	1	6776.00	1125.00	1253.00	331.00	1802.00	2265.00
..................................................................................................................TGACTAGATCCACACTCATTA...................................................	21	1	2875.00	1421.00	305.00	141.00	414.00	594.00
..................................................................................................................TGACTAGATCCACACTCAT.....................................................	19	1	1966.00	114.00	646.00	0.00	921.00	285.00
..................................................................................................................TGACTAGATCCACACTCATTAA..................................................	22	1	1579.00	736.00	86.00	56.00	151.00	550.00
..................................................................AGTGGGTGAGGGTCCAGTGCTTCACA..............................................................................................	26	1	604.00	537.00	7.00	48.00	12.00	0.00
..................................................................................................................TGACTAGATCCACACTCATTAAA.................................................	23	1	318.00	195.00	12.00	13.00	13.00	85.00
...................................................................GTGGGTGAGGGTCCAGTGCTTCACA..............................................................................................	25	1	277.00	244.00	2.00	29.00	2.00	0.00
..................................................................................................................TGACTAGATCCACACTCATTAC..................................................	22	1	145.00	40.00	7.00	9.00	8.00	81.00
..................................................................................................................TGACTAGATCCACACTCATTT...................................................	21	1	120.00	17.00	26.00	2.00	35.00	40.00
...................................................................GTGGGTGAGGGTCCAGTGCTTCAC...............................................................................................	24	1	85.00	79.00	0.00	4.00	2.00	0.00
..................................................................................................................TGACTAGATCCACACTCATTAT..................................................	22	1	76.00	37.00	9.00	4.00	14.00	12.00
..................................................................AGTGGGTGAGGGTCCAGTGCTTCAC...............................................................................................	25	1	72.00	69.00	0.00	3.00	0.00	0.00
..................................................................................................................TGACTAGATCCCCACTCATTAA..................................................	22	1	65.00	53.00	2.00	0.00	5.00	5.00
..................................................................................................................TGACTAGATCCACACTCCTTA...................................................	21	1	63.00	39.00	7.00	0.00	13.00	4.00
..................................................................................................................TGACTAGATCCACACTCATC....................................................	20	1	57.00	2.00	2.00	1.00	3.00	49.00
..................................................................................................................TGACTAGATCCACACTCCTT....................................................	20	1	51.00	16.00	14.00	0.00	21.00	0.00
..................................................................................................................TGACTAGATCCACACTCA......................................................	18	1	35.00	2.00	2.00	0.00	4.00	27.00
..................................................................................................................TGACTAGATCCCCACTCATT....................................................	20	1	31.00	1.00	4.00	0.00	14.00	12.00
..................................................................................................................TGACTAGATCCACACTCGTT....................................................	20	1	28.00	7.00	6.00	0.00	15.00	0.00
..................................................................................................................TGACTAGATCCACCCTCATTA...................................................	21	1	27.00	14.00	1.00	0.00	12.00	0.00
...................................................................GTGGGTGAGGGTCCAGTGCTTCA................................................................................................	23	1	23.00	15.00	1.00	5.00	2.00	0.00
..................................................................................................................TGACTAGATCCACACTCATTAAAA................................................	24	1	20.00	11.00	0.00	0.00	0.00	9.00
..................................................................AGTGGGTGAGGGTCCAGTGCTTCA................................................................................................	24	1	19.00	12.00	1.00	4.00	2.00	0.00
..................................................................................................................TGACTAGATCCACACTCCT.....................................................	19	1	19.00	1.00	7.00	0.00	11.00	0.00
...................................................................GTGGGTGAGGGTCCAGTGCTT..................................................................................................	21	1	18.00	1.00	1.00	10.00	6.00	0.00
..................................................................................................................TGACTAGATCCACACTCATTACA.................................................	23	1	17.00	14.00	2.00	0.00	1.00	0.00
..................................................................................................................TGACTAGATCCACCCTCATT....................................................	20	1	16.00	3.00	2.00	1.00	10.00	0.00
..................................................................................................................TGACTAGATCCACACTCGT.....................................................	19	1	14.00	1.00	4.00	0.00	9.00	0.00
..................................................................................................................TGACTAGAGCCACACTCATT....................................................	20	1	13.00	1.00	1.00	0.00	10.00	1.00
..................................................................................................................TGACTAGATCCACACTCATTAAT.................................................	23	1	12.00	5.00	0.00	0.00	1.00	6.00
..................................................................................................................TGACTAGATCCCCACTCATTA...................................................	21	1	12.00	3.00	1.00	0.00	3.00	5.00
..................................................................................................................TGACTAGATCCATACTCATT....................................................	20	1	12.00	1.00	3.00	0.00	7.00	1.00
..................................................................................................................TGGCTAGATCCACACTCATT....................................................	20	1	11.00	1.00	2.00	0.00	5.00	3.00
..................................................................................................................TGACTAGATCCACACTCATTC...................................................	21	1	11.00	0.00	2.00	0.00	8.00	1.00
..................................................................................................................CGACTAGATCCACACTCATT....................................................	20	1	11.00	3.00	4.00	0.00	3.00	1.00
..................................................................................................................TGACTATATCCACACTCATT....................................................	20	1	11.00	2.00	5.00	0.00	3.00	1.00
..................................................................................................................TGACTAGATACACACTCATT....................................................	20	1	10.00	4.00	1.00	0.00	2.00	3.00
..................................................................................................................TGACTAGCTCCACACTCATTA...................................................	21	1	10.00	7.00	0.00	0.00	3.00	0.00
..................................................................................................................TGACTACATCCACACTCATT....................................................	20	1	10.00	0.00	1.00	1.00	8.00	0.00
..................................................................................................................TGACTAGATCCACACTCATTAAC.................................................	23	1	10.00	1.00	0.00	1.00	0.00	8.00
..................................................................................................................TGACTAGATCAACACTCATT....................................................	20	1	9.00	2.00	0.00	1.00	6.00	0.00
..................................................................................................................TGACTAGATCCACACCCATT....................................................	20	1	9.00	2.00	4.00	0.00	1.00	2.00
..................................................................................................................TGACTAGATCCACACTCATTTT..................................................	22	1	9.00	0.00	0.00	0.00	4.00	5.00
..................................................................................................................GGACTAGATCCACACTCATT....................................................	20	1	9.00	5.00	1.00	0.00	3.00	0.00
..................................................................................................................TAACTAGATCCACACTCATT....................................................	20	1	9.00	0.00	2.00	0.00	5.00	2.00
..................................................................................................................TGACTAGATCCACACTCAC.....................................................	19	1	9.00	0.00	0.00	0.00	5.00	4.00
..................................................................................................................TGACTAGGTCCACACTCATT....................................................	20	1	8.00	3.00	1.00	0.00	1.00	3.00
..................................................................................................................TGACTAGATCCCCACTCAT.....................................................	19	1	8.00	0.00	6.00	0.00	2.00	0.00
..................................................................................................................AGACTAGATCCACACTCAT.....................................................	19	1	8.00	0.00	3.00	0.00	5.00	0.00
..................................................................AGTGGGTGAGGGTCCAGTGC....................................................................................................	20	1	8.00	5.00	0.00	2.00	1.00	0.00
..................................................................................................................TGACTAGATCCACACTCATG....................................................	20	1	8.00	1.00	0.00	0.00	4.00	3.00
..................................................................................................................TGACTAGATCCCCACTCATTAAA.................................................	23	1	8.00	6.00	0.00	0.00	1.00	1.00
...................................................................GTGGGTGAGGGTCCAGTGCT...................................................................................................	20	1	8.00	0.00	2.00	6.00	0.00	0.00
..................................................................................................................TGACTGGATCCACACTCATT....................................................	20	1	8.00	1.00	1.00	0.00	6.00	0.00
..................................................................................................................TGGCTAGATCCACACTCATTA...................................................	21	1	8.00	4.00	0.00	1.00	1.00	2.00
............................................................................................TT-GATTTTC--TTAGTATTTG........................................................................	19	1	8.00	8.00	0.00	0.00	0.00	0.00
..................................................................................................................TGACTAGGTCCACACTCAT.....................................................	19	1	8.00	0.00	0.00	0.00	8.00	0.00
..................................................................................................................TGACTAGATCCACACTCACT....................................................	20	1	8.00	1.00	3.00	0.00	2.00	2.00
..................................................................................................................TGACTAGAGCCACACTCATTA...................................................	21	1	8.00	3.00	2.00	0.00	3.00	0.00
..................................................................AGTGGGTGAGGGTCCAGTGCT...................................................................................................	21	1	8.00	1.00	1.00	6.00	0.00	0.00
..................................................................................................................TGACTAGATCCGCACTCAT.....................................................	19	1	8.00	0.00	4.00	0.00	3.00	1.00
..................................................................................................................TGACTAGATCCACACTCAGT....................................................	20	1	7.00	1.00	2.00	0.00	4.00	0.00
..................................................................................................................TGACTAGATCAACACTCAT.....................................................	19	1	7.00	0.00	1.00	0.00	6.00	0.00
..................................................................................................................TGACTAGAGCCACACTCAT.....................................................	19	1	7.00	0.00	1.00	0.00	6.00	0.00
..................................................................................................................TGACTAGATCCACGCTCATTAA..................................................	22	1	7.00	5.00	0.00	0.00	0.00	2.00
...................................................................GTGGGTGAGGGTCCAGTGCTTCACC..............................................................................................	25	1	7.00	7.00	0.00	0.00	0.00	0.00
..................................................................AGTGGGTGAGGGTCCAGTGCTTC.................................................................................................	23	1	7.00	3.00	0.00	3.00	1.00	0.00
..................................................................................................................TGACTAAATCCACACTCATT....................................................	20	1	7.00	1.00	3.00	0.00	3.00	0.00
..................................................................................................................TGACTAGATCCACACTC.......................................................	17	1	6.00	0.00	0.00	0.00	6.00	0.00
..................................................................................................................TGACCAGATCCACACTCATT....................................................	20	1	6.00	0.00	2.00	0.00	4.00	0.00
...................................................................GTGGGTGAGGGTCCAGTGCTTC.................................................................................................	22	1	6.00	2.00	0.00	4.00	0.00	0.00
..................................................................AGTGGGTGAGGGTCCAGTGCTT..................................................................................................	22	1	6.00	1.00	1.00	3.00	1.00	0.00
..................................................................................................................TGACTAGATCCACACTCATTCA..................................................	22	1	6.00	2.00	0.00	0.00	3.00	1.00
..................................................................................................................TGACTAGATCCACCCTCAT.....................................................	19	1	6.00	0.00	1.00	0.00	5.00	0.00
..................................................................................................................TTACTAGATCCACACTCATTA...................................................	21	1	6.00	0.00	2.00	1.00	3.00	0.00
..................................................................................................................AGACTAGATCCACACTCATT....................................................	20	1	6.00	2.00	0.00	0.00	4.00	0.00
..................................................................................................................TTACTAGATCCACACTCATT....................................................	20	1	6.00	0.00	0.00	0.00	5.00	1.00
...................................................................................................................GACTAGATCCACACTCATT....................................................	19	1	6.00	2.00	2.00	0.00	2.00	0.00
..................................................................................................................TGACTAGATCCGCACTCATT....................................................	20	1	5.00	0.00	2.00	0.00	3.00	0.00
...................................................................GTGGGTGAGGGTCCAGTGC....................................................................................................	19	1	5.00	1.00	0.00	3.00	1.00	0.00
..................................................................................................................TGACGAGATCCACACTCATT....................................................	20	1	5.00	1.00	1.00	1.00	2.00	0.00
..................................................................................................................TGACTAGATCCACTCTCATT....................................................	20	1	5.00	0.00	0.00	0.00	5.00	0.00
..................................................................................................................TGACTAGATCCACACTCATTAAG.................................................	23	1	5.00	3.00	2.00	0.00	0.00	0.00
..................................................................................................................TGACTAGATCCACACTAATT....................................................	20	1	5.00	1.00	2.00	0.00	1.00	1.00
..................................................................................................................TGACTAGATCCACACTCATTAG..................................................	22	1	5.00	2.00	1.00	1.00	1.00	0.00
..................................................................................................................TGACTAGATCCACAATCATT....................................................	20	1	5.00	1.00	1.00	0.00	3.00	0.00
..................................................................................................................TGACTAGATCCACACTCCTTAA..................................................	22	1	5.00	4.00	1.00	0.00	0.00	0.00
..................................................................................................................TGAATAGATCCACACTCATT....................................................	20	1	5.00	0.00	2.00	0.00	3.00	0.00
..................................................................................................................TGACTAGATCCACGCTCATT....................................................	20	1	5.00	2.00	1.00	0.00	2.00	0.00
..................................................................................................................TGACTAGATCCACACTCATTTA..................................................	22	1	5.00	4.00	0.00	0.00	1.00	0.00
..................................................................................................................TGACTAGGTCCACACTCATTA...................................................	21	1	5.00	2.00	1.00	0.00	2.00	0.00
..................................................................................................................GGACTAGATCCACACTCATTA...................................................	21	1	5.00	4.00	1.00	0.00	0.00	0.00
..................................................................................................................TGGCTAGATCCACACTCAGT....................................................	20	1	5.00	0.00	1.00	0.00	4.00	0.00
..................................................................................................................TGACTAGATCCACACTCATTG...................................................	21	1	5.00	0.00	0.00	0.00	2.00	3.00
..................................................................................................................TGACTAGATCCTCACTCATT....................................................	20	1	4.00	1.00	0.00	0.00	3.00	0.00
..................................................................................................................TGACTAGATCCACACTCTT.....................................................	19	1	4.00	0.00	1.00	0.00	3.00	0.00
..................................................................................................................TGACTAGCTCCACACTCATT....................................................	20	1	4.00	0.00	1.00	1.00	2.00	0.00
..................................................................................................................TGACTCGATCCACACTCATT....................................................	20	1	4.00	0.00	1.00	0.00	3.00	0.00
..................................................................................................................TGACTAGATCCATACTCATTA...................................................	21	1	4.00	3.00	0.00	0.00	1.00	0.00
..................................................................................................................TGACTAGATCCACACTCATTACC.................................................	23	1	4.00	1.00	0.00	0.00	0.00	3.00
..................................................................................................................TGACTAGATCCGCACTCATTA...................................................	21	1	4.00	2.00	0.00	0.00	2.00	0.00

droEre2

A------------CTGG--------------------AATTGG-AATTCA---TACTACTGTTTTTAGTGGGTGGGGGTCCAGTGTTTCACATT-GATTTTC--TTAGTATTTGTGACTAGATCCACACTCATTAATAACGGTAGTTCAATCATCAA--------------GCACGT---------	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
..................................................................................................................TGACTAGATCCACACTCATT....................................................	20	1	17122.00	798.00	1687.00	0.00	14637.00
..................................................................................................................TGACTAGATCCACACTCAT.....................................................	19	1	6390.00	55.00	276.00	0.00	6059.00
..................................................................................................................TGACTAGATCCACACTCATTA...................................................	21	1	3729.00	838.00	609.00	0.00	2282.00
..................................................................................................................TGACTAGATCCACACTCATTAA..................................................	22	1	1458.00	365.00	165.00	0.00	928.00
..................................................................AGTGGGTGGGGGTCCAGTGTTTCACA..............................................................................................	26	1	537.00	66.00	15.00	0.00	456.00
..................................................................................................................TGACTAGATCCACACTCATTT...................................................	21	1	299.00	8.00	37.00	0.00	254.00
..................................................................................................................TGACTAGATCCACACTCATTAAA.................................................	23	1	271.00	63.00	32.00	0.00	176.00
...................................................................GTGGGTGGGGGTCCAGTGTTTCACA..............................................................................................	25	1	196.00	45.00	5.00	0.00	146.00
..................................................................................................................TGACTAGATCAACACTCATT....................................................	20	1	140.00	2.00	2.00	0.00	136.00
..................................................................................................................TTACTAGATCCACACTCATT....................................................	20	1	138.00	2.00	1.00	0.00	135.00
..................................................................................................................TGACTATATCCACACTCATT....................................................	20	1	124.00	8.00	2.00	0.00	114.00
..................................................................................................................TGACTAGATCCACACTCATTAT..................................................	22	1	107.00	16.00	5.00	0.00	86.00
..................................................................................................................TGACTAGATCCACACTAATT....................................................	20	1	106.00	0.00	2.00	0.00	104.00
..................................................................................................................TGAATAGATCCACACTCATT....................................................	20	1	67.00	1.00	3.00	0.00	63.00
..................................................................................................................TGACTAGATACACACTCATT....................................................	20	1	64.00	3.00	0.00	0.00	61.00
..................................................................................................................TGACTAGATCCACACTCATTAC..................................................	22	1	63.00	26.00	8.00	0.00	29.00
..................................................................................................................TGACTAGATCAACACTCAT.....................................................	19	1	54.00	0.00	0.00	0.00	54.00
..................................................................................................................TGACTAGATCCACACTAAT.....................................................	19	1	52.00	0.00	0.00	0.00	52.00
..................................................................................................................TTACTAGATCCACACTCAT.....................................................	19	1	51.00	0.00	0.00	0.00	51.00
..................................................................................................................TGACTATATCCACACTCAT.....................................................	19	1	44.00	0.00	0.00	0.00	44.00
..................................................................................................................TGACTAGATCCACACTCATTAAT.................................................	23	1	35.00	3.00	4.00	0.00	28.00
..................................................................................................................TGACTAGATCCACACTCCTTA...................................................	21	1	35.00	21.00	9.00	0.00	5.00
..................................................................................................................CGACTAGATCCACACTCATT....................................................	20	1	34.00	8.00	4.00	0.00	22.00
..................................................................AGTGGGTGGGGGTCCAGTGTTTCA................................................................................................	24	1	34.00	7.00	1.00	0.00	26.00
..................................................................................................................TGGCTAGATCCACACTCATT....................................................	20	1	33.00	2.00	3.00	0.00	28.00
..................................................................................................................TGACTAGATCCAAACTCATT....................................................	20	1	33.00	0.00	1.00	0.00	32.00
..................................................................................................................TGACTAGATCCACACTCCTT....................................................	20	1	32.00	10.00	13.00	0.00	9.00
..................................................................................................................TTACTAGATCCACACTCATTA...................................................	21	1	31.00	7.00	0.00	0.00	24.00
..................................................................................................................TGACTAGATCCACACTCATTTT..................................................	22	1	29.00	0.00	4.00	0.00	25.00
..................................................................................................................TGACTAGATCCACAATCATT....................................................	20	1	29.00	2.00	1.00	0.00	26.00
..................................................................................................................TGAATAGATCCACACTCAT.....................................................	19	1	28.00	1.00	0.00	0.00	27.00
..................................................................................................................TGACTACATCCACACTCATT....................................................	20	1	28.00	9.00	4.00	0.00	15.00
..................................................................................................................TGACTAGATACACACTCAT.....................................................	19	1	24.00	0.00	0.00	0.00	24.00
..................................................................................................................TGACTAGATCCACACTCA......................................................	18	1	23.00	0.00	1.00	0.00	22.00
..................................................................................................................TGACTAGATCCACACTAATTA...................................................	21	1	23.00	0.00	0.00	0.00	23.00
..................................................................................................................TGACTAGATCxxCACTCATT....................................................	18	1	21.00	0.00	1.00	0.00	20.00
..................................................................................................................TGACTAGATCCATACTCATT....................................................	20	1	21.00	2.00	2.00	0.00	17.00
..................................................................................................................TGACTAGATCAACACTCATTA...................................................	21	1	21.00	0.00	0.00	0.00	21.00
..................................................................................................................TGACTAGATCCACCCTCATT....................................................	20	1	21.00	2.00	5.00	0.00	14.00
...................................................................GTGGGTGGGGGTCCAGTGTTTCA................................................................................................	23	1	20.00	6.00	1.00	0.00	13.00
..................................................................................................................TGACTAGATCCACGCTCATT....................................................	20	1	19.00	2.00	3.00	0.00	14.00
..................................................................................................................GGACTAGATCCACACTCATT....................................................	20	1	19.00	4.00	2.00	0.00	13.00
..................................................................................................................TGACTAGATCCCCACTCATT....................................................	20	1	19.00	2.00	10.00	0.00	7.00
..................................................................................................................TGACTAGACCCACACTCATT....................................................	20	1	19.00	0.00	1.00	0.00	18.00
..................................................................................................................TGACTAGATCCACACTCATC....................................................	20	1	19.00	3.00	3.00	0.00	13.00
..................................................................................................................TGACTAGATCCACACCCATT....................................................	20	1	19.00	2.00	0.00	0.00	17.00
..................................................................................................................TGACTATATCCACACTCATTA...................................................	21	1	18.00	4.00	0.00	0.00	14.00
..................................................................................................................TGACTGGATCCACACTCATT....................................................	20	1	18.00	1.00	2.00	0.00	15.00
..................................................................................................................TGACCAGATCCACACTCATT....................................................	20	1	18.00	0.00	2.00	0.00	16.00
..................................................................AGTGGGTGGGGGTCCAGTGTTTCAC...............................................................................................	25	1	17.00	4.00	2.00	0.00	11.00
..................................................................................................................TGACTAGATCTACACTCATT....................................................	20	1	17.00	1.00	1.00	0.00	15.00
..................................................................................................................TGACTAGATCCACCCTCATTA...................................................	21	1	17.00	4.00	12.00	0.00	1.00
..................................................................................................................TGACTAGATCCACATTCATT....................................................	20	1	16.00	1.00	2.00	0.00	13.00
..................................................................................................................TGACTAGATCCAAACTCAT.....................................................	19	1	16.00	0.00	0.00	0.00	16.00
..................................................................................................................TGACTAGATCCACACTCGTT....................................................	20	1	16.00	1.00	6.00	0.00	9.00
..................................................................................................................TGACTAGATCCACACTCACT....................................................	20	1	15.00	2.00	1.00	0.00	12.00
..................................................................................................................TGAATAGATCCACACTCATTA...................................................	21	1	15.00	1.00	1.00	0.00	13.00
...................................................................................................................GACTAGATCCACACTCATT....................................................	19	1	15.00	0.00	2.00	0.00	13.00
..................................................................................................................TAACTAGATCCACACTCATT....................................................	20	1	14.00	1.00	0.00	0.00	13.00
..................................................................................................................TGACTAGATCCACACTCATA....................................................	20	1	14.00	1.00	3.00	0.00	10.00
..................................................................................................................TGACTAGATTCACACTCATT....................................................	20	1	14.00	1.00	2.00	0.00	11.00
..................................................................................................................TGCCTAGATCCACACTCAT.....................................................	19	1	13.00	0.00	0.00	0.00	13.00
...................................................................GTGGGTGGGGGTCCAGTGTTTCAC...............................................................................................	24	1	13.00	4.00	1.00	0.00	8.00
..................................................................................................................TGACTAAATCCACACTCATT....................................................	20	1	13.00	0.00	1.00	0.00	12.00
..................................................................................................................TGACTAGATACACACTCATTA...................................................	21	1	13.00	2.00	1.00	0.00	10.00
..................................................................................................................TGACTAGGTCCACACTCATT....................................................	20	1	12.00	2.00	0.00	0.00	10.00
..................................................................................................................TGACTAGATCCACACTCATTC...................................................	21	1	12.00	2.00	7.00	0.00	3.00
..................................................................................................................TGCCTAGATCCACACTCATT....................................................	20	1	12.00	0.00	0.00	0.00	12.00
..................................................................................................................TGACTATATCCACACTCATTAA..................................................	22	1	12.00	7.00	1.00	0.00	4.00
..................................................................................................................CGACTAGATCCACACTCATTA...................................................	21	1	12.00	9.00	1.00	0.00	2.00
..................................................................................................................TTACTAGATCCACACTCATTAA..................................................	22	1	11.00	2.00	0.00	0.00	9.00
..................................................................................................................CGACTAGATCCACACTCAT.....................................................	19	1	11.00	0.00	1.00	0.00	10.00
..................................................................................................................TGGCTAGATCCACACTCAT.....................................................	19	1	11.00	0.00	0.00	0.00	11.00
..................................................................................................................TGATTAGATCCACACTCATT....................................................	20	1	11.00	1.00	2.00	0.00	8.00
..................................................................................................................TGACTAGATCCCCACTCATTAA..................................................	22	1	10.00	5.00	4.00	0.00	1.00
..................................................................................................................TGACTAGATCCACACTTATT....................................................	20	1	10.00	1.00	2.00	0.00	7.00
..................................................................................................................TGACTAGATCCACACTCCT.....................................................	19	1	10.00	3.00	1.00	0.00	6.00
..................................................................................................................TGACTAGATCCACTCTCATT....................................................	20	1	10.00	2.00	2.00	0.00	6.00
..................................................................................................................TGACTAGATCCGCACTCATT....................................................	20	1	10.00	0.00	2.00	0.00	8.00
..................................................................................................................TGGCTAGATCCACACTCATTA...................................................	21	1	10.00	2.00	2.00	0.00	6.00
..................................................................AGTGGGTGGGGGTCCAGTGTTTAACA..............................................................................................	26	1	10.00	1.00	0.00	0.00	9.00
...................................................................GTGGGTGTGGGTCCAGTGTTTCACA..............................................................................................	25	1	9.00	0.00	0.00	0.00	9.00
..................................................................AGTGGGTTGGGGTCCAGTGTTTCACA..............................................................................................	26	1	9.00	0.00	0.00	0.00	9.00
..................................................................................................................TGTCTAGATCCACACTCATT....................................................	20	1	9.00	0.00	1.00	0.00	8.00
..................................................................................................................TGACTAGATCCACACTCATTAAAA................................................	24	1	9.00	2.00	0.00	0.00	7.00
..................................................................................................................TGACTAGATxCACACTCATT....................................................	19	1	9.00	0.00	0.00	0.00	9.00
..................................................................................................................AGACTAGATCCACACTCATT....................................................	20	1	9.00	3.00	1.00	0.00	5.00
..................................................................................................................TGACTAGATCCACAATCAT.....................................................	19	1	9.00	0.00	0.00	0.00	9.00
..................................................................................................................TGACTAGATCCACACCCAT.....................................................	19	1	9.00	0.00	0.00	0.00	9.00
..................................................................................................................TGACTAGATCCACACTCATTCA..................................................	22	1	9.00	5.00	2.00	0.00	2.00
..................................................................................................................TGACTAGGTCCACACTCAT.....................................................	19	1	9.00	0.00	2.00	0.00	7.00
..................................................................AGTGGGTGGTGGTCCAGTGTTTCACA..............................................................................................	26	1	8.00	1.00	0.00	0.00	7.00
..................................................................................................................TGACTAGATCCACACTCATTAAC.................................................	23	1	8.00	1.00	1.00	0.00	6.00
..................................................................................................................TGACTAGAGCCACACTCATT....................................................	20	1	8.00	3.00	5.00	0.00	0.00
..................................................................................................................TGACTAGATCCACACCCATTA...................................................	21	1	8.00	1.00	1.00	0.00	6.00
..................................................................................................................TGACTAGCTCCACACTCATT....................................................	20	1	8.00	0.00	0.00	0.00	8.00
..................................................................................................................TGACTAGATCCTCACTCATT....................................................	20	1	8.00	2.00	2.00	0.00	4.00
..................................................................................................................TGACTAGATCCACACTCATTAG..................................................	22	1	8.00	2.00	2.00	0.00	4.00
..................................................................................................................TGACTAGATCGACACTCATT....................................................	20	1	7.00	0.00	1.00	0.00	6.00
..................................................................................................................TGACTAGATCCACACTCAGT....................................................	20	1	7.00	1.00	6.00	0.00	0.00
..................................................................................................................GGACTAGATCCACACTCAT.....................................................	19	1	7.00	0.00	1.00	0.00	6.00

droEug1

ATTTGAATCGGAGCTGG--------AAAT------GAAACTGG-AATTCA---TACTACTGTTTTTAGTGGGTGGGGGTCCAGTGTTTCACATT-GATTTTC--TTAGTATTTGTGACTAGATCCACACTCATTAATAACGGTAGTTCAATCATCGA--------------GCACGT---------

Size

Hit Count

Total Norm

droBia1

A------------CTGG--------AACT------GGAATTGG-AATTCA---TACTACTGTTTTTAGTGGGTGGGGGTCCAGTGTTTCACATT-GATCTTC--TTAGTAGTTGTGACTAGATCCACACTCATTAATAACGGTAGTTCAATCATCAA--------------GCACGT---------

Size

Hit Count

Total Norm

droTak1

C---------------------------T------GGAATTTG-AATTCA---TACTACTGTTTTTAGTGGGTGGGGGTCCAGTGTTTCACATT-GATTTTC--TTAGTATTTGTGACTAGATCCACACTCATTAATAACGGTAGTTCAATCATCAT--------------GAATGT---------

Size

Hit Count

Total Norm

droEle1

A------------ATGG--------------------AAATGG-AATTCA---TACTACTGTTTTTAGTGGGTGGGGGTCCAGTGTTTCACATT-GATTTTC--TTAGTATTTGTGACTAGATCCACACTCATTAATAACGGTAGTTCAGTCATCAA--------------GCACGT---------

Size

Hit Count

Total Norm

droRho1

A------------ATGG--------------------AAATGG-AATTCA---TACTTCTGTTTTTAGTGGGTGGGGGTCCAGTGTTTCACATT-GATTTT---TTAGTATTTGTGACTAGATCCACACTCATTAATAACGGTAGTTCAATCATCAT--------------GCACGT---------

Size

Hit Count

Total Norm

droFic1

-----------------------------------------------TCA---TACTACTGTTTTTAGTGGGTGGGGGTCCAGTGTTTCACATT-GATTTTC--TTAGTATTTGTGACTAGATCCACACTCATTAATAACGGTAGTTCAATCATCAA--------------GCACGT---------

Size

Hit Count

Total Norm

droKik1

G------------CGGC--------GGCGATATCTCGT-GTAC-TATTCATACTACTACTGTTTTTAGTGGGTGGGGGTCCAGTGTTTCACATTTGATTT-CTTCTGATATTTGTGACTAGATCCACACTCATTAATAACGGTAGTTCAGTCAGCAA--------------ACACGT---------

Size

Hit Count

Total Norm

droAna3

G------------GCGG--------CGAT------ACTAATAC-TACTAC---TACTACTGTTTTTAGTGGGTGAGGGTCCAGTGTTTCACATT-GATTT-C--T--GTATTTGTGACTAGATCCACACTCATTAATAACGGTAGTTCAATCAGCAA-----------GGCCCACGT---------	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
..................................................................................................................TGACTAGATCCACACTCATT....................................................	20	1	13174.00	621.00	9050.00	2402.00	1101.00
..................................................................................................................TGACTAGATCCACACTCAT.....................................................	19	1	5478.00	8.00	4004.00	817.00	649.00
..................................................................................................................TGACTAGATCCACACTCATTA...................................................	21	1	1567.00	126.00	400.00	512.00	529.00
..................................................................................................................TGACTAGATCCACACTCATTAA..................................................	22	1	1123.00	57.00	252.00	201.00	613.00
..................................................................................................................TGACTAGATCCACACTCATTAAA.................................................	23	1	723.00	5.00	57.00	14.00	647.00
..................................................................AGTGGGTGAGGGTCCAGTGTTTCACA..............................................................................................	26	1	706.00	50.00	622.00	13.00	21.00
...................................................................GTGGGTGAGGGTCCAGTGTTTCACA..............................................................................................	25	1	459.00	57.00	391.00	3.00	8.00
..................................................................................................................TGACTAGATCCACACTCATTT...................................................	21	1	347.00	11.00	269.00	57.00	10.00
...................................................................GTGGGTGAGGGTCCAGTGTTTCA................................................................................................	23	1	250.00	64.00	178.00	7.00	1.00
..................................................................................................................TGACTAGATCCACACTCATTAT..................................................	22	1	130.00	2.00	83.00	24.00	21.00
..................................................................AGTGGGTGAGGGTCCAGTGTTTCA................................................................................................	24	1	83.00	18.00	60.00	2.00	3.00
..................................................................................................................TGACTAGATCCACACTCATTAAAA................................................	24	1	74.00	0.00	3.00	1.00	70.00
...................................................................GTGGGTGAGGGTCCAGTGTTTCAC...............................................................................................	24	1	73.00	14.00	58.00	1.00	0.00
..................................................................................................................TGACTATATCCACACTCATT....................................................	20	1	65.00	2.00	38.00	11.00	14.00
..................................................................................................................TGACTAGATCCACACTAATT....................................................	20	1	64.00	2.00	57.00	5.00	0.00
..................................................................................................................TGACTAGATCCACACTCATTTT..................................................	22	1	61.00	1.00	46.00	13.00	1.00
..................................................................................................................TTACTAGATCCACACTCATT....................................................	20	1	52.00	2.00	41.00	2.00	7.00
..................................................................................................................TGGCTAGATCCACACTCATT....................................................	20	1	48.00	0.00	43.00	4.00	1.00
..................................................................................................................TGACTAGATACACACTCATT....................................................	20	1	48.00	1.00	33.00	10.00	4.00
..................................................................................................................TGACTAGATCCACACTCATTAAT.................................................	23	1	45.00	0.00	28.00	4.00	13.00
..................................................................................................................TGACTAGATCAACACTCATT....................................................	20	1	39.00	1.00	33.00	4.00	1.00
..................................................................AGTGGGTGAGGGTCCAGTGTTTCAC...............................................................................................	25	1	38.00	8.00	26.00	2.00	2.00
..................................................................................................................TGACTAGATCCACACTCCTT....................................................	20	1	32.00	0.00	0.00	19.00	13.00
..................................................................................................................TGACTATATCCACACTCAT.....................................................	19	1	31.00	0.00	25.00	1.00	5.00
..................................................................................................................TGACTAGATCCACACTAAT.....................................................	19	1	30.00	0.00	29.00	1.00	0.00
..................................................................................................................AGACTAGATCCACACTCATT....................................................	20	1	28.00	0.00	1.00	24.00	3.00
..................................................................................................................CGACTAGATCCACACTCATT....................................................	20	1	27.00	1.00	12.00	8.00	6.00
..................................................................................................................TGACTACATCCACACTCATT....................................................	20	1	27.00	0.00	10.00	11.00	6.00
..................................................................................................................TGACTAGATCCACGCTCATT....................................................	20	1	26.00	1.00	13.00	9.00	3.00
..................................................................................................................TGACTAGATCCACACTCGTT....................................................	20	1	26.00	0.00	11.00	14.00	1.00
..................................................................................................................TGAATAGATCCACACTCATT....................................................	20	1	23.00	1.00	11.00	11.00	0.00
..................................................................................................................TGACTAGGTCCACACTCATT....................................................	20	1	23.00	0.00	19.00	3.00	1.00
..................................................................................................................TGACTAGATCCGCACTCATT....................................................	20	1	23.00	5.00	13.00	4.00	1.00
..................................................................................................................TGACTAGATCCATACTCATT....................................................	20	1	21.00	4.00	10.00	5.00	2.00
..................................................................................................................TGACTAGATCAACACTCAT.....................................................	19	1	21.00	0.00	17.00	4.00	0.00
..................................................................................................................GGACTAGATCCACACTCATT....................................................	20	1	21.00	0.00	2.00	13.00	6.00
..................................................................................................................TGACTAGATCCACACTCCTTA...................................................	21	1	21.00	0.00	1.00	2.00	18.00
..................................................................................................................TGACTAGATACACACTCAT.....................................................	19	1	20.00	0.00	14.00	5.00	1.00
..................................................................................................................TGACTAGATCCACCCTCATT....................................................	20	1	19.00	1.00	1.00	8.00	9.00
..................................................................................................................TGACTAGATCCCCACTCATT....................................................	20	1	18.00	4.00	2.00	10.00	2.00
..................................................................................................................TGACTAGATCCACACCCATT....................................................	20	1	18.00	0.00	9.00	5.00	4.00
..................................................................................................................TTACTAGATCCACACTCAT.....................................................	19	1	18.00	0.00	17.00	0.00	1.00
..................................................................................................................TGACCAGATCCACACTCATT....................................................	20	1	17.00	2.00	10.00	3.00	2.00
..................................................................................................................TGACTAGATCCACACTCACT....................................................	20	1	17.00	0.00	10.00	4.00	3.00
..................................................................................................................TGACTAGATCCACACTCATA....................................................	20	1	17.00	0.00	1.00	2.00	14.00
..................................................................................................................TGACTAGATCTACACTCATT....................................................	20	1	16.00	2.00	10.00	2.00	2.00
..................................................................................................................TGACTAGATCCACACTCATC....................................................	20	1	16.00	0.00	7.00	8.00	1.00
..................................................................................................................TGACTAGATCCACACTCATTACA.................................................	23	1	16.00	0.00	0.00	0.00	16.00
..................................................................................................................TGACTAGACCCACACTCATT....................................................	20	1	15.00	0.00	7.00	5.00	3.00
..................................................................................................................TGACTGGATCCACACTCATT....................................................	20	1	15.00	1.00	7.00	5.00	2.00
..................................................................................................................TGACTAGATCCACACTCATTAAAAA...............................................	25	1	15.00	0.00	0.00	0.00	15.00
...................................................................GTGGGTGAGGGTCCAGTGTTT..................................................................................................	21	1	15.00	7.00	3.00	3.00	2.00
..................................................................................................................TGACTAGATCCACACTCATTAC..................................................	22	1	14.00	1.00	1.00	3.00	9.00
..................................................................................................................TGACTAGATCCACACTCATTTTT.................................................	23	1	14.00	0.00	8.00	5.00	1.00
..................................................................................................................TGACTAGATCCACTCTCATT....................................................	20	1	13.00	1.00	2.00	6.00	4.00
..................................................................................................................TCACTAGATCCACACTCATT....................................................	20	1	13.00	1.00	7.00	2.00	3.00
..................................................................................................................TGGCTAGATCCACACTCAT.....................................................	19	1	13.00	1.00	11.00	1.00	0.00
..................................................................................................................TGACTAGATCCACACTCCT.....................................................	19	1	13.00	0.00	1.00	2.00	10.00
..................................................................................................................TGACTAGATCCACACTCTTT....................................................	20	1	13.00	1.00	3.00	8.00	1.00
..................................................................AGTGGGTGAGGGTCCAGTGTTTC.................................................................................................	23	1	13.00	1.00	12.00	0.00	0.00
..................................................................................................................CGACTAGATCCACACTCAT.....................................................	19	1	13.00	0.00	7.00	4.00	2.00
..................................................................................................................TGACTAGATCCACACTCATTCA..................................................	22	1	12.00	0.00	2.00	0.00	10.00
..................................................................................................................TGACTAGATCCCCACTCATTAA..................................................	22	1	12.00	0.00	0.00	3.00	9.00
..................................................................................................................TGACTAGATCCAAACTCATT....................................................	20	1	12.00	3.00	6.00	3.00	0.00
..................................................................................................................TGACGAGATCCACACTCATT....................................................	20	1	12.00	0.00	0.00	11.00	1.00
..................................................................................................................TGACTAGATCCACATTCATT....................................................	20	1	12.00	0.00	9.00	3.00	0.00
..................................................................................................................TAACTAGATCCACACTCATT....................................................	20	1	12.00	1.00	4.00	5.00	2.00
..................................................................................................................TGACTAGACCCACACTCAT.....................................................	19	1	12.00	0.00	10.00	0.00	2.00
...................................................................GTTGGTGAGGGTCCAGTGTTTCACA..............................................................................................	25	1	12.00	0.00	12.00	0.00	0.00
..................................................................AGGGGGTGAGGGTCCAGTGTTTCACA..............................................................................................	26	1	12.00	1.00	10.00	1.00	0.00
..................................................................................................................TGACTAAATCCACACTCATT....................................................	20	1	11.00	2.00	6.00	1.00	2.00
..................................................................................................................TGACTAGATCCATACTCAT.....................................................	19	1	11.00	0.00	10.00	0.00	1.00
..................................................................................................................TGATTAGATCCACACTCATT....................................................	20	1	11.00	0.00	6.00	2.00	3.00
..................................................................................................................TGACTATATCCACACTCATTA...................................................	21	1	11.00	0.00	2.00	0.00	9.00
..................................................................................................................TGACTAGATCCACACTCATG....................................................	20	1	11.00	0.00	1.00	9.00	1.00
...................................................................GTGGGTGAGGGTCCAGTGTTTC.................................................................................................	22	1	10.00	4.00	4.00	2.00	0.00
..................................................................................................................TGACTCGATCCACACTCATT....................................................	20	1	10.00	0.00	2.00	7.00	1.00
..................................................................................................................TGACTAGATCCACACTTATT....................................................	20	1	10.00	0.00	7.00	2.00	1.00
..................................................................................................................TGACTAGAGCCACACTCATT....................................................	20	1	10.00	0.00	0.00	10.00	0.00
..................................................................................................................AGACTAGATCCACACTCAT.....................................................	19	1	10.00	0.00	0.00	6.00	4.00
..................................................................................................................GGACTAGATCCACACTCAT.....................................................	19	1	10.00	0.00	2.00	7.00	1.00
..................................................................................................................TGACTAGATCCCCACTCATTAAA.................................................	23	1	10.00	0.00	0.00	0.00	10.00
..................................................................................................................TGACTAGATCCACACTCAGT....................................................	20	1	9.00	0.00	0.00	7.00	2.00
..................................................................................................................TGACTAGATCCACACTCATTAG..................................................	22	1	9.00	0.00	0.00	0.00	9.00
..................................................................................................................TGACTAGATCCACACTCCTTAA..................................................	22	1	9.00	0.00	0.00	0.00	9.00
..................................................................................................................TGACTGGATCCACACTCAT.....................................................	19	1	9.00	0.00	4.00	4.00	1.00
..................................................................................................................TGACTAGATCCCCACTCAT.....................................................	19	1	9.00	0.00	3.00	2.00	4.00
..................................................................................................................TGACTAGATCCACAATCATT....................................................	20	1	9.00	0.00	8.00	1.00	0.00
..................................................................................................................TGACTAGATCCTCACTCATT....................................................	20	1	9.00	2.00	2.00	2.00	3.00
...................................................................................................................GACTAGATCCACACTCATT....................................................	19	1	9.00	0.00	7.00	1.00	1.00
..................................................................................................................TGACTAGATTCACACTCATT....................................................	20	1	9.00	0.00	9.00	0.00	0.00
..................................................................................................................TGAATAGATCCACACTCAT.....................................................	19	1	8.00	0.00	3.00	3.00	2.00
..................................................................................................................TGACTAGATCGACACTCATT....................................................	20	1	8.00	3.00	3.00	2.00	0.00
..................................................................AGTGGGTGAGGGTCCAGTGTTT..................................................................................................	22	1	8.00	4.00	1.00	2.00	1.00
..................................................................................................................TGACTAGATCCACACTCGT.....................................................	19	1	8.00	0.00	3.00	4.00	1.00
..................................................................................................................TGACTAGATCCGCACTCAT.....................................................	19	1	8.00	0.00	5.00	3.00	0.00
..................................................................................................................TGCCTAGATCCACACTCATT....................................................	20	1	8.00	0.00	5.00	3.00	0.00
..................................................................................................................TGACTAGGTCCACACTCAT.....................................................	19	1	8.00	0.00	6.00	2.00	0.00
..................................................................AGTGGGTGAGGGTCCAGTGT....................................................................................................	20	1	8.00	4.00	1.00	3.00	0.00
..................................................................................................................TGACTAGATCxxCACTCATT....................................................	18	1	7.00	0.00	7.00	0.00	0.00
..................................................................................................................TGACTAGATCCACACTCATTC...................................................	21	1	7.00	2.00	2.00	2.00	1.00

droBip1

A------------C---------------------------------------TACTACTGTTTTTAGTGGGTGAGGGTCCAGTGTTTCACATT-GATTT-C--T--GTATTTGTGACTAGATCCACACTCATTAATAACGGTAGTTCAATCAGCAA-----------GGCCCACGTGCTCCCCAT

Size

Hit Count

Total Norm

dp4

A------------GTGG--------TTTT------A-AGTTCG-CGATCA---TACTACTGTTTTTAGTGAGTGAGGGTCCAGTGTTTCACATT-GATTTTC--TTAGTATTTGTGACTAGATCCACACTCATTAATAACGGTAGTTCAATCAACAG-----------AATGCACGT---------	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
..................................................................................................................TGACTAGATCCACACTCATT....................................................	20	1	3381.00	627.00	1142.00	1332.00	280.00
..................................................................................................................TGACTAGATCCACACTCATTA...................................................	21	1	2242.00	265.00	1611.00	344.00	22.00
..................................................................................................................TGACTAGATCCACACTCATTAA..................................................	22	1	1880.00	157.00	1511.00	203.00	9.00
..................................................................................................................TGACTAGATCCACACTCAT.....................................................	19	1	453.00	3.00	216.00	219.00	15.00
..................................................................AGTGAGTGAGGGTCCAGTGTTTCACA..............................................................................................	26	1	429.00	107.00	302.00	20.00	0.00
...................................................................GTGAGTGAGGGTCCAGTGTTTCA................................................................................................	23	1	393.00	348.00	24.00	21.00	0.00
...................................................................GTGAGTGAGGGTCCAGTGTTTCACA..............................................................................................	25	1	307.00	218.00	80.00	9.00	0.00
..................................................................................................................TGACTAGATCCACACTCATTAAA.................................................	23	1	240.00	8.00	212.00	19.00	1.00
...................................................................GTGAGTGAGGGTCCAGTGTTTCAC...............................................................................................	24	1	169.00	144.00	20.00	5.00	0.00
..................................................................AGTGAGTGAGGGTCCAGTGTTTCA................................................................................................	24	1	119.00	99.00	18.00	2.00	0.00
..................................................................................................................TGACTAGATCCCCACTCATTAA..................................................	22	1	114.00	0.00	114.00	0.00	0.00
..................................................................AGTGAGTGAGGGTCCAGTG.....................................................................................................	19	1	87.00	65.00	1.00	21.00	0.00
..................................................................................................................TGACTAGATCCACACTCCTTA...................................................	21	1	72.00	0.00	70.00	2.00	0.00
..................................................................AGTGAGTGAGGGTCCAGTGTTTCAC...............................................................................................	25	1	62.00	36.00	26.00	0.00	0.00
..................................................................................................................TGACTAGATCCACACTCATTT...................................................	21	1	60.00	22.00	8.00	30.00	0.00
...................................................................GTGAGTGAGGGTCCAGTGTTTC.................................................................................................	22	1	58.00	49.00	3.00	6.00	0.00
..................................................................AGTGAGTGAGGGTCCAGTGT....................................................................................................	20	1	52.00	42.00	1.00	9.00	0.00
...................................................................GTGAGTGAGGGTCCAGTGTT...................................................................................................	20	1	46.00	34.00	1.00	11.00	0.00
...................................................................GTGAGTGAGGGTCCAGTGTTT..................................................................................................	21	1	40.00	35.00	1.00	4.00	0.00
..................................................................AGTGAGTGAGGGTCCAGTGTT...................................................................................................	21	1	38.00	33.00	0.00	5.00	0.00
..................................................................................................................TGACTAGATCCACCCTCATTA...................................................	21	1	26.00	0.00	26.00	0.00	0.00
..................................................................AGTGAGTGAGGGTCCAGTGTTTC.................................................................................................	23	1	25.00	16.00	8.00	1.00	0.00
..................................................................................................................TGACTAGATCCACACTCATTAT..................................................	22	1	23.00	7.00	12.00	4.00	0.00
..................................................................AGTGAGTGAGGGTCCAGTGTTT..................................................................................................	22	1	17.00	9.00	7.00	1.00	0.00
..................................................................................................................TGACTAGATCCACACTCCTT....................................................	20	1	14.00	1.00	9.00	4.00	0.00
..................................................................................................................TGACTAGATCCACACTCATTAAT.................................................	23	1	12.00	2.00	10.00	0.00	0.00
..................................................................................................................TGACTAGCTCCACACTCATTA...................................................	21	1	11.00	0.00	10.00	1.00	0.00
..................................................................................................................TGACTAGATCCGCACTCATTAA..................................................	22	1	10.00	1.00	8.00	1.00	0.00
..................................................................................................................TGACTAGATCCACACTCATTAAAA................................................	24	1	10.00	0.00	10.00	0.00	0.00
..................................................................................................................TGACTAGATCCACACTCGTT....................................................	20	1	9.00	0.00	4.00	5.00	0.00
..................................................................................................................TGACTGGATCCACACTCATT....................................................	20	1	9.00	0.00	2.00	7.00	0.00
..................................................................................................................TGACTAGATCCACACTCATTAC..................................................	22	1	9.00	2.00	3.00	3.00	1.00
..................................................................................................................TGACTAGATACACACTCATTAA..................................................	22	1	9.00	0.00	8.00	1.00	0.00
..................................................................................................................TGACTAGATCCACTCTCATTAA..................................................	22	1	8.00	0.00	8.00	0.00	0.00
..................................................................................................................CGACTAGATCCACACTCATTA...................................................	21	1	8.00	1.00	6.00	1.00	0.00
..................................................................................................................TGACTAGATCCACACTCATTCA..................................................	22	1	8.00	0.00	6.00	2.00	0.00
..................................................................AGTGAGTGAGGGTCCAGTT.....................................................................................................	19	1	8.00	5.00	0.00	3.00	0.00
..................................................................................................................TGACTAGATCCACACTCATTAAG.................................................	23	1	8.00	0.00	8.00	0.00	0.00
..................................................................................................................TGACGAGATCCACACTCATTA...................................................	21	1	7.00	0.00	7.00	0.00	0.00
...................................................................GTGAGTGAGGGTCCAGTGT....................................................................................................	19	1	7.00	7.00	0.00	0.00	0.00
..................................................................................................................TGACTAGATCCACCCTCCTTA...................................................	21	1	7.00	0.00	7.00	0.00	0.00
..................................................................................................................TGGCTAGATCCACACTCATTA...................................................	21	1	7.00	1.00	6.00	0.00	0.00
..................................................................................................................TGACTAGATCCACACTCATTAAAAA...............................................	25	1	6.00	0.00	6.00	0.00	0.00
..................................................................................................................TGACTAGATCCATACTCATT....................................................	20	1	6.00	0.00	1.00	5.00	0.00
..................................................................................................................TGACTAGATCCCCACTCATTCA..................................................	22	1	6.00	0.00	6.00	0.00	0.00
..................................................................................................................TGGCTAGATCCACACTCATT....................................................	20	1	6.00	0.00	3.00	3.00	0.00
..................................................................................................................TGACTAGATCCACACTCAGTAA..................................................	22	1	6.00	0.00	4.00	2.00	0.00
..................................................................................................................TGACTAGATCCACTCTCATTA...................................................	21	1	6.00	0.00	6.00	0.00	0.00
..................................................................................................................TGACTAGATTCACACTCATT....................................................	20	1	6.00	0.00	4.00	2.00	0.00
..................................................................................................................TGACTAGAGCCACACTCATTA...................................................	21	1	6.00	0.00	4.00	2.00	0.00
..................................................................................................................TGACTAGATCCACACTCATTGA..................................................	22	1	6.00	0.00	6.00	0.00	0.00
...................................................................GTGAGTGAGGGTCCAGTG.....................................................................................................	18	1	6.00	4.00	0.00	2.00	0.00
..................................................................................................................TGACTAGATCCACACTCACTAA..................................................	22	1	6.00	0.00	6.00	0.00	0.00
..................................................................................................................TGACTAGATCCACACTCATTAG..................................................	22	1	6.00	0.00	5.00	1.00	0.00
..................................................................................................................TGACTAGATCCACACTAATTAA..................................................	22	1	6.00	0.00	6.00	0.00	0.00
..................................................................................................................TGACTAGGTCCACACTCATT....................................................	20	1	6.00	1.00	2.00	3.00	0.00
..................................................................................................................TGACTAGATCCACACTCATTTT..................................................	22	1	6.00	2.00	0.00	4.00	0.00
..................................................................................................................TGACTAGATCCACACTCATTTA..................................................	22	1	6.00	0.00	6.00	0.00	0.00
..................................................................................................................TGACTAGATCCACACTCATTC...................................................	21	1	6.00	4.00	2.00	0.00	0.00
..................................................................................................................TCACTAGATCCACACTCATTAA..................................................	22	1	5.00	0.00	5.00	0.00	0.00
..................................................................................................................TGACTAGAACCACACTCATTA...................................................	21	1	5.00	0.00	5.00	0.00	0.00
..................................................................................................................TGACTAGATCTACACTCATTA...................................................	21	1	5.00	0.00	4.00	1.00	0.00
..................................................................................................................GGACTAGATCCACACTCATT....................................................	20	1	5.00	0.00	1.00	4.00	0.00
..................................................................................................................TGACTAGATACACACTCATTA...................................................	21	1	5.00	0.00	5.00	0.00	0.00
..................................................................................................................GGACTAGATCCACACTCATTA...................................................	21	1	5.00	0.00	5.00	0.00	0.00
..................................................................................................................TGACTAGATCCCCACTCATT....................................................	20	1	5.00	0.00	4.00	1.00	0.00
..................................................................................................................TGACTAGATCCACACTCAGT....................................................	20	1	5.00	0.00	3.00	2.00	0.00
..................................................................AGTGAGTGAGGGTCCAGTGTTTCACC..............................................................................................	26	1	5.00	0.00	3.00	2.00	0.00
..................................................................................................................CGACTAGATCCACACTCATT....................................................	20	1	5.00	1.00	2.00	2.00	0.00
..................................................................AGTGAGTGAGGGTCCAGTGTTTCACAA.............................................................................................	27	1	5.00	3.00	2.00	0.00	0.00
..................................................................................................................TGACTAGGTCCACACTCATTAA..................................................	22	1	5.00	0.00	5.00	0.00	0.00
..................................................................................................................TGACTAGATCCACAATCATTA...................................................	21	1	5.00	0.00	5.00	0.00	0.00
..................................................................................................................TGACTAGATCCACACCCATTAA..................................................	22	1	5.00	3.00	2.00	0.00	0.00
..................................................................................................................TGAATAGATCCACACTCATT....................................................	20	1	5.00	0.00	3.00	2.00	0.00
..................................................................................................................TGACTAGATCCACCCTCATTAA..................................................	22	1	5.00	0.00	4.00	1.00	0.00
..................................................................................................................TGACTAGATCCACACTCCTTAA..................................................	22	1	5.00	0.00	5.00	0.00	0.00
..................................................................AGCGAGTGAGGGTCCAGTGTTTCACA..............................................................................................	26	1	5.00	1.00	4.00	0.00	0.00
..................................................................................................................TGACTAGATCCACCCTCATT....................................................	20	1	5.00	0.00	4.00	1.00	0.00
..................................................................................................................TGACTAGATTCACACTCATTAA..................................................	22	1	4.00	0.00	4.00	0.00	0.00
..................................................................................................................TGACTAGATCCACACTCATG....................................................	20	1	4.00	0.00	2.00	2.00	0.00
..................................................................................................................TGACTAGATCCAAACTCATT....................................................	20	1	4.00	1.00	1.00	2.00	0.00
..................................................................................................................TGAATAGATCCACACTCATTA...................................................	21	1	4.00	0.00	3.00	1.00	0.00
..................................................................................................................TAACTAGATCCACACTCATTAA..................................................	22	1	4.00	0.00	3.00	0.00	1.00
..................................................................................................................TGACTAGATCCACACTCTTTAA..................................................	22	1	4.00	1.00	2.00	1.00	0.00
..................................................................................................................TGACTAGATACACACTCATT....................................................	20	1	4.00	0.00	2.00	1.00	1.00
..................................................................................................................TGTCTAGATCCACACTCATTAA..................................................	22	1	4.00	0.00	4.00	0.00	0.00
...................................................................GTGAGTGAGGGTCCAGTGTTTCACAT.............................................................................................	26	1	4.00	2.00	2.00	0.00	0.00
..................................................................................................................TGACTAGATCCACACTTATTA...................................................	21	1	4.00	0.00	4.00	0.00	0.00
..................................................................................................................TGACTAGATCCACAATCATT....................................................	20	1	4.00	0.00	2.00	2.00	0.00
..................................................................................................................TGACTAGATCAACACTCATTAA..................................................	22	1	4.00	0.00	4.00	0.00	0.00
..................................................................................................................TGACTAGATCCACACTAATTA...................................................	21	1	4.00	0.00	2.00	2.00	0.00
..................................................................................................................TGACTAGATCCACACCCATT....................................................	20	1	4.00	2.00	0.00	2.00	0.00
..................................................................................................................TGACTAGATCCCCACTCATTAAA.................................................	23	1	4.00	0.00	4.00	0.00	0.00
..................................................................AGTGAGTGAGGGTCCAGTTT....................................................................................................	20	1	4.00	2.00	0.00	2.00	0.00
..................................................................................................................TGACTAGATCCACATTCATT....................................................	20	1	4.00	2.00	2.00	0.00	0.00
..................................................................................................................TGACTAGAGCCACACTCATT....................................................	20	1	4.00	0.00	1.00	3.00	0.00
..................................................................................................................TTACTAGATCCACACTCATT....................................................	20	1	4.00	0.00	1.00	2.00	1.00
..................................................................................................................TGACTAGATCCACACTCATC....................................................	20	1	4.00	3.00	0.00	1.00	0.00
..................................................................................................................TGACTAGATCCACGCTCATTAA..................................................	22	1	4.00	0.00	4.00	0.00	0.00
..................................................................................................................TGACTAGATCCCCTCTCATTAA..................................................	22	1	4.00	0.00	3.00	1.00	0.00
..................................................................................................................TGACTAGATCCTCACTCATTAA..................................................	22	1	4.00	0.00	4.00	0.00	0.00

droPer1

A------------GTGG--------TTTT------A-AGTTCG-CGATCA---TACTACTGTTTTTAGTGAGTGAGGGTCCAGTGTTTCACATT-GATTTTC--TTAGTATTTGTGACTAGATCCACACTCATTAATAACGGTAGTTCAATCAACAG-----------AATGCACGT---------	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
..................................................................................................................TGACTAGATCCACACTCATT....................................................	20	1	4638.00	210.00	371.00	1468.00	2319.00	270.00
..................................................................................................................TGACTAGATCCACACTCATTA...................................................	21	1	1519.00	51.00	436.00	352.00	380.00	300.00
..................................................................................................................TGACTAGATCCACACTCATTAA..................................................	22	1	1332.00	33.00	291.00	221.00	275.00	512.00
..................................................................................................................TGACTAGATCCACACTCAT.....................................................	19	1	1096.00	1.00	158.00	244.00	662.00	31.00
...................................................................GTGAGTGAGGGTCCAGTGTTTCA................................................................................................	23	1	369.00	324.00	5.00	5.00	35.00	0.00
..................................................................................................................TGACTAGATCCACACTCATTAAA.................................................	23	1	261.00	2.00	52.00	27.00	24.00	156.00
...................................................................GTGAGTGAGGGTCCAGTGTTTC.................................................................................................	22	1	211.00	194.00	2.00	2.00	13.00	0.00
..................................................................AGTGAGTGAGGGTCCAGTGTTTCACA..............................................................................................	26	1	206.00	63.00	69.00	21.00	53.00	0.00
...................................................................GTGAGTGAGGGTCCAGTGTTT..................................................................................................	21	1	199.00	178.00	0.00	4.00	17.00	0.00
...................................................................GTGAGTGAGGGTCCAGTGTT...................................................................................................	20	1	165.00	142.00	0.00	3.00	20.00	0.00
...................................................................GTGAGTGAGGGTCCAGTGTTTCACA..............................................................................................	25	1	147.00	103.00	10.00	11.00	23.00	0.00
...................................................................GTGAGTGAGGGTCCAGTGTTTCAC...............................................................................................	24	1	138.00	114.00	3.00	7.00	14.00	0.00
..................................................................................................................TGACTAGATCCACACTCATTT...................................................	21	1	99.00	10.00	3.00	34.00	49.00	3.00
..................................................................AGTGAGTGAGGGTCCAGTGT....................................................................................................	20	1	55.00	31.00	0.00	5.00	19.00	0.00
..................................................................................................................TGACTAGATCCCCACTCATTAA..................................................	22	1	43.00	0.00	34.00	4.00	5.00	0.00
..................................................................AGTGAGTGAGGGTCCAGTG.....................................................................................................	19	1	42.00	20.00	2.00	4.00	16.00	0.00
..................................................................................................................TGACTAGATCCACACTCATTAAAA................................................	24	1	41.00	0.00	8.00	1.00	2.00	30.00
...................................................................GTGAGTGAGGGTCCAGTGT....................................................................................................	19	1	32.00	26.00	0.00	1.00	5.00	0.00
..................................................................AGTGAGTGAGGGTCCAGTGTTTCA................................................................................................	24	1	31.00	14.00	7.00	2.00	8.00	0.00
..................................................................................................................TGACTAGATCCACACTCCTTA...................................................	21	1	24.00	0.00	15.00	1.00	8.00	0.00
..................................................................................................................TGACTAGATCCACACTCATTAT..................................................	22	1	23.00	0.00	3.00	7.00	12.00	1.00
..................................................................AGTGAGTGAGGGTCCAGTGTTT..................................................................................................	22	1	22.00	12.00	0.00	2.00	8.00	0.00
..................................................................................................................TGACTAGATCCACACTCCTT....................................................	20	1	22.00	0.00	2.00	7.00	13.00	0.00
..................................................................................................................TGACTAGAGCCACACTCATT....................................................	20	1	22.00	0.00	1.00	5.00	16.00	0.00
..................................................................AGTGAGTGAGGGTCCAGTGTTTCAC...............................................................................................	25	1	20.00	5.00	5.00	3.00	7.00	0.00
..................................................................AGTGAGTGAGGGTCCAGTGTT...................................................................................................	21	1	20.00	12.00	0.00	0.00	8.00	0.00
..................................................................................................................TGACTAGATCCACACTCGTT....................................................	20	1	18.00	0.00	2.00	8.00	8.00	0.00
..................................................................................................................TGACTAGATCCATACTCATT....................................................	20	1	16.00	0.00	0.00	2.00	14.00	0.00
..................................................................................................................TGACTAGATCCACACTCATTAC..................................................	22	1	16.00	1.00	4.00	2.00	3.00	6.00
..................................................................................................................CGACTAGATCCACACTCATT....................................................	20	1	14.00	0.00	1.00	6.00	7.00	0.00
..................................................................................................................GGACTAGATCCACACTCATT....................................................	20	1	12.00	0.00	1.00	5.00	6.00	0.00
..................................................................................................................TGACTAGATCCACACTCAGT....................................................	20	1	12.00	0.00	0.00	3.00	9.00	0.00
..................................................................................................................TGACTAGATCCACACCCATT....................................................	20	1	11.00	0.00	1.00	1.00	9.00	0.00
..................................................................................................................TGACTAGATCCCCACTCATT....................................................	20	1	11.00	0.00	0.00	2.00	9.00	0.00
..................................................................................................................AGACTAGATCCACACTCATT....................................................	20	1	11.00	0.00	0.00	1.00	10.00	0.00
..................................................................................................................TGACTAGATCCACGCTCATT....................................................	20	1	11.00	0.00	1.00	0.00	9.00	1.00
..................................................................................................................TGACTCGATCCACACTCATT....................................................	20	1	11.00	0.00	1.00	9.00	1.00	0.00
..................................................................................................................TGACTAGATCCACTCTCATT....................................................	20	1	11.00	0.00	1.00	1.00	9.00	0.00
..................................................................................................................TGACTAGATCCACACTCATTC...................................................	21	1	11.00	1.00	4.00	2.00	4.00	0.00
..................................................................................................................TGACTAGATCCACACTCATTAAAAA...............................................	25	1	10.00	0.00	5.00	0.00	0.00	5.00
...................................................................GTGAGTGAGGGTCCAGTG.....................................................................................................	18	1	10.00	6.00	0.00	0.00	4.00	0.00
..................................................................................................................TGACGAGATCCACACTCATT....................................................	20	1	9.00	0.00	1.00	0.00	8.00	0.00
..................................................................................................................TGACTAGATACACACTCATT....................................................	20	1	9.00	0.00	1.00	1.00	7.00	0.00
..................................................................................................................TGACTAGATCCACAATCATT....................................................	20	1	9.00	0.00	1.00	3.00	5.00	0.00
..................................................................................................................TGACTAGATCCACACTAATT....................................................	20	1	9.00	0.00	0.00	2.00	7.00	0.00
..................................................................................................................TGAATAGATCCACACTCATT....................................................	20	1	9.00	0.00	0.00	2.00	7.00	0.00
..................................................................................................................TGACTAGATCCACACTCATG....................................................	20	1	8.00	0.00	1.00	0.00	6.00	1.00
..................................................................................................................TGACTAGATCCACACTCA......................................................	18	1	8.00	0.00	1.00	1.00	2.00	4.00
..................................................................................................................TGACTATATCCACACTCATT....................................................	20	1	8.00	1.00	0.00	3.00	4.00	0.00
..................................................................................................................TGACGAGAGCCACACTCATT....................................................	20	1	8.00	0.00	0.00	0.00	8.00	0.00
..................................................................AGTGAGTGAGGGTCCAGTT.....................................................................................................	19	1	8.00	1.00	0.00	4.00	3.00	0.00
...................................................................GTGAGTGAGGGTCCAGTGTTTT.................................................................................................	22	1	7.00	7.00	0.00	0.00	0.00	0.00
..................................................................................................................TGACAAGATCCACACTCATT....................................................	20	1	7.00	0.00	0.00	0.00	7.00	0.00
..................................................................................................................TGACTAGGTCCACACTCATT....................................................	20	1	7.00	0.00	0.00	2.00	3.00	2.00
..................................................................................................................TGACTAGAGCCACACTCAT.....................................................	19	1	7.00	0.00	0.00	0.00	7.00	0.00
..................................................................................................................TGACTAGATCCACCCTCATTA...................................................	21	1	6.00	0.00	3.00	1.00	2.00	0.00
..................................................................................................................TGACTAGCTCCACACTCATTA...................................................	21	1	6.00	0.00	4.00	1.00	1.00	0.00
..................................................................................................................TGACTGGATCCACACTCATT....................................................	20	1	6.00	0.00	0.00	3.00	3.00	0.00
..................................................................................................................TGACTAGATCGACACTCATT....................................................	20	1	6.00	0.00	1.00	0.00	5.00	0.00
..................................................................................................................TGACTAGATCCACACTCATTAAC.................................................	23	1	6.00	0.00	0.00	0.00	0.00	6.00
..................................................................................................................TGACTAGATCCACACGCATT....................................................	20	1	6.00	0.00	0.00	0.00	6.00	0.00
..................................................................................................................TGACTAGATCCACTCTCATTA...................................................	21	1	6.00	0.00	3.00	1.00	2.00	0.00
..................................................................................................................CGACTAGATCCACACTCAT.....................................................	19	1	6.00	0.00	0.00	2.00	4.00	0.00
..................................................................................................................TAACTAGATCCACACTCATT....................................................	20	1	6.00	0.00	0.00	1.00	5.00	0.00
..................................................................................................................TGACTAGATCCACACTCATC....................................................	20	1	6.00	0.00	0.00	1.00	3.00	2.00
..................................................................................................................TGACTAGATCCGCACTCATT....................................................	20	1	6.00	0.00	0.00	1.00	5.00	0.00
..................................................................................................................TGGCTAGATCCACACTCATTAA..................................................	22	1	5.00	0.00	1.00	1.00	3.00	0.00
..................................................................................................................TCACTAGATCCACACTCATT....................................................	20	1	5.00	0.00	0.00	1.00	4.00	0.00
..................................................................................................................AGACTAGATCCACACTCATTA...................................................	21	1	5.00	0.00	0.00	0.00	5.00	0.00
..................................................................................................................TGACTAGATCCACACTCTTTAA..................................................	22	1	5.00	0.00	0.00	2.00	3.00	0.00
..................................................................................................................TGACTAGATCCACCCTCAT.....................................................	19	1	5.00	0.00	0.00	1.00	4.00	0.00
..................................................................................................................TGAGTAGATCCACACTCATT....................................................	20	1	5.00	0.00	0.00	0.00	5.00	0.00
..................................................................................................................TGACTAAATCCACACTCATT....................................................	20	1	5.00	0.00	0.00	0.00	4.00	1.00
...................................................................GTGAGTGAGGGTCCAGTGTTTCACT..............................................................................................	25	1	5.00	1.00	0.00	1.00	3.00	0.00
..................................................................................................................TAACTAGATCCACACTCATTA...................................................	21	1	5.00	0.00	0.00	0.00	3.00	2.00
..................................................................................................................TGACTAGATCTACACTCATT....................................................	20	1	5.00	0.00	0.00	3.00	2.00	0.00
..................................................................................................................TGACTAGATCCACACTCGTTA...................................................	21	1	5.00	0.00	2.00	1.00	2.00	0.00
..................................................................................................................CGACTAGATCCACACTCATTA...................................................	21	1	5.00	0.00	2.00	0.00	2.00	1.00
..................................................................................................................TGACTAGATCCACACTCATTCA..................................................	22	1	5.00	0.00	2.00	1.00	2.00	0.00
..................................................................................................................TGACTAGATCCACAATCATTA...................................................	21	1	5.00	0.00	3.00	1.00	0.00	1.00
..................................................................................................................TGACTAGATCCACACTCATTTT..................................................	22	1	5.00	0.00	0.00	2.00	3.00	0.00
...................................................................GTGAGTGAGGGTCCAGGGTTTCA................................................................................................	23	1	4.00	3.00	0.00	0.00	1.00	0.00
..................................................................................................................TGACTAGATCCACACTCAG.....................................................	19	1	4.00	0.00	0.00	0.00	4.00	0.00
..................................................................................................................TGACTAGATCCACACGCATTA...................................................	21	1	4.00	0.00	1.00	1.00	2.00	0.00
..................................................................................................................TGACTAGATCTACACTCATTA...................................................	21	1	4.00	0.00	0.00	4.00	0.00	0.00
..................................................................................................................TGTCTAGATCCACACTCATT....................................................	20	1	4.00	0.00	0.00	0.00	4.00	0.00
..................................................................................................................TGGCTAGATCCACACTCATT....................................................	20	1	4.00	0.00	0.00	0.00	4.00	0.00
..................................................................................................................TGACTAGATCCAAACTCATTAA..................................................	22	1	4.00	0.00	0.00	0.00	1.00	3.00
..................................................................................................................TGACTAGATCCACACTCACT....................................................	20	1	4.00	0.00	0.00	1.00	3.00	0.00
..................................................................................................................TGACTAGATACACACTCAT.....................................................	19	1	4.00	0.00	1.00	0.00	3.00	0.00
..................................................................................................................TGACTAGATCCACACTCACTAA..................................................	22	1	4.00	0.00	2.00	0.00	2.00	0.00
..................................................................................................................TGACTAGATCCACACTCATTAG..................................................	22	1	4.00	0.00	2.00	1.00	1.00	0.00
..................................................................................................................TTACTAGATCCACACTCATTA...................................................	21	1	4.00	0.00	1.00	1.00	2.00	0.00
..................................................................................................................TGAATAGATCCACACTCAT.....................................................	19	1	4.00	0.00	0.00	2.00	2.00	0.00
..................................................................................................................TGACTGGATCCACACTCATTA...................................................	21	1	4.00	0.00	1.00	2.00	0.00	1.00
..................................................................................................................TGACGAGATCCACACTCATG....................................................	20	1	4.00	0.00	0.00	1.00	3.00	0.00
..................................................................................................................TGACTAGATCCACACTCATTAAT.................................................	23	1	4.00	0.00	3.00	1.00	0.00	0.00
...................................................................GTGAGTGAGGGTCCAGTGTTTCT................................................................................................	23	1	4.00	4.00	0.00	0.00	0.00	0.00
..................................................................................................................TGAGTAGATCCACACTCAT.....................................................	19	1	4.00	0.00	0.00	0.00	4.00	0.00
..................................................................................................................TGACTGGATCCATACTCATT....................................................	20	1	3.00	0.00	0.00	0.00	3.00	0.00
..................................................................................................................TGACTAGATCAACACTCATT....................................................	20	1	3.00	0.00	0.00	0.00	2.00	1.00

droWil1

A------------CTAC--------TACT------ACGACTAG-AACAAC---TACTACTGTTTTTAGTGAGTGAGGGTCCAGTGTTTCACATT-AAATAT---TTAGTATTTGTGACTAGATCCACACTCATTAATAACGGTAGTTCAATCATCGAAAATAAAAAAAGAAACACGT---------	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
..................................................................................................................TGACTAGATCCACACTCATT....................................................	20	1	24432.00	193.00	8003.00	9331.00	6905.00
..................................................................................................................TGACTAGATCCACACTCAT.....................................................	19	1	15275.00	5.00	5425.00	8141.00	1704.00
..................................................................................................................TGACTAGATCCACACTCATTA...................................................	21	1	8043.00	88.00	5423.00	743.00	1789.00
..................................................................................................................TGACTAGATCCACACTCATTAA..................................................	22	1	7875.00	43.00	5626.00	525.00	1681.00
..................................................................AGTGAGTGAGGGTCCAGTGTTTCACA..............................................................................................	26	1	3480.00	74.00	2267.00	1139.00	0.00
..................................................................................................................TGACTAGATCCACACTCATTAAA.................................................	23	1	3020.00	2.00	2707.00	96.00	215.00
...................................................................GTGAGTGAGGGTCCAGTGTTTCACA..............................................................................................	25	1	1886.00	122.00	1184.00	580.00	0.00
...................................................................GTGAGTGAGGGTCCAGTGTTTCA................................................................................................	23	1	797.00	112.00	125.00	560.00	0.00
..................................................................................................................TGACTAGATCCACACTCATTAAAA................................................	24	1	381.00	1.00	369.00	2.00	9.00
..................................................................AGTGAGTGAGGGTCCAGTGTTTCA................................................................................................	24	1	339.00	19.00	154.00	166.00	0.00
..................................................................................................................TGACTAGATCCACACTCATTT...................................................	21	1	322.00	2.00	51.00	146.00	123.00
..................................................................AGTGAGTGAGGGTCCAGTGTTTCAC...............................................................................................	25	1	320.00	12.00	224.00	84.00	0.00
..................................................................................................................TGACTAGATCCACACTCATTAC..................................................	22	1	263.00	4.00	95.00	18.00	146.00
..................................................................................................................TGACTAGATCCACACTCATTAT..................................................	22	1	263.00	2.00	136.00	70.00	55.00
...................................................................GTGAGTGAGGGTCCAGTGTTTCAC...............................................................................................	24	1	251.00	33.00	157.00	61.00	0.00
..................................................................................................................TGACTAGATCCACACTCA......................................................	18	1	180.00	0.00	16.00	1.00	163.00
..................................................................................................................TGACTAGATCCACACTCATTAAT.................................................	23	1	138.00	0.00	96.00	21.00	21.00
..................................................................................................................TGACTAGATCCACACTCATC....................................................	20	1	104.00	0.00	8.00	9.00	87.00
...................................................................GTGAGTGAGGGTCCAGTGTTTC.................................................................................................	22	1	99.00	7.00	47.00	44.00	1.00
..................................................................................................................TGACTAGATCCACACTCATTAAAAA...............................................	25	1	86.00	0.00	83.00	0.00	3.00
...................................................................GTGAGTGAGGGTCCAGTGTTT..................................................................................................	21	1	72.00	14.00	42.00	16.00	0.00
..................................................................AGTGAGTGAGGGTCCAGTGTTTC.................................................................................................	23	1	66.00	3.00	49.00	14.00	0.00
..................................................................AGTGAGTGAGGGTCCAGTGTTTCACAA.............................................................................................	27	1	66.00	0.00	61.00	5.00	0.00
..................................................................................................................CGACTAGATCCACACTCATT....................................................	20	1	56.00	0.00	15.00	33.00	8.00
..................................................................................................................TGACTAGATCCAAACTCATT....................................................	20	1	52.00	0.00	2.00	36.00	14.00
..................................................................................................................TGACTAGATCCACACTCATA....................................................	20	1	51.00	0.00	32.00	6.00	13.00
..................................................................AGTGAGTGAGGGTCCAGTGTTT..................................................................................................	22	1	50.00	8.00	34.00	8.00	0.00
...................................................................GTGAGTGAGGGTCCAGTGTTTCACAA.............................................................................................	26	1	49.00	0.00	43.00	6.00	0.00
..................................................................................................................TGACTAGATCCACACTCATTACA.................................................	23	1	44.00	0.00	41.00	2.00	1.00
..................................................................................................................TGACTAGATCCACACTCATTTT..................................................	22	1	44.00	0.00	11.00	17.00	16.00
..................................................................................................................TGACTAGATCCACACTCATTAAC.................................................	23	1	43.00	0.00	27.00	3.00	13.00
..................................................................................................................CGACTAGATCCACACTCAT.....................................................	19	1	41.00	0.00	5.00	36.00	0.00
..................................................................................................................TGACTAGATCCACAATCATT....................................................	20	1	38.00	0.00	5.00	33.00	0.00
..................................................................................................................TGACTAGATCCACACTAATT....................................................	20	1	36.00	0.00	8.00	28.00	0.00
..................................................................................................................TGACTAGATCAACACTCATT....................................................	20	1	35.00	0.00	7.00	27.00	1.00
..................................................................................................................TGACTAGATACACACTCATT....................................................	20	1	35.00	0.00	10.00	24.00	1.00
..................................................................................................................TGACTAGATCCAAACTCAT.....................................................	19	1	35.00	0.00	4.00	28.00	3.00
..................................................................................................................TGACTATATCCACACTCATT....................................................	20	1	35.00	0.00	14.00	14.00	7.00
..................................................................................................................TGACTAGATCCACACTCATTAG..................................................	22	1	35.00	0.00	26.00	6.00	3.00
..................................................................................................................TGACTAGATCCACACTCAC.....................................................	19	1	34.00	0.00	3.00	4.00	27.00
..................................................................................................................TGACTAGATCCACAATCAT.....................................................	19	1	34.00	0.00	1.00	33.00	0.00
..................................................................................................................TGACTAGATACACACTCAT.....................................................	19	1	34.00	0.00	3.00	30.00	1.00
..................................................................................................................TGACTAGATCCACACTAAT.....................................................	19	1	32.00	0.00	9.00	23.00	0.00
..................................................................................................................TGACTAGATCCATACTCATT....................................................	20	1	31.00	0.00	11.00	13.00	7.00
..................................................................................................................TGACTAGATCAACACTCAT.....................................................	19	1	30.00	0.00	9.00	21.00	0.00
..................................................................................................................TGACTAGATCCACGCTCATT....................................................	20	1	28.00	1.00	10.00	12.00	5.00
..................................................................................................................AGACTAGATCCACACTCATT....................................................	20	1	26.00	0.00	4.00	22.00	0.00
..................................................................................................................TGACTAGGTCCACACTCATT....................................................	20	1	25.00	0.00	4.00	14.00	7.00
..................................................................................................................TTACTAGATCCACACTCATT....................................................	20	1	22.00	0.00	8.00	11.00	3.00
..................................................................................................................TGACTAGATCCACACTCATTAAG.................................................	23	1	22.00	0.00	16.00	4.00	2.00
..................................................................................................................TGACTATATCCACACTCAT.....................................................	19	1	21.00	0.00	13.00	5.00	3.00
..................................................................................................................TGACTAGATCCGCACTCATT....................................................	20	1	21.00	0.00	8.00	10.00	3.00
..................................................................................................................TGAATAGATCCACACTCATT....................................................	20	1	21.00	0.00	5.00	16.00	0.00
..................................................................................................................TGACTAGATCCGCACTCAT.....................................................	19	1	19.00	0.00	6.00	11.00	2.00
..................................................................................................................GGACTAGATCCACACTCATT....................................................	20	1	19.00	0.00	4.00	14.00	1.00
..................................................................................................................CGACTAGATCCACACTCATTA...................................................	21	1	19.00	0.00	15.00	4.00	0.00
..................................................................................................................TGACTAGACCCACACTCATT....................................................	20	1	19.00	1.00	6.00	9.00	3.00
..................................................................................................................TGACTAGATCCACACCCATT....................................................	20	1	19.00	0.00	6.00	11.00	2.00
..................................................................................................................TGACTAGATCCAGACTCATT....................................................	20	1	19.00	0.00	0.00	0.00	19.00
..................................................................................................................TGACCAGATCCACACTCATT....................................................	20	1	19.00	0.00	5.00	11.00	3.00
..................................................................................................................TGACTAGATCCACACTCAA.....................................................	19	1	18.00	0.00	14.00	2.00	2.00
..................................................................................................................GGACTAGATCCACACTCAT.....................................................	19	1	18.00	0.00	1.00	17.00	0.00
..................................................................................................................TGACTAGATCCACACTCATTAAAT................................................	24	1	18.00	0.00	17.00	1.00	0.00
..................................................................................................................TGAATAGATCCACACTCAT.....................................................	19	1	18.00	0.00	2.00	16.00	0.00
..................................................................................................................TGACTAGATCCATACTCAT.....................................................	19	1	17.00	0.00	3.00	12.00	2.00
..................................................................AGTGAGTGAGGGTCCAGTGTTTCCCA..............................................................................................	26	1	17.00	0.00	1.00	16.00	0.00
..................................................................................................................TGACTAGGTCCACACTCAT.....................................................	19	1	17.00	0.00	7.00	10.00	0.00
..................................................................................................................TGACTAGATCCACACTCT......................................................	18	1	16.00	0.00	0.00	0.00	16.00
...................................................................GTGAGTGAGGGTCCAGTGTTTCAA...............................................................................................	24	1	16.00	2.00	10.00	4.00	0.00
..................................................................................................................AGACTAGATCCACACTCAT.....................................................	19	1	16.00	0.00	1.00	15.00	0.00
..................................................................................................................TGACTAGATCCACACTCACT....................................................	20	1	16.00	2.00	4.00	7.00	3.00
..................................................................................................................TGACTAGATCCACATTCATT....................................................	20	1	16.00	0.00	1.00	12.00	3.00
..................................................................................................................TGACTAGATCCACACCCAT.....................................................	19	1	16.00	0.00	4.00	10.00	2.00
...................................................................................................................GACTAGATCCACACTCATT....................................................	19	1	15.00	0.00	1.00	8.00	6.00
..................................................................................................................TGACTAGATCCACACTCATTATT.................................................	23	1	15.00	1.00	4.00	0.00	10.00
..................................................................................................................TTACTAGATCCACACTCATTAA..................................................	22	1	15.00	0.00	14.00	1.00	0.00
..................................................................................................................TGCCTAGATCCACACTCATT....................................................	20	1	15.00	0.00	4.00	9.00	2.00
..................................................................................................................TCACTAGATCCACACTCATT....................................................	20	1	14.00	0.00	7.00	7.00	0.00
..................................................................................................................TGACTAGATCCACACTCCTT....................................................	20	1	14.00	0.00	1.00	13.00	0.00
..................................................................................................................TGGCTAGATCCACACTCAT.....................................................	19	1	14.00	0.00	6.00	7.00	1.00
..................................................................................................................TGACCAGATCCACACTCAT.....................................................	19	1	14.00	0.00	5.00	8.00	1.00
..................................................................................................................TGACTAGATCCACACTCATTACT.................................................	23	1	14.00	0.00	5.00	2.00	7.00
..................................................................................................................TAACTAGATCCACACTCATT....................................................	20	1	14.00	0.00	2.00	11.00	1.00
..................................................................................................................TGACTAGATCCACACTCGT.....................................................	19	1	14.00	0.00	5.00	7.00	2.00
..................................................................................................................TGACTAGATCCACACTCATTG...................................................	21	1	14.00	0.00	9.00	3.00	2.00
..................................................................................................................TTACTAGATCCACACTCAT.....................................................	19	1	14.00	0.00	11.00	3.00	0.00
..................................................................................................................TGGCTAGATCCACACTCATT....................................................	20	1	14.00	0.00	5.00	4.00	5.00
..................................................................................................................TGACTAGATCTACACTCATT....................................................	20	1	14.00	0.00	4.00	9.00	1.00
..................................................................................................................TGACTAGATCCACACTAATTA...................................................	21	1	13.00	0.00	11.00	2.00	0.00
..................................................................................................................TGACTAGATCCACGCTCAT.....................................................	19	1	13.00	0.00	3.00	10.00	0.00
..................................................................................................................TGACTAGATCAACACTCATTAA..................................................	22	1	13.00	0.00	11.00	1.00	1.00
..................................................................................................................TGATTAGATCCACACTCAT.....................................................	19	1	13.00	0.00	5.00	8.00	0.00
..................................................................................................................TGACTAGATCCACACTCGTT....................................................	20	1	12.00	0.00	2.00	6.00	4.00
..................................................................................................................TGACTAGATCCAAACTCATTAA..................................................	22	1	12.00	0.00	4.00	4.00	4.00
..................................................................................................................TGACTAGCTCCACACTCAT.....................................................	19	1	12.00	0.00	2.00	10.00	0.00
..................................................................................................................TGACTAGATCAACACTCATTA...................................................	21	1	12.00	0.00	9.00	3.00	0.00
..................................................................................................................TGACTAGATCCTCACTCATT....................................................	20	1	12.00	0.00	8.00	4.00	0.00
..................................................................................................................TGATTAGATCCACACTCATT....................................................	20	1	12.00	0.00	3.00	8.00	1.00
..................................................................................................................TGACTATATCCACACTCATTA...................................................	21	1	11.00	1.00	4.00	2.00	4.00
...................................................................GTGAGTGAGGGTCCAGTGTTTCACC..............................................................................................	25	1	11.00	0.00	0.00	11.00	0.00
..................................................................................................................TGACTAGATCCACACTTAT.....................................................	19	1	11.00	0.00	1.00	10.00	0.00

droVir3

A------------CGAG-----------T------GGATCG-AATATGCG---TACTACTGTTTTTAGTGAGTGAGGGTCCAGTGTTTCACATT-CGTTTTT-TCAAGTATTTGTGACTAGATCCACACTCATTAACAACGGTAGTTCAATCAGCAA--------------ATA------------	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
..................................................................................................................TGACTAGATCCACACTCATT....................................................	20	1	5887.00	617.00	1748.00	338.00	1499.00	1685.00
..................................................................................................................TGACTAGATCCACACTCAT.....................................................	19	1	1748.00	16.00	873.00	240.00	148.00	471.00
..................................................................................................................TGACTAGATCCACACTCATTA...................................................	21	1	1546.00	324.00	406.00	238.00	215.00	363.00
..................................................................................................................TGACTAGATCCACACTCATTAA..................................................	22	1	1501.00	190.00	273.00	227.00	337.00	474.00
..................................................................................................................TGACTAGATCCACACTCATC....................................................	20	1	475.00	38.00	38.00	3.00	267.00	129.00
..................................................................AGTGAGTGAGGGTCCAGTGTTTCACA..............................................................................................	26	1	382.00	209.00	10.00	163.00	0.00	0.00
..................................................................................................................TGACTAGATCCACACTCATTAAA.................................................	23	1	305.00	24.00	28.00	126.00	57.00	70.00
...................................................................GTGAGTGAGGGTCCAGTGTTTCA................................................................................................	23	1	132.00	116.00	8.00	8.00	0.00	0.00
..................................................................AGTGAGTGAGGGTCCAGTGTTTCA................................................................................................	24	1	131.00	114.00	3.00	14.00	0.00	0.00
...................................................................GTGAGTGAGGGTCCAGTGTTTCACA..............................................................................................	25	1	116.00	91.00	4.00	21.00	0.00	0.00
..................................................................................................................TGACTAGATCCACACTCA......................................................	18	1	85.00	2.00	2.00	2.00	25.00	54.00
..................................................................................................................TGACTAGATCCACACTCATTAACC................................................	24	1	70.00	1.00	0.00	0.00	61.00	8.00
..................................................................................................................TGACTAGATCCACACTCATTT...................................................	21	1	64.00	7.00	22.00	5.00	5.00	25.00
..................................................................AGTGAGTGAGGGTCCAGTGTTTCAC...............................................................................................	25	1	50.00	37.00	5.00	8.00	0.00	0.00
..................................................................................................................TGACTAGATCCACACTCATTACC.................................................	23	1	47.00	4.00	0.00	0.00	26.00	17.00
..................................................................................................................TGACTAGATCCACACTCATTAC..................................................	22	1	44.00	4.00	5.00	1.00	13.00	21.00
..................................................................................................................TGACTAGATCCACACTCATTAAAA................................................	24	1	38.00	0.00	1.00	28.00	5.00	4.00
..................................................................................................................TGACTAGATCCACACTCATTAT..................................................	22	1	36.00	6.00	15.00	7.00	2.00	6.00
..................................................................................................................TGACTAGATCCACACTCATTC...................................................	21	1	34.00	5.00	7.00	3.00	13.00	6.00
..................................................................AGTGAGTGAGGGTCCAGTGTTTC.................................................................................................	23	1	29.00	24.00	4.00	1.00	0.00	0.00
...................................................................GTGAGTGAGGGTCCAGTGTTTCAC...............................................................................................	24	1	23.00	16.00	5.00	2.00	0.00	0.00
..................................................................................................................TGACTAGATCCACACTCATTAAT.................................................	23	1	18.00	0.00	2.00	6.00	2.00	8.00
..................................................................................................................TGACTAGATCCACACTCATTAACCC...............................................	25	1	17.00	0.00	0.00	0.00	16.00	1.00
..................................................................AGTGAGTGAGGGTCCAGTGTTT..................................................................................................	22	1	17.00	12.00	5.00	0.00	0.00	0.00
..................................................................................................................TGACTAGATCCACACTCATTAAC.................................................	23	1	15.00	1.00	0.00	4.00	3.00	7.00
..................................................................................................................CGACTAGATCCACACTCATT....................................................	20	1	14.00	2.00	8.00	1.00	2.00	1.00
..................................................................................................................TGACTAGATCCACACTCCTT....................................................	20	1	14.00	0.00	9.00	5.00	0.00	0.00
..................................................................................................................TGACTAGATCCCCACTCATT....................................................	20	1	14.00	0.00	3.00	1.00	6.00	4.00
...................................................................GTGAGTGAGGGTCCAGTGTTTC.................................................................................................	22	1	14.00	11.00	2.00	1.00	0.00	0.00
..................................................................................................................TGACTAGATCCACACTCATA....................................................	20	1	13.00	1.00	4.00	1.00	3.00	4.00
..................................................................................................................TGACTAGATCCACACTCATTAAAAA...............................................	25	1	13.00	0.00	0.00	12.00	1.00	0.00
..................................................................AGTGAGTGAGGGTCCAGTGTTTCAA...............................................................................................	25	1	11.00	11.00	0.00	0.00	0.00	0.00
...................................................................GTGAGTGAGGGTCCAGTGTTT..................................................................................................	21	1	11.00	7.00	3.00	1.00	0.00	0.00
..................................................................................................................TGACTAGATCCACACTCCTTA...................................................	21	1	11.00	0.00	6.00	5.00	0.00	0.00
..................................................................................................................TGACTAGATCCACACTCATTATCC................................................	24	1	11.00	0.00	0.00	0.00	11.00	0.00
..................................................................................................................TGGCTAGATCCACACTCATT....................................................	20	1	10.00	0.00	4.00	2.00	3.00	1.00
..................................................................................................................TGACTAGATCCACACTCAGT....................................................	20	1	10.00	0.00	10.00	0.00	0.00	0.00
..................................................................AGTGAGTGAGGGTCCAGTGTTTCACAA.............................................................................................	27	1	10.00	7.00	0.00	2.00	1.00	0.00
..................................................................................................................TGACTACATCCACACTCATT....................................................	20	1	9.00	1.00	5.00	1.00	0.00	2.00
..................................................................AGTGAGTGAGGGTCCAGTGTT...................................................................................................	21	1	9.00	7.00	2.00	0.00	0.00	0.00
..................................................................................................................TGACTAGATCCACACTCATCT...................................................	21	1	9.00	1.00	2.00	0.00	3.00	3.00
..................................................................................................................TGACTAGATCCACCCTCATT....................................................	20	1	9.00	0.00	7.00	1.00	0.00	1.00
..................................................................AGTGAGTGAGGGTCCAGTGT....................................................................................................	20	1	9.00	7.00	2.00	0.00	0.00	0.00
..................................................................................................................TGACTAGATCCACACTCATTTT..................................................	22	1	9.00	0.00	3.00	3.00	2.00	1.00
..................................................................................................................TGACTAGATCCACACTCATTACCC................................................	24	1	8.00	0.00	0.00	0.00	5.00	3.00
..................................................................................................................TGACTAGATACACACTCATT....................................................	20	1	8.00	1.00	3.00	1.00	0.00	3.00
..................................................................................................................TGACTAGATCCACACTCATTAAG.................................................	23	1	8.00	0.00	0.00	7.00	1.00	0.00
..................................................................................................................TGACTAGATCCACACTCCT.....................................................	19	1	8.00	0.00	3.00	5.00	0.00	0.00
..................................................................................................................CGACTAGATCCACACTCATTA...................................................	21	1	8.00	3.00	5.00	0.00	0.00	0.00
..................................................................................................................TGACTAGATCCACGCTCATT....................................................	20	1	8.00	0.00	3.00	0.00	3.00	2.00
..................................................................................................................TGACTAGATCCACACTCAC.....................................................	19	1	7.00	0.00	0.00	0.00	2.00	5.00
..................................................................................................................TGACTATATCCACACTCATT....................................................	20	1	7.00	1.00	3.00	3.00	0.00	0.00
..................................................................................................................TGACTAAATCCACACTCATT....................................................	20	1	7.00	0.00	5.00	1.00	1.00	0.00
..................................................................................................................TGACTAGACCCACACTCATT....................................................	20	1	7.00	0.00	5.00	0.00	2.00	0.00
..................................................................AGTGAGTGAGGGTCCAGTG.....................................................................................................	19	1	7.00	3.00	4.00	0.00	0.00	0.00
..................................................................................................................TGACTGGATCCACACTCATT....................................................	20	1	7.00	1.00	3.00	0.00	0.00	3.00
..................................................................................................................TGACTAGATCCACACTCATTCC..................................................	22	1	7.00	0.00	1.00	0.00	5.00	1.00
..................................................................................................................TGACTAGATCCACACTCATTATC.................................................	23	1	7.00	0.00	0.00	0.00	4.00	3.00
..................................................................................................................TGACTAGATCCACACTCGTT....................................................	20	1	7.00	0.00	5.00	1.00	0.00	1.00
..................................................................................................................TGACTGGATCCACACTCAT.....................................................	19	1	7.00	0.00	4.00	2.00	0.00	1.00
..................................................................................................................TGACTAGATCCACACTCGT.....................................................	19	1	7.00	0.00	5.00	2.00	0.00	0.00
..................................................................................................................TGACTAGATCCACACTCATCAA..................................................	22	1	6.00	1.00	0.00	3.00	2.00	0.00
..................................................................................................................TGACTAGATCCGCACTCAT.....................................................	19	1	6.00	0.00	2.00	2.00	0.00	2.00
..................................................................................................................TGACTAGATCCCCACTCATTA...................................................	21	1	6.00	1.00	1.00	2.00	2.00	0.00
...................................................................GTGAGTGAGGGTCCAGTGTTTCAA...............................................................................................	24	1	6.00	6.00	0.00	0.00	0.00	0.00
..................................................................................................................TGACTCGATCCACACTCATT....................................................	20	1	6.00	0.00	6.00	0.00	0.00	0.00
..................................................................................................................TGACTAGATCCACACTCACT....................................................	20	1	6.00	0.00	1.00	2.00	0.00	3.00
..................................................................................................................TGACTAGATCCACACTAATT....................................................	20	1	6.00	3.00	2.00	0.00	1.00	0.00
..................................................................................................................TGACTAGATCCCCACTCAT.....................................................	19	1	6.00	0.00	4.00	1.00	1.00	0.00
..................................................................................................................TGACTAGATCCACACTCAG.....................................................	19	1	6.00	0.00	2.00	0.00	1.00	3.00
..................................................................................................................TGACTAGATCAACACTCATT....................................................	20	1	6.00	1.00	5.00	0.00	0.00	0.00
..................................................................................................................TGACTAGATCCACACTCATG....................................................	20	1	6.00	0.00	3.00	0.00	1.00	2.00
..................................................................AGTGAGTGAGGGTCCAGTGTTTCACC..............................................................................................	26	1	6.00	2.00	0.00	4.00	0.00	0.00
..................................................................................................................TGACTAGATCCACACTCATTACA.................................................	23	1	5.00	1.00	0.00	4.00	0.00	0.00
..................................................................................................................TGACTAGATCCACCCTCATTA...................................................	21	1	5.00	0.00	3.00	2.00	0.00	0.00
..................................................................................................................TGACTAGATCCACCCTCAT.....................................................	19	1	5.00	0.00	4.00	1.00	0.00	0.00
..................................................................................................................TGACTAGACCCACACTCATTAA..................................................	22	1	5.00	1.00	3.00	1.00	0.00	0.00
..................................................................................................................TGACTAGATCCACACTCATTAATC................................................	24	1	5.00	0.00	0.00	1.00	3.00	1.00
..................................................................................................................TGACTAGATCCACACTCTTT....................................................	20	1	5.00	0.00	4.00	0.00	1.00	0.00
..................................................................................................................TGACTAGATGCACACTCATT....................................................	20	1	5.00	0.00	5.00	0.00	0.00	0.00
..................................................................AGTGAGTGAGGGTCCAGTGTTTCC................................................................................................	24	1	5.00	4.00	1.00	0.00	0.00	0.00
..................................................................................................................TGACTAGATCCACATTCATT....................................................	20	1	5.00	0.00	3.00	0.00	0.00	2.00
..................................................................................................................TGACTAGACCCACACTCAT.....................................................	19	1	5.00	0.00	4.00	1.00	0.00	0.00
..................................................................................................................TGACTAGATCCATACTCATT....................................................	20	1	5.00	0.00	4.00	0.00	1.00	0.00
..................................................................AGTGAGTGAGGGTCCAGTGTTC..................................................................................................	22	1	5.00	5.00	0.00	0.00	0.00	0.00
...................................................................GTGAGTGAGGGTCCAGTGTT...................................................................................................	20	1	5.00	5.00	0.00	0.00	0.00	0.00
..................................................................................................................TGACTAGAGCCACACTCATTA...................................................	21	1	4.00	0.00	2.00	2.00	0.00	0.00
..................................................................................................................TGACCAGATCCACACTCATT....................................................	20	1	4.00	0.00	1.00	3.00	0.00	0.00
..................................................................................................................TGACTAGATCCTCACTCATT....................................................	20	1	4.00	0.00	4.00	0.00	0.00	0.00
..................................................................AGTGAGTGAGGGTCCAGT......................................................................................................	18	1	4.00	2.00	1.00	1.00	0.00	0.00
..................................................................................................................TGACTAGGTCCACACTCATT....................................................	20	1	4.00	1.00	0.00	2.00	0.00	1.00
..................................................................................................................TGACTAGATCCACTCTCAT.....................................................	19	1	4.00	0.00	4.00	0.00	0.00	0.00
..................................................................................................................TGACTAGATCCACTCTCATT....................................................	20	1	4.00	1.00	2.00	0.00	1.00	0.00
..................................................................................................................TGACTATATCCACACTCATTAA..................................................	22	1	4.00	0.00	0.00	4.00	0.00	0.00
..................................................................................................................TGACTAGATCCACACTCCTTAA..................................................	22	1	4.00	0.00	0.00	3.00	0.00	1.00
..................................................................................................................TGTCTAGATCCACACTCAT.....................................................	19	1	4.00	0.00	3.00	0.00	0.00	1.00
..................................................................................................................TGACTAGATACACACTCATTA...................................................	21	1	4.00	0.00	1.00	1.00	0.00	2.00
..................................................................................................................TGACTAGATCCACACTCGTTA...................................................	21	1	4.00	1.00	3.00	0.00	0.00	0.00
..................................................................................................................TGACTAGATCCGCACTCATT....................................................	20	1	4.00	0.00	3.00	1.00	0.00	0.00
..................................................................................................................TGAATAGATCCACACTCATT....................................................	20	1	4.00	0.00	4.00	0.00	0.00	0.00
..................................................................................................................TGACTAGATCCACACTCATCC...................................................	21	1	4.00	1.00	0.00	0.00	2.00	1.00

droMoj3

A------------CG-G--------TTCT------G-ATCG-GAAATACG---TACTACTGTTTTTAGTGAGTGAGGGTCCAGTGTTTCACATT-GTTTGCT--TAAGTATTTGTGACTAGATCCACACTCATTAAAAACGGTAGTTCAATC----------------------------------	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
..................................................................................................................TGACTAGATCCACACTCATT....................................................	20	1	6596.00	1064.00	2614.00	2200.00	718.00
..................................................................................................................TGACTAGATCCACACTCAT.....................................................	19	1	3667.00	39.00	1858.00	1358.00	412.00
..................................................................................................................TGACTAGATCCACACTCATTA...................................................	21	1	2218.00	465.00	379.00	296.00	1078.00
..................................................................................................................TGACTAGATCCACACTCATTAA..................................................	22	1	1920.00	246.00	296.00	147.00	1231.00
..................................................................AGTGAGTGAGGGTCCAGTGTTTCACA..............................................................................................	26	1	1880.00	709.00	70.00	39.00	1062.00
...................................................................GTGAGTGAGGGTCCAGTGTTTCACA..............................................................................................	25	1	1253.00	986.00	56.00	30.00	181.00
..................................................................................................................TGACTAGATCCACACTCATTAAA.................................................	23	1	457.00	29.00	33.00	22.00	373.00
..................................................................AGTGAGTGAGGGTCCAGTGTTTCA................................................................................................	24	1	440.00	344.00	46.00	17.00	33.00
...................................................................GTGAGTGAGGGTCCAGTGTTTCA................................................................................................	23	1	336.00	299.00	14.00	7.00	16.00
..................................................................AGTGAGTGAGGGTCCAGTGTTTCAC...............................................................................................	25	1	315.00	170.00	68.00	23.00	54.00
..................................................................................................................TGACTAGATCCACACTCATTC...................................................	21	1	185.00	87.00	59.00	37.00	2.00
..................................................................................................................TGACTAGATCCACACTCATC....................................................	20	1	184.00	59.00	61.00	62.00	2.00
..................................................................................................................TGACTAGATCCCCACTCATTAA..................................................	22	1	176.00	0.00	4.00	8.00	164.00
...................................................................GTGAGTGAGGGTCCAGTGTTTCAC...............................................................................................	24	1	163.00	119.00	15.00	10.00	19.00
..................................................................................................................TGACTAGATCCACACTCATTAT..................................................	22	1	129.00	20.00	40.00	22.00	47.00
..................................................................................................................TGACTAGATCCACACTCATTT...................................................	21	1	122.00	13.00	49.00	46.00	14.00
..................................................................AGTGAGTGAGGGTCCAGTGTTTC.................................................................................................	23	1	98.00	58.00	21.00	9.00	10.00
..................................................................................................................TGACTAGATCCACACTCCTT....................................................	20	1	65.00	0.00	5.00	53.00	7.00
..................................................................................................................TGACTAGATCCACACTCCTTA...................................................	21	1	50.00	0.00	3.00	9.00	38.00
..................................................................................................................TGACTAGATCCACACTCCT.....................................................	19	1	47.00	0.00	8.00	30.00	9.00
..................................................................................................................TGACTAGATCCACACTCATTAAAA................................................	24	1	46.00	6.00	1.00	2.00	37.00
...................................................................GTGAGTGAGGGTCCAGTGTTTC.................................................................................................	22	1	41.00	36.00	3.00	1.00	1.00
..................................................................AGTGAGTGAGGGTCCAGTGTTTCACC..............................................................................................	26	1	39.00	23.00	1.00	0.00	15.00
............................................................................................TT-GTTTGCT--TAAGTATTTG........................................................................	19	1	38.00	1.00	0.00	0.00	37.00
..................................................................................................................TGACTAGATCCACCCTCATTA...................................................	21	1	37.00	0.00	2.00	2.00	33.00
..................................................................................................................TGACTAGATCCACACTCATTAAAAA...............................................	25	1	34.00	7.00	2.00	0.00	25.00
..................................................................................................................TGACTAGATCCACACTCATTAAT.................................................	23	1	33.00	6.00	1.00	1.00	25.00
..................................................................AGTGAGTGAGGGTCCAGTGTTT..................................................................................................	22	1	29.00	14.00	8.00	3.00	4.00
...................................................................GTGAGTGAGGGTCCAGTGTTTCACC..............................................................................................	25	1	29.00	19.00	2.00	5.00	3.00
..................................................................AGTGAGTGAGGGTCCAGTGTTTCACAA.............................................................................................	27	1	28.00	23.00	0.00	2.00	3.00
..................................................................................................................TGACTAGATCCACACTCGTT....................................................	20	1	26.00	0.00	11.00	13.00	2.00
..................................................................................................................TGACTAGATCCACACTCAGT....................................................	20	1	25.00	0.00	12.00	13.00	0.00
..................................................................................................................TGACTAGATCCATACTCATT....................................................	20	1	22.00	0.00	8.00	13.00	1.00
..................................................................................................................TGACTAGATCCCCACTCATT....................................................	20	1	21.00	0.00	2.00	16.00	3.00
...................................................................GTGAGTGAGGGTCCAGTGTTT..................................................................................................	21	1	21.00	16.00	4.00	1.00	0.00
...................................................................GTGAGTGAGGGTCCAGTGTTTCACAA.............................................................................................	26	1	20.00	15.00	3.00	0.00	2.00
..................................................................................................................TGACTAGATCCACACTCATTAC..................................................	22	1	17.00	2.00	4.00	3.00	8.00
..................................................................................................................TGACTAGATCCCCACTCATTAAA.................................................	23	1	17.00	0.00	0.00	0.00	17.00
..................................................................AGTGAGTGAGGGTCCAGTGTTTCAA...............................................................................................	25	1	17.00	14.00	1.00	1.00	1.00
..................................................................................................................TGACTAGATCCACACTCGT.....................................................	19	1	17.00	0.00	8.00	8.00	1.00
..................................................................................................................TGACTACATCCACACTCATT....................................................	20	1	16.00	0.00	9.00	7.00	0.00
..................................................................................................................TGACTAGATCCACCCTCATT....................................................	20	1	16.00	0.00	5.00	11.00	0.00
..................................................................................................................CGACTAGATCCACACTCATT....................................................	20	1	15.00	4.00	5.00	5.00	1.00
..................................................................................................................TGACTAGATCCACACTCATTCA..................................................	22	1	15.00	1.00	2.00	4.00	8.00
..................................................................................................................TGACTAGATCCACACTCATTTT..................................................	22	1	14.00	2.00	4.00	7.00	1.00
..................................................................................................................TGACTGGATCCACACTCATT....................................................	20	1	14.00	1.00	6.00	6.00	1.00
..................................................................................................................TGAATAGATCCACACTCATT....................................................	20	1	14.00	1.00	8.00	5.00	0.00
..................................................................................................................TGACTAGATCCATACTCAT.....................................................	19	1	14.00	0.00	5.00	9.00	0.00
..................................................................................................................TGACTAGGTCCACACTCAT.....................................................	19	1	13.00	0.00	5.00	6.00	2.00
..................................................................................................................TGACTAGATCCACACTCATTAAAT................................................	24	1	13.00	0.00	0.00	0.00	13.00
..................................................................................................................TGGCTAGATCCACACTCATT....................................................	20	1	13.00	0.00	6.00	6.00	1.00
..................................................................................................................TGACTAGATCCACACTCATTACA.................................................	23	1	12.00	1.00	1.00	1.00	9.00
..................................................................................................................TGACTAGACCCACACTCATT....................................................	20	1	12.00	2.00	8.00	2.00	0.00
....................................................................TGAGTGAGGGTCCAGTGTTTCACA..............................................................................................	24	1	11.00	5.00	1.00	1.00	4.00
..................................................................AGTGAGTGAGGGTCCAGTGGTTCACA..............................................................................................	26	1	11.00	0.00	0.00	0.00	11.00
..................................................................AGTGAGTGAGGGTCCAGTGTTTCACT..............................................................................................	26	1	11.00	4.00	1.00	1.00	5.00
..................................................................................................................CGACTAGATCCACACTCAT.....................................................	19	1	11.00	0.00	7.00	3.00	1.00
..................................................................................................................TGACTAGGTCCACACTCATT....................................................	20	1	11.00	0.00	4.00	6.00	1.00
..................................................................................................................TGACTATATCCACACTCATT....................................................	20	1	11.00	1.00	3.00	7.00	0.00
..................................................................................................................TGACTAGATCCCCACTCAT.....................................................	19	1	11.00	0.00	4.00	6.00	1.00
..................................................................................................................TGACTAGATCCACGCTCATT....................................................	20	1	11.00	1.00	9.00	0.00	1.00
..................................................................................................................TGACTAGATCCACACTCATTTA..................................................	22	1	10.00	0.00	0.00	4.00	6.00
..................................................................................................................TGACTAGATCCGCACTCATT....................................................	20	1	10.00	1.00	2.00	1.00	6.00
..................................................................AGTGAGTGAGGGTCCAGTGT....................................................................................................	20	1	10.00	7.00	3.00	0.00	0.00
..................................................................................................................TGGCTAGATCCACACTCAT.....................................................	19	1	10.00	0.00	3.00	6.00	1.00
..................................................................................................................TGACTAGATCCACACTCATA....................................................	20	1	10.00	0.00	2.00	0.00	8.00
..................................................................................................................CGACTAGATCCACACTCATTA...................................................	21	1	10.00	0.00	2.00	3.00	5.00
..................................................................................................................TAACTAGATCCACACTCATT....................................................	20	1	10.00	1.00	2.00	6.00	1.00
..................................................................................................................TGACTAGAGCCACACTCAT.....................................................	19	1	9.00	0.00	5.00	4.00	0.00
..................................................................................................................TGACTAGATCCAAACTCATT....................................................	20	1	9.00	0.00	4.00	4.00	1.00
..................................................................................................................AGACTAGATCCACACTCATT....................................................	20	1	9.00	1.00	1.00	6.00	1.00
..................................................................................................................TGACTAGATCCACACTCAG.....................................................	19	1	9.00	0.00	7.00	1.00	1.00
..................................................................AGTGAGTGAGGGTCCAGTGTTTCCCA..............................................................................................	26	1	9.00	0.00	0.00	0.00	9.00
..................................................................................................................TGACTAGATCCACAATCATT....................................................	20	1	9.00	0.00	5.00	2.00	2.00
..................................................................................................................TGATTAGATCCACACTCATT....................................................	20	1	9.00	0.00	7.00	1.00	1.00
..................................................................................................................TGACTAGATCCCCACTCATTCA..................................................	22	1	8.00	0.00	0.00	0.00	8.00
..................................................................................................................TGACTAGATCCATACTCATTA...................................................	21	1	8.00	2.00	3.00	1.00	2.00
..................................................................................................................TGACTCGATCCACACTCAT.....................................................	19	1	8.00	0.00	4.00	4.00	0.00
..................................................................................................................AGACTAGATCCACACTCAT.....................................................	19	1	8.00	0.00	5.00	2.00	1.00
..................................................................................................................TGACTAGATCCACACTCATTAG..................................................	22	1	8.00	0.00	2.00	1.00	5.00
..................................................................................................................TGACTAGATCTACACTCAT.....................................................	19	1	8.00	0.00	3.00	5.00	0.00
..................................................................................................................TGACTAGATCCACACTCATG....................................................	20	1	8.00	0.00	7.00	1.00	0.00
..................................................................................................................TGACTAGATCCCCACTCATTA...................................................	21	1	8.00	0.00	1.00	3.00	4.00
..................................................................................................................TGACTAGATCTACACTCATT....................................................	20	1	8.00	1.00	3.00	2.00	2.00
..................................................................AGTGAGTGAGGGTCCAGTGTT...................................................................................................	21	1	8.00	4.00	3.00	0.00	1.00
..................................................................................................................TGACTCGATCCACACTCATT....................................................	20	1	8.00	0.00	1.00	7.00	0.00
..................................................................................................................TGACTAGATCCACACTCACT....................................................	20	1	8.00	1.00	3.00	3.00	1.00
..................................................................................................................TAACTAGATCCACACTCAT.....................................................	19	1	8.00	0.00	4.00	3.00	1.00
..................................................................................................................TGACTAGATCCACCCTCAT.....................................................	19	1	8.00	0.00	3.00	5.00	0.00
..................................................................AGTGAGTGAGGGTCCAGCGTTTCACA..............................................................................................	26	1	8.00	2.00	2.00	0.00	4.00
..................................................................................................................TGACTAGAGCCACACTCATT....................................................	20	1	8.00	0.00	5.00	3.00	0.00
..................................................................................................................GGACTAGATCCACACTCATT....................................................	20	1	7.00	3.00	2.00	2.00	0.00
..................................................................................................................TGACTAGCTCCACACTCATT....................................................	20	1	7.00	0.00	3.00	4.00	0.00
..................................................................................................................TGACTAGATCCACCCTCCTTA...................................................	21	1	7.00	0.00	0.00	0.00	7.00
..................................................................................................................TGACTAGATCCACAATCAT.....................................................	19	1	7.00	0.00	3.00	3.00	1.00
..................................................................................................................TGACTAGATCCACACTCAC.....................................................	19	1	7.00	0.00	6.00	1.00	0.00
..................................................................................................................TGACTAGATCCACACTAATT....................................................	20	1	7.00	0.00	4.00	3.00	0.00
..................................................................................................................TGACTAGATCCACACTCCTTAA..................................................	22	1	7.00	0.00	0.00	0.00	7.00
..................................................................................................................AGACTAGATCCACACTCATTAA..................................................	22	1	7.00	0.00	2.00	0.00	5.00
..................................................................................................................TGACTAGATCCACACTCTTT....................................................	20	1	7.00	0.00	5.00	2.00	0.00
..................................................................................................................TGACTAGATCCACACCCATT....................................................	20	1	7.00	0.00	2.00	4.00	1.00

droGri2

A------------TAAGGGAAGTGATTTA-----------TGGATAACCG---TATTACTGTTTTTAGTGGGTGAGGGTCCAGTGTTTCACATT-GTT--TA--TTTGTATTTGTGACTAGATCCACACTCATTAAAAACGGTAGTTCAATCAACA-------------------GT---------	Size	Hit Count	Total Norm	V109 Male body
..................................................................................................................TGACTAGATCCACACTCATT....................................................	20	1	383.00	383.00
..................................................................AGTGGGTGAGGGTCCAGTGTTTCACA..............................................................................................	26	1	113.00	113.00
..................................................................................................................TGACTAGATCCACACTCATTA...................................................	21	1	90.00	90.00
..................................................................................................................TGACTAGATCCACACTCATTAA..................................................	22	1	49.00	49.00
..................................................................AGTGGGTGAGGGTCCAGTGTTTCA................................................................................................	24	1	18.00	18.00
..................................................................................................................TGACTAGATCCACACTCCTT....................................................	20	1	9.00	9.00
..................................................................................................................TGACTAGATCCACACTCAT.....................................................	19	1	7.00	7.00
..................................................................AGTGGGTGAGGGTCCAGTGTTTCAC...............................................................................................	25	1	5.00	5.00
...................................................................GTGGGTGAGGGTCCAGTGTTTCACA..............................................................................................	25	1	5.00	5.00
..................................................................................................................TGCCTAGATCCACACTCATT....................................................	20	1	4.00	4.00
..................................................................AGTGGGTGAGGGTCCAGAGTTTCACA..............................................................................................	26	1	4.00	4.00
..................................................................................................................TGACTAGACCCACACTCATT....................................................	20	1	3.00	3.00
..................................................................................................................TGACTAGAACCACACTCATTA...................................................	21	1	3.00	3.00
..................................................................................................................TGACTAGATCCACACTCGTT....................................................	20	1	3.00	3.00
..................................................................AGTGGGTGAGGGTCCAGTGTTT..................................................................................................	22	1	3.00	3.00
..................................................................AGTGGGTGAGGGTCCAGTGTTTCACAA.............................................................................................	27	1	3.00	3.00
..................................................................................................................TGACTAGATCCACACTCTTT....................................................	20	1	3.00	3.00
..................................................................................................................TGTCTAGATCCACACTCATT....................................................	20	1	3.00	3.00
..................................................................AGAGGGTGAGGGTCCAGTGTTTCACA..............................................................................................	26	1	2.00	2.00
..................................................................AGTGGGTGAGGGTCCAGTGTTTGACA..............................................................................................	26	1	2.00	2.00
..................................................................AGTGGGTGAGGGTCCAGTGTTTCACAT.............................................................................................	27	1	2.00	2.00
..................................................................................................................TGACTACATCCACACTCATT....................................................	20	1	2.00	2.00
..................................................................................................................TGACTAGATCCACACTCGTTA...................................................	21	1	2.00	2.00
..................................................................................................................TGACTAGAACCACACTCATT....................................................	20	1	2.00	2.00
..................................................................................................................TGGCTAGATCCACACTCATT....................................................	20	1	2.00	2.00
..................................................................................................................TGACTGGATCCACACTCATT....................................................	20	1	2.00	2.00
..................................................................AGTGGGTGAGGGTCCAGTGT....................................................................................................	20	1	2.00	2.00
..................................................................................................................TGACTAAATCCACACTCATT....................................................	20	1	2.00	2.00
..................................................................................................................TGACTAGATCCACACTCATTAAAA................................................	24	1	1.00	1.00
..................................................................................................................TGACTAGATCCACACTCATTAC..................................................	22	1	1.00	1.00
..................................................................AGTGGGTGAGGGTCCAGCGTTTCAC...............................................................................................	25	1	1.00	1.00
..................................................................AGTGGGCGAGGGTCCAGTGCTTCACA..............................................................................................	26	1	1.00	1.00
..................................................................................................................TGACTAGATCxxCACTCATTA...................................................	19	1	1.00	1.00
..................................................................AGTGGGTGAGGGTCCAGTGTTTGA................................................................................................	24	1	1.00	1.00
..................................................................................................................TGACTAGATCCGCACTCATTT...................................................	21	1	1.00	1.00
..................................................................................................................TGACTCGATCCACACTCATTA...................................................	21	1	1.00	1.00
..................................................................................................................TGACTATATCCACACTCATT....................................................	20	1	1.00	1.00
..................................................................................................................TGTCTAGATCCACACTCATTA...................................................	21	1	1.00	1.00
..................................................................................................................TGCCTAGATCCACACTCATTAA..................................................	22	1	1.00	1.00
..................................................................AGTGGGTGAGGGTCCAGTGCTTCA................................................................................................	24	1	1.00	1.00
...................................................................GTGGGTGAGGGTCCAGTGTTTCACT..............................................................................................	25	1	1.00	1.00
..................................................................ACTGGGTGAGGGTCCAGTGTTTCACA..............................................................................................	26	1	1.00	1.00
..................................................................................................................TGACTAGCTCCACACTCATT....................................................	20	1	1.00	1.00
..................................................................................................................CGACTAGATCCACACTCATT....................................................	20	1	1.00	1.00
..................................................................AGTGGGTGAGGGTCCACTGTTTCACA..............................................................................................	26	1	1.00	1.00
..................................................................................................................TGACTAGATCCACACTCCTTAA..................................................	22	1	1.00	1.00
..................................................................................................................TGACTAGATCCACACTCATTAAA.................................................	23	1	1.00	1.00
..................................................................AGTGGGTGAGGGTCCAGTGTTTC.................................................................................................	23	1	1.00	1.00
..................................................................AGTGAGTGAGGGTCCAGTGTTTCAC...............................................................................................	25	1	1.00	1.00
..................................................................AGTGGGTGAGGGTCCAGTG.....................................................................................................	19	1	1.00	1.00
..................................................................................................................TGACTAGATCCACACTCATTTA..................................................	22	1	1.00	1.00
...................................................................GTGAGTGAGGGTCCAGTGTTTCACA..............................................................................................	25	1	1.00	1.00
...................................................................GTGAGTGAGGGTCCAGTGTTTCAC...............................................................................................	24	1	1.00	1.00
..................................................................................................................TGACTAGAGCCACACTCATTAA..................................................	22	1	1.00	1.00
..................................................................................................................TGACTAGATCCAAACTCATT....................................................	20	1	1.00	1.00
..................................................................................................................TGACTAGATCCACACTCATTT...................................................	21	1	1.00	1.00
...................................................................GTGGGTGAGGGTCCAGTATTTCACA..............................................................................................	25	1	1.00	1.00
...................................................................GTGGGTGAGGGTCCAGTGTTTCA................................................................................................	23	1	1.00	1.00
..................................................................AGTGGGTGGGGGTCCAGTGTTTCACA..............................................................................................	26	1	1.00	1.00
..................................................................................................................TGACTAGATCCACACTCATTAT..................................................	22	1	1.00	1.00
..................................................................................................................TGACTAGATACACACTCATT....................................................	20	1	1.00	1.00
..................................................................AGTGGGTGAGGGTCCAGCGTTTCACA..............................................................................................	26	1	1.00	1.00
..................................................................ACTGGGTGAGGGTCCAGTGT....................................................................................................	20	1	1.00	1.00
..................................................................................................................TGACTAGATCCACACTATT.....................................................	19	1	1.00	1.00
..................................................................AGTGGGTGAGGGTCCAGGGTTTCACA..............................................................................................	26	1	1.00	1.00
..................................................................AGTGGGTGAGGGTCCAGTCTTTCACA..............................................................................................	26	1	1.00	1.00
..................................................................................................................TGACTAGATCCACACTCATTAAT.................................................	23	1	1.00	1.00
..................................................................................................................TGACTGGATCCACACTCATTAA..................................................	22	1	1.00	1.00
..................................................................AGTGGGTGAGGGTCCAGAGTTTCA................................................................................................	24	1	1.00	1.00
..................................................................CGTGGGTGTGGGTCCAGTGTTTCACA..............................................................................................	26	1	1.00	1.00
..................................................................................................................TGACTAGATCCACACTCATTC...................................................	21	1	1.00	1.00
..................................................................................................................TGACTAGATCCACACTCA......................................................	18	1	1.00	1.00
..................................................................AGTGGGTGACGGTCCAGTGTTTCACA..............................................................................................	26	1	1.00	1.00
..................................................................AGTGGGTGAGGGTCCAGTGTTTTACA..............................................................................................	26	1	1.00	1.00
..................................................................................................................TGACTAGATCCACCCTCATT....................................................	20	1	1.00	1.00
..................................................................................................................TGACTACATCCACACTCATTA...................................................	21	1	1.00	1.00
..................................................................AGTGGGTGCGGGTCCAGTGTTTCAC...............................................................................................	25	1	1.00	1.00
..................................................................................................................TGACTAGACCCACACTCATTAA..................................................	22	1	1.00	1.00
..................................................................AGTGGGTGAGGGTCCAGTA.....................................................................................................	19	1	1.00	1.00
..................................................................................................................TGAATAGATCCACACTCATT....................................................	20	1	1.00	1.00
..................................................................AGTGAGTGAGGGTCCAGAGTTTCA................................................................................................	24	1	1.00	1.00
..................................................................AGTGGGTGAGGGTCCAGTGTTTTT................................................................................................	24	1	1.00	1.00

Generated: 04/20/2012 at 05:14:36 EDT

dme-mir-279

chr3R:25041307-25041406 +

Known_mirbase

intergenic

20-way Fast Statistical Aligner (FSA) re-alignment

Visually pleasing best hits from LASTZ and MAF

Legend

Re-alignment after removal of non-confident orthologs

20-way Secondary Structure

Small RNA-seq read pileup