dme-mir-278- 12- and 20-way alignments

dme-mir-278	chr2R:11544571-11544668 +	Known_mirbase
[View on miRBase]	[View on UCSC Genome Browser {Cornell Mirror}]	antisense_to_3pUTR

Legend:

   mature strand at position 11544627-11544648
   star strand at position 11544588-11544610
   mutations
   read mismatches
   coordinate mismatch (possible incorrect ortholog)

12-way Fast Statistical Aligner re-alignment (From MAFs)

Species	Coordinate	Alignment
dm3	chr2R:11544556-11544683 +	T--GATACGAG---------------------------ACCATGGTAATGGTACGGTGCGACCGGATGATGGTTCACAACGACCGT---GTCATTTAAACGGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAACGATTTATCA----------------GTGTCCG--T
droSim1	chr2R:10277194-10277321 +	T--GATACGAG---------------------------ACCATGGTAATGGTACGGTGCGACCGGATGATGGTTCACAACGACCGT---GTCCTTTAAACGGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAACGATTTATCA----------------GTGTCCG--T
droSec1	super_1:9037606-9037733 +	T--GATACGAG---------------------------ACCATAGTAATGGTACGGTGCGACCGGATGATGGTTCACAACGACCGT---GTCCTTTAAACGGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAACGATTTATCA----------------GTGTCCG--T
droYak2	chr2R:17445962-17446088 -	T--GATACGAC---------------------------ACCATGGTAATGGTACGGTGCGACCGGATGATGGTTCACAACGACCGT---GTCCTTTAAACGGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAACGATTTATCA----------------GTGTCCG---
droEre2	scaffold_4845:14318899-14319025 -	T--GATACGAG---------------------------ACCATGGTAATGGTACGGTGCGACCGGATGATGGTTCACAACGACCGT---GTCCTTTAAACGGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAACGATTTATCA----------------GTGTCCG---
droAna3	scaffold_13266:12641317-12641435 -	TATG-----------------------------------TAACGGTAATGGTACGGTGCGACCGGATGATGGTTCACAACGACCGT---GTCCTTCGAACGGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAGCGATTTATCA-------------------TCCG--G
dp4	chr3:19640883-19641018 -	T--G-----------------------------------CAACGGTAATGGTACGGTGCGACCGGACGATGGTTCACAACGACCGT---GTCTCTTAAACTGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAGCGATTTATCATCATCGTCGCGCCCCAGTGCTCG--T
droPer1	super_37:642280-642415 -	T--G-----------------------------------CAACGGTAATGGTACGGTGCGACCGGACGATGGTTCACAACGACCGT---GTCTCTTAAACTGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAGCGATTTATCATCATCGTCGCGCCCCAGTGCTCG--T
droWil1	scaffold_181009:1555700-1555856 -	T--GTAACGAGTTAAAAAAAAATAAGGGGAGATCCCCCATAATGGTAATGGTACGGTGCGACCGGATGACGGTTCACAACGACCGT---GTCAATTTTACTGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAACGATTTATCA----------------TAATCTCTAG
droVir3	scaffold_12875:6427524-6427640 -	T--G---------------------------------------GTTTATGGTACGGTGCGACCGGATGATGGTTCACAACGACCGTGCA-TACTTTTAACTGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAACGATTTATCA----------------A-ATCAG--A
droMoj3	scaffold_6496:23589388-23589508 +	T--G---------------------------------------GTTTATGGTACGGTGCGACCGGATGATGGTTCACAACGACCGTACAGTTTTTTCAACGGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAACGATTTATCAGCA-------------A-ATCAG--A
droGri2	scaffold_15112:1314106-1314223 -	T--GGTC--------------------------------------TGATGGTACGGTGCGACCGGATGACGGTTCACAACGACCGTGCT-TATTTTTAACTGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAGCGATTTATCA----------------A-ATCAG--T

20-way Fast Statistical Aligner re-alignment (Top LASTZ hits)

Species	Coordinate	Lastz Id	Alignment
dm3	chr2R:11544556-11544683 +	NA	TGATACGAG---------------------------ACC--ATGGTAATGGTACGGTGCGACCGGATGATGGTTCACAACGACCGT---GTCATTTAAACGGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAACGATTTATCAG---------TGTC---------C-------GT
droSim1	chr2R:10277194-10277321 +	1	TGATACGAG---------------------------ACC--ATGGTAATGGTACGGTGCGACCGGATGATGGTTCACAACGACCGT---GTCCTTTAAACGGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAACGATTTATCAG---------TGTC---------C-------GT
droSec1	super_1:9037606-9037733 +	1	TGATACGAG---------------------------ACC--ATAGTAATGGTACGGTGCGACCGGATGATGGTTCACAACGACCGT---GTCCTTTAAACGGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAACGATTTATCAG---------TGTC---------C-------GT
droYak2	chr2R:17445962-17446088 -	1	TGATACGAC---------------------------ACC--ATGGTAATGGTACGGTGCGACCGGATGATGGTTCACAACGACCGT---GTCCTTTAAACGGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAACGATTTATCAG---------TGTC---------C-------G-
droEre2	scaffold_4845:14318899-14319025 -	1	TGATACGAG---------------------------ACC--ATGGTAATGGTACGGTGCGACCGGATGATGGTTCACAACGACCGT---GTCCTTTAAACGGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAACGATTTATCAG---------TGTC---------C-------G-
droEug1	scf7180000409672:431496-431624 +	1	CGATACCGG---------------------------TC-ACATGGTAATGGTACGGTGCGACCGGATGATGGTTCACAACGACCGT---GTCCTTTAAACTGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAACGATTTATCAG---------TGTC---------C-------GT
droBia1	scf7180000302292:4120087-4120198 -	1	--------------------------------------------GTAATGGTACGGTGCGACCGGATGATGGTTCACAACGACCGT---GTCCTTTAAACGGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAGCGATTTATCAG---------TGTC---------C---------
droTak1	scf7180000415241:147514-147629 -	1	--------------------------------------------GTAATGGTTCGGTGCGACCGGATGATGGTTCACAACGACCGT---GTTCTTTAAACGGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAACGATTTATCAG---------TGTC---------CAGT-----G
droEle1	scf7180000491107:511708-511821 +	1	--------------------------------------------GTAATGGTTTGGTGCGACCGGATGATGGTTCACAACGACCGT---GTCCTTTAAACAGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAGCGATTTATCAG---------TGTC---------C-------GC
droRho1	scf7180000779911:581681-581805 -	1	--ATA-GTG---------------------------GCA--ATGGTAATGGTACGGTGCGACCGGATGATGGTTCACAACGACCGT---GTCCTTTAAACGGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAGCGATTTATCAG---------TGTC---------C-------GT
droFic1	scf7180000453809:33529-33658 +	1	CGAGATACG---------------------------GCCATGTGGTAATGGTACGGTGCGACCGGATGATGGTTCACAACGACCGT---GTCCTTTAAACGGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAGCGATTTATCAG---------TGTC---------C-------AT
droKik1	scf7180000302682:1699625-1699738 +	1	-----------------------------------------ATTGTAATGGTATGGTGCGACCGGATGATGGTTCACAACGACCGT---GTCCTTTCAACGGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAGCGATTTATCAG---------TGTC-------------------
droAna3	scaffold_13266:12641317-12641435 -	1	T--AT-G------------------------------TA--ACGGTAATGGTACGGTGCGACCGGATGATGGTTCACAACGACCGT---GTCCTTCGAACGGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAGCGATTTATCA------------TC---------C-------GG
droBip1	scf7180000396372:139128-139246 -	1	T--AT-G------------------------------TA--ACGGTAATGGTACGGTGCGACCGGATGATGGTTCACAACGACCGT---GTCCTTTGAACGGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAGCGATTTATCA------------TC---------C-------GG
dp4	chr3:19640883-19641018 -	2	TG-----------------------------------CA--ACGGTAATGGTACGGTGCGACCGGACGATGGTTCACAACGACCGT---GTCTCTTAAACTGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAGCGATTTATCAT---------CATCGTCGCGCCCCAGTGCTCGT
droPer1	super_37:642280-642415 -	2	TG-----------------------------------CA--ACGGTAATGGTACGGTGCGACCGGACGATGGTTCACAACGACCGT---GTCTCTTAAACTGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAGCGATTTATCAT---------CATCGTCGCGCCCCAGTGCTCGT
droWil1	scaffold_181009:1555699-1555856 -	2	TGTAACGAGTTAAAAAAAAATAAGGGGAGATCCCCCATA--ATGGTAATGGTACGGTGCGACCGGATGACGGTTCACAACGACCGT---GTCAATTTTACTGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAACGATTTATCAT---------AATC---------T----CTAGG
droVir3	scaffold_12875:6427523-6427640 -	2	TG-----------------------------------------GTTTATGGTACGGTGCGACCGGATGATGGTTCACAACGACCGTGCA-TACTTTTAACTGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAACGATTTATCAA---------ATCA---------G-------AT
droMoj3	scaffold_6496:23589388-23589515 +	1	TG-----------------------------------------GTTTATGGTACGGTGCGACCGGATGATGGTTCACAACGACCGTACAGTTTTTTCAACGGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAACGATTTATCAGCAAATCAGATATC---------A-------GC
droGri2	scaffold_15112:1314106-1314223 -	2	TGGTC----------------------------------------TGATGGTACGGTGCGACCGGATGACGGTTCACAACGACCGTGCT-TATTTTTAACTGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAGCGATTTATCAA----------ATC---------A-------GT

[View All Possible Orthologs]

Original 12-way multiz alignment with reads super-imposed

Species

Alignment

dm3

T--GATACGAG---------------------------ACCATGGTAATGGTACGGTGCGACCGGATGATGGTTCACAACGACCGT---GTCATTTAAACGGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAACGATTTATCA----------------GTGTCCG--T

Size

Hit Count

Total Norm

droSim1

T--GATACGAG---------------------------ACCATGGTAATGGTACGGTGCGACCGGATGATGGTTCACAACGACCGT---GTCCTTTAAACGGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAACGATTTATCA----------------GTGTCCG--T	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
.......................................................................................................TCGGTGGGACTTTCGTCCGTT......................................................	21	1	41770.00	1.00	36051.00	5610.00	108.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTT.....................................................	22	1	10899.00	4.00	8973.00	1810.00	112.00
.............................................................CCGGATGATGGTTCACAACGACC..............................................................................................	23	1	4615.00	68.00	3700.00	577.00	270.00
.......................................................................................................TCGGTGGGACTTTCGTCCGT.......................................................	20	1	3452.00	0.00	2957.00	489.00	6.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTC......................................................	21	1	1141.00	0.00	1011.00	125.00	5.00
.......................................................................................................TCGGTGGGACTTTCGTCCG........................................................	19	1	953.00	0.00	831.00	119.00	3.00
.......................................................................................................TCGGTGGGACTTTCTTCCGTT......................................................	21	1	827.00	0.00	730.00	89.00	8.00
.............................................................CCGGATGATGGTTCACAACG.................................................................................................	20	1	788.00	0.00	658.00	129.00	1.00
.......................................................................................................TCGGTGGGACTTTCGTCCGG.......................................................	20	1	520.00	0.00	424.00	94.00	2.00
.......................................................................................................TCGGTGGGACTTTCGTCCGC.......................................................	20	1	443.00	0.00	398.00	45.00	0.00
.......................................................................................................TCGGTGGGACTTTCxTCCGTT......................................................	20	1	421.00	0.00	386.00	34.00	1.00
.......................................................................................................TCGGTGGGACTTTCCTCCGTT......................................................	21	1	356.00	0.00	316.00	35.00	5.00
.............................................................CCGGATGATGGTTCACAACGAC...............................................................................................	22	1	253.00	3.00	205.00	42.00	3.00
.......................................................................................................TCGGTGGGACTTTCGTCC.........................................................	18	1	239.00	0.00	208.00	30.00	1.00
.............................................................CCGGATGATGGTTCACAACGACA..............................................................................................	23	1	236.00	0.00	205.00	30.00	1.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTC.....................................................	22	1	204.00	0.00	178.00	25.00	1.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTG......................................................	21	1	134.00	0.00	110.00	23.00	1.00
.............................................................CCGGATGATTGTTCACAACGACC..............................................................................................	23	1	112.00	0.00	94.00	4.00	14.00
.............................................................CCGGATGATGGTTCACAACGA................................................................................................	21	1	102.00	0.00	87.00	15.00	0.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTGG.....................................................	22	1	94.00	0.00	73.00	18.00	3.00
.......................................................................................................TCGGTGGGACTTTCGGCCGTT......................................................	21	1	84.00	0.00	69.00	15.00	0.00
.............................................................CCGGATGATGGTTCACAACGACT..............................................................................................	23	1	83.00	0.00	70.00	13.00	0.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTTT....................................................	23	1	82.00	0.00	67.00	15.00	0.00
.......................................................................................................TCGGTGGGGCTTTCGTCCGTT......................................................	21	1	80.00	0.00	68.00	11.00	1.00
.............................................................CCGGATGATGTTTCACAACGACC..............................................................................................	23	1	76.00	0.00	63.00	4.00	9.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTA......................................................	21	1	72.00	0.00	67.00	5.00	0.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTTC....................................................	23	1	60.00	0.00	55.00	5.00	0.00
.......................................................................................................TCTGTGGGACTTTCGTCCGTT......................................................	21	1	60.00	0.00	51.00	9.00	0.00
.......................................................................................................TCGGGGGGACTTTCGTCCGTT......................................................	21	1	56.00	0.00	48.00	8.00	0.00
.............................................................CCGGACGATGGTTCACAACGACC..............................................................................................	23	1	54.00	0.00	52.00	1.00	1.00
.............................................................CCGGATGATGGTTCACAACGACCT.............................................................................................	24	1	53.00	0.00	46.00	5.00	2.00
.............................................................CCGGATGATCGTTCACAACGACC..............................................................................................	23	1	50.00	0.00	44.00	2.00	4.00
.............................................................CCGGATGATxGTTCACAACGACC..............................................................................................	22	1	49.00	0.00	34.00	3.00	12.00
.......................................................................................................TCGGTTGGACTTTCGTCCGTT......................................................	21	1	48.00	0.00	41.00	7.00	0.00
.......................................................................................................TCGGTGGGACTTTCATCCGTT......................................................	21	1	48.00	0.00	43.00	4.00	1.00
.......................................................................................................TCGGTGGGACTTTCGTCCGCT......................................................	21	1	46.00	0.00	37.00	9.00	0.00
.......................................................................................................TCGGTGGGACTTTCGTCCGGT......................................................	21	1	42.00	0.00	32.00	9.00	1.00
.......................................................................................................TCGGTGGGACTTTTGTCCGTT......................................................	21	1	38.00	0.00	29.00	9.00	0.00
.......................................................................................................TCGGTGGGACTTTCTTCCGTTT.....................................................	22	1	37.00	0.00	30.00	6.00	1.00
.......................................................................................................TCGGTGGGACTTTCGCCCGTT......................................................	21	1	33.00	0.00	28.00	5.00	0.00
.......................................................................................................TCGGCGGGACTTTCGTCCGTT......................................................	21	1	32.00	0.00	28.00	4.00	0.00
.......................................................................................................TCGGTGGGCCTTTCGTCCGTT......................................................	21	1	29.00	0.00	27.00	2.00	0.00
.......................................................................................................TCGGTGGGACTTTCGTCCGA.......................................................	20	1	28.00	0.00	21.00	7.00	0.00
.......................................................................................................TCGGTGGGACCTTCGTCCGTT......................................................	21	1	27.00	0.00	24.00	3.00	0.00
.......................................................................................................TCGGTxxGACTTTCGTCCGTT......................................................	19	1	26.00	0.00	23.00	3.00	0.00
.......................................................................................................TTGGTGGGACTTTCGTCCGTT......................................................	21	1	23.00	0.00	18.00	4.00	1.00
.......................................................................................................TCGGTGGGACxTTCCTCCGTT......................................................	20	1	23.00	0.00	20.00	3.00	0.00
.......................................................................................................TCGGTGGGACTTTCGTCTGTT......................................................	21	1	23.00	0.00	17.00	6.00	0.00
.......................................................................................................TCGGTGGGACTTTCGTCCTTTT.....................................................	22	1	23.00	0.00	19.00	3.00	1.00
.......................................................................................................TCGGTGGTACTTTCGTCCGTT......................................................	21	1	23.00	0.00	20.00	3.00	0.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTA.....................................................	22	1	22.00	0.00	17.00	5.00	0.00
.......................................................................................................TCGGTxGGACTTTCGTCCGTT......................................................	20	1	22.00	0.00	20.00	2.00	0.00
.......................................................................................................TCGGTGGGACTTTCxTCCGTTT.....................................................	21	1	21.00	0.00	18.00	2.00	1.00
.......................................................................................................TCTGTGGGACTTTCGTCCGTTT.....................................................	22	1	21.00	0.00	21.00	0.00	0.00
.........................................................................................................GGTGGGACTTTCGTCCGTT......................................................	19	1	20.00	0.00	17.00	3.00	0.00
.......................................................................................................TCGGTGGGACTTTxTTCCGTT......................................................	20	1	20.00	0.00	17.00	3.00	0.00
.......................................................................................................TCGGTGGGACTTTCTTCCGT.......................................................	20	1	20.00	0.00	20.00	0.00	0.00
.......................................................................................................TCGGTGGGACTTTCGGCCGTTT.....................................................	22	1	20.00	0.00	16.00	4.00	0.00
......................................................................................................CTCGGTGGGACTTTCGTCCGTT......................................................	22	1	19.00	0.00	17.00	2.00	0.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTTA....................................................	23	1	18.00	0.00	13.00	4.00	1.00
.......................................................................................................TCCGTGGGACTTTCGTCCGTT......................................................	21	1	17.00	0.00	17.00	0.00	0.00
.............................................................CCGGATTATGGTTCACAACGACC..............................................................................................	23	1	17.00	0.00	13.00	2.00	2.00
.......................................................................................................TCGGTGGGACTTTCGTTCGTT......................................................	21	1	17.00	0.00	15.00	2.00	0.00
..............................................................CGGATGATGGTTCACAACGACC..............................................................................................	22	1	16.00	0.00	14.00	1.00	1.00
.......................................................................................................TCGGTGTGACTTTCGTCCGTT......................................................	21	1	16.00	0.00	10.00	6.00	0.00
.......................................................................................................TCGGTGGGACTTTCGTCT.........................................................	18	1	16.00	0.00	10.00	6.00	0.00
.......................................................................................................TCGGTGGGACTTTCTTCCGTC......................................................	21	1	15.00	0.00	13.00	2.00	0.00
.......................................................................................................TCGGTGCGACTTTCGTCCGTT......................................................	21	1	15.00	0.00	14.00	1.00	0.00
.............................................................CCGGATGATTGTTCACAACGAC...............................................................................................	22	1	15.00	0.00	13.00	2.00	0.00
........................................................................................................CGGTGGGACTTTCGTCCGTT......................................................	20	1	14.00	0.00	12.00	2.00	0.00
.......................................................................................................TCGGTGGGATTTTCGTCCGTT......................................................	21	1	14.00	0.00	13.00	1.00	0.00
.......................................................................................................TCGGTGAGACTTTCGTCCGTT......................................................	21	1	14.00	0.00	12.00	2.00	0.00
.......................................................................................................TCGGTGGGACTTTCGTCCGGTT.....................................................	22	1	13.00	0.00	9.00	4.00	0.00
.......................................................................................................TCGTTGGGACTTTCGTCCGTT......................................................	21	1	13.00	0.00	11.00	2.00	0.00
.......................................................................................................CCGGTGGGACTTTCGTCCGTT......................................................	21	1	13.00	0.00	12.00	0.00	1.00
.......................................................................................................TCGGTGGGACTTTCxTCCGT.......................................................	19	1	13.00	0.00	12.00	1.00	0.00
.............................................................CCGGATGATGCTTCACAACGACC..............................................................................................	23	1	13.00	0.00	9.00	1.00	3.00
.......................................................................................................TCGGTGGGACTTTCCTCCGTC......................................................	21	1	13.00	0.00	11.00	1.00	1.00
.......................................................................................................TCGGTCGGACTTTCGTCCGTT......................................................	21	1	12.00	0.00	12.00	0.00	0.00
.......................................................................................................TCGGAGGGACTTTCGTCCGTT......................................................	21	1	12.00	0.00	11.00	1.00	0.00
.......................................................................................................TCGGTGGGACTTTCGTCCATT......................................................	21	1	12.00	0.00	10.00	2.00	0.00
.......................................................................................................TCGGTGGGGCTTTCGTCCGTTT.....................................................	22	1	12.00	0.00	10.00	2.00	0.00
.......................................................................................................TCGGTGGGACCTTCGTCCGTTT.....................................................	22	1	11.00	0.00	10.00	1.00	0.00
.......................................................................................................TCGGTTGGACTTTCGTCCGTTT.....................................................	22	1	11.00	0.00	8.00	3.00	0.00
.......................................................................................................TCGGTGGGACTTTCCTCCGT.......................................................	20	1	11.00	0.00	10.00	0.00	1.00
.............................................................CCGGATGATGGTTCACAACGACG..............................................................................................	23	1	11.00	0.00	9.00	2.00	0.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTG.....................................................	22	1	11.00	0.00	8.00	3.00	0.00
.......................................................................................................TCGGTGGGACTTTCCTCCGTTT.....................................................	22	1	10.00	0.00	9.00	1.00	0.00
......................................................................................................GTCGGTGGGACTTTCGTCCGTT......................................................	22	1	10.00	0.00	10.00	0.00	0.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTCT.....................................................	22	1	10.00	0.00	10.00	0.00	0.00
.......................................................................................................TCGGTGGGACTTTCGTCCT........................................................	19	1	9.00	0.00	7.00	2.00	0.00
.......................................................................................................TCGGTGGGACTTTCGTCTT........................................................	19	1	9.00	0.00	9.00	0.00	0.00
.......................................................................................................TCAGTGGGACTTTCGTCCGTT......................................................	21	1	9.00	0.00	5.00	4.00	0.00
.............................................................CCGGATGATGGTTCACAACGG................................................................................................	21	1	9.00	0.00	8.00	1.00	0.00
.......................................................................................................TCGGTGGCACTTTCGTCCGTT......................................................	21	1	9.00	0.00	7.00	2.00	0.00
.......................................................................................................TCGATGGGACTTTCGTCCGTT......................................................	21	1	9.00	0.00	7.00	2.00	0.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTTAC...................................................	24	1	8.00	0.00	7.00	1.00	0.00
.......................................................................................................TCGGTGGGACTTTCGCCCGTTT.....................................................	22	1	8.00	0.00	6.00	1.00	1.00
.......................................................................................................TCGGTGGGACTTCCGTCCGTT......................................................	21	1	8.00	0.00	6.00	2.00	0.00
.......................................................................................................TCGGTGGGACTTTAGTCCGTT......................................................	21	1	8.00	0.00	7.00	1.00	0.00
.......................................................................................................TCGGTGGGACTTTCGTCCTTT......................................................	21	1	8.00	0.00	8.00	0.00	0.00

droSec1

T--GATACGAG---------------------------ACCATAGTAATGGTACGGTGCGACCGGATGATGGTTCACAACGACCGT---GTCCTTTAAACGGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAACGATTTATCA----------------GTGTCCG--T	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
.......................................................................................................TCGGTGGGACTTTCGTCCGTTT.....................................................	22	1	1021.00	255.00	147.00	619.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTT......................................................	21	1	579.00	28.00	8.00	543.00
.............................................................CCGGATGATGGTTCACAACGACC..............................................................................................	23	1	385.00	40.00	118.00	227.00
.............................................................CCGGATGATGGTTCACAACGAC...............................................................................................	22	1	41.00	7.00	4.00	30.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTTT....................................................	23	1	30.00	12.00	0.00	18.00
.............................................................CCGGATGATGGTTCACAACG.................................................................................................	20	1	19.00	6.00	0.00	13.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTA.....................................................	22	1	18.00	2.00	0.00	16.00
.............................................................CCGGATGATGGTTCACAACGA................................................................................................	21	1	11.00	5.00	0.00	6.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTTA....................................................	23	1	11.00	2.00	0.00	9.00
.......................................................................................................TTGGTGGGACTTTCGTCCGTTT.....................................................	22	1	9.00	0.00	7.00	2.00
.........................................................................................................GGTGGGACTTTCGTCCGTTT.....................................................	20	1	6.00	2.00	1.00	3.00
.......................................................................................................TCGGTxGGACTTTCGTCCGTTT.....................................................	21	1	6.00	1.00	1.00	4.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTC.....................................................	22	1	6.00	3.00	1.00	2.00
.......................................................................................................TCGGTGGGACTTTCGTCCGT.......................................................	20	1	6.00	1.00	0.00	5.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTTTT...................................................	24	1	5.00	1.00	0.00	4.00
.......................................................................................................TCGGTGGGACTTTCGTTCGTTT.....................................................	22	1	5.00	1.00	3.00	1.00
.............................................................CCGGATGATGGTTCACAACGACA..............................................................................................	23	1	5.00	0.00	0.00	5.00
.......................................................................................................TCGGTGGGACTTTCGTCCCTTT.....................................................	22	1	4.00	4.00	0.00	0.00
.......................................................................................................TCGGTGGGACTTTCGTCTGTT......................................................	21	1	4.00	2.00	0.00	2.00
.......................................................................................................TCGGTGGGACTTTCGTCCTTTT.....................................................	22	1	3.00	2.00	0.00	1.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTTAA...................................................	24	1	3.00	2.00	0.00	1.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTTC....................................................	23	1	3.00	1.00	0.00	2.00
.......................................................................................................TCGGTAGGACTTTCGTCCGTTT.....................................................	22	1	3.00	0.00	0.00	3.00
.......................................................................................................TCGGTxGGACTTTCGTCCGTT......................................................	20	1	3.00	0.00	0.00	3.00
.......................................................................................................TCGGTGGGACTTTCGTCCGAT......................................................	21	1	3.00	0.00	0.00	3.00
.............................................................CCGGATGATGGTTCACAACGACCT.............................................................................................	24	1	3.00	0.00	0.00	3.00
........................................................................................................TCGTGGGACTTTCGTCCGTTT.....................................................	21	1	3.00	0.00	1.00	2.00
.......................................................................................................TCGGTGGGACTTTCGTCCATTT.....................................................	22	1	3.00	2.00	0.00	1.00

droYak2

T--GATACGAC---------------------------ACCATGGTAATGGTACGGTGCGACCGGATGATGGTTCACAACGACCGT---GTCCTTTAAACGGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAACGATTTATCA----------------GTGTCCG---	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
.......................................................................................................TCGGTGGGACTTTCGTCCGTT......................................................	21	1	5052.00	0.00	423.00	6.00	593.00	4030.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTT.....................................................	22	1	3233.00	7.00	565.00	151.00	726.00	1784.00
.............................................................CCGGATGATGGTTCACAACGACC..............................................................................................	23	1	1064.00	42.00	16.00	23.00	29.00	954.00
.......................................................................................................TCGGTGGGACTTTCGTCCGT.......................................................	20	1	261.00	0.00	11.00	2.00	15.00	233.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTC......................................................	21	1	124.00	0.00	0.00	0.00	0.00	124.00
.......................................................................................................TCGGTGGGCCTTTCGTCCGTT......................................................	21	1	93.00	0.00	1.00	0.00	2.00	90.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTTT....................................................	23	1	91.00	0.00	22.00	8.00	36.00	25.00
.......................................................................................................TCGGTGGGACTTTCGTCCG........................................................	19	1	73.00	0.00	0.00	0.00	2.00	71.00
.......................................................................................................TCGGTGGGACTTTCTTCCGTT......................................................	21	1	64.00	0.00	3.00	0.00	3.00	58.00
.............................................................CCGGATGATGGTTCACAACG.................................................................................................	20	1	61.00	0.00	1.00	2.00	5.00	53.00
.......................................................................................................TCGGTGGGCCTTTCGTCCGTTT.....................................................	22	1	50.00	0.00	3.00	2.00	6.00	39.00
.......................................................................................................TCGGTGGGACTTTCGTCCGG.......................................................	20	1	43.00	0.00	1.00	0.00	0.00	42.00
.......................................................................................................TCGGTGGGACTTTCCTCCGTT......................................................	21	1	39.00	0.00	2.00	0.00	0.00	37.00
.......................................................................................................TCGGTGGGACTTTCGTCCGC.......................................................	20	1	39.00	0.00	0.00	0.00	0.00	39.00
.......................................................................................................TCGGTGGGACTTTCxTCCGTT......................................................	20	1	34.00	0.00	0.00	0.00	0.00	34.00
.............................................................CCGGATGATTGTTCACAACGACC..............................................................................................	23	1	34.00	0.00	0.00	0.00	0.00	34.00
.............................................................CCGGATGATGGTTCACAACGACA..............................................................................................	23	1	33.00	0.00	0.00	1.00	0.00	32.00
.............................................................CCGGATGATGGTTCACAACGACCT.............................................................................................	24	1	31.00	0.00	0.00	0.00	0.00	31.00
.............................................................CCGGATGATGGTTCACAACGAC...............................................................................................	22	1	30.00	1.00	3.00	2.00	1.00	23.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTC.....................................................	22	1	29.00	0.00	2.00	0.00	4.00	23.00
.......................................................................................................TCGGTGGGACTTTCGGCCGTT......................................................	21	1	29.00	0.00	4.00	0.00	2.00	23.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTTA....................................................	23	1	28.00	0.00	13.00	2.00	11.00	2.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTTC....................................................	23	1	28.00	0.00	1.00	0.00	2.00	25.00
.............................................................CCGGATGATGTTTCACAACGACC..............................................................................................	23	1	26.00	0.00	0.00	0.00	0.00	26.00
.............................................................CCGGATGATGGTTCACAACGACT..............................................................................................	23	1	26.00	0.00	0.00	0.00	0.00	26.00
.............................................................CCGGATGATxGTTCACAACGACC..............................................................................................	22	1	20.00	0.00	0.00	0.00	0.00	20.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTG......................................................	21	1	18.00	0.00	0.00	0.00	2.00	16.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTA.....................................................	22	1	18.00	0.00	6.00	1.00	9.00	2.00
.............................................................CCGGATGATGGTTCACAACGA................................................................................................	21	1	15.00	0.00	2.00	4.00	3.00	6.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTGG.....................................................	22	1	14.00	0.00	0.00	0.00	0.00	14.00
.......................................................................................................TCGGTGGGACTTTCGTCCTTTT.....................................................	22	1	14.00	0.00	2.00	0.00	4.00	8.00
.......................................................................................................TCGGTGGGACTTTCGTCC.........................................................	18	1	14.00	0.00	1.00	0.00	0.00	13.00
.......................................................................................................TCGGTGGGACTTTCGTCCGGT......................................................	21	1	14.00	0.00	1.00	0.00	2.00	11.00
.......................................................................................................TCGGTGGGACTTTCGTCCGGTT.....................................................	22	1	12.00	0.00	7.00	0.00	2.00	3.00
.......................................................................................................TCGGGGGGACTTTCGTCCGTT......................................................	21	1	12.00	0.00	1.00	0.00	10.00	1.00
.......................................................................................................TCGGTGGGACTTTCGCCCGTT......................................................	21	1	11.00	0.00	1.00	0.00	4.00	6.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTTTT...................................................	24	1	10.00	0.00	3.00	0.00	5.00	2.00
.......................................................................................................TCGGTGGGACTTTCGTCCGCTT.....................................................	22	1	9.00	0.00	4.00	0.00	5.00	0.00
.......................................................................................................TCGGAGGGACTTTCGTCCGTT......................................................	21	1	9.00	0.00	1.00	0.00	4.00	4.00
.......................................................................................................TCGGTGGGACTTTCTTCCGTTT.....................................................	22	1	8.00	0.00	0.00	1.00	5.00	2.00
.........................................................................................................GGTGGGACTTTCGTCCGTTT.....................................................	20	1	8.00	0.00	4.00	0.00	4.00	0.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTTAA...................................................	24	1	8.00	0.00	0.00	1.00	5.00	2.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTTAC...................................................	24	1	8.00	0.00	0.00	0.00	0.00	8.00
.......................................................................................................TCGGTGGGACTTTCGTCCGCT......................................................	21	1	8.00	0.00	3.00	0.00	5.00	0.00
.......................................................................................................TCGGGGGGACTTTCGTCCGTTT.....................................................	22	1	8.00	0.00	0.00	0.00	8.00	0.00
.......................................................................................................TCGGTGGGTCTTTCGTCCGTTT.....................................................	22	1	8.00	0.00	0.00	0.00	8.00	0.00
.............................................................CCGGATGATCGTTCACAACGACC..............................................................................................	23	1	7.00	0.00	0.00	0.00	0.00	7.00
.......................................................................................................TCGGTGGGTCTTTCGTCCGTT......................................................	21	1	7.00	0.00	2.00	0.00	4.00	1.00
.......................................................................................................TCGGTGGGACTTTCCTCCGTTT.....................................................	22	1	7.00	0.00	0.00	0.00	5.00	2.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTTG....................................................	23	1	7.00	0.00	1.00	1.00	3.00	2.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTTGT...................................................	24	1	7.00	0.00	1.00	1.00	4.00	1.00
.......................................................................................................TCGGTGGGGCTTTCGTCCGTT......................................................	21	1	7.00	0.00	1.00	0.00	3.00	3.00
.......................................................................................................TCGGTGGGACTTTCGGCCGTTT.....................................................	22	1	7.00	0.00	0.00	0.00	4.00	3.00
.......................................................................................................TCGGTGGGACTTTCGTCCTTT......................................................	21	1	7.00	0.00	2.00	0.00	5.00	0.00
.......................................................................................................TCGGTTGGACTTTCGTCCGTT......................................................	21	1	7.00	0.00	0.00	0.00	0.00	7.00
.......................................................................................................TCTGTGGGACTTTCGTCCGTTT.....................................................	22	1	7.00	0.00	1.00	0.00	0.00	6.00
.......................................................................................................TCGGCGGGACTTTCGTCCGTT......................................................	21	1	7.00	0.00	0.00	0.00	6.00	1.00
.........................................................................................................GGTGGGACTTTCGTCCGTT......................................................	19	1	6.00	0.00	3.00	0.00	3.00	0.00
.......................................................................................................TCGGTGGGACTTTTGTCCGTT......................................................	21	1	6.00	0.00	0.00	0.00	3.00	3.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTA......................................................	21	1	6.00	0.00	2.00	0.00	0.00	4.00
.......................................................................................................TCGGTGGGGCTTTCGTCCGTTT.....................................................	22	1	6.00	0.00	1.00	0.00	3.00	2.00
.......................................................................................................TCGGTGGGACTTTxTTCCGTT......................................................	20	1	5.00	0.00	0.00	0.00	0.00	5.00
.......................................................................................................TCGGGGGGGCTTTCGTCCGTT......................................................	21	1	5.00	0.00	1.00	0.00	3.00	1.00
.......................................................................................................TCGGTGGGAATTTCGTCCGTT......................................................	21	1	5.00	0.00	1.00	0.00	3.00	1.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTTTC...................................................	24	1	5.00	0.00	1.00	0.00	0.00	4.00
.......................................................................................................TCGGCGGGACTTTCGTCCGTTT.....................................................	22	1	5.00	0.00	2.00	0.00	3.00	0.00
.......................................................................................................TCGGTGAGACTTTCGTCCGTT......................................................	21	1	5.00	0.00	1.00	0.00	0.00	4.00
.......................................................................................................TCGGAGGGACTTTCGTCCGTTT.....................................................	22	1	5.00	0.00	0.00	0.00	5.00	0.00
.............................................................CCGGATGATGGTTCACAACGACCC.............................................................................................	24	1	5.00	0.00	0.00	0.00	0.00	5.00
.......................................................................................................TCAGTGGGACTTTCGTCCGTTT.....................................................	22	1	5.00	0.00	2.00	0.00	2.00	1.00
.......................................................................................................TCGGTGGGACTTTCATCCGTT......................................................	21	1	5.00	0.00	0.00	0.00	2.00	3.00
.............................................................CCGGACGATGGTTCACAACGACC..............................................................................................	23	1	5.00	0.00	1.00	0.00	1.00	3.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTG.....................................................	22	1	5.00	0.00	1.00	0.00	1.00	3.00
.......................................................................................................TCGGTTGGACTTTCGTCCGTTT.....................................................	22	1	5.00	0.00	1.00	0.00	2.00	2.00
.......................................................................................................TCGGTGGGACTTTCGTCTGTT......................................................	21	1	5.00	0.00	0.00	0.00	0.00	5.00
.............................................................CCGGATGATAGTTCACAACGACC..............................................................................................	23	1	4.00	0.00	0.00	0.00	1.00	3.00
.............................................................CCGGATTATGGTTCACAACGACC..............................................................................................	23	1	4.00	0.00	0.00	0.00	0.00	4.00
.......................................................................................................TCGGTGGGACTTTCGCCCGTTT.....................................................	22	1	4.00	0.00	0.00	0.00	3.00	1.00
.......................................................................................................TCGGTGGGACTTTAGTCCGTTT.....................................................	22	1	4.00	0.00	2.00	0.00	2.00	0.00
.......................................................................................................TCGGTGGGACCTTCGTCCGTT......................................................	21	1	4.00	0.00	0.00	0.00	0.00	4.00
.......................................................................................................TCGGTGGGACTTTAGTCCGTT......................................................	21	1	4.00	0.00	2.00	0.00	2.00	0.00
.......................................................................................................TCGGTAGGACTTTCGTCCGTTT.....................................................	22	1	4.00	0.00	2.00	0.00	0.00	2.00
.......................................................................................................TCGGGGGGGCTTTCGTCCGTTT.....................................................	22	1	4.00	0.00	0.00	0.00	4.00	0.00
.............................................................CCGGATGATGGTTCACAACAACC..............................................................................................	23	1	4.00	1.00	1.00	0.00	0.00	2.00
.............................................................CCGGATGATGCTTCACAACGACC..............................................................................................	23	1	4.00	0.00	0.00	0.00	0.00	4.00
.......................................................................................................TCGGTGGGCCTTTCGTCCGT.......................................................	20	1	3.00	0.00	0.00	0.00	0.00	3.00
.............................................................CCGGATGATGGTTCACAACGACCA.............................................................................................	24	1	3.00	0.00	0.00	0.00	0.00	3.00
.......................................................................................................TCGGTGGAACTTTCGTCCGTT......................................................	21	1	3.00	0.00	1.00	0.00	1.00	1.00
..............................................................CGGATGATGGTTCACAACGACC..............................................................................................	22	1	3.00	0.00	0.00	0.00	0.00	3.00
.......................................................................................................TCGGTCGGACTTTCGTCCGTT......................................................	21	1	3.00	0.00	0.00	0.00	1.00	2.00
.......................................................................................................TCGCTGGGACTTTCGTCCGTTT.....................................................	22	1	3.00	0.00	1.00	0.00	2.00	0.00
.......................................................................................................TTGGTGGGACTTTCGTCCGTT......................................................	21	1	3.00	0.00	0.00	0.00	0.00	3.00
.......................................................................................................TCGGTGGGACTTTCGTCAGTTT.....................................................	22	1	3.00	0.00	2.00	0.00	1.00	0.00
.......................................................................................................TCGGTGGGCCTTTCGTCCGG.......................................................	20	1	3.00	0.00	0.00	0.00	0.00	3.00
.......................................................................................................TCGGTGGGACTTTCGACCGTT......................................................	21	1	3.00	0.00	0.00	0.00	0.00	3.00
.......................................................................................................CCGGTGGGACTTTCGTCCGTTT.....................................................	22	1	3.00	0.00	1.00	0.00	0.00	2.00
.......................................................................................................TCGGTGGGACTTTCGTACGTT......................................................	21	1	3.00	0.00	1.00	0.00	2.00	0.00
.......................................................................................................TCGGGGGGACTTTCGTCCGCT......................................................	21	1	3.00	0.00	1.00	0.00	2.00	0.00
.......................................................................................................TCTGTGGGACTTTCGTCCGTT......................................................	21	1	3.00	0.00	0.00	0.00	0.00	3.00
.......................................................................................................TCGGGGGGTCTTTCGTCCGTT......................................................	21	1	3.00	0.00	0.00	0.00	3.00	0.00
.......................................................................................................TCGGTGGGACCTTCGTCCGTTT.....................................................	22	1	3.00	0.00	0.00	0.00	2.00	1.00

droEre2

T--GATACGAG---------------------------ACCATGGTAATGGTACGGTGCGACCGGATGATGGTTCACAACGACCGT---GTCCTTTAAACGGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAACGATTTATCA----------------GTGTCCG---	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
.......................................................................................................TCGGTGGGACTTTCGTCCGTTT.....................................................	22	1	1259.00	3.00	520.00	5.00	731.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTT......................................................	21	1	837.00	0.00	335.00	0.00	502.00
.............................................................CCGGATGATGGTTCACAACGACC..............................................................................................	23	1	587.00	22.00	23.00	22.00	520.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTTT....................................................	23	1	35.00	0.00	17.00	1.00	17.00
.............................................................CCGGATGATGGTTCACAACGAC...............................................................................................	22	1	29.00	3.00	1.00	0.00	25.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTTA....................................................	23	1	26.00	0.00	8.00	0.00	18.00
.............................................................CCGGATGATGGTTCACAACG.................................................................................................	20	1	16.00	0.00	3.00	0.00	13.00
.......................................................................................................TCGGTGGGACTTTCGTCCGT.......................................................	20	1	13.00	0.00	7.00	0.00	6.00
.............................................................CCGGATGATGGTTCACAACGA................................................................................................	21	1	13.00	0.00	0.00	0.00	13.00
.......................................................................................................TCGGTGGGACTTTCGTCAGTTT.....................................................	22	1	12.00	0.00	1.00	0.00	11.00
.............................................................CCTGATGATGGTTCACAACGACC..............................................................................................	23	1	11.00	0.00	0.00	0.00	11.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTA.....................................................	22	1	11.00	0.00	2.00	0.00	9.00
.............................................................CAGGATGATGGTTCACAACGACC..............................................................................................	23	1	10.00	0.00	0.00	0.00	10.00
.......................................................................................................TCGGTGTGACTTTCGTCCGTT......................................................	21	1	10.00	0.00	0.00	0.00	10.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTTAA...................................................	24	1	9.00	0.00	1.00	0.00	8.00
.............................................................CCGGATGATGGTTCACAACTACC..............................................................................................	23	1	9.00	1.00	0.00	0.00	8.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTTC....................................................	23	1	9.00	0.00	3.00	0.00	6.00
.............................................................CCGGATGATTGTTCACAACGACC..............................................................................................	23	1	9.00	0.00	0.00	0.00	9.00
.......................................................................................................TCGGTTGGACTTTCGTCCGTTT.....................................................	22	1	9.00	0.00	0.00	0.00	9.00
.........................................................................................................GGTGGGACTTTCGTCCGTTT.....................................................	20	1	8.00	0.00	4.00	0.00	4.00
.......................................................................................................TCGGTGGGACTTTCGTACGTT......................................................	21	1	8.00	0.00	0.00	0.00	8.00
.......................................................................................................TCTGTGGGACTTTCGTCCGTTT.....................................................	22	1	7.00	0.00	1.00	0.00	6.00
.........................................................................................................GGTGGGACTTTCGTCCGTT......................................................	19	1	6.00	0.00	4.00	0.00	2.00
.......................................................................................................TCGGTAGGACTTTCGTCCGTTT.....................................................	22	1	6.00	0.00	4.00	0.00	2.00
.......................................................................................................TCGGTTGGACTTTCGTCCGTT......................................................	21	1	6.00	0.00	0.00	0.00	6.00
.......................................................................................................TCGGTGGGACTTTCGTACGTTT.....................................................	22	1	6.00	0.00	1.00	0.00	5.00
.............................................................ACGGATGATGGTTCACAACGACC..............................................................................................	23	1	5.00	0.00	0.00	0.00	5.00
.......................................................................................................TCGGTGGGTCTTTCGTCCGTT......................................................	21	1	5.00	0.00	5.00	0.00	0.00
.......................................................................................................TCGGTGGGACTTTCGCCCGTT......................................................	21	1	5.00	0.00	2.00	0.00	3.00
.......................................................................................................TCGGTGAGACTTTCGTCCGTTT.....................................................	22	1	5.00	0.00	5.00	0.00	0.00
.......................................................................................................TCGGCGGGACTTTCGTCCGTTT.....................................................	22	1	5.00	0.00	2.00	0.00	3.00
.......................................................................................................TCGGTGGGACTTTCGTCCGCTT.....................................................	22	1	5.00	0.00	5.00	0.00	0.00
.......................................................................................................TCGGTGAGACTTTCGTCCGTT......................................................	21	1	5.00	0.00	4.00	0.00	1.00
.......................................................................................................TAGGTGGGACTTTCGTCCGTT......................................................	21	1	5.00	0.00	0.00	0.00	5.00
.......................................................................................................TCGGTGGGACTTTCGTCCTTTT.....................................................	22	1	5.00	0.00	3.00	0.00	2.00
.............................................................CCGGATGATGGTTCACAACGACT..............................................................................................	23	1	5.00	0.00	0.00	0.00	5.00
.............................................................CCGGATGATGGTTCACAACGACG..............................................................................................	23	1	5.00	0.00	0.00	0.00	5.00
.............................................................CCGGATTATGGTTCACAACGACC..............................................................................................	23	1	4.00	0.00	0.00	0.00	4.00
.......................................................................................................TAGGTGGGACTTTCGTCCGTTT.....................................................	22	1	4.00	0.00	1.00	0.00	3.00
.......................................................................................................TCGGAGGGACTTTCGTCCGTTT.....................................................	22	1	4.00	0.00	4.00	0.00	0.00
.......................................................................................................TCGGTGGTACTTTCGTCCGTT......................................................	21	1	4.00	0.00	0.00	0.00	4.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTC.....................................................	22	1	4.00	0.00	1.00	0.00	3.00
.......................................................................................................TCTGTGGGACTTTCGTCCGTT......................................................	21	1	4.00	0.00	0.00	0.00	4.00
.......................................................................................................TCGGTGGGACTTTCGTCCTTT......................................................	21	1	4.00	0.00	2.00	0.00	2.00
.......................................................................................................TCGGTGGGACTTTCGTCGTTT......................................................	21	1	4.00	0.00	0.00	0.00	4.00
.......................................................................................................TCGGTGTGACTTTCGTCCGTTT.....................................................	22	1	4.00	0.00	1.00	0.00	3.00
........................................................................................................TCGTGGGACTTTCGTCCGTTT.....................................................	21	1	4.00	0.00	0.00	0.00	4.00
.......................................................................................................TCGGTGGGACTTTCGTCCATTT.....................................................	22	1	4.00	0.00	3.00	0.00	1.00
.......................................................................................................TCGGTGGGACTTTCTTCCGTTT.....................................................	22	1	3.00	0.00	3.00	0.00	0.00
.............................................................CCGGATGATGGTTCACAAC..................................................................................................	19	1	3.00	0.00	0.00	0.00	3.00
.............................................................CCGGATGATGGTTCACAACGT................................................................................................	21	1	3.00	0.00	0.00	0.00	3.00
.......................................................................................................TCGGTGGGACTTTCGTCT.........................................................	18	1	3.00	0.00	0.00	0.00	3.00
.......................................................................................................TCGGTGGGACTTTCGTCCGCT......................................................	21	1	3.00	0.00	3.00	0.00	0.00
.......................................................................................................TCGGTGGGCCTTTCGTCCGTT......................................................	21	1	3.00	0.00	3.00	0.00	0.00
.............................................................CCGGATGATGGTTAACAACGACC..............................................................................................	23	1	3.00	0.00	0.00	0.00	3.00
.......................................................................................................TCGGTGGGACTTTCGTCTGTTT.....................................................	22	1	3.00	0.00	1.00	0.00	2.00
.......................................................................................................TCGGGGGGACTTTCGTCCGTT......................................................	21	1	3.00	0.00	2.00	0.00	1.00
.......................................................................................................CCGGTGGGACTTTCGTCCGTTT.....................................................	22	1	3.00	0.00	2.00	0.00	1.00
.............................................................CCGGATGATGGTTCACAGCGACC..............................................................................................	23	1	3.00	0.00	0.00	0.00	3.00
.......................................................................................................TCGGTGGGACTTTCGTTCGTTT.....................................................	22	1	3.00	0.00	0.00	0.00	3.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTTAAA..................................................	25	1	3.00	0.00	1.00	0.00	2.00
.............................................................CCGGATGATGCTTCACAACGACC..............................................................................................	23	1	3.00	1.00	0.00	0.00	2.00
.............................................................CCGGATGATGGTTCACAACGACA..............................................................................................	23	1	3.00	0.00	0.00	0.00	3.00
.......................................................................................................TCGGTGGGGCTTTCGTCCGTTT.....................................................	22	1	3.00	0.00	2.00	0.00	1.00

droAna3

TATG-----------------------------------TAACGGTAATGGTACGGTGCGACCGGATGATGGTTCACAACGACCGT---GTCCTTCGAACGGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAGCGATTTATCA-------------------TCCG--G	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
.......................................................................................................TCGGTGGGACTTTCGTCCGTTT.....................................................	22	1	1352.00	426.00	300.00	626.00	0.00
.............................................................CCGGATGATGGTTCACAACGACC..............................................................................................	23	1	695.00	50.00	615.00	26.00	4.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTT......................................................	21	1	617.00	33.00	110.00	474.00	0.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTTT....................................................	23	1	111.00	31.00	30.00	50.00	0.00
.............................................................CCGGATGATGGTTCACAACGAC...............................................................................................	22	1	40.00	6.00	27.00	7.00	0.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTTA....................................................	23	1	25.00	4.00	14.00	7.00	0.00
.......................................................................................................TCGGTGGGACTTTCGTCCGT.......................................................	20	1	20.00	3.00	4.00	13.00	0.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTA.....................................................	22	1	20.00	1.00	11.00	8.00	0.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTTTT...................................................	24	1	19.00	6.00	5.00	8.00	0.00
.......................................................................................................TCGGGGGGACTTTCGTCCGTT......................................................	21	1	14.00	0.00	0.00	14.00	0.00
.............................................................CCGGATGATGGTTCACAACGA................................................................................................	21	1	14.00	2.00	11.00	1.00	0.00
.......................................................................................................TCGGAGGGACTTTCGTCCGTTT.....................................................	22	1	13.00	0.00	1.00	12.00	0.00
.......................................................................................................TCTGTGGGACTTTCGTCCGTTT.....................................................	22	1	13.00	2.00	11.00	0.00	0.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTTC....................................................	23	1	12.00	0.00	7.00	5.00	0.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTTAA...................................................	24	1	12.00	2.00	8.00	2.00	0.00
.............................................................CCGGATGATGGTTCACAACG.................................................................................................	20	1	11.00	1.00	8.00	2.00	0.00
.......................................................................................................TCGGGGGGACTTTCGTCCGTTT.....................................................	22	1	10.00	0.00	0.00	10.00	0.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTG.....................................................	22	1	10.00	1.00	2.00	7.00	0.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTTG....................................................	23	1	10.00	6.00	2.00	2.00	0.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTCT.....................................................	22	1	8.00	5.00	3.00	0.00	0.00
.............................................................CCTGATGATGGTTCACAACGACC..............................................................................................	23	1	7.00	0.00	7.00	0.00	0.00
.......................................................................................................TCGGTGGGCCTTTCGTCCGTTT.....................................................	22	1	6.00	0.00	0.00	6.00	0.00
.......................................................................................................TCGGCGGGACTTTCGTCCGTTT.....................................................	22	1	6.00	0.00	0.00	6.00	0.00
.......................................................................................................TCGGTGGGGCTTTCGTCCGTTT.....................................................	22	1	6.00	0.00	0.00	6.00	0.00
.......................................................................................................TCGGCGGGACTTTCGTCCGTT......................................................	21	1	6.00	0.00	0.00	6.00	0.00
.............................................................CCGGATGATGTTTCACAACGACC..............................................................................................	23	1	5.00	1.00	4.00	0.00	0.00
.......................................................................................................TCGGTGGGGCTTTCGTCCGTT......................................................	21	1	5.00	0.00	0.00	5.00	0.00
.......................................................................................................TCGGTGGTACTTTCGTCCGTTT.....................................................	22	1	5.00	0.00	4.00	1.00	0.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTC.....................................................	22	1	5.00	0.00	3.00	2.00	0.00
.............................................................CCGGATGATGGTTCACAACGACCT.............................................................................................	24	1	5.00	0.00	5.00	0.00	0.00
.............................................................CCGGATGATGGTTAACAACGACC..............................................................................................	23	1	5.00	0.00	5.00	0.00	0.00
.........................................................................................................GGTGGGACTTTCGTCCGTTT.....................................................	20	1	5.00	1.00	0.00	4.00	0.00
.......................................................................................................TCGGTGGGACTTTCGTCAGTTT.....................................................	22	1	5.00	1.00	2.00	2.00	0.00
.......................................................................................................TCGGTGGGACTTTCGTCCTTTT.....................................................	22	1	4.00	0.00	2.00	2.00	0.00
.......................................................................................................TAGGTGGGACTTTCGTCCGTTT.....................................................	22	1	4.00	2.00	2.00	0.00	0.00
.......................................................................................................TCGATGGGACTTTCGTCCGTTT.....................................................	22	1	4.00	1.00	0.00	3.00	0.00
.......................................................................................................TCGGTGCGACTTTCGTCCGTT......................................................	21	1	4.00	0.00	0.00	4.00	0.00
.......................................................................................................TCGGAGGGACTTTCGTCCGTT......................................................	21	1	4.00	0.00	0.00	4.00	0.00
.........................................................................................................GGTGGGACTTTCGTCCGTT......................................................	19	1	4.00	0.00	0.00	4.00	0.00
.............................................................CCGGATGATGGTTCACAACTACC..............................................................................................	23	1	4.00	0.00	4.00	0.00	0.00
.......................................................................................................TCGGTGGGACTTTCGTACGTTT.....................................................	22	1	4.00	1.00	1.00	2.00	0.00
.......................................................................................................TCGGTGGGACTTTCGTCCGGTT.....................................................	22	1	4.00	1.00	0.00	3.00	0.00
.......................................................................................................TCGGTGGGACTTTCATCCGTT......................................................	21	1	4.00	0.00	1.00	3.00	0.00
.......................................................................................................TCGGTGGGACTGTCGTCCGTTT.....................................................	22	1	4.00	4.00	0.00	0.00	0.00
.......................................................................................................TCGGTGGGACTTTCTTCCGTTT.....................................................	22	1	3.00	2.00	0.00	1.00	0.00
......................................................................................................CTCGGTGGGACTTTCGTCCGTT......................................................	22	1	3.00	1.00	0.00	2.00	0.00
.......................................................................................................TCGGTGGCACTTTCGTCCGTTT.....................................................	22	1	3.00	0.00	0.00	3.00	0.00
.......................................................................................................TCGGTxGGACTTTCGTCCGTT......................................................	20	1	3.00	0.00	3.00	0.00	0.00
.......................................................................................................TCGGTGGGACTTTCGTTCGT.......................................................	20	1	3.00	0.00	3.00	0.00	0.00
.............................................................CCGGATGATGGTTCACAACGGCC..............................................................................................	23	1	3.00	1.00	1.00	1.00	0.00
.......................................................................................................TCGGTAGGACTTTCGTCCGTTT.....................................................	22	1	3.00	0.00	2.00	1.00	0.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTTTG...................................................	24	1	3.00	1.00	1.00	1.00	0.00
.............................................................CCGGATGATxGTTCACAACGACC..............................................................................................	22	1	3.00	1.00	2.00	0.00	0.00
.......................................................................................................TCGGTTGGACTTTCGTCCGTTT.....................................................	22	1	3.00	0.00	3.00	0.00	0.00
.......................................................................................................TCGGTGGGACTTTCCTCCGTTT.....................................................	22	1	3.00	0.00	1.00	2.00	0.00
.......................................................................................................TCGGTGGGACTTTCGTCCTTTTT....................................................	23	1	3.00	1.00	1.00	1.00	0.00
.......................................................................................................TCGGGGGGGCTTTCGTCCGTTT.....................................................	22	1	3.00	0.00	0.00	3.00	0.00
.......................................................................................................TCGGTGGGACTTTAGTCCGTT......................................................	21	1	3.00	0.00	0.00	3.00	0.00
.......................................................................................................TCGGTGGGACTTTTGTCCGTTT.....................................................	22	1	3.00	0.00	3.00	0.00	0.00
.............................................................CCAGATGATGGTTCACAACGACC..............................................................................................	23	1	3.00	0.00	3.00	0.00	0.00
.......................................................................................................TCGGTCGGACTTTCGTCCGTTT.....................................................	22	1	3.00	1.00	0.00	2.00	0.00
......................................................................................................CTCGGTGGGACTTTCGTCCGTTT.....................................................	23	1	3.00	0.00	0.00	3.00	0.00
.......................................................................................................TCGGTTGGACTTTCGTCCGTT......................................................	21	1	3.00	0.00	1.00	2.00	0.00
.......................................................................................................ACGGTGGGACTTTCGTCCGTTT.....................................................	22	1	3.00	0.00	1.00	2.00	0.00
.......................................................................................................TCGGTGGGACTTTCGTTCGTTT.....................................................	22	1	3.00	1.00	1.00	1.00	0.00
.......................................................................................................TCGGTCGGACTTTCGTCCGTT......................................................	21	1	3.00	0.00	1.00	2.00	0.00
.......................................................................................................TCGGTGGGACTTTCGTCCGCTT.....................................................	22	1	3.00	0.00	0.00	3.00	0.00
.......................................................................................................TCGGTGGGACTTTCGCCCGTTT.....................................................	22	1	3.00	1.00	1.00	1.00	0.00
.......................................................................................................TCGGTGGGTCTTTCGTCCGTTT.....................................................	22	1	3.00	0.00	0.00	3.00	0.00

dp4

T--G-----------------------------------CAACGGTAATGGTACGGTGCGACCGGACGATGGTTCACAACGACCGT---GTCTCTTAAACTGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAGCGATTTATCATCATCGTCGCGCCCCAGTGCTCG--T	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
.......................................................................................................TCGGTGGGACTTTCGTCCGTTT.....................................................	22	1	1230.00	173.00	13.00	996.00	48.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTT......................................................	21	1	723.00	27.00	0.00	534.00	162.00
.............................................................CCGGACGATGGTTCACAACGACC..............................................................................................	23	1	266.00	13.00	58.00	45.00	150.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTTT....................................................	23	1	56.00	13.00	0.00	43.00	0.00
.......................................................................................................TCGGTGGGACTTTCGTCCGT.......................................................	20	1	29.00	2.00	0.00	17.00	10.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTTC....................................................	23	1	12.00	0.00	0.00	9.00	3.00
.......................................................................................................TCGGTGGGACTTTCGTCCG........................................................	19	1	12.00	2.00	0.00	0.00	10.00
.......................................................................................................TCGGGGGGACTTTCGTCCGTTT.....................................................	22	1	10.00	0.00	0.00	10.00	0.00
.......................................................................................................TCGGAGGGACTTTCGTCCGTTT.....................................................	22	1	10.00	0.00	0.00	10.00	0.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTTA....................................................	23	1	10.00	2.00	0.00	8.00	0.00
.............................................................CCGGACGATGGTTCACAACGAC...............................................................................................	22	1	9.00	2.00	0.00	1.00	6.00
.........................................................................................................GGTGGGACTTTCGTCCGTTT.....................................................	20	1	8.00	0.00	0.00	8.00	0.00
.......................................................................................................TCAGTGGGACTTTCGTCCGTTT.....................................................	22	1	8.00	1.00	0.00	7.00	0.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTC.....................................................	22	1	8.00	1.00	0.00	5.00	2.00
.......................................................................................................CCGGTGGGACTTTCGTCCGTT......................................................	21	1	5.00	0.00	0.00	5.00	0.00
.........................................................................................................GGTGGGACTTTCGTCCGTT......................................................	19	1	5.00	0.00	0.00	5.00	0.00
.......................................................................................................TCGTTGGGACTTTCGTCCGTTT.....................................................	22	1	5.00	2.00	0.00	3.00	0.00
.......................................................................................................TCGGTGGGACTTTCCTCCGTT......................................................	21	1	4.00	1.00	0.00	3.00	0.00
.......................................................................................................TCGGTGAGACTTTCGTCCGTTT.....................................................	22	1	4.00	1.00	0.00	3.00	0.00
.......................................................................................................TCGGTGGGACTTTCTTCCGTT......................................................	21	1	4.00	0.00	0.00	0.00	4.00
.......................................................................................................TCGGTGGGACTTTCxTCCGTT......................................................	20	1	4.00	0.00	0.00	0.00	4.00
.......................................................................................................TCAGTGGGACTTTCGTCCGTT......................................................	21	1	4.00	0.00	0.00	4.00	0.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTTCC...................................................	24	1	4.00	0.00	0.00	4.00	0.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTTTT...................................................	24	1	3.00	1.00	0.00	2.00	0.00
.......................................................................................................TCGGTGGGAATTTCGTCCGTTT.....................................................	22	1	3.00	0.00	0.00	3.00	0.00
.......................................................................................................TCGGTGGGACTTTCGGCCGTTT.....................................................	22	1	3.00	0.00	0.00	2.00	1.00
.............................................................CCGGACGATGGTTCACAACG.................................................................................................	20	1	3.00	1.00	0.00	1.00	1.00
.............................................................CCGGATGATGGTTCACAACGACC..............................................................................................	23	1	3.00	1.00	2.00	0.00	0.00
.............................................................CCGGACGATGGTTCACAACGA................................................................................................	21	1	3.00	1.00	0.00	2.00	0.00
.......................................................................................................TCCGTGGGACTTTCGTCCGTTT.....................................................	22	1	3.00	0.00	0.00	3.00	0.00
.......................................................................................................TCGGTGGGACTTTCATCCGTT......................................................	21	1	3.00	0.00	0.00	2.00	1.00
.......................................................................................................TCGGCGGGACTTTCGTCCGTTT.....................................................	22	1	3.00	0.00	0.00	3.00	0.00
.......................................................................................................TCGGTGGGGCTTTCGTCCGTTT.....................................................	22	1	3.00	0.00	0.00	3.00	0.00
.......................................................................................................TCGGTGGGACTTTCGTCCGC.......................................................	20	1	3.00	0.00	0.00	0.00	3.00
.......................................................................................................TCGGTAGGACTTTCGTCCGTT......................................................	21	1	3.00	0.00	0.00	3.00	0.00
.......................................................................................................TCGGTGGGACTTTAGTCCGTT......................................................	21	1	3.00	0.00	0.00	3.00	0.00

droPer1

T--G-----------------------------------CAACGGTAATGGTACGGTGCGACCGGACGATGGTTCACAACGACCGT---GTCTCTTAAACTGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAGCGATTTATCATCATCGTCGCGCCCCAGTGCTCG--T	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
.......................................................................................................TCGGTGGGACTTTCGTCCGTTT.....................................................	22	1	1671.00	82.00	4.00	682.00	874.00	29.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTT......................................................	21	1	1335.00	41.00	0.00	412.00	834.00	48.00
.............................................................CCGGACGATGGTTCACAACGACC..............................................................................................	23	1	1032.00	0.00	10.00	32.00	45.00	945.00
.......................................................................................................TCGGTGGGACTTTCGTCCGT.......................................................	20	1	98.00	2.00	0.00	22.00	73.00	1.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTTT....................................................	23	1	61.00	6.00	0.00	21.00	34.00	0.00
.......................................................................................................TCGGGGGGACTTTCGTCCGTT......................................................	21	1	21.00	0.00	0.00	0.00	21.00	0.00
.......................................................................................................TCGGAGGGACTTTCGTCCGTTT.....................................................	22	1	19.00	0.00	0.00	4.00	15.00	0.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTTA....................................................	23	1	19.00	2.00	0.00	5.00	12.00	0.00
.......................................................................................................TCGGAGGGACTTTCGTCCGTT......................................................	21	1	13.00	0.00	0.00	3.00	10.00	0.00
.......................................................................................................TCGGGGGGACTTTCGTCCGTTT.....................................................	22	1	13.00	0.00	0.00	2.00	11.00	0.00
.......................................................................................................TCGGTGGGGCTTTCGTCCGTT......................................................	21	1	11.00	0.00	0.00	1.00	10.00	0.00
.............................................................CCGGACGATGGTTCACAACGAC...............................................................................................	22	1	11.00	0.00	0.00	1.00	1.00	9.00
.........................................................................................................GGTGGGACTTTCGTCCGTTT.....................................................	20	1	10.00	0.00	0.00	1.00	9.00	0.00
.......................................................................................................TCGGTGGGGCTTTCGTCCGTTT.....................................................	22	1	10.00	0.00	0.00	5.00	5.00	0.00
.......................................................................................................TCGGTGAGACTTTCGTCCGTTT.....................................................	22	1	9.00	0.00	0.00	7.00	2.00	0.00
.......................................................................................................TCGGCGGGACTTTCGTCCGTTT.....................................................	22	1	9.00	0.00	0.00	4.00	5.00	0.00
.......................................................................................................TCGGTAGGACTTTCGTCCGTTT.....................................................	22	1	8.00	0.00	0.00	7.00	1.00	0.00
.......................................................................................................TCGGTGGGACTTTCGTCCGCTT.....................................................	22	1	8.00	0.00	0.00	4.00	3.00	1.00
.......................................................................................................TCGGTCGGACTTTCGTCCGTTT.....................................................	22	1	8.00	0.00	0.00	5.00	3.00	0.00
.......................................................................................................TCGGTGGGACTTTAGTCCGTTT.....................................................	22	1	8.00	0.00	0.00	3.00	5.00	0.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTA.....................................................	22	1	8.00	0.00	0.00	2.00	6.00	0.00
.......................................................................................................TCGGTGGGCCTTTCGTCCGTT......................................................	21	1	7.00	0.00	0.00	2.00	5.00	0.00
.......................................................................................................TCGGTGGGACTTTCCTCCGTTT.....................................................	22	1	6.00	0.00	0.00	2.00	4.00	0.00
.......................................................................................................TCGGTGGGACTTTCGCCCGTT......................................................	21	1	6.00	0.00	0.00	2.00	4.00	0.00
.............................................................CCGGATGATGGTTCACAACGACC..............................................................................................	23	1	6.00	2.00	0.00	0.00	0.00	4.00
.......................................................................................................TCGGCGGGACTTTCGTCCGTT......................................................	21	1	6.00	0.00	0.00	0.00	6.00	0.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTC.....................................................	22	1	6.00	1.00	0.00	2.00	3.00	0.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTTC....................................................	23	1	5.00	1.00	0.00	0.00	4.00	0.00
.......................................................................................................TCGGTGGGACTTTCGTCTGTTT.....................................................	22	1	5.00	0.00	0.00	4.00	1.00	0.00
.............................................................CCGGACTATGGTTCACAACGACC..............................................................................................	23	1	5.00	0.00	0.00	0.00	0.00	5.00
.......................................................................................................TCAGTGGGACTTTCGTCCGTTT.....................................................	22	1	5.00	1.00	0.00	2.00	2.00	0.00
.......................................................................................................TCGGTGGGACTTTTGTCCGTT......................................................	21	1	5.00	0.00	0.00	2.00	3.00	0.00
.......................................................................................................TCGGTGGGAGTTTCGTCCGTTT.....................................................	22	1	5.00	0.00	0.00	0.00	5.00	0.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTTAA...................................................	24	1	5.00	1.00	0.00	1.00	3.00	0.00
.......................................................................................................TCGGTGGGACTTTCGTCAGTTT.....................................................	22	1	5.00	1.00	0.00	3.00	1.00	0.00
.......................................................................................................TCGGTGGGTCTTTCGTCCGTT......................................................	21	1	5.00	0.00	0.00	0.00	5.00	0.00
.......................................................................................................TCGGTGGGACTTTCGTCCGCT......................................................	21	1	5.00	0.00	0.00	2.00	3.00	0.00
.........................................................................................................GGTGGGACTTTCGTCCGTT......................................................	19	1	5.00	0.00	0.00	2.00	3.00	0.00
.......................................................................................................TCGGTGGGACTTTCATCCGTTT.....................................................	22	1	5.00	0.00	0.00	0.00	5.00	0.00
.............................................................CCGGACGATTGTTCACAACGACC..............................................................................................	23	1	5.00	0.00	0.00	0.00	0.00	5.00
.............................................................CCGGACGATGGTTCACAACGACA..............................................................................................	23	1	5.00	0.00	0.00	1.00	0.00	4.00
.......................................................................................................TCGGTGGGACTTTCCTCCGTT......................................................	21	1	4.00	0.00	0.00	1.00	3.00	0.00
.......................................................................................................TCGGTGGGACTTTCTTCCGTT......................................................	21	1	4.00	0.00	0.00	1.00	3.00	0.00
.......................................................................................................TCGGTGGGACTTTAGTCCGTT......................................................	21	1	4.00	0.00	0.00	0.00	4.00	0.00
.......................................................................................................TCGGTGGGACTTTCGTTCGTTT.....................................................	22	1	4.00	1.00	0.00	0.00	3.00	0.00
.......................................................................................................TCGGTGGGACTTTCGTCGTTT......................................................	21	1	4.00	3.00	0.00	1.00	0.00	0.00
.......................................................................................................TAGGTGGGACTTTCGTCCGTTT.....................................................	22	1	4.00	0.00	0.00	0.00	4.00	0.00
.......................................................................................................TCGGTCGGACTTTCGTCCGTT......................................................	21	1	4.00	0.00	0.00	4.00	0.00	0.00
.............................................................CCGGACGATCGTTCACAACGACC..............................................................................................	23	1	4.00	0.00	0.00	0.00	0.00	4.00
.......................................................................................................TCGGTGGGACTTTCGTCCTTT......................................................	21	1	4.00	0.00	0.00	2.00	2.00	0.00
.......................................................................................................TCGGTGCGACTTTCGTCCGTT......................................................	21	1	4.00	0.00	0.00	2.00	2.00	0.00
.......................................................................................................TCGGTGGGATTTTCGTCCGTT......................................................	21	1	4.00	0.00	0.00	1.00	3.00	0.00
.............................................................CCGGACGATGGCTCACAACGACC..............................................................................................	23	1	4.00	0.00	1.00	0.00	2.00	1.00
.......................................................................................................TAGGTGGGACTTTCGTCCGTT......................................................	21	1	4.00	0.00	0.00	0.00	4.00	0.00
.......................................................................................................TCGGTGGGACTTTCGTACGTTT.....................................................	22	1	3.00	1.00	0.00	0.00	2.00	0.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTTTT...................................................	24	1	3.00	0.00	0.00	1.00	2.00	0.00
.......................................................................................................TCGGTGGGACTCTCGTCCGTTT.....................................................	22	1	3.00	0.00	0.00	1.00	2.00	0.00
.......................................................................................................CCGGTGGGACTTTCGTCCGTT......................................................	21	1	3.00	0.00	0.00	0.00	2.00	1.00
.......................................................................................................TCGGTGGGACTTTCGACCGTT......................................................	21	1	3.00	0.00	0.00	0.00	3.00	0.00
.......................................................................................................TCGGTGGGACTTTCGTCCCTTT.....................................................	22	1	3.00	0.00	0.00	0.00	3.00	0.00
.......................................................................................................TCGGTGGGACTTTCGCCCGTTT.....................................................	22	1	3.00	0.00	0.00	2.00	1.00	0.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTCT.....................................................	22	1	3.00	0.00	0.00	1.00	2.00	0.00
.......................................................................................................TCGGTGGGACTTTCGTCAGTT......................................................	21	1	3.00	0.00	0.00	1.00	2.00	0.00
.......................................................................................................TCGGTGGGACTTTCGTCCGCTC.....................................................	22	1	3.00	0.00	0.00	2.00	1.00	0.00
.......................................................................................................TCGGCGGGGCTTTCGTCCGTT......................................................	21	1	3.00	0.00	0.00	0.00	3.00	0.00
.......................................................................................................TCGGTGGGACTTTCGTCTGTT......................................................	21	1	3.00	0.00	0.00	2.00	1.00	0.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTTTTT..................................................	25	1	3.00	0.00	0.00	2.00	1.00	0.00
.......................................................................................................TCGGGGGGACTTTCCTCCGTTT.....................................................	22	1	3.00	0.00	0.00	0.00	3.00	0.00
.......................................................................................................TCGGTGTGACTTTCGTCCGTTT.....................................................	22	1	3.00	0.00	0.00	2.00	1.00	0.00
.......................................................................................................TCGGTGCGACTTTCGTCCGTTT.....................................................	22	1	3.00	1.00	0.00	1.00	1.00	0.00
.......................................................................................................TCGGTGGGACTTTCGTCCG........................................................	19	1	3.00	0.00	0.00	0.00	3.00	0.00
.......................................................................................................TCGGTGGGACTTTCGTACGTT......................................................	21	1	3.00	0.00	0.00	1.00	2.00	0.00
.......................................................................................................TCGGAGGGTCTTTCGTCCGTTT.....................................................	22	1	3.00	0.00	0.00	1.00	2.00	0.00
.......................................................................................................TCGGTGGGACTTTCGTCCGGTT.....................................................	22	1	3.00	0.00	0.00	0.00	3.00	0.00
.......................................................................................................TCGGTGGGACTTTCGTCCATT......................................................	21	1	3.00	0.00	0.00	0.00	3.00	0.00
.......................................................................................................TCGGTGGGACGTTCGTCCGTT......................................................	21	1	3.00	0.00	0.00	1.00	2.00	0.00
.............................................................CCGGACGATGGTCCACAACGACC..............................................................................................	23	1	3.00	0.00	0.00	0.00	1.00	2.00
.......................................................................................................TCGGTGGGAGTTTCGTCCGTT......................................................	21	1	3.00	0.00	0.00	0.00	3.00	0.00
.......................................................................................................TCGGTAGGACTTTCGTCCGTT......................................................	21	1	3.00	0.00	0.00	3.00	0.00	0.00
.......................................................................................................TCGGGGGGGCTTTCGTCCGTT......................................................	21	1	3.00	0.00	0.00	0.00	3.00	0.00
.......................................................................................................TCGGTGGGACTTTCGTCC.........................................................	18	1	3.00	0.00	0.00	0.00	1.00	2.00

droWil1

T--GTAACGAGTTAAAAAAAAATAAGGGGAGATCCCCCATAATGGTAATGGTACGGTGCGACCGGATGACGGTTCACAACGACCGT---GTCAATTTTACTGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAACGATTTATCA----------------TAATCTCTAG	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
.......................................................................................................TCGGTGGGACTTTCGTCCGTT......................................................	21	1	10362.00	17.00	9.00	261.00	10075.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTT.....................................................	22	1	4837.00	135.00	65.00	308.00	4329.00
.............................................................CCGGATGACGGTTCACAACGACC..............................................................................................	23	1	742.00	19.00	128.00	262.00	333.00
.......................................................................................................TCGGTGGGACTTTCGTCCGT.......................................................	20	1	580.00	0.00	1.00	0.00	579.00
.......................................................................................................TCGGTGGGACTTTCTTCCGTT......................................................	21	1	396.00	0.00	0.00	0.00	396.00
.......................................................................................................TCGGTGGGACTTTCGTCCG........................................................	19	1	238.00	0.00	0.00	0.00	238.00
.......................................................................................................TCGGTGGGACTTTCxTCCGTT......................................................	20	1	225.00	0.00	0.00	0.00	225.00
.......................................................................................................TCGGTGGGACTTTCCTCCGTT......................................................	21	1	173.00	0.00	0.00	0.00	173.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTC......................................................	21	1	164.00	0.00	0.00	0.00	164.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTTC....................................................	23	1	139.00	0.00	0.00	11.00	128.00
.......................................................................................................TCGGTGGGACTTTCGTCCGG.......................................................	20	1	94.00	0.00	0.00	0.00	94.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTC.....................................................	22	1	92.00	1.00	0.00	2.00	89.00
.......................................................................................................TCGGTGGGACTTTCGTCCGC.......................................................	20	1	67.00	0.00	0.00	0.00	67.00
.............................................................CCGGATGACTGTTCACAACGACC..............................................................................................	23	1	47.00	0.00	0.00	1.00	46.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTTT....................................................	23	1	43.00	6.00	0.00	8.00	29.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTTCC...................................................	24	1	39.00	0.00	0.00	3.00	36.00
.............................................................CCGGATGACGTTTCACAACGACC..............................................................................................	23	1	35.00	0.00	0.00	0.00	35.00
.............................................................CCGGACGATGGTTCACAACGACC..............................................................................................	23	1	35.00	0.00	0.00	0.00	35.00
.......................................................................................................TCGGTGGGACTTTCGGCCGTT......................................................	21	1	33.00	0.00	0.00	0.00	33.00
.......................................................................................................TCGGTGGGACTTTCGTCC.........................................................	18	1	31.00	0.00	0.00	0.00	31.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTGG.....................................................	22	1	29.00	0.00	0.00	0.00	29.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTG......................................................	21	1	27.00	0.00	0.00	0.00	27.00
.......................................................................................................TCGGTGGGACTTGCGTCCGTT......................................................	21	1	26.00	0.00	0.00	0.00	26.00
.......................................................................................................TCGGTGGGACTTTCATCCGTT......................................................	21	1	25.00	0.00	0.00	1.00	24.00
.......................................................................................................TCGGGGGGACTTTCGTCCGTT......................................................	21	1	23.00	0.00	0.00	0.00	23.00
.......................................................................................................TCGGTGGGGCTTTCGTCCGTT......................................................	21	1	21.00	0.00	0.00	0.00	21.00
.......................................................................................................TCGGTGGGACTTTCGTCCGGT......................................................	21	1	21.00	0.00	0.00	0.00	21.00
.......................................................................................................TCGGTGGGACTTTCxTCCGTTT.....................................................	21	1	20.00	0.00	0.00	0.00	20.00
.......................................................................................................TCGGTGGGACTTACGTCCGTT......................................................	21	1	18.00	0.00	0.00	0.00	18.00
.......................................................................................................TCGGTGGGACTTTCTTCCGTTT.....................................................	22	1	18.00	0.00	0.00	1.00	17.00
.............................................................CCGGATGACxGTTCACAACGACC..............................................................................................	22	1	17.00	0.00	0.00	1.00	16.00
.......................................................................................................TCGGTGGGACTTTCGCCCGTT......................................................	21	1	17.00	0.00	0.00	0.00	17.00
.............................................................CCGGATGACGGTTCACAACG.................................................................................................	20	1	17.00	0.00	0.00	2.00	15.00
.......................................................................................................TCTGTGGGACTTTCGTCCGTT......................................................	21	1	16.00	0.00	0.00	0.00	16.00
.......................................................................................................TCGGTGGGACTTTCGGCCGTTT.....................................................	22	1	15.00	0.00	0.00	1.00	14.00
.............................................................CCGGATGACGGTTCACAACGAC...............................................................................................	22	1	15.00	2.00	6.00	4.00	3.00
.......................................................................................................TCGGTGGGACxTTCCTCCGTT......................................................	20	1	14.00	0.00	0.00	0.00	14.00
.......................................................................................................TCGGTGGGCCTTTCGTCCGTT......................................................	21	1	14.00	0.00	0.00	0.00	14.00
......................................................................................................GTCGGTGGGACTTTCGTCCGTT......................................................	22	1	14.00	0.00	0.00	0.00	14.00
.......................................................................................................TCGGTGGGACTTTxTTCCGTT......................................................	20	1	14.00	0.00	0.00	0.00	14.00
.......................................................................................................TCGGTGGGACTTGCGTCCGTTT.....................................................	22	1	13.00	0.00	0.00	0.00	13.00
.......................................................................................................TCGGTGGGACTTACGTCCGTTT.....................................................	22	1	12.00	0.00	0.00	1.00	11.00
.............................................................CCGGATGACCGTTCACAACGACC..............................................................................................	23	1	12.00	0.00	0.00	0.00	12.00
.......................................................................................................TCGGCGGGACTTTCGTCCGTT......................................................	21	1	12.00	0.00	0.00	2.00	10.00
.......................................................................................................TCGGTGGGACTTTTGTCCGTT......................................................	21	1	11.00	0.00	0.00	0.00	11.00
.......................................................................................................TCGGTGGGACTTTCGTTCGTTT.....................................................	22	1	11.00	2.00	0.00	2.00	7.00
.............................................................CCGGATGACGGTTCACAACGACCT.............................................................................................	24	1	11.00	1.00	0.00	1.00	9.00
.......................................................................................................TCGGTTGGACTTTCGTCCGTT......................................................	21	1	11.00	0.00	0.00	1.00	10.00
.......................................................................................................TCGGAGGGACTTTCGTCCGTT......................................................	21	1	10.00	0.00	0.00	1.00	9.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTCC....................................................	23	1	10.00	0.00	0.00	3.00	7.00
.......................................................................................................TCGGTGGGACTTTCGTCCGGTT.....................................................	22	1	10.00	0.00	0.00	0.00	10.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTG.....................................................	22	1	9.00	0.00	0.00	0.00	9.00
.......................................................................................................TCTGTGGGACTTTCGTCCGTTT.....................................................	22	1	9.00	0.00	0.00	2.00	7.00
.......................................................................................................TCGGTGGGACTTTCCTCCGTC......................................................	21	1	9.00	0.00	0.00	0.00	9.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTA.....................................................	22	1	8.00	0.00	3.00	1.00	4.00
........................................................................................................TCGTGGGACTTTCGTCCGTT......................................................	20	1	8.00	0.00	0.00	0.00	8.00
.......................................................................................................TCGGTAGGACTTTCGTCCGTT......................................................	21	1	8.00	0.00	0.00	1.00	7.00
.......................................................................................................TCGGTGGTACTTTCGTCCGTT......................................................	21	1	8.00	0.00	0.00	0.00	8.00
.......................................................................................................TCAGTGGGACTTTCGTCCGTT......................................................	21	1	8.00	0.00	0.00	1.00	7.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTTA....................................................	23	1	8.00	0.00	1.00	4.00	3.00
.......................................................................................................TCGGTGGGACCTTCGTCCGTT......................................................	21	1	8.00	0.00	0.00	0.00	8.00
......................................................................................................GTCGGTGGGACTTTCGTCCGT.......................................................	21	1	7.00	0.00	0.00	0.00	7.00
.........................................................................................................GGTGGGACTTTCGTCCGTTT.....................................................	20	1	7.00	0.00	0.00	4.00	3.00
.......................................................................................................TCGGTGGGACTTTCGTCCTTTT.....................................................	22	1	7.00	0.00	2.00	2.00	3.00
.......................................................................................................TCAGTGGGACTTTCGTCCGTTT.....................................................	22	1	7.00	0.00	0.00	3.00	4.00
.......................................................................................................TCGGTGGGCCTTTCGTCCGTTT.....................................................	22	1	7.00	0.00	0.00	1.00	6.00
.......................................................................................................TCGGTGGGACTTCCGTCCGTT......................................................	21	1	7.00	0.00	0.00	0.00	7.00
.......................................................................................................TCGTTGGGACTTTCGTCCGTTT.....................................................	22	1	7.00	0.00	1.00	0.00	6.00
.......................................................................................................TCGGTxGGACTTTCGTCCGTT......................................................	20	1	7.00	0.00	0.00	2.00	5.00
.......................................................................................................TCGGTGGGACTTTCCTCCGTTT.....................................................	22	1	7.00	0.00	0.00	1.00	6.00
.......................................................................................................TCGGTGGGAATTTCGTCCGTT......................................................	21	1	6.00	0.00	0.00	4.00	2.00
.......................................................................................................TCGGTGGGACTTTCGTCCGCT......................................................	21	1	6.00	0.00	0.00	0.00	6.00
.......................................................................................................TCGGTGCGACTTTCGTCCGTT......................................................	21	1	6.00	0.00	0.00	0.00	6.00
.......................................................................................................TCGGTGTGACTTTCGTCCGTT......................................................	21	1	6.00	0.00	0.00	1.00	5.00
.............................................................CCGGATGATGGTTCACAACGACC..............................................................................................	23	1	6.00	0.00	1.00	0.00	5.00
.............................................................CCGGATGACTGTTCACAACGAC...............................................................................................	22	1	5.00	0.00	0.00	0.00	5.00
.......................................................................................................TCGGTGGGGCTTTCGTCCGTTT.....................................................	22	1	5.00	0.00	0.00	1.00	4.00
.......................................................................................................TCGGTGGGACTTTCxTCCGT.......................................................	19	1	5.00	0.00	0.00	0.00	5.00
.......................................................................................................TCGGTGGGACTTTCGTCTGTT......................................................	21	1	5.00	0.00	0.00	2.00	3.00
.......................................................................................................TCGGTGGGACTTTCCTCCGT.......................................................	20	1	5.00	0.00	0.00	0.00	5.00
.............................................................CCGGATGACGCTTCACAACGACC..............................................................................................	23	1	5.00	0.00	0.00	0.00	5.00
.......................................................................................................TCGGTGGGACTTTCTTCCGT.......................................................	20	1	5.00	0.00	0.00	0.00	5.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTCT....................................................	23	1	5.00	0.00	0.00	1.00	4.00
.......................................................................................................TCGGTGGGACTTTCGTTCGTT......................................................	21	1	4.00	1.00	0.00	0.00	3.00
.............................................................CCGGATGACGGTTCACAACGACCG.............................................................................................	24	1	4.00	0.00	1.00	1.00	2.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTCT.....................................................	22	1	4.00	0.00	0.00	1.00	3.00
.......................................................................................................TCGGTGGGACCTTCGTCCGTTT.....................................................	22	1	4.00	0.00	0.00	0.00	4.00
.......................................................................................................TCGGTGAGACTTTCGTCCGTTT.....................................................	22	1	4.00	0.00	0.00	0.00	4.00
.............................................................CCGGATGACGGTTCACAACGACA..............................................................................................	23	1	4.00	0.00	0.00	1.00	3.00
.......................................................................................................TCGGTGGGACTTTTGTCCGTTT.....................................................	22	1	4.00	0.00	0.00	0.00	4.00
......................................................................................................CTCGGTGGGACTTTCGTCCGTT......................................................	22	1	4.00	0.00	0.00	0.00	4.00
.......................................................................................................TCGGTGGGATTTTCGTCCGTT......................................................	21	1	4.00	1.00	0.00	0.00	3.00
.......................................................................................................TCGGTGGGACTTTCGTCGTTT......................................................	21	1	4.00	1.00	0.00	3.00	0.00
.......................................................................................................TCGGTGGGACTTTCGTCCATT......................................................	21	1	4.00	0.00	0.00	3.00	1.00
.......................................................................................................TCCGTGGGACTTTCGTCCGTT......................................................	21	1	4.00	0.00	0.00	0.00	4.00
.......................................................................................................TCGGTGGGACTTTCGTCCGCTT.....................................................	22	1	4.00	0.00	1.00	0.00	3.00
.......................................................................................................TCGGTTGGACTTTCCTCCGTT......................................................	21	1	4.00	0.00	0.00	0.00	4.00
.......................................................................................................TCGGTGGGACTTTCxTCCGTC......................................................	20	1	4.00	0.00	0.00	0.00	4.00
.......................................................................................................TCGGCGGGACTTTCGTCCGT.......................................................	20	1	4.00	0.00	0.00	0.00	4.00
.......................................................................................................TCGTTGGGACTTTCGTCCGTT......................................................	21	1	4.00	0.00	0.00	1.00	3.00
.......................................................................................................TCGGGGGGACTTTCGTCCGTTT.....................................................	22	1	4.00	0.00	0.00	0.00	4.00

droVir3

T--G---------------------------------------GTTTATGGTACGGTGCGACCGGATGATGGTTCACAACGACCGTGCA-TACTTTTAACTGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAACGATTTATCA----------------A-ATCAG--A	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
.......................................................................................................TCGGTGGGACTTTCGTCCGTT......................................................	21	1	5547.00	37.00	263.00	0.00	1624.00	3623.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTT.....................................................	22	1	2153.00	239.00	491.00	5.00	564.00	854.00
.............................................................CCGGATGATGGTTCACAACGACC..............................................................................................	23	1	890.00	60.00	27.00	22.00	464.00	317.00
.......................................................................................................TCGGTGGGACTTTCGTCCGT.......................................................	20	1	551.00	1.00	3.00	0.00	155.00	392.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTC......................................................	21	1	201.00	0.00	2.00	0.00	87.00	112.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTTC....................................................	23	1	179.00	7.00	2.00	0.00	130.00	40.00
.......................................................................................................TCGGTGGGACTTTCGTCCG........................................................	19	1	156.00	0.00	0.00	0.00	31.00	125.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTC.....................................................	22	1	152.00	2.00	10.00	0.00	111.00	29.00
.......................................................................................................TCGGTGGGCCTTTCGTCCGTT......................................................	21	1	107.00	0.00	1.00	0.00	34.00	72.00
.......................................................................................................TCGGTGGGACTTTCGTCCGG.......................................................	20	1	103.00	0.00	0.00	0.00	34.00	69.00
.......................................................................................................TCGGTGGGACTTTCTTCCGTT......................................................	21	1	92.00	0.00	0.00	0.00	34.00	58.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTTCC...................................................	24	1	90.00	1.00	1.00	0.00	76.00	12.00
.......................................................................................................TCGGTGGGACTTTCGTCC.........................................................	18	1	83.00	0.00	1.00	0.00	19.00	63.00
.......................................................................................................TCGGTGGGACTTTCGTCCGC.......................................................	20	1	54.00	0.00	0.00	0.00	15.00	39.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTTT....................................................	23	1	50.00	9.00	19.00	1.00	15.00	6.00
.............................................................CCGGATGATGGTTCACAACG.................................................................................................	20	1	49.00	1.00	4.00	0.00	9.00	35.00
.............................................................CCGGATGATGGTTCACAACGAC...............................................................................................	22	1	48.00	9.00	5.00	0.00	17.00	17.00
.......................................................................................................TCGGTGGGACTTTCxTCCGTT......................................................	20	1	47.00	0.00	0.00	0.00	21.00	26.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTTTC...................................................	24	1	44.00	4.00	3.00	0.00	26.00	11.00
.......................................................................................................TCGGTGGGCCTTTCGTCCGTTT.....................................................	22	1	39.00	1.00	3.00	0.00	19.00	16.00
.............................................................CCGGATGATGGTTCACAACGACCT.............................................................................................	24	1	33.00	0.00	0.00	0.00	20.00	13.00
.......................................................................................................TCGGTGGGACTTTCCTCCGTT......................................................	21	1	30.00	0.00	0.00	0.00	11.00	19.00
.............................................................CCGGATGATGGTTCACAACGACT..............................................................................................	23	1	25.00	0.00	0.00	0.00	14.00	11.00
.......................................................................................................TCGGTGGGACTTTCGGCCGTT......................................................	21	1	25.00	0.00	4.00	0.00	5.00	16.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTG......................................................	21	1	24.00	0.00	1.00	0.00	6.00	17.00
.............................................................CCGGATGATGTTTCACAACGACC..............................................................................................	23	1	21.00	0.00	0.00	0.00	12.00	9.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTA.....................................................	22	1	20.00	3.00	11.00	0.00	1.00	5.00
.......................................................................................................TCGGTGGGGCTTTCGTCCGTT......................................................	21	1	18.00	0.00	0.00	0.00	5.00	13.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTGG.....................................................	22	1	18.00	0.00	0.00	0.00	13.00	5.00
.............................................................CCGGATGATTGTTCACAACGACC..............................................................................................	23	1	15.00	0.00	0.00	0.00	13.00	2.00
.......................................................................................................TCGGTGGGCCTTTCGTCCGT.......................................................	20	1	15.00	0.00	0.00	0.00	1.00	14.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTG.....................................................	22	1	13.00	2.00	6.00	0.00	0.00	5.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTTA....................................................	23	1	12.00	5.00	6.00	0.00	1.00	0.00
......................................................................................................GTCGGTGGGACTTTCGTCCGTT......................................................	22	1	10.00	0.00	0.00	0.00	1.00	9.00
.............................................................CCGGATGATGGTTCACAACGACA..............................................................................................	23	1	10.00	0.00	0.00	0.00	7.00	3.00
......................................................................................................GTCGGTGGGACTTTCGTCCGT.......................................................	21	1	10.00	0.00	0.00	0.00	2.00	8.00
.......................................................................................................TCGGTGGGACTTTCGTCCGGT......................................................	21	1	10.00	0.00	0.00	0.00	6.00	4.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTTTT...................................................	24	1	8.00	2.00	2.00	0.00	3.00	1.00
.......................................................................................................TCGGTGGGACTTTCGTCCGCT......................................................	21	1	8.00	0.00	5.00	0.00	1.00	2.00
.......................................................................................................TCGGTGGGACCTTCGTCCGTT......................................................	21	1	8.00	0.00	0.00	0.00	4.00	4.00
.............................................................CCGGATGATxGTTCACAACGACC..............................................................................................	22	1	8.00	0.00	0.00	0.00	4.00	4.00
.......................................................................................................TCGGCGGGACTTTCGTCCGTT......................................................	21	1	7.00	0.00	1.00	0.00	5.00	1.00
.......................................................................................................TCGGGGGGACTTTCGTCCGTTT.....................................................	22	1	7.00	0.00	5.00	0.00	2.00	0.00
.......................................................................................................TCGGTGGGACTTTCGTCCGCTT.....................................................	22	1	7.00	0.00	6.00	0.00	0.00	1.00
.......................................................................................................TCGGTGGGACTTTTGTCCGTT......................................................	21	1	7.00	0.00	1.00	0.00	1.00	5.00
.......................................................................................................TCGGTGGGACTTTCGTCTT........................................................	19	1	7.00	0.00	0.00	0.00	0.00	7.00
.......................................................................................................TCGGTGGGACTTTCGCCCGTT......................................................	21	1	6.00	0.00	0.00	0.00	1.00	5.00
.............................................................CCGGATGATCGTTCACAACGACC..............................................................................................	23	1	6.00	0.00	0.00	0.00	5.00	1.00
.............................................................CCGGATGATGGTTCACAACGACCG.............................................................................................	24	1	5.00	1.00	0.00	0.00	3.00	1.00
.......................................................................................................TCGGTGTGACTTTCGTCCGTT......................................................	21	1	5.00	0.00	0.00	0.00	3.00	2.00
.............................................................CCGGATGATGGTTCACAACGA................................................................................................	21	1	5.00	2.00	2.00	0.00	1.00	0.00
......................................................................................................CTCGGTGGGACTTTCGTCCGTT......................................................	22	1	5.00	0.00	0.00	0.00	1.00	4.00
.......................................................................................................TCGGTGGGACTTTCGCCCGTTT.....................................................	22	1	5.00	1.00	2.00	0.00	2.00	0.00
.........................................................................................................GGTGGGACTTTCGTCCGTT......................................................	19	1	5.00	0.00	2.00	0.00	0.00	3.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTA......................................................	21	1	5.00	0.00	0.00	0.00	1.00	4.00
.......................................................................................................TCGGTGGGACTTTCTTCCGTTT.....................................................	22	1	4.00	1.00	0.00	0.00	2.00	1.00
.......................................................................................................TCGGTGGGCCTTTCGTCCGTTTT....................................................	23	1	4.00	0.00	1.00	0.00	1.00	2.00
.......................................................................................................TCGGTGGGCCTTTCGTCCGC.......................................................	20	1	4.00	0.00	0.00	0.00	0.00	4.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTTG....................................................	23	1	4.00	0.00	3.00	0.00	0.00	1.00
.......................................................................................................TCGGTGGCACTTTCGTCCGTT......................................................	21	1	4.00	0.00	0.00	0.00	1.00	3.00
.......................................................................................................TCGGTGGGACTTTCGTCA.........................................................	18	1	4.00	0.00	0.00	0.00	2.00	2.00
.........................................................................................................GGTGGGACTTTCGTCCGTTT.....................................................	20	1	4.00	1.00	3.00	0.00	0.00	0.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTCT.....................................................	22	1	4.00	0.00	1.00	0.00	2.00	1.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTTAA...................................................	24	1	4.00	2.00	2.00	0.00	0.00	0.00
.............................................................CCGGACGATGGTTCACAACGACC..............................................................................................	23	1	4.00	0.00	0.00	0.00	2.00	2.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTTCT...................................................	24	1	4.00	1.00	1.00	0.00	2.00	0.00
.......................................................................................................TCGGAGGGACTTTCGTCCGTTT.....................................................	22	1	4.00	0.00	3.00	0.00	1.00	0.00
......................................................................................................GTCGGTGGGACTTTCGTCCG........................................................	20	1	4.00	0.00	0.00	0.00	0.00	4.00
.............................................................CCGGATGATGCTTCACAACGACC..............................................................................................	23	1	4.00	0.00	0.00	0.00	1.00	3.00
.......................................................................................................TCGGTGGGTCTTTCGTCCGTTT.....................................................	22	1	4.00	0.00	3.00	0.00	1.00	0.00
.......................................................................................................TCGGTGCGACTTTCGTCCGTT......................................................	21	1	4.00	0.00	2.00	0.00	0.00	2.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTTAC...................................................	24	1	4.00	0.00	0.00	0.00	2.00	2.00
.......................................................................................................TCTGTGGGACTTTCGTCCGTTT.....................................................	22	1	4.00	1.00	0.00	0.00	2.00	1.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTTTTC..................................................	25	1	3.00	1.00	0.00	0.00	2.00	0.00
.......................................................................................................TCGGTGGGACTTTCCTCCGTC......................................................	21	1	3.00	0.00	0.00	0.00	2.00	1.00
.......................................................................................................TCGGTGGGACTTTCTTCCGTC......................................................	21	1	3.00	0.00	0.00	0.00	1.00	2.00
.......................................................................................................TCGGTGGGACTTTCGTCT.........................................................	18	1	3.00	0.00	0.00	0.00	0.00	3.00
.............................................................CCGGATGATGGTTCACAACGACCC.............................................................................................	24	1	3.00	0.00	0.00	0.00	1.00	2.00
.......................................................................................................TCGGTGGGACTTTCATCCGTT......................................................	21	1	3.00	0.00	0.00	0.00	1.00	2.00
.......................................................................................................TCGGTGGGACTTTCGTCCGGTT.....................................................	22	1	3.00	0.00	0.00	0.00	1.00	2.00
.......................................................................................................TCGGCGGGACTTTCGTCCGTTT.....................................................	22	1	3.00	0.00	3.00	0.00	0.00	0.00
.......................................................................................................TCTGTGGGACTTTCGTCCGTT......................................................	21	1	3.00	0.00	0.00	0.00	2.00	1.00
.......................................................................................................TCGGTGGGACTTTCGTTCGTT......................................................	21	1	3.00	0.00	0.00	0.00	2.00	1.00
.......................................................................................................TCGGTGGGCCTTTCTTCCGTT......................................................	21	1	3.00	0.00	0.00	0.00	0.00	3.00
.......................................................................................................TCGGTGGGACTTTCTTCCGT.......................................................	20	1	3.00	0.00	1.00	0.00	1.00	1.00
.......................................................................................................TCGGTGGGACTTTxTTCCGTT......................................................	20	1	3.00	0.00	0.00	0.00	0.00	3.00
.......................................................................................................TCGGTTGGACTTTCGTCCGTT......................................................	21	1	3.00	0.00	0.00	0.00	0.00	3.00
.......................................................................................................TCGGTGGGACTTTCGGCCGTTT.....................................................	22	1	3.00	0.00	0.00	0.00	1.00	2.00
.......................................................................................................TCGGTGGGACTTTCGTCCGCC......................................................	21	1	3.00	0.00	0.00	0.00	1.00	2.00
........................................................................................................CGGTGGGACTTTCGTCCGTT......................................................	20	1	3.00	0.00	0.00	0.00	3.00	0.00
.......................................................................................................TCGGTxxGACTTTCGTCCGTT......................................................	19	1	3.00	0.00	0.00	0.00	2.00	1.00
.......................................................................................................TCGGTGAGACTTTCGTCCGTT......................................................	21	1	3.00	0.00	0.00	0.00	2.00	1.00
.......................................................................................................TCAGTGGGACTTTCGTCCGTTT.....................................................	22	1	3.00	0.00	3.00	0.00	0.00	0.00
.......................................................................................................TCGGTGGGACxTTCCTCCGTT......................................................	20	1	3.00	0.00	0.00	0.00	0.00	3.00
.......................................................................................................TCGGTGGGACTTTCGACCGTT......................................................	21	1	3.00	0.00	1.00	0.00	0.00	2.00
.......................................................................................................TCGGTGTGACTTTCGTCCGTTT.....................................................	22	1	3.00	0.00	0.00	0.00	0.00	3.00
.......................................................................................................TCGGTGGGACTTTCGTCCATTT.....................................................	22	1	3.00	1.00	1.00	0.00	0.00	1.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTAA.....................................................	22	1	3.00	1.00	1.00	0.00	0.00	1.00
.......................................................................................................TCGGTGGGACTTTCGTCCGA.......................................................	20	1	3.00	0.00	0.00	0.00	0.00	3.00
.......................................................................................................TCGGTGGGACTTTAGTCCGTTT.....................................................	22	1	3.00	0.00	3.00	0.00	0.00	0.00
......................................................................................................GTCGGTGGGACTTTCGTCCGC.......................................................	21	1	3.00	0.00	0.00	0.00	2.00	1.00

droMoj3

T--G---------------------------------------GTTTATGGTACGGTGCGACCGGATGATGGTTCACAACGACCGTACAGTTTTTTCAACGGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAACGATTTATCAGCA-------------A-ATCAG--A	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
.......................................................................................................TCGGTGGGACTTTCGTCCGTTT.....................................................	22	1	1467.00	252.00	613.00	599.00	3.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTT......................................................	21	1	1244.00	84.00	565.00	595.00	0.00
.............................................................CCGGATGATGGTTCACAACGACC..............................................................................................	23	1	233.00	88.00	50.00	41.00	54.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTTT....................................................	23	1	78.00	7.00	34.00	37.00	0.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTTC....................................................	23	1	60.00	12.00	29.00	19.00	0.00
.......................................................................................................TCGGTGGGACTTTCGTCCGT.......................................................	20	1	44.00	2.00	26.00	16.00	0.00
.............................................................CCGGATGATGGTTCACAACGAC...............................................................................................	22	1	27.00	9.00	9.00	8.00	1.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTC......................................................	21	1	27.00	0.00	11.00	16.00	0.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTA.....................................................	22	1	21.00	3.00	10.00	8.00	0.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTTTC...................................................	24	1	21.00	4.00	8.00	9.00	0.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTTA....................................................	23	1	18.00	4.00	6.00	8.00	0.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTG.....................................................	22	1	13.00	1.00	8.00	4.00	0.00
.......................................................................................................TCGGAGGGACTTTCGTCCGTTT.....................................................	22	1	11.00	0.00	10.00	1.00	0.00
.......................................................................................................TCGGTGGGACTTTCGTCCGGTT.....................................................	22	1	10.00	0.00	0.00	10.00	0.00
.......................................................................................................TCGGGGGGACTTTCGTCCGTTT.....................................................	22	1	10.00	1.00	5.00	4.00	0.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTC.....................................................	22	1	9.00	0.00	5.00	4.00	0.00
.........................................................................................................GGTGGGACTTTCGTCCGTTT.....................................................	20	1	8.00	0.00	5.00	3.00	0.00
.......................................................................................................TCGGCGGGACTTTCGTCCGTTT.....................................................	22	1	8.00	1.00	5.00	2.00	0.00
.......................................................................................................TCGGTGGGACTTTCGTACGTTT.....................................................	22	1	7.00	0.00	5.00	2.00	0.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTTTT...................................................	24	1	7.00	1.00	1.00	5.00	0.00
.......................................................................................................TCGGTGGGACTTTCGTCCGCTT.....................................................	22	1	7.00	0.00	2.00	5.00	0.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTTCC...................................................	24	1	7.00	1.00	3.00	3.00	0.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTTGT...................................................	24	1	7.00	0.00	3.00	4.00	0.00
.......................................................................................................TCGGTGGGTCTTTCGTCCGTT......................................................	21	1	6.00	0.00	4.00	2.00	0.00
.......................................................................................................TCGGAGGGACTTTCGTCCGTT......................................................	21	1	6.00	0.00	5.00	1.00	0.00
.......................................................................................................TCGGTGGGACGTTCGTCCGTT......................................................	21	1	6.00	0.00	2.00	4.00	0.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTTG....................................................	23	1	6.00	0.00	3.00	3.00	0.00
.......................................................................................................TCGGTGGGACTTTTGTCCGTTT.....................................................	22	1	6.00	1.00	2.00	3.00	0.00
.......................................................................................................TCGGTGGGACCTTCGTCCGTTT.....................................................	22	1	6.00	0.00	5.00	1.00	0.00
.......................................................................................................TCGGTGGGACTTTCGTCCTTT......................................................	21	1	5.00	0.00	2.00	3.00	0.00
.......................................................................................................TCGGTGGGACTTTCGTCCGCT......................................................	21	1	5.00	0.00	1.00	4.00	0.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTA......................................................	21	1	5.00	0.00	3.00	2.00	0.00
.............................................................CCGGATGATGGTTCACAACG.................................................................................................	20	1	5.00	1.00	2.00	2.00	0.00
.......................................................................................................TCGGTGGGACTTTCGCCCGTT......................................................	21	1	5.00	0.00	2.00	3.00	0.00
.......................................................................................................TCGGCGGGACTTTCGTCCGTT......................................................	21	1	5.00	0.00	2.00	3.00	0.00
.........................................................................................................GGTGGGACTTTCGTCCGTT......................................................	19	1	5.00	0.00	2.00	3.00	0.00
.......................................................................................................TCGGTGGGACCTTCGTCCGTT......................................................	21	1	4.00	0.00	2.00	2.00	0.00
.......................................................................................................TCGGTGGGACTTTCGTCCTTTT.....................................................	22	1	4.00	0.00	1.00	3.00	0.00
.......................................................................................................TCAGTGGGACTTTCGTCCGTTT.....................................................	22	1	4.00	0.00	0.00	4.00	0.00
.......................................................................................................TCGGTGGGACTTTTGTCCGTT......................................................	21	1	4.00	0.00	0.00	4.00	0.00
.......................................................................................................TCGGGGGGACTTTCGTCCGTT......................................................	21	1	4.00	0.00	3.00	1.00	0.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTTTG...................................................	24	1	4.00	1.00	3.00	0.00	0.00
.......................................................................................................TCGGTGGGACTTTCGTTCGTTT.....................................................	22	1	4.00	2.00	1.00	1.00	0.00
.............................................................CCGGATGATGGTTCACAACGCCC..............................................................................................	23	1	4.00	0.00	1.00	3.00	0.00
.......................................................................................................TCGGTGAGACTTTCGTCCGTT......................................................	21	1	4.00	0.00	0.00	4.00	0.00
.......................................................................................................TAGGTGGGACTTTCGTCCGTT......................................................	21	1	4.00	0.00	3.00	1.00	0.00
.......................................................................................................TCGGTGGGACGTTCGTCCGTTT.....................................................	22	1	4.00	0.00	2.00	2.00	0.00
.......................................................................................................TCGGTGGGGCTTTCGTCCGTTT.....................................................	22	1	4.00	0.00	0.00	4.00	0.00
......................................................................................................CTCGGTGGGACTTTCGTCCGTT......................................................	22	1	3.00	0.00	1.00	2.00	0.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTTCTC..................................................	25	1	3.00	1.00	2.00	0.00	0.00
.......................................................................................................TCGGAGGGACGTTCGTCCGTTT.....................................................	22	1	3.00	0.00	3.00	0.00	0.00
.......................................................................................................TCGGTGGGACTTTCGCCCGTTT.....................................................	22	1	3.00	0.00	3.00	0.00	0.00
.......................................................................................................TCGGTGGGACTTTCGTCCATTT.....................................................	22	1	3.00	0.00	1.00	2.00	0.00
.......................................................................................................TCGGTGGGACTTTAGTCCGTTT.....................................................	22	1	3.00	0.00	1.00	2.00	0.00
.......................................................................................................TCGGTGGGACTTTCGGCCGTT......................................................	21	1	3.00	0.00	2.00	1.00	0.00
.......................................................................................................TCGGTGGGACTTTCTTCCGTTT.....................................................	22	1	3.00	0.00	1.00	2.00	0.00
.......................................................................................................TCGGTAGGACTTTCGTCCGTT......................................................	21	1	3.00	0.00	0.00	3.00	0.00
.......................................................................................................TCGGTGGGACTTTAGTCCGTT......................................................	21	1	3.00	0.00	1.00	2.00	0.00
.......................................................................................................TCGGTGCGACTTTCGTCCGCT......................................................	21	1	3.00	0.00	1.00	2.00	0.00
.......................................................................................................TCGGTGGGACTTTCGTCTGTTT.....................................................	22	1	3.00	0.00	2.00	1.00	0.00
.......................................................................................................TCGGTGGGACTTTCGGCCGTTT.....................................................	22	1	3.00	0.00	1.00	2.00	0.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTTTTC..................................................	25	1	3.00	1.00	0.00	2.00	0.00
.......................................................................................................TCGGTxGGACTTTCGTCCGTTT.....................................................	21	1	3.00	2.00	0.00	1.00	0.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTTAA...................................................	24	1	3.00	0.00	2.00	1.00	0.00
.......................................................................................................TCAGTGGGACTTTCGTCCGTT......................................................	21	1	3.00	0.00	0.00	3.00	0.00

droGri2

T--GGTC--------------------------------------TGATGGTACGGTGCGACCGGATGACGGTTCACAACGACCGTGCT-TATTTTTAACTGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAGCGATTTATCA----------------A-ATCAG--T	Size	Hit Count	Total Norm	V109 Male body
.......................................................................................................TCGGTGGGACTTTCGTCCGTTT.....................................................	22	1	228.00	228.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTT......................................................	21	1	38.00	38.00
.............................................................CCGGATGACGGTTCACAACGACC..............................................................................................	23	1	13.00	13.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTTT....................................................	23	1	6.00	6.00
.........................................................................................................GGTGGGACTTTCGTCCGTTT.....................................................	20	1	3.00	3.00
.......................................................................................................TCGGTGGGACTTTCGTCAGTTT.....................................................	22	1	3.00	3.00
.......................................................................................................TCGGTGGGACTTTCGTCGGTTT.....................................................	22	1	2.00	2.00
.......................................................................................................TCTGTGGGACTTTCGTCCGTTT.....................................................	22	1	2.00	2.00
.......................................................................................................TCGGTGGGATTTTCGTCCGTTTAT...................................................	24	1	1.00	1.00
.......................................................................................................TCGGTGGGACCTTCGTCCGTTT.....................................................	22	1	1.00	1.00
.......................................................................................................TCGGTAGGACTTTCGTCCGTTT.....................................................	22	1	1.00	1.00
.......................................................................................................TCGGTGGGACTTTCGTCCTTTT.....................................................	22	1	1.00	1.00
.......................................................................................................TCGGTGGGACTTTCGTCTGTTT.....................................................	22	1	1.00	1.00
.......................................................................................................TCGGTGGGACxTTCGTCCGTTT.....................................................	21	1	1.00	1.00
.......................................................................................................TCGGGGGGACTTTCGTCCGTTT.....................................................	22	1	1.00	1.00
.......................................................................................................TCCGTGGGACTTTCGCCCGTTT.....................................................	22	1	1.00	1.00
.............................................................CCGGATGACGGTTCACACCGACC..............................................................................................	23	1	1.00	1.00
.............................................................CCGGATGATGGTTCACAACGACC..............................................................................................	23	1	1.00	1.00
.......................................................................................................TCGATGGGACTTTCGTCCGGTT.....................................................	22	1	1.00	1.00
.......................................................................................................TCGGTGGGAATTTCGTCCGTTT.....................................................	22	1	1.00	1.00
.......................................................................................................TCGGTGGGACTTTCGTCTGTT......................................................	21	1	1.00	1.00
.......................................................................................................TCGGTGGGCCTTTCGTCCGTTT.....................................................	22	1	1.00	1.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTCT.....................................................	22	1	1.00	1.00
.......................................................................................................TCCGTGGGACTTTCGTCCGTTT.....................................................	22	1	1.00	1.00
.......................................................................................................TCGGTGGGACTTTCGTCCGCTT.....................................................	22	1	1.00	1.00
.......................................................................................................TCGGTGGGACTTTCGCCCGTTT.....................................................	22	1	1.00	1.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTTA....................................................	23	1	1.00	1.00
.......................................................................................................TCGGTGAGACTTTCGTCCGTTT.....................................................	22	1	1.00	1.00
.......................................................................................................TCGGTGGGACTTTCGTCCGT.......................................................	20	1	1.00	1.00
.......................................................................................................TCGGCGGGACTTTCGTCCGTTT.....................................................	22	1	1.00	1.00
.......................................................................................................TCGGTGGCTCTTTCGTCCGTTT.....................................................	22	1	1.00	1.00
.......................................................................................................TCGGTGGGACTTTCGTCCGTTTTT...................................................	24	1	1.00	1.00
.......................................................................................................TCGGAGGGACTTTCGTCCGTTT.....................................................	22	1	1.00	1.00

12-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droAna3	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image

20-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droEug1	droBia1	droTak1	droEle1	droRho1	droFic1	droKik1	droAna3	droBip1	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image