Possible Orthologs for dme-mir-278

droSim1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	chr2R:10277194-10277321 +	97.67	TGATACGAGACCATGGTAATGGTACGGTGCGACCGGATGATGGTTCACAACGACCGTGTCATTTAAACGGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAACGATTTATCAGTGTCCGT TGATACGAGACCATGGTAATGGTACGGTGCGACCGGATGATGGTTCACAACGACCGTGTCCTTTAAACGGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAACGATTTATCAGTGTCCGT Size Hit Count Total Norm V044 Embryo M023 Head M024 Male body M025 Embryo .......................................................................TCGGTGGGACTTTCGTCCGTT.................................... 21 1 41770.00 1.00 36051.00 5610.00 108.00 .......................................................................TCGGTGGGACTTTCGTCCGTTT................................... 22 1 10899.00 4.00 8973.00 1810.00 112.00 ................................CCGGATGATGGTTCACAACGACC......................................................................... 23 1 4615.00 68.00 3700.00 577.00 270.00 .......................................................................TCGGTGGGACTTTCGTCCGT..................................... 20 1 3452.00 0.00 2957.00 489.00 6.00 .......................................................................TCGGTGGGACTTTCGTCCGTC.................................... 21 1 1141.00 0.00 1011.00 125.00 5.00 .......................................................................TCGGTGGGACTTTCGTCCG...................................... 19 1 953.00 0.00 831.00 119.00 3.00 .......................................................................TCGGTGGGACTTTCTTCCGTT.................................... 21 1 827.00 0.00 730.00 89.00 8.00 ................................CCGGATGATGGTTCACAACG............................................................................ 20 1 788.00 0.00 658.00 129.00 1.00 .......................................................................TCGGTGGGACTTTCGTCCGG..................................... 20 1 520.00 0.00 424.00 94.00 2.00 .......................................................................TCGGTGGGACTTTCGTCCGC..................................... 20 1 443.00 0.00 398.00 45.00 0.00 .......................................................................TCGGTGGGACTTTCxTCCGTT.................................... 20 1 421.00 0.00 386.00 34.00 1.00 .......................................................................TCGGTGGGACTTTCCTCCGTT.................................... 21 1 356.00 0.00 316.00 35.00 5.00 ................................CCGGATGATGGTTCACAACGAC.......................................................................... 22 1 253.00 3.00 205.00 42.00 3.00 .......................................................................TCGGTGGGACTTTCGTCC....................................... 18 1 239.00 0.00 208.00 30.00 1.00 ................................CCGGATGATGGTTCACAACGACA......................................................................... 23 1 236.00 0.00 205.00 30.00 1.00 .......................................................................TCGGTGGGACTTTCGTCCGTTC................................... 22 1 204.00 0.00 178.00 25.00 1.00 .......................................................................TCGGTGGGACTTTCGTCCGTG.................................... 21 1 134.00 0.00 110.00 23.00 1.00 ................................CCGGATGATTGTTCACAACGACC......................................................................... 23 1 112.00 0.00 94.00 4.00 14.00 ................................CCGGATGATGGTTCACAACGA........................................................................... 21 1 102.00 0.00 87.00 15.00 0.00 .......................................................................TCGGTGGGACTTTCGTCCGTGG................................... 22 1 94.00 0.00 73.00 18.00 3.00 .......................................................................TCGGTGGGACTTTCGGCCGTT.................................... 21 1 84.00 0.00 69.00 15.00 0.00 ................................CCGGATGATGGTTCACAACGACT......................................................................... 23 1 83.00 0.00 70.00 13.00 0.00 .......................................................................TCGGTGGGACTTTCGTCCGTTTT.................................. 23 1 82.00 0.00 67.00 15.00 0.00 .......................................................................TCGGTGGGGCTTTCGTCCGTT.................................... 21 1 80.00 0.00 68.00 11.00 1.00 ................................CCGGATGATGTTTCACAACGACC......................................................................... 23 1 76.00 0.00 63.00 4.00 9.00 .......................................................................TCGGTGGGACTTTCGTCCGTA.................................... 21 1 72.00 0.00 67.00 5.00 0.00 .......................................................................TCGGTGGGACTTTCGTCCGTTTC.................................. 23 1 60.00 0.00 55.00 5.00 0.00 .......................................................................TCTGTGGGACTTTCGTCCGTT.................................... 21 1 60.00 0.00 51.00 9.00 0.00 .......................................................................TCGGGGGGACTTTCGTCCGTT.................................... 21 1 56.00 0.00 48.00 8.00 0.00 ................................CCGGACGATGGTTCACAACGACC......................................................................... 23 1 54.00 0.00 52.00 1.00 1.00 ................................CCGGATGATGGTTCACAACGACCT........................................................................ 24 1 53.00 0.00 46.00 5.00 2.00 ................................CCGGATGATCGTTCACAACGACC......................................................................... 23 1 50.00 0.00 44.00 2.00 4.00 ................................CCGGATGATxGTTCACAACGACC......................................................................... 22 1 49.00 0.00 34.00 3.00 12.00 .......................................................................TCGGTTGGACTTTCGTCCGTT.................................... 21 1 48.00 0.00 41.00 7.00 0.00 .......................................................................TCGGTGGGACTTTCATCCGTT.................................... 21 1 48.00 0.00 43.00 4.00 1.00 .......................................................................TCGGTGGGACTTTCGTCCGCT.................................... 21 1 46.00 0.00 37.00 9.00 0.00 .......................................................................TCGGTGGGACTTTCGTCCGGT.................................... 21 1 42.00 0.00 32.00 9.00 1.00 .......................................................................TCGGTGGGACTTTTGTCCGTT.................................... 21 1 38.00 0.00 29.00 9.00 0.00 .......................................................................TCGGTGGGACTTTCTTCCGTTT................................... 22 1 37.00 0.00 30.00 6.00 1.00 .......................................................................TCGGTGGGACTTTCGCCCGTT.................................... 21 1 33.00 0.00 28.00 5.00 0.00 .......................................................................TCGGCGGGACTTTCGTCCGTT.................................... 21 1 32.00 0.00 28.00 4.00 0.00 .......................................................................TCGGTGGGCCTTTCGTCCGTT.................................... 21 1 29.00 0.00 27.00 2.00 0.00 .......................................................................TCGGTGGGACTTTCGTCCGA..................................... 20 1 28.00 0.00 21.00 7.00 0.00 .......................................................................TCGGTGGGACCTTCGTCCGTT.................................... 21 1 27.00 0.00 24.00 3.00 0.00 .......................................................................TCGGTxxGACTTTCGTCCGTT.................................... 19 1 26.00 0.00 23.00 3.00 0.00 .......................................................................TTGGTGGGACTTTCGTCCGTT.................................... 21 1 23.00 0.00 18.00 4.00 1.00 .......................................................................TCGGTGGGACxTTCCTCCGTT.................................... 20 1 23.00 0.00 20.00 3.00 0.00 .......................................................................TCGGTGGGACTTTCGTCTGTT.................................... 21 1 23.00 0.00 17.00 6.00 0.00 .......................................................................TCGGTGGGACTTTCGTCCTTTT................................... 22 1 23.00 0.00 19.00 3.00 1.00 .......................................................................TCGGTGGTACTTTCGTCCGTT.................................... 21 1 23.00 0.00 20.00 3.00 0.00 .......................................................................TCGGTGGGACTTTCGTCCGTTA................................... 22 1 22.00 0.00 17.00 5.00 0.00 .......................................................................TCGGTxGGACTTTCGTCCGTT.................................... 20 1 22.00 0.00 20.00 2.00 0.00 .......................................................................TCGGTGGGACTTTCxTCCGTTT................................... 21 1 21.00 0.00 18.00 2.00 1.00 .......................................................................TCTGTGGGACTTTCGTCCGTTT................................... 22 1 21.00 0.00 21.00 0.00 0.00 .........................................................................GGTGGGACTTTCGTCCGTT.................................... 19 1 20.00 0.00 17.00 3.00 0.00 .......................................................................TCGGTGGGACTTTxTTCCGTT.................................... 20 1 20.00 0.00 17.00 3.00 0.00 .......................................................................TCGGTGGGACTTTCTTCCGT..................................... 20 1 20.00 0.00 20.00 0.00 0.00 .......................................................................TCGGTGGGACTTTCGGCCGTTT................................... 22 1 20.00 0.00 16.00 4.00 0.00 ......................................................................CTCGGTGGGACTTTCGTCCGTT.................................... 22 1 19.00 0.00 17.00 2.00 0.00 .......................................................................TCGGTGGGACTTTCGTCCGTTTA.................................. 23 1 18.00 0.00 13.00 4.00 1.00 .......................................................................TCCGTGGGACTTTCGTCCGTT.................................... 21 1 17.00 0.00 17.00 0.00 0.00 ................................CCGGATTATGGTTCACAACGACC......................................................................... 23 1 17.00 0.00 13.00 2.00 2.00 .......................................................................TCGGTGGGACTTTCGTTCGTT.................................... 21 1 17.00 0.00 15.00 2.00 0.00 .................................CGGATGATGGTTCACAACGACC......................................................................... 22 1 16.00 0.00 14.00 1.00 1.00 .......................................................................TCGGTGTGACTTTCGTCCGTT.................................... 21 1 16.00 0.00 10.00 6.00 0.00 .......................................................................TCGGTGGGACTTTCGTCT....................................... 18 1 16.00 0.00 10.00 6.00 0.00 .......................................................................TCGGTGGGACTTTCTTCCGTC.................................... 21 1 15.00 0.00 13.00 2.00 0.00 .......................................................................TCGGTGCGACTTTCGTCCGTT.................................... 21 1 15.00 0.00 14.00 1.00 0.00 ................................CCGGATGATTGTTCACAACGAC.......................................................................... 22 1 15.00 0.00 13.00 2.00 0.00 ........................................................................CGGTGGGACTTTCGTCCGTT.................................... 20 1 14.00 0.00 12.00 2.00 0.00 .......................................................................TCGGTGGGATTTTCGTCCGTT.................................... 21 1 14.00 0.00 13.00 1.00 0.00 .......................................................................TCGGTGAGACTTTCGTCCGTT.................................... 21 1 14.00 0.00 12.00 2.00 0.00 .......................................................................TCGGTGGGACTTTCGTCCGGTT................................... 22 1 13.00 0.00 9.00 4.00 0.00 .......................................................................TCGTTGGGACTTTCGTCCGTT.................................... 21 1 13.00 0.00 11.00 2.00 0.00 .......................................................................CCGGTGGGACTTTCGTCCGTT.................................... 21 1 13.00 0.00 12.00 0.00 1.00 .......................................................................TCGGTGGGACTTTCxTCCGT..................................... 19 1 13.00 0.00 12.00 1.00 0.00 ................................CCGGATGATGCTTCACAACGACC......................................................................... 23 1 13.00 0.00 9.00 1.00 3.00 .......................................................................TCGGTGGGACTTTCCTCCGTC.................................... 21 1 13.00 0.00 11.00 1.00 1.00 .......................................................................TCGGTCGGACTTTCGTCCGTT.................................... 21 1 12.00 0.00 12.00 0.00 0.00 .......................................................................TCGGAGGGACTTTCGTCCGTT.................................... 21 1 12.00 0.00 11.00 1.00 0.00 .......................................................................TCGGTGGGACTTTCGTCCATT.................................... 21 1 12.00 0.00 10.00 2.00 0.00 .......................................................................TCGGTGGGGCTTTCGTCCGTTT................................... 22 1 12.00 0.00 10.00 2.00 0.00 .......................................................................TCGGTGGGACCTTCGTCCGTTT................................... 22 1 11.00 0.00 10.00 1.00 0.00 .......................................................................TCGGTTGGACTTTCGTCCGTTT................................... 22 1 11.00 0.00 8.00 3.00 0.00 .......................................................................TCGGTGGGACTTTCCTCCGT..................................... 20 1 11.00 0.00 10.00 0.00 1.00 ................................CCGGATGATGGTTCACAACGACG......................................................................... 23 1 11.00 0.00 9.00 2.00 0.00 .......................................................................TCGGTGGGACTTTCGTCCGTTG................................... 22 1 11.00 0.00 8.00 3.00 0.00 .......................................................................TCGGTGGGACTTTCCTCCGTTT................................... 22 1 10.00 0.00 9.00 1.00 0.00 ......................................................................GTCGGTGGGACTTTCGTCCGTT.................................... 22 1 10.00 0.00 10.00 0.00 0.00 .......................................................................TCGGTGGGACTTTCGTCCGTCT................................... 22 1 10.00 0.00 10.00 0.00 0.00 .......................................................................TCGGTGGGACTTTCGTCCT...................................... 19 1 9.00 0.00 7.00 2.00 0.00 .......................................................................TCGGTGGGACTTTCGTCTT...................................... 19 1 9.00 0.00 9.00 0.00 0.00 .......................................................................TCAGTGGGACTTTCGTCCGTT.................................... 21 1 9.00 0.00 5.00 4.00 0.00 ................................CCGGATGATGGTTCACAACGG........................................................................... 21 1 9.00 0.00 8.00 1.00 0.00 .......................................................................TCGGTGGCACTTTCGTCCGTT.................................... 21 1 9.00 0.00 7.00 2.00 0.00 .......................................................................TCGATGGGACTTTCGTCCGTT.................................... 21 1 9.00 0.00 7.00 2.00 0.00 .......................................................................TCGGTGGGACTTTCGTCCGTTTAC................................. 24 1 8.00 0.00 7.00 1.00 0.00 .......................................................................TCGGTGGGACTTTCGCCCGTTT................................... 22 1 8.00 0.00 6.00 1.00 1.00 .......................................................................TCGGTGGGACTTCCGTCCGTT.................................... 21 1 8.00 0.00 6.00 2.00 0.00 .......................................................................TCGGTGGGACTTTAGTCCGTT.................................... 21 1 8.00 0.00 7.00 1.00 0.00 .......................................................................TCGGTGGGACTTTCGTCCTTT.................................... 21 1 8.00 0.00 8.00 0.00 0.00

droSec1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	super_1:9037606-9037733 +	96.9	TGATACGAGACCATGGTAATGGTACGGTGCGACCGGATGATGGTTCACAACGACCGTGTCATTTAAACGGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAACGATTTATCAGTGTCCGT TGATACGAGACCATAGTAATGGTACGGTGCGACCGGATGATGGTTCACAACGACCGTGTCCTTTAAACGGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAACGATTTATCAGTGTCCGT Size Hit Count Total Norm V113 Male body V114 Embryo V115 Head .......................................................................TCGGTGGGACTTTCGTCCGTTT................................... 22 1 1021.00 255.00 147.00 619.00 .......................................................................TCGGTGGGACTTTCGTCCGTT.................................... 21 1 579.00 28.00 8.00 543.00 ................................CCGGATGATGGTTCACAACGACC......................................................................... 23 1 385.00 40.00 118.00 227.00 ................................CCGGATGATGGTTCACAACGAC.......................................................................... 22 1 41.00 7.00 4.00 30.00 .......................................................................TCGGTGGGACTTTCGTCCGTTTT.................................. 23 1 30.00 12.00 0.00 18.00 ................................CCGGATGATGGTTCACAACG............................................................................ 20 1 19.00 6.00 0.00 13.00 .......................................................................TCGGTGGGACTTTCGTCCGTTA................................... 22 1 18.00 2.00 0.00 16.00 ................................CCGGATGATGGTTCACAACGA........................................................................... 21 1 11.00 5.00 0.00 6.00 .......................................................................TCGGTGGGACTTTCGTCCGTTTA.................................. 23 1 11.00 2.00 0.00 9.00 .......................................................................TTGGTGGGACTTTCGTCCGTTT................................... 22 1 9.00 0.00 7.00 2.00 .........................................................................GGTGGGACTTTCGTCCGTTT................................... 20 1 6.00 2.00 1.00 3.00 .......................................................................TCGGTxGGACTTTCGTCCGTTT................................... 21 1 6.00 1.00 1.00 4.00 .......................................................................TCGGTGGGACTTTCGTCCGTTC................................... 22 1 6.00 3.00 1.00 2.00 .......................................................................TCGGTGGGACTTTCGTCCGT..................................... 20 1 6.00 1.00 0.00 5.00 .......................................................................TCGGTGGGACTTTCGTCCGTTTTT................................. 24 1 5.00 1.00 0.00 4.00 .......................................................................TCGGTGGGACTTTCGTTCGTTT................................... 22 1 5.00 1.00 3.00 1.00 ................................CCGGATGATGGTTCACAACGACA......................................................................... 23 1 5.00 0.00 0.00 5.00 .......................................................................TCGGTGGGACTTTCGTCCCTTT................................... 22 1 4.00 4.00 0.00 0.00 .......................................................................TCGGTGGGACTTTCGTCTGTT.................................... 21 1 4.00 2.00 0.00 2.00 .......................................................................TCGGTGGGACTTTCGTCCTTTT................................... 22 1 3.00 2.00 0.00 1.00 .......................................................................TCGGTGGGACTTTCGTCCGTTTAA................................. 24 1 3.00 2.00 0.00 1.00 .......................................................................TCGGTGGGACTTTCGTCCGTTTC.................................. 23 1 3.00 1.00 0.00 2.00 .......................................................................TCGGTAGGACTTTCGTCCGTTT................................... 22 1 3.00 0.00 0.00 3.00 .......................................................................TCGGTxGGACTTTCGTCCGTT.................................... 20 1 3.00 0.00 0.00 3.00 .......................................................................TCGGTGGGACTTTCGTCCGAT.................................... 21 1 3.00 0.00 0.00 3.00 ................................CCGGATGATGGTTCACAACGACCT........................................................................ 24 1 3.00 0.00 0.00 3.00 ........................................................................TCGTGGGACTTTCGTCCGTTT................................... 21 1 3.00 0.00 1.00 2.00 .......................................................................TCGGTGGGACTTTCGTCCATTT................................... 22 1 3.00 2.00 0.00 1.00

droYak2 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	chr2R:17445962-17446088 -	96.89	TGATACGAGACCATGGTAATGGTACGGTGCGACCGGATGATGGTTCACAACGACCGTGTCATTTAAACGGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAACGATTTATCAGTGTCCGT TGATACGACACCATGGTAATGGTACGGTGCGACCGGATGATGGTTCACAACGACCGTGTCCTTTAAACGGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAACGATTTATCAGTGTCCG- Size Hit Count Total Norm V046 Embryo V052 Head V120 Male body V058 Head M026 Head .......................................................................TCGGTGGGACTTTCGTCCGTT.................................... 21 1 5052.00 0.00 423.00 6.00 593.00 4030.00 .......................................................................TCGGTGGGACTTTCGTCCGTTT................................... 22 1 3233.00 7.00 565.00 151.00 726.00 1784.00 ................................CCGGATGATGGTTCACAACGACC......................................................................... 23 1 1064.00 42.00 16.00 23.00 29.00 954.00 .......................................................................TCGGTGGGACTTTCGTCCGT..................................... 20 1 261.00 0.00 11.00 2.00 15.00 233.00 .......................................................................TCGGTGGGACTTTCGTCCGTC.................................... 21 1 124.00 0.00 0.00 0.00 0.00 124.00 .......................................................................TCGGTGGGCCTTTCGTCCGTT.................................... 21 1 93.00 0.00 1.00 0.00 2.00 90.00 .......................................................................TCGGTGGGACTTTCGTCCGTTTT.................................. 23 1 91.00 0.00 22.00 8.00 36.00 25.00 .......................................................................TCGGTGGGACTTTCGTCCG...................................... 19 1 73.00 0.00 0.00 0.00 2.00 71.00 .......................................................................TCGGTGGGACTTTCTTCCGTT.................................... 21 1 64.00 0.00 3.00 0.00 3.00 58.00 ................................CCGGATGATGGTTCACAACG............................................................................ 20 1 61.00 0.00 1.00 2.00 5.00 53.00 .......................................................................TCGGTGGGCCTTTCGTCCGTTT................................... 22 1 50.00 0.00 3.00 2.00 6.00 39.00 .......................................................................TCGGTGGGACTTTCGTCCGG..................................... 20 1 43.00 0.00 1.00 0.00 0.00 42.00 .......................................................................TCGGTGGGACTTTCCTCCGTT.................................... 21 1 39.00 0.00 2.00 0.00 0.00 37.00 .......................................................................TCGGTGGGACTTTCGTCCGC..................................... 20 1 39.00 0.00 0.00 0.00 0.00 39.00 .......................................................................TCGGTGGGACTTTCxTCCGTT.................................... 20 1 34.00 0.00 0.00 0.00 0.00 34.00 ................................CCGGATGATTGTTCACAACGACC......................................................................... 23 1 34.00 0.00 0.00 0.00 0.00 34.00 ................................CCGGATGATGGTTCACAACGACA......................................................................... 23 1 33.00 0.00 0.00 1.00 0.00 32.00 ................................CCGGATGATGGTTCACAACGACCT........................................................................ 24 1 31.00 0.00 0.00 0.00 0.00 31.00 ................................CCGGATGATGGTTCACAACGAC.......................................................................... 22 1 30.00 1.00 3.00 2.00 1.00 23.00 .......................................................................TCGGTGGGACTTTCGTCCGTTC................................... 22 1 29.00 0.00 2.00 0.00 4.00 23.00 .......................................................................TCGGTGGGACTTTCGGCCGTT.................................... 21 1 29.00 0.00 4.00 0.00 2.00 23.00 .......................................................................TCGGTGGGACTTTCGTCCGTTTA.................................. 23 1 28.00 0.00 13.00 2.00 11.00 2.00 .......................................................................TCGGTGGGACTTTCGTCCGTTTC.................................. 23 1 28.00 0.00 1.00 0.00 2.00 25.00 ................................CCGGATGATGTTTCACAACGACC......................................................................... 23 1 26.00 0.00 0.00 0.00 0.00 26.00 ................................CCGGATGATGGTTCACAACGACT......................................................................... 23 1 26.00 0.00 0.00 0.00 0.00 26.00 ................................CCGGATGATxGTTCACAACGACC......................................................................... 22 1 20.00 0.00 0.00 0.00 0.00 20.00 .......................................................................TCGGTGGGACTTTCGTCCGTG.................................... 21 1 18.00 0.00 0.00 0.00 2.00 16.00 .......................................................................TCGGTGGGACTTTCGTCCGTTA................................... 22 1 18.00 0.00 6.00 1.00 9.00 2.00 ................................CCGGATGATGGTTCACAACGA........................................................................... 21 1 15.00 0.00 2.00 4.00 3.00 6.00 .......................................................................TCGGTGGGACTTTCGTCCGTGG................................... 22 1 14.00 0.00 0.00 0.00 0.00 14.00 .......................................................................TCGGTGGGACTTTCGTCCTTTT................................... 22 1 14.00 0.00 2.00 0.00 4.00 8.00 .......................................................................TCGGTGGGACTTTCGTCC....................................... 18 1 14.00 0.00 1.00 0.00 0.00 13.00 .......................................................................TCGGTGGGACTTTCGTCCGGT.................................... 21 1 14.00 0.00 1.00 0.00 2.00 11.00 .......................................................................TCGGTGGGACTTTCGTCCGGTT................................... 22 1 12.00 0.00 7.00 0.00 2.00 3.00 .......................................................................TCGGGGGGACTTTCGTCCGTT.................................... 21 1 12.00 0.00 1.00 0.00 10.00 1.00 .......................................................................TCGGTGGGACTTTCGCCCGTT.................................... 21 1 11.00 0.00 1.00 0.00 4.00 6.00 .......................................................................TCGGTGGGACTTTCGTCCGTTTTT................................. 24 1 10.00 0.00 3.00 0.00 5.00 2.00 .......................................................................TCGGTGGGACTTTCGTCCGCTT................................... 22 1 9.00 0.00 4.00 0.00 5.00 0.00 .......................................................................TCGGAGGGACTTTCGTCCGTT.................................... 21 1 9.00 0.00 1.00 0.00 4.00 4.00 .......................................................................TCGGTGGGACTTTCTTCCGTTT................................... 22 1 8.00 0.00 0.00 1.00 5.00 2.00 .........................................................................GGTGGGACTTTCGTCCGTTT................................... 20 1 8.00 0.00 4.00 0.00 4.00 0.00 .......................................................................TCGGTGGGACTTTCGTCCGTTTAA................................. 24 1 8.00 0.00 0.00 1.00 5.00 2.00 .......................................................................TCGGTGGGACTTTCGTCCGTTTAC................................. 24 1 8.00 0.00 0.00 0.00 0.00 8.00 .......................................................................TCGGTGGGACTTTCGTCCGCT.................................... 21 1 8.00 0.00 3.00 0.00 5.00 0.00 .......................................................................TCGGGGGGACTTTCGTCCGTTT................................... 22 1 8.00 0.00 0.00 0.00 8.00 0.00 .......................................................................TCGGTGGGTCTTTCGTCCGTTT................................... 22 1 8.00 0.00 0.00 0.00 8.00 0.00 ................................CCGGATGATCGTTCACAACGACC......................................................................... 23 1 7.00 0.00 0.00 0.00 0.00 7.00 .......................................................................TCGGTGGGTCTTTCGTCCGTT.................................... 21 1 7.00 0.00 2.00 0.00 4.00 1.00 .......................................................................TCGGTGGGACTTTCCTCCGTTT................................... 22 1 7.00 0.00 0.00 0.00 5.00 2.00 .......................................................................TCGGTGGGACTTTCGTCCGTTTG.................................. 23 1 7.00 0.00 1.00 1.00 3.00 2.00 .......................................................................TCGGTGGGACTTTCGTCCGTTTGT................................. 24 1 7.00 0.00 1.00 1.00 4.00 1.00 .......................................................................TCGGTGGGGCTTTCGTCCGTT.................................... 21 1 7.00 0.00 1.00 0.00 3.00 3.00 .......................................................................TCGGTGGGACTTTCGGCCGTTT................................... 22 1 7.00 0.00 0.00 0.00 4.00 3.00 .......................................................................TCGGTGGGACTTTCGTCCTTT.................................... 21 1 7.00 0.00 2.00 0.00 5.00 0.00 .......................................................................TCGGTTGGACTTTCGTCCGTT.................................... 21 1 7.00 0.00 0.00 0.00 0.00 7.00 .......................................................................TCTGTGGGACTTTCGTCCGTTT................................... 22 1 7.00 0.00 1.00 0.00 0.00 6.00 .......................................................................TCGGCGGGACTTTCGTCCGTT.................................... 21 1 7.00 0.00 0.00 0.00 6.00 1.00 .........................................................................GGTGGGACTTTCGTCCGTT.................................... 19 1 6.00 0.00 3.00 0.00 3.00 0.00 .......................................................................TCGGTGGGACTTTTGTCCGTT.................................... 21 1 6.00 0.00 0.00 0.00 3.00 3.00 .......................................................................TCGGTGGGACTTTCGTCCGTA.................................... 21 1 6.00 0.00 2.00 0.00 0.00 4.00 .......................................................................TCGGTGGGGCTTTCGTCCGTTT................................... 22 1 6.00 0.00 1.00 0.00 3.00 2.00 .......................................................................TCGGTGGGACTTTxTTCCGTT.................................... 20 1 5.00 0.00 0.00 0.00 0.00 5.00 .......................................................................TCGGGGGGGCTTTCGTCCGTT.................................... 21 1 5.00 0.00 1.00 0.00 3.00 1.00 .......................................................................TCGGTGGGAATTTCGTCCGTT.................................... 21 1 5.00 0.00 1.00 0.00 3.00 1.00 .......................................................................TCGGTGGGACTTTCGTCCGTTTTC................................. 24 1 5.00 0.00 1.00 0.00 0.00 4.00 .......................................................................TCGGCGGGACTTTCGTCCGTTT................................... 22 1 5.00 0.00 2.00 0.00 3.00 0.00 .......................................................................TCGGTGAGACTTTCGTCCGTT.................................... 21 1 5.00 0.00 1.00 0.00 0.00 4.00 .......................................................................TCGGAGGGACTTTCGTCCGTTT................................... 22 1 5.00 0.00 0.00 0.00 5.00 0.00 ................................CCGGATGATGGTTCACAACGACCC........................................................................ 24 1 5.00 0.00 0.00 0.00 0.00 5.00 .......................................................................TCAGTGGGACTTTCGTCCGTTT................................... 22 1 5.00 0.00 2.00 0.00 2.00 1.00 .......................................................................TCGGTGGGACTTTCATCCGTT.................................... 21 1 5.00 0.00 0.00 0.00 2.00 3.00 ................................CCGGACGATGGTTCACAACGACC......................................................................... 23 1 5.00 0.00 1.00 0.00 1.00 3.00 .......................................................................TCGGTGGGACTTTCGTCCGTTG................................... 22 1 5.00 0.00 1.00 0.00 1.00 3.00 .......................................................................TCGGTTGGACTTTCGTCCGTTT................................... 22 1 5.00 0.00 1.00 0.00 2.00 2.00 .......................................................................TCGGTGGGACTTTCGTCTGTT.................................... 21 1 5.00 0.00 0.00 0.00 0.00 5.00 ................................CCGGATGATAGTTCACAACGACC......................................................................... 23 1 4.00 0.00 0.00 0.00 1.00 3.00 ................................CCGGATTATGGTTCACAACGACC......................................................................... 23 1 4.00 0.00 0.00 0.00 0.00 4.00 .......................................................................TCGGTGGGACTTTCGCCCGTTT................................... 22 1 4.00 0.00 0.00 0.00 3.00 1.00 .......................................................................TCGGTGGGACTTTAGTCCGTTT................................... 22 1 4.00 0.00 2.00 0.00 2.00 0.00 .......................................................................TCGGTGGGACCTTCGTCCGTT.................................... 21 1 4.00 0.00 0.00 0.00 0.00 4.00 .......................................................................TCGGTGGGACTTTAGTCCGTT.................................... 21 1 4.00 0.00 2.00 0.00 2.00 0.00 .......................................................................TCGGTAGGACTTTCGTCCGTTT................................... 22 1 4.00 0.00 2.00 0.00 0.00 2.00 .......................................................................TCGGGGGGGCTTTCGTCCGTTT................................... 22 1 4.00 0.00 0.00 0.00 4.00 0.00 ................................CCGGATGATGGTTCACAACAACC......................................................................... 23 1 4.00 1.00 1.00 0.00 0.00 2.00 ................................CCGGATGATGCTTCACAACGACC......................................................................... 23 1 4.00 0.00 0.00 0.00 0.00 4.00 .......................................................................TCGGTGGGCCTTTCGTCCGT..................................... 20 1 3.00 0.00 0.00 0.00 0.00 3.00 ................................CCGGATGATGGTTCACAACGACCA........................................................................ 24 1 3.00 0.00 0.00 0.00 0.00 3.00 .......................................................................TCGGTGGAACTTTCGTCCGTT.................................... 21 1 3.00 0.00 1.00 0.00 1.00 1.00 .................................CGGATGATGGTTCACAACGACC......................................................................... 22 1 3.00 0.00 0.00 0.00 0.00 3.00 .......................................................................TCGGTCGGACTTTCGTCCGTT.................................... 21 1 3.00 0.00 0.00 0.00 1.00 2.00 .......................................................................TCGCTGGGACTTTCGTCCGTTT................................... 22 1 3.00 0.00 1.00 0.00 2.00 0.00 .......................................................................TTGGTGGGACTTTCGTCCGTT.................................... 21 1 3.00 0.00 0.00 0.00 0.00 3.00 .......................................................................TCGGTGGGACTTTCGTCAGTTT................................... 22 1 3.00 0.00 2.00 0.00 1.00 0.00 .......................................................................TCGGTGGGCCTTTCGTCCGG..................................... 20 1 3.00 0.00 0.00 0.00 0.00 3.00 .......................................................................TCGGTGGGACTTTCGACCGTT.................................... 21 1 3.00 0.00 0.00 0.00 0.00 3.00 .......................................................................CCGGTGGGACTTTCGTCCGTTT................................... 22 1 3.00 0.00 1.00 0.00 0.00 2.00 .......................................................................TCGGTGGGACTTTCGTACGTT.................................... 21 1 3.00 0.00 1.00 0.00 2.00 0.00 .......................................................................TCGGGGGGACTTTCGTCCGCT.................................... 21 1 3.00 0.00 1.00 0.00 2.00 0.00 .......................................................................TCTGTGGGACTTTCGTCCGTT.................................... 21 1 3.00 0.00 0.00 0.00 0.00 3.00 .......................................................................TCGGGGGGTCTTTCGTCCGTT.................................... 21 1 3.00 0.00 0.00 0.00 3.00 0.00 .......................................................................TCGGTGGGACCTTCGTCCGTTT................................... 22 1 3.00 0.00 0.00 0.00 2.00 1.00

droEre2 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	scaffold_4845:14318899-14319025 -	97.66	TGATACGAGACCATGGTAATGGTACGGTGCGACCGGATGATGGTTCACAACGACCGTGTCATTTAAACGGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAACGATTTATCAGTGTCCGT TGATACGAGACCATGGTAATGGTACGGTGCGACCGGATGATGGTTCACAACGACCGTGTCCTTTAAACGGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAACGATTTATCAGTGTCCG- Size Hit Count Total Norm V040 Embryo V060 Head V047 Embryo V108 Head .......................................................................TCGGTGGGACTTTCGTCCGTTT................................... 22 1 1254.00 3.00 520.00 0.00 731.00 .......................................................................TCGGTGGGACTTTCGTCCGTT.................................... 21 1 837.00 0.00 335.00 0.00 502.00 ................................CCGGATGATGGTTCACAACGACC......................................................................... 23 1 565.00 22.00 23.00 0.00 520.00 .......................................................................TCGGTGGGACTTTCGTCCGTTTT.................................. 23 1 34.00 0.00 17.00 0.00 17.00 ................................CCGGATGATGGTTCACAACGAC.......................................................................... 22 1 29.00 3.00 1.00 0.00 25.00 .......................................................................TCGGTGGGACTTTCGTCCGTTTA.................................. 23 1 26.00 0.00 8.00 0.00 18.00 ................................CCGGATGATGGTTCACAACG............................................................................ 20 1 16.00 0.00 3.00 0.00 13.00 .......................................................................TCGGTGGGACTTTCGTCCGT..................................... 20 1 13.00 0.00 7.00 0.00 6.00 ................................CCGGATGATGGTTCACAACGA........................................................................... 21 1 13.00 0.00 0.00 0.00 13.00 .......................................................................TCGGTGGGACTTTCGTCAGTTT................................... 22 1 12.00 0.00 1.00 0.00 11.00 ................................CCTGATGATGGTTCACAACGACC......................................................................... 23 1 11.00 0.00 0.00 0.00 11.00 .......................................................................TCGGTGGGACTTTCGTCCGTTA................................... 22 1 11.00 0.00 2.00 0.00 9.00 ................................CAGGATGATGGTTCACAACGACC......................................................................... 23 1 10.00 0.00 0.00 0.00 10.00 .......................................................................TCGGTGTGACTTTCGTCCGTT.................................... 21 1 10.00 0.00 0.00 0.00 10.00 .......................................................................TCGGTGGGACTTTCGTCCGTTTAA................................. 24 1 9.00 0.00 1.00 0.00 8.00 ................................CCGGATGATGGTTCACAACTACC......................................................................... 23 1 9.00 1.00 0.00 0.00 8.00 .......................................................................TCGGTGGGACTTTCGTCCGTTTC.................................. 23 1 9.00 0.00 3.00 0.00 6.00 ................................CCGGATGATTGTTCACAACGACC......................................................................... 23 1 9.00 0.00 0.00 0.00 9.00 .......................................................................TCGGTTGGACTTTCGTCCGTTT................................... 22 1 9.00 0.00 0.00 0.00 9.00 .........................................................................GGTGGGACTTTCGTCCGTTT................................... 20 1 8.00 0.00 4.00 0.00 4.00 .......................................................................TCGGTGGGACTTTCGTACGTT.................................... 21 1 8.00 0.00 0.00 0.00 8.00 .......................................................................TCTGTGGGACTTTCGTCCGTTT................................... 22 1 7.00 0.00 1.00 0.00 6.00 .........................................................................GGTGGGACTTTCGTCCGTT.................................... 19 1 6.00 0.00 4.00 0.00 2.00 .......................................................................TCGGTAGGACTTTCGTCCGTTT................................... 22 1 6.00 0.00 4.00 0.00 2.00 .......................................................................TCGGTTGGACTTTCGTCCGTT.................................... 21 1 6.00 0.00 0.00 0.00 6.00 .......................................................................TCGGTGGGACTTTCGTACGTTT................................... 22 1 6.00 0.00 1.00 0.00 5.00 ................................ACGGATGATGGTTCACAACGACC......................................................................... 23 1 5.00 0.00 0.00 0.00 5.00 .......................................................................TCGGTGGGTCTTTCGTCCGTT.................................... 21 1 5.00 0.00 5.00 0.00 0.00 .......................................................................TCGGTGGGACTTTCGCCCGTT.................................... 21 1 5.00 0.00 2.00 0.00 3.00 .......................................................................TCGGTGAGACTTTCGTCCGTTT................................... 22 1 5.00 0.00 5.00 0.00 0.00 .......................................................................TCGGCGGGACTTTCGTCCGTTT................................... 22 1 5.00 0.00 2.00 0.00 3.00 .......................................................................TCGGTGGGACTTTCGTCCGCTT................................... 22 1 5.00 0.00 5.00 0.00 0.00 .......................................................................TCGGTGAGACTTTCGTCCGTT.................................... 21 1 5.00 0.00 4.00 0.00 1.00 .......................................................................TAGGTGGGACTTTCGTCCGTT.................................... 21 1 5.00 0.00 0.00 0.00 5.00 .......................................................................TCGGTGGGACTTTCGTCCTTTT................................... 22 1 5.00 0.00 3.00 0.00 2.00 ................................CCGGATGATGGTTCACAACGACT......................................................................... 23 1 5.00 0.00 0.00 0.00 5.00 ................................CCGGATGATGGTTCACAACGACG......................................................................... 23 1 5.00 0.00 0.00 0.00 5.00 ................................CCGGATTATGGTTCACAACGACC......................................................................... 23 1 4.00 0.00 0.00 0.00 4.00 .......................................................................TAGGTGGGACTTTCGTCCGTTT................................... 22 1 4.00 0.00 1.00 0.00 3.00 .......................................................................TCGGAGGGACTTTCGTCCGTTT................................... 22 1 4.00 0.00 4.00 0.00 0.00 .......................................................................TCGGTGGTACTTTCGTCCGTT.................................... 21 1 4.00 0.00 0.00 0.00 4.00 .......................................................................TCGGTGGGACTTTCGTCCGTTC................................... 22 1 4.00 0.00 1.00 0.00 3.00 .......................................................................TCTGTGGGACTTTCGTCCGTT.................................... 21 1 4.00 0.00 0.00 0.00 4.00 .......................................................................TCGGTGGGACTTTCGTCCTTT.................................... 21 1 4.00 0.00 2.00 0.00 2.00 .......................................................................TCGGTGGGACTTTCGTCGTTT.................................... 21 1 4.00 0.00 0.00 0.00 4.00 .......................................................................TCGGTGTGACTTTCGTCCGTTT................................... 22 1 4.00 0.00 1.00 0.00 3.00 ........................................................................TCGTGGGACTTTCGTCCGTTT................................... 21 1 4.00 0.00 0.00 0.00 4.00 .......................................................................TCGGTGGGACTTTCGTCCATTT................................... 22 1 4.00 0.00 3.00 0.00 1.00 .......................................................................TCGGTGGGACTTTCTTCCGTTT................................... 22 1 3.00 0.00 3.00 0.00 0.00 ................................CCGGATGATGGTTCACAAC............................................................................. 19 1 3.00 0.00 0.00 0.00 3.00 ................................CCGGATGATGGTTCACAACGT........................................................................... 21 1 3.00 0.00 0.00 0.00 3.00 .......................................................................TCGGTGGGACTTTCGTCT....................................... 18 1 3.00 0.00 0.00 0.00 3.00 .......................................................................TCGGTGGGACTTTCGTCCGCT.................................... 21 1 3.00 0.00 3.00 0.00 0.00 .......................................................................TCGGTGGGCCTTTCGTCCGTT.................................... 21 1 3.00 0.00 3.00 0.00 0.00 ................................CCGGATGATGGTTAACAACGACC......................................................................... 23 1 3.00 0.00 0.00 0.00 3.00 .......................................................................TCGGTGGGACTTTCGTCTGTTT................................... 22 1 3.00 0.00 1.00 0.00 2.00 .......................................................................TCGGGGGGACTTTCGTCCGTT.................................... 21 1 3.00 0.00 2.00 0.00 1.00 .......................................................................CCGGTGGGACTTTCGTCCGTTT................................... 22 1 3.00 0.00 2.00 0.00 1.00 ................................CCGGATGATGGTTCACAGCGACC......................................................................... 23 1 3.00 0.00 0.00 0.00 3.00 .......................................................................TCGGTGGGACTTTCGTTCGTTT................................... 22 1 3.00 0.00 0.00 0.00 3.00 .......................................................................TCGGTGGGACTTTCGTCCGTTTAAA................................ 25 1 3.00 0.00 1.00 0.00 2.00 ................................CCGGATGATGCTTCACAACGACC......................................................................... 23 1 3.00 1.00 0.00 0.00 2.00 ................................CCGGATGATGGTTCACAACGACA......................................................................... 23 1 3.00 0.00 0.00 0.00 3.00 .......................................................................TCGGTGGGGCTTTCGTCCGTTT................................... 22 1 3.00 0.00 2.00 0.00 1.00

droFic1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	scf7180000453809:33529-33658 +	88.72	TGATACGAGACCAT--GGTAATGGTACGGTGCGACCGGATGATGGTTCACAACGACCGTGTCATTTAAACGGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAACGATTTATCAGTGTCCGT CGAGATACGGCCATGTGGTAATGGTACGGTGCGACCGGATGATGGTTCACAACGACCGTGTCCTTTAAACGGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAGCGATTTATCAGTGTCCAT Size Hit Count Total Norm

droEug1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	scf7180000409672:431496-431624 +	92.37	TGATACGAGAC-CATGGTAATGGTACGGTGCGACCGGATGATGGTTCACAACGACCGTGTCATTTAAACGGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAACGATTTATCAGTGTCCGT CGATACCGGTCACATGGTAATGGTACGGTGCGACCGGATGATGGTTCACAACGACCGTGTCCTTTAAACTGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAACGATTTATCAGTGTCCGT Size Hit Count Total Norm

droBia1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	scf7180000302292:4120087-4120198 -	75.02	TGATACGAGACCATGGTAATGGTACGGTGCGACCGGATGATGGTTCACAACGACCGTGTCATTTAAACGGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAACGATTTATCAGTGTCCGT ---------------GTAATGGTACGGTGCGACCGGATGATGGTTCACAACGACCGTGTCCTTTAAACGGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAGCGATTTATCAGTGTCC-- Size Hit Count Total Norm

droTak1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	scf7180000415241:147514-147629 -	75.82	TGATACGAGACCATGGTAATGGTACGGTGCGACCGGATGATGGTTCACAACGACCGTGTCATTTAAACGGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAACGATTTATCAGTGTCCGT-- ---------------GTAATGGTTCGGTGCGACCGGATGATGGTTCACAACGACCGTGTTCTTTAAACGGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAACGATTTATCAGTGTCCAGTG Size Hit Count Total Norm

droEle1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	scf7180000491107:511708-511821 +	74.97	TGATACGAGACCATGGTAATGGTACGGTGCGACCGGATGATGGTTCACAACGACCGTGTCATTTAAACGGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAACGATTTATCAGTGTCCGT ---------------GTAATGGTTTGGTGCGACCGGATGATGGTTCACAACGACCGTGTCCTTTAAACAGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAGCGATTTATCAGTGTCCGC Size Hit Count Total Norm

droRho1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	scf7180000779911:581681-581805 -	91.46	TGATACGAGACCATGGTAATGGTACGGTGCGACCGGATGATGGTTCACAACGACCGTGTCATTTAAACGGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAACGATTTATCAGTGTCCGT --ATA-GTGGCAATGGTAATGGTACGGTGCGACCGGATGATGGTTCACAACGACCGTGTCCTTTAAACGGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAGCGATTTATCAGTGTCCGT Size Hit Count Total Norm

droKik1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	scf7180000302682:1699625-1699738 +	75.67	TGATACGAGACCATGGTAATGGTACGGTGCGACCGGATGATGGTTCACAACGACCGTGTCATTTAAACGGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAACGATTTATCAGTGTCCGT ------------ATTGTAATGGTATGGTGCGACCGGATGATGGTTCACAACGACCGTGTCCTTTCAACGGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAGCGATTTATCAGTGTC--- Size Hit Count Total Norm

droAna3 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	scaffold_13266:12641317-12641435 -	80.43	TGATACGAGACCAT-----GGTAATGGTACGGTGCGACCGGATGATGGTTCACAACGACCGTGTCATTTAAACGGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAACGATTTATCAGTGTCCGT T-----------ATGTAACGGTAATGGTACGGTGCGACCGGATGATGGTTCACAACGACCGTGTCCTTCGAACGGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAGCGATTTATCA---TCCGG Size Hit Count Total Norm V105 Male body V106 Head V055 Unknown V039 Embryo ............................................................................TCGGTGGGACTTTCGTCCGTTT................................... 22 1 1352.00 426.00 300.00 626.00 0.00 .....................................CCGGATGATGGTTCACAACGACC......................................................................... 23 1 695.00 50.00 615.00 26.00 4.00 ............................................................................TCGGTGGGACTTTCGTCCGTT.................................... 21 1 617.00 33.00 110.00 474.00 0.00 ............................................................................TCGGTGGGACTTTCGTCCGTTTT.................................. 23 1 111.00 31.00 30.00 50.00 0.00 .....................................CCGGATGATGGTTCACAACGAC.......................................................................... 22 1 40.00 6.00 27.00 7.00 0.00 ............................................................................TCGGTGGGACTTTCGTCCGTTTA.................................. 23 1 25.00 4.00 14.00 7.00 0.00 ............................................................................TCGGTGGGACTTTCGTCCGT..................................... 20 1 20.00 3.00 4.00 13.00 0.00 ............................................................................TCGGTGGGACTTTCGTCCGTTA................................... 22 1 20.00 1.00 11.00 8.00 0.00 ............................................................................TCGGTGGGACTTTCGTCCGTTTTT................................. 24 1 19.00 6.00 5.00 8.00 0.00 ............................................................................TCGGGGGGACTTTCGTCCGTT.................................... 21 1 14.00 0.00 0.00 14.00 0.00 .....................................CCGGATGATGGTTCACAACGA........................................................................... 21 1 14.00 2.00 11.00 1.00 0.00 ............................................................................TCGGAGGGACTTTCGTCCGTTT................................... 22 1 13.00 0.00 1.00 12.00 0.00 ............................................................................TCTGTGGGACTTTCGTCCGTTT................................... 22 1 13.00 2.00 11.00 0.00 0.00 ............................................................................TCGGTGGGACTTTCGTCCGTTTC.................................. 23 1 12.00 0.00 7.00 5.00 0.00 ............................................................................TCGGTGGGACTTTCGTCCGTTTAA................................. 24 1 12.00 2.00 8.00 2.00 0.00 .....................................CCGGATGATGGTTCACAACG............................................................................ 20 1 11.00 1.00 8.00 2.00 0.00 ............................................................................TCGGGGGGACTTTCGTCCGTTT................................... 22 1 10.00 0.00 0.00 10.00 0.00 ............................................................................TCGGTGGGACTTTCGTCCGTTG................................... 22 1 10.00 1.00 2.00 7.00 0.00 ............................................................................TCGGTGGGACTTTCGTCCGTTTG.................................. 23 1 10.00 6.00 2.00 2.00 0.00 ............................................................................TCGGTGGGACTTTCGTCCGTCT................................... 22 1 8.00 5.00 3.00 0.00 0.00 .....................................CCTGATGATGGTTCACAACGACC......................................................................... 23 1 7.00 0.00 7.00 0.00 0.00 ............................................................................TCGGTGGGCCTTTCGTCCGTTT................................... 22 1 6.00 0.00 0.00 6.00 0.00 ............................................................................TCGGCGGGACTTTCGTCCGTTT................................... 22 1 6.00 0.00 0.00 6.00 0.00 ............................................................................TCGGTGGGGCTTTCGTCCGTTT................................... 22 1 6.00 0.00 0.00 6.00 0.00 ............................................................................TCGGCGGGACTTTCGTCCGTT.................................... 21 1 6.00 0.00 0.00 6.00 0.00 .....................................CCGGATGATGTTTCACAACGACC......................................................................... 23 1 5.00 1.00 4.00 0.00 0.00 ............................................................................TCGGTGGGGCTTTCGTCCGTT.................................... 21 1 5.00 0.00 0.00 5.00 0.00 ............................................................................TCGGTGGTACTTTCGTCCGTTT................................... 22 1 5.00 0.00 4.00 1.00 0.00 ............................................................................TCGGTGGGACTTTCGTCCGTTC................................... 22 1 5.00 0.00 3.00 2.00 0.00 .....................................CCGGATGATGGTTCACAACGACCT........................................................................ 24 1 5.00 0.00 5.00 0.00 0.00 .....................................CCGGATGATGGTTAACAACGACC......................................................................... 23 1 5.00 0.00 5.00 0.00 0.00 ..............................................................................GGTGGGACTTTCGTCCGTTT................................... 20 1 5.00 1.00 0.00 4.00 0.00 ............................................................................TCGGTGGGACTTTCGTCAGTTT................................... 22 1 5.00 1.00 2.00 2.00 0.00 ............................................................................TCGGTGGGACTTTCGTCCTTTT................................... 22 1 4.00 0.00 2.00 2.00 0.00 ............................................................................TAGGTGGGACTTTCGTCCGTTT................................... 22 1 4.00 2.00 2.00 0.00 0.00 ............................................................................TCGATGGGACTTTCGTCCGTTT................................... 22 1 4.00 1.00 0.00 3.00 0.00 ............................................................................TCGGTGCGACTTTCGTCCGTT.................................... 21 1 4.00 0.00 0.00 4.00 0.00 ............................................................................TCGGAGGGACTTTCGTCCGTT.................................... 21 1 4.00 0.00 0.00 4.00 0.00 ..............................................................................GGTGGGACTTTCGTCCGTT.................................... 19 1 4.00 0.00 0.00 4.00 0.00 .....................................CCGGATGATGGTTCACAACTACC......................................................................... 23 1 4.00 0.00 4.00 0.00 0.00 ............................................................................TCGGTGGGACTTTCGTACGTTT................................... 22 1 4.00 1.00 1.00 2.00 0.00 ............................................................................TCGGTGGGACTTTCGTCCGGTT................................... 22 1 4.00 1.00 0.00 3.00 0.00 ............................................................................TCGGTGGGACTTTCATCCGTT.................................... 21 1 4.00 0.00 1.00 3.00 0.00 ............................................................................TCGGTGGGACTGTCGTCCGTTT................................... 22 1 4.00 4.00 0.00 0.00 0.00 ............................................................................TCGGTGGGACTTTCTTCCGTTT................................... 22 1 3.00 2.00 0.00 1.00 0.00 ...........................................................................CTCGGTGGGACTTTCGTCCGTT.................................... 22 1 3.00 1.00 0.00 2.00 0.00 ............................................................................TCGGTGGCACTTTCGTCCGTTT................................... 22 1 3.00 0.00 0.00 3.00 0.00 ............................................................................TCGGTxGGACTTTCGTCCGTT.................................... 20 1 3.00 0.00 3.00 0.00 0.00 ............................................................................TCGGTGGGACTTTCGTTCGT..................................... 20 1 3.00 0.00 3.00 0.00 0.00 .....................................CCGGATGATGGTTCACAACGGCC......................................................................... 23 1 3.00 1.00 1.00 1.00 0.00 ............................................................................TCGGTAGGACTTTCGTCCGTTT................................... 22 1 3.00 0.00 2.00 1.00 0.00 ............................................................................TCGGTGGGACTTTCGTCCGTTTTG................................. 24 1 3.00 1.00 1.00 1.00 0.00 .....................................CCGGATGATxGTTCACAACGACC......................................................................... 22 1 3.00 1.00 2.00 0.00 0.00 ............................................................................TCGGTTGGACTTTCGTCCGTTT................................... 22 1 3.00 0.00 3.00 0.00 0.00 ............................................................................TCGGTGGGACTTTCCTCCGTTT................................... 22 1 3.00 0.00 1.00 2.00 0.00 ............................................................................TCGGTGGGACTTTCGTCCTTTTT.................................. 23 1 3.00 1.00 1.00 1.00 0.00 ............................................................................TCGGGGGGGCTTTCGTCCGTTT................................... 22 1 3.00 0.00 0.00 3.00 0.00 ............................................................................TCGGTGGGACTTTAGTCCGTT.................................... 21 1 3.00 0.00 0.00 3.00 0.00 ............................................................................TCGGTGGGACTTTTGTCCGTTT................................... 22 1 3.00 0.00 3.00 0.00 0.00 .....................................CCAGATGATGGTTCACAACGACC......................................................................... 23 1 3.00 0.00 3.00 0.00 0.00 ............................................................................TCGGTCGGACTTTCGTCCGTTT................................... 22 1 3.00 1.00 0.00 2.00 0.00 ...........................................................................CTCGGTGGGACTTTCGTCCGTTT................................... 23 1 3.00 0.00 0.00 3.00 0.00 ............................................................................TCGGTTGGACTTTCGTCCGTT.................................... 21 1 3.00 0.00 1.00 2.00 0.00 ............................................................................ACGGTGGGACTTTCGTCCGTTT................................... 22 1 3.00 0.00 1.00 2.00 0.00 ............................................................................TCGGTGGGACTTTCGTTCGTTT................................... 22 1 3.00 1.00 1.00 1.00 0.00 ............................................................................TCGGTCGGACTTTCGTCCGTT.................................... 21 1 3.00 0.00 1.00 2.00 0.00 ............................................................................TCGGTGGGACTTTCGTCCGCTT................................... 22 1 3.00 0.00 0.00 3.00 0.00 ............................................................................TCGGTGGGACTTTCGCCCGTTT................................... 22 1 3.00 1.00 1.00 1.00 0.00 ............................................................................TCGGTGGGTCTTTCGTCCGTTT................................... 22 1 3.00 0.00 0.00 3.00 0.00

droBip1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	scf7180000396372:139128-139246 -	81.16	TGATACGAGACCAT-----GGTAATGGTACGGTGCGACCGGATGATGGTTCACAACGACCGTGTCATTTAAACGGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAACGATTTATCAGTGTCCGT T-----------ATGTAACGGTAATGGTACGGTGCGACCGGATGATGGTTCACAACGACCGTGTCCTTTGAACGGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAGCGATTTATCA---TCCGG Size Hit Count Total Norm

dp4 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
2	chr3:19640883-19641018 -	71.42	TGATACGAGACCATGGTAATGGTACGGTGCGACCGGATGATGGTTCACAACGACCGTGTCATTTAAACGGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAACGATTTATC----------------AGTGTCCGT TG--------CAACGGTAATGGTACGGTGCGACCGGACGATGGTTCACAACGACCGTGTCTCTTAAACTGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAGCGATTTATCATCATCGTCGCGCCCCAGTGCTCGT Size Hit Count Total Norm V112 Male body V043 Embryo V051 Head M022 Male body .......................................................................TCGGTGGGACTTTCGTCCGTTT................................................... 22 1 1230.00 173.00 13.00 996.00 48.00 .......................................................................TCGGTGGGACTTTCGTCCGTT.................................................... 21 1 723.00 27.00 0.00 534.00 162.00 ................................CCGGACGATGGTTCACAACGACC......................................................................................... 23 1 266.00 13.00 58.00 45.00 150.00 .......................................................................TCGGTGGGACTTTCGTCCGTTTT.................................................. 23 1 56.00 13.00 0.00 43.00 0.00 .......................................................................TCGGTGGGACTTTCGTCCGT..................................................... 20 1 29.00 2.00 0.00 17.00 10.00 .......................................................................TCGGTGGGACTTTCGTCCGTTTC.................................................. 23 1 12.00 0.00 0.00 9.00 3.00 .......................................................................TCGGTGGGACTTTCGTCCG...................................................... 19 1 12.00 2.00 0.00 0.00 10.00 .......................................................................TCGGGGGGACTTTCGTCCGTTT................................................... 22 1 10.00 0.00 0.00 10.00 0.00 .......................................................................TCGGAGGGACTTTCGTCCGTTT................................................... 22 1 10.00 0.00 0.00 10.00 0.00 .......................................................................TCGGTGGGACTTTCGTCCGTTTA.................................................. 23 1 10.00 2.00 0.00 8.00 0.00 ................................CCGGACGATGGTTCACAACGAC.......................................................................................... 22 1 9.00 2.00 0.00 1.00 6.00 .........................................................................GGTGGGACTTTCGTCCGTTT................................................... 20 1 8.00 0.00 0.00 8.00 0.00 .......................................................................TCAGTGGGACTTTCGTCCGTTT................................................... 22 1 8.00 1.00 0.00 7.00 0.00 .......................................................................TCGGTGGGACTTTCGTCCGTTC................................................... 22 1 8.00 1.00 0.00 5.00 2.00 .......................................................................CCGGTGGGACTTTCGTCCGTT.................................................... 21 1 5.00 0.00 0.00 5.00 0.00 .........................................................................GGTGGGACTTTCGTCCGTT.................................................... 19 1 5.00 0.00 0.00 5.00 0.00 .......................................................................TCGTTGGGACTTTCGTCCGTTT................................................... 22 1 5.00 2.00 0.00 3.00 0.00 .......................................................................TCGGTGGGACTTTCCTCCGTT.................................................... 21 1 4.00 1.00 0.00 3.00 0.00 .......................................................................TCGGTGAGACTTTCGTCCGTTT................................................... 22 1 4.00 1.00 0.00 3.00 0.00 .......................................................................TCGGTGGGACTTTCTTCCGTT.................................................... 21 1 4.00 0.00 0.00 0.00 4.00 .......................................................................TCGGTGGGACTTTCxTCCGTT.................................................... 20 1 4.00 0.00 0.00 0.00 4.00 .......................................................................TCAGTGGGACTTTCGTCCGTT.................................................... 21 1 4.00 0.00 0.00 4.00 0.00 .......................................................................TCGGTGGGACTTTCGTCCGTTTCC................................................. 24 1 4.00 0.00 0.00 4.00 0.00 .......................................................................TCGGTGGGACTTTCGTCCGTTTTT................................................. 24 1 3.00 1.00 0.00 2.00 0.00 .......................................................................TCGGTGGGAATTTCGTCCGTTT................................................... 22 1 3.00 0.00 0.00 3.00 0.00 .......................................................................TCGGTGGGACTTTCGGCCGTTT................................................... 22 1 3.00 0.00 0.00 2.00 1.00 ................................CCGGACGATGGTTCACAACG............................................................................................ 20 1 3.00 1.00 0.00 1.00 1.00 ................................CCGGATGATGGTTCACAACGACC......................................................................................... 23 1 3.00 1.00 2.00 0.00 0.00 ................................CCGGACGATGGTTCACAACGA........................................................................................... 21 1 3.00 1.00 0.00 2.00 0.00 .......................................................................TCCGTGGGACTTTCGTCCGTTT................................................... 22 1 3.00 0.00 0.00 3.00 0.00 .......................................................................TCGGTGGGACTTTCATCCGTT.................................................... 21 1 3.00 0.00 0.00 2.00 1.00 .......................................................................TCGGCGGGACTTTCGTCCGTTT................................................... 22 1 3.00 0.00 0.00 3.00 0.00 .......................................................................TCGGTGGGGCTTTCGTCCGTTT................................................... 22 1 3.00 0.00 0.00 3.00 0.00 .......................................................................TCGGTGGGACTTTCGTCCGC..................................................... 20 1 3.00 0.00 0.00 0.00 3.00 .......................................................................TCGGTAGGACTTTCGTCCGTT.................................................... 21 1 3.00 0.00 0.00 3.00 0.00 .......................................................................TCGGTGGGACTTTAGTCCGTT.................................................... 21 1 3.00 0.00 0.00 3.00 0.00

droPer1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
2	super_37:642280-642415 -	71.42	TGATACGAGACCATGGTAATGGTACGGTGCGACCGGATGATGGTTCACAACGACCGTGTCATTTAAACGGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAACGATTTATC----------------AGTGTCCGT TG--------CAACGGTAATGGTACGGTGCGACCGGACGATGGTTCACAACGACCGTGTCTCTTAAACTGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAGCGATTTATCATCATCGTCGCGCCCCAGTGCTCGT Size Hit Count Total Norm V111 Male body V042 Embryo V050 Head V057 Head M021 Embryo .......................................................................TCGGTGGGACTTTCGTCCGTTT................................................... 22 1 1671.00 82.00 4.00 682.00 874.00 29.00 .......................................................................TCGGTGGGACTTTCGTCCGTT.................................................... 21 1 1335.00 41.00 0.00 412.00 834.00 48.00 ................................CCGGACGATGGTTCACAACGACC......................................................................................... 23 1 1032.00 0.00 10.00 32.00 45.00 945.00 .......................................................................TCGGTGGGACTTTCGTCCGT..................................................... 20 1 98.00 2.00 0.00 22.00 73.00 1.00 .......................................................................TCGGTGGGACTTTCGTCCGTTTT.................................................. 23 1 61.00 6.00 0.00 21.00 34.00 0.00 .......................................................................TCGGGGGGACTTTCGTCCGTT.................................................... 21 1 21.00 0.00 0.00 0.00 21.00 0.00 .......................................................................TCGGAGGGACTTTCGTCCGTTT................................................... 22 1 19.00 0.00 0.00 4.00 15.00 0.00 .......................................................................TCGGTGGGACTTTCGTCCGTTTA.................................................. 23 1 19.00 2.00 0.00 5.00 12.00 0.00 .......................................................................TCGGAGGGACTTTCGTCCGTT.................................................... 21 1 13.00 0.00 0.00 3.00 10.00 0.00 .......................................................................TCGGGGGGACTTTCGTCCGTTT................................................... 22 1 13.00 0.00 0.00 2.00 11.00 0.00 .......................................................................TCGGTGGGGCTTTCGTCCGTT.................................................... 21 1 11.00 0.00 0.00 1.00 10.00 0.00 ................................CCGGACGATGGTTCACAACGAC.......................................................................................... 22 1 11.00 0.00 0.00 1.00 1.00 9.00 .........................................................................GGTGGGACTTTCGTCCGTTT................................................... 20 1 10.00 0.00 0.00 1.00 9.00 0.00 .......................................................................TCGGTGGGGCTTTCGTCCGTTT................................................... 22 1 10.00 0.00 0.00 5.00 5.00 0.00 .......................................................................TCGGTGAGACTTTCGTCCGTTT................................................... 22 1 9.00 0.00 0.00 7.00 2.00 0.00 .......................................................................TCGGCGGGACTTTCGTCCGTTT................................................... 22 1 9.00 0.00 0.00 4.00 5.00 0.00 .......................................................................TCGGTAGGACTTTCGTCCGTTT................................................... 22 1 8.00 0.00 0.00 7.00 1.00 0.00 .......................................................................TCGGTGGGACTTTCGTCCGCTT................................................... 22 1 8.00 0.00 0.00 4.00 3.00 1.00 .......................................................................TCGGTCGGACTTTCGTCCGTTT................................................... 22 1 8.00 0.00 0.00 5.00 3.00 0.00 .......................................................................TCGGTGGGACTTTAGTCCGTTT................................................... 22 1 8.00 0.00 0.00 3.00 5.00 0.00 .......................................................................TCGGTGGGACTTTCGTCCGTTA................................................... 22 1 8.00 0.00 0.00 2.00 6.00 0.00 .......................................................................TCGGTGGGCCTTTCGTCCGTT.................................................... 21 1 7.00 0.00 0.00 2.00 5.00 0.00 .......................................................................TCGGTGGGACTTTCCTCCGTTT................................................... 22 1 6.00 0.00 0.00 2.00 4.00 0.00 .......................................................................TCGGTGGGACTTTCGCCCGTT.................................................... 21 1 6.00 0.00 0.00 2.00 4.00 0.00 ................................CCGGATGATGGTTCACAACGACC......................................................................................... 23 1 6.00 2.00 0.00 0.00 0.00 4.00 .......................................................................TCGGCGGGACTTTCGTCCGTT.................................................... 21 1 6.00 0.00 0.00 0.00 6.00 0.00 .......................................................................TCGGTGGGACTTTCGTCCGTTC................................................... 22 1 6.00 1.00 0.00 2.00 3.00 0.00 .......................................................................TCGGTGGGACTTTCGTCCGTTTC.................................................. 23 1 5.00 1.00 0.00 0.00 4.00 0.00 .......................................................................TCGGTGGGACTTTCGTCTGTTT................................................... 22 1 5.00 0.00 0.00 4.00 1.00 0.00 ................................CCGGACTATGGTTCACAACGACC......................................................................................... 23 1 5.00 0.00 0.00 0.00 0.00 5.00 .......................................................................TCAGTGGGACTTTCGTCCGTTT................................................... 22 1 5.00 1.00 0.00 2.00 2.00 0.00 .......................................................................TCGGTGGGACTTTTGTCCGTT.................................................... 21 1 5.00 0.00 0.00 2.00 3.00 0.00 .......................................................................TCGGTGGGAGTTTCGTCCGTTT................................................... 22 1 5.00 0.00 0.00 0.00 5.00 0.00 .......................................................................TCGGTGGGACTTTCGTCCGTTTAA................................................. 24 1 5.00 1.00 0.00 1.00 3.00 0.00 .......................................................................TCGGTGGGACTTTCGTCAGTTT................................................... 22 1 5.00 1.00 0.00 3.00 1.00 0.00 .......................................................................TCGGTGGGTCTTTCGTCCGTT.................................................... 21 1 5.00 0.00 0.00 0.00 5.00 0.00 .......................................................................TCGGTGGGACTTTCGTCCGCT.................................................... 21 1 5.00 0.00 0.00 2.00 3.00 0.00 .........................................................................GGTGGGACTTTCGTCCGTT.................................................... 19 1 5.00 0.00 0.00 2.00 3.00 0.00 .......................................................................TCGGTGGGACTTTCATCCGTTT................................................... 22 1 5.00 0.00 0.00 0.00 5.00 0.00 ................................CCGGACGATTGTTCACAACGACC......................................................................................... 23 1 5.00 0.00 0.00 0.00 0.00 5.00 ................................CCGGACGATGGTTCACAACGACA......................................................................................... 23 1 5.00 0.00 0.00 1.00 0.00 4.00 .......................................................................TCGGTGGGACTTTCCTCCGTT.................................................... 21 1 4.00 0.00 0.00 1.00 3.00 0.00 .......................................................................TCGGTGGGACTTTCTTCCGTT.................................................... 21 1 4.00 0.00 0.00 1.00 3.00 0.00 .......................................................................TCGGTGGGACTTTAGTCCGTT.................................................... 21 1 4.00 0.00 0.00 0.00 4.00 0.00 .......................................................................TCGGTGGGACTTTCGTTCGTTT................................................... 22 1 4.00 1.00 0.00 0.00 3.00 0.00 .......................................................................TCGGTGGGACTTTCGTCGTTT.................................................... 21 1 4.00 3.00 0.00 1.00 0.00 0.00 .......................................................................TAGGTGGGACTTTCGTCCGTTT................................................... 22 1 4.00 0.00 0.00 0.00 4.00 0.00 .......................................................................TCGGTCGGACTTTCGTCCGTT.................................................... 21 1 4.00 0.00 0.00 4.00 0.00 0.00 ................................CCGGACGATCGTTCACAACGACC......................................................................................... 23 1 4.00 0.00 0.00 0.00 0.00 4.00 .......................................................................TCGGTGGGACTTTCGTCCTTT.................................................... 21 1 4.00 0.00 0.00 2.00 2.00 0.00 .......................................................................TCGGTGCGACTTTCGTCCGTT.................................................... 21 1 4.00 0.00 0.00 2.00 2.00 0.00 .......................................................................TCGGTGGGATTTTCGTCCGTT.................................................... 21 1 4.00 0.00 0.00 1.00 3.00 0.00 ................................CCGGACGATGGCTCACAACGACC......................................................................................... 23 1 4.00 0.00 1.00 0.00 2.00 1.00 .......................................................................TAGGTGGGACTTTCGTCCGTT.................................................... 21 1 4.00 0.00 0.00 0.00 4.00 0.00 .......................................................................TCGGTGGGACTTTCGTACGTTT................................................... 22 1 3.00 1.00 0.00 0.00 2.00 0.00 .......................................................................TCGGTGGGACTTTCGTCCGTTTTT................................................. 24 1 3.00 0.00 0.00 1.00 2.00 0.00 .......................................................................TCGGTGGGACTCTCGTCCGTTT................................................... 22 1 3.00 0.00 0.00 1.00 2.00 0.00 .......................................................................CCGGTGGGACTTTCGTCCGTT.................................................... 21 1 3.00 0.00 0.00 0.00 2.00 1.00 .......................................................................TCGGTGGGACTTTCGACCGTT.................................................... 21 1 3.00 0.00 0.00 0.00 3.00 0.00 .......................................................................TCGGTGGGACTTTCGTCCCTTT................................................... 22 1 3.00 0.00 0.00 0.00 3.00 0.00 .......................................................................TCGGTGGGACTTTCGCCCGTTT................................................... 22 1 3.00 0.00 0.00 2.00 1.00 0.00 .......................................................................TCGGTGGGACTTTCGTCCGTCT................................................... 22 1 3.00 0.00 0.00 1.00 2.00 0.00 .......................................................................TCGGTGGGACTTTCGTCAGTT.................................................... 21 1 3.00 0.00 0.00 1.00 2.00 0.00 .......................................................................TCGGTGGGACTTTCGTCCGCTC................................................... 22 1 3.00 0.00 0.00 2.00 1.00 0.00 .......................................................................TCGGCGGGGCTTTCGTCCGTT.................................................... 21 1 3.00 0.00 0.00 0.00 3.00 0.00 .......................................................................TCGGTGGGACTTTCGTCTGTT.................................................... 21 1 3.00 0.00 0.00 2.00 1.00 0.00 .......................................................................TCGGTGGGACTTTCGTCCGTTTTTT................................................ 25 1 3.00 0.00 0.00 2.00 1.00 0.00 .......................................................................TCGGGGGGACTTTCCTCCGTTT................................................... 22 1 3.00 0.00 0.00 0.00 3.00 0.00 .......................................................................TCGGTGTGACTTTCGTCCGTTT................................................... 22 1 3.00 0.00 0.00 2.00 1.00 0.00 .......................................................................TCGGTGCGACTTTCGTCCGTTT................................................... 22 1 3.00 1.00 0.00 1.00 1.00 0.00 .......................................................................TCGGTGGGACTTTCGTCCG...................................................... 19 1 3.00 0.00 0.00 0.00 3.00 0.00 .......................................................................TCGGTGGGACTTTCGTACGTT.................................................... 21 1 3.00 0.00 0.00 1.00 2.00 0.00 .......................................................................TCGGAGGGTCTTTCGTCCGTTT................................................... 22 1 3.00 0.00 0.00 1.00 2.00 0.00 .......................................................................TCGGTGGGACTTTCGTCCGGTT................................................... 22 1 3.00 0.00 0.00 0.00 3.00 0.00 .......................................................................TCGGTGGGACTTTCGTCCATT.................................................... 21 1 3.00 0.00 0.00 0.00 3.00 0.00 .......................................................................TCGGTGGGACGTTCGTCCGTT.................................................... 21 1 3.00 0.00 0.00 1.00 2.00 0.00 ................................CCGGACGATGGTCCACAACGACC......................................................................................... 23 1 3.00 0.00 0.00 0.00 1.00 2.00 .......................................................................TCGGTGGGAGTTTCGTCCGTT.................................................... 21 1 3.00 0.00 0.00 0.00 3.00 0.00 .......................................................................TCGGTAGGACTTTCGTCCGTT.................................................... 21 1 3.00 0.00 0.00 3.00 0.00 0.00 .......................................................................TCGGGGGGGCTTTCGTCCGTT.................................................... 21 1 3.00 0.00 0.00 0.00 3.00 0.00 .......................................................................TCGGTGGGACTTTCGTCC....................................................... 18 1 3.00 0.00 0.00 0.00 1.00 2.00

droWil1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
2	scaffold_181009:1555699-1555856 -	57.54	TGATACGAGA---------------------------CCATGGTAATGGTACGGTGCGACCGGATGATGGTTCACAACGACCGTGTCATTTAAACGGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAACGATTTATCAGTGTCCGT--- TGTAACGAGTTAAAAAAAAATAAGGGGAGATCCCCCATAATGGTAATGGTACGGTGCGACCGGATGACGGTTCACAACGACCGTGTCAATTTTACTGGTCGGTGGGACTTTCGTCCGTTTGTAACGCCATTTGTCAACGATTTATCATAATCTCTAGG Size Hit Count Total Norm V117 Male body V118 Embryo V119 Head M020 Head ..................................................................................................TCGGTGGGACTTTCGTCCGTT....................................... 21 1 10362.00 17.00 9.00 261.00 10075.00 ..................................................................................................TCGGTGGGACTTTCGTCCGTTT...................................... 22 1 4837.00 135.00 65.00 308.00 4329.00 ...........................................................CCGGATGACGGTTCACAACGACC............................................................................ 23 1 742.00 19.00 128.00 262.00 333.00 ..................................................................................................TCGGTGGGACTTTCGTCCGT........................................ 20 1 580.00 0.00 1.00 0.00 579.00 ..................................................................................................TCGGTGGGACTTTCTTCCGTT....................................... 21 1 396.00 0.00 0.00 0.00 396.00 ..................................................................................................TCGGTGGGACTTTCGTCCG......................................... 19 1 238.00 0.00 0.00 0.00 238.00 ..................................................................................................TCGGTGGGACTTTCxTCCGTT....................................... 20 1 225.00 0.00 0.00 0.00 225.00 ..................................................................................................TCGGTGGGACTTTCCTCCGTT....................................... 21 1 173.00 0.00 0.00 0.00 173.00 ..................................................................................................TCGGTGGGACTTTCGTCCGTC....................................... 21 1 164.00 0.00 0.00 0.00 164.00 ..................................................................................................TCGGTGGGACTTTCGTCCGTTTC..................................... 23 1 139.00 0.00 0.00 11.00 128.00 ..................................................................................................TCGGTGGGACTTTCGTCCGG........................................ 20 1 94.00 0.00 0.00 0.00 94.00 ..................................................................................................TCGGTGGGACTTTCGTCCGTTC...................................... 22 1 92.00 1.00 0.00 2.00 89.00 ..................................................................................................TCGGTGGGACTTTCGTCCGC........................................ 20 1 67.00 0.00 0.00 0.00 67.00 ...........................................................CCGGATGACTGTTCACAACGACC............................................................................ 23 1 47.00 0.00 0.00 1.00 46.00 ..................................................................................................TCGGTGGGACTTTCGTCCGTTTT..................................... 23 1 43.00 6.00 0.00 8.00 29.00 ..................................................................................................TCGGTGGGACTTTCGTCCGTTTCC.................................... 24 1 39.00 0.00 0.00 3.00 36.00 ...........................................................CCGGATGACGTTTCACAACGACC............................................................................ 23 1 35.00 0.00 0.00 0.00 35.00 ...........................................................CCGGACGATGGTTCACAACGACC............................................................................ 23 1 35.00 0.00 0.00 0.00 35.00 ..................................................................................................TCGGTGGGACTTTCGGCCGTT....................................... 21 1 33.00 0.00 0.00 0.00 33.00 ..................................................................................................TCGGTGGGACTTTCGTCC.......................................... 18 1 31.00 0.00 0.00 0.00 31.00 ..................................................................................................TCGGTGGGACTTTCGTCCGTGG...................................... 22 1 29.00 0.00 0.00 0.00 29.00 ..................................................................................................TCGGTGGGACTTTCGTCCGTG....................................... 21 1 27.00 0.00 0.00 0.00 27.00 ..................................................................................................TCGGTGGGACTTGCGTCCGTT....................................... 21 1 26.00 0.00 0.00 0.00 26.00 ..................................................................................................TCGGTGGGACTTTCATCCGTT....................................... 21 1 25.00 0.00 0.00 1.00 24.00 ..................................................................................................TCGGGGGGACTTTCGTCCGTT....................................... 21 1 23.00 0.00 0.00 0.00 23.00 ..................................................................................................TCGGTGGGGCTTTCGTCCGTT....................................... 21 1 21.00 0.00 0.00 0.00 21.00 ..................................................................................................TCGGTGGGACTTTCGTCCGGT....................................... 21 1 21.00 0.00 0.00 0.00 21.00 ..................................................................................................TCGGTGGGACTTTCxTCCGTTT...................................... 21 1 20.00 0.00 0.00 0.00 20.00 ..................................................................................................TCGGTGGGACTTACGTCCGTT....................................... 21 1 18.00 0.00 0.00 0.00 18.00 ..................................................................................................TCGGTGGGACTTTCTTCCGTTT...................................... 22 1 18.00 0.00 0.00 1.00 17.00 ...........................................................CCGGATGACxGTTCACAACGACC............................................................................ 22 1 17.00 0.00 0.00 1.00 16.00 ..................................................................................................TCGGTGGGACTTTCGCCCGTT....................................... 21 1 17.00 0.00 0.00 0.00 17.00 ...........................................................CCGGATGACGGTTCACAACG............................................................................... 20 1 17.00 0.00 0.00 2.00 15.00 ..................................................................................................TCTGTGGGACTTTCGTCCGTT....................................... 21 1 16.00 0.00 0.00 0.00 16.00 ..................................................................................................TCGGTGGGACTTTCGGCCGTTT...................................... 22 1 15.00 0.00 0.00 1.00 14.00 ...........................................................CCGGATGACGGTTCACAACGAC............................................................................. 22 1 15.00 2.00 6.00 4.00 3.00 ..................................................................................................TCGGTGGGACxTTCCTCCGTT....................................... 20 1 14.00 0.00 0.00 0.00 14.00 ..................................................................................................TCGGTGGGCCTTTCGTCCGTT....................................... 21 1 14.00 0.00 0.00 0.00 14.00 .................................................................................................GTCGGTGGGACTTTCGTCCGTT....................................... 22 1 14.00 0.00 0.00 0.00 14.00 ..................................................................................................TCGGTGGGACTTTxTTCCGTT....................................... 20 1 14.00 0.00 0.00 0.00 14.00 ..................................................................................................TCGGTGGGACTTGCGTCCGTTT...................................... 22 1 13.00 0.00 0.00 0.00 13.00 ..................................................................................................TCGGTGGGACTTACGTCCGTTT...................................... 22 1 12.00 0.00 0.00 1.00 11.00 ...........................................................CCGGATGACCGTTCACAACGACC............................................................................ 23 1 12.00 0.00 0.00 0.00 12.00 ..................................................................................................TCGGCGGGACTTTCGTCCGTT....................................... 21 1 12.00 0.00 0.00 2.00 10.00 ..................................................................................................TCGGTGGGACTTTTGTCCGTT....................................... 21 1 11.00 0.00 0.00 0.00 11.00 ..................................................................................................TCGGTGGGACTTTCGTTCGTTT...................................... 22 1 11.00 2.00 0.00 2.00 7.00 ...........................................................CCGGATGACGGTTCACAACGACCT........................................................................... 24 1 11.00 1.00 0.00 1.00 9.00 ..................................................................................................TCGGTTGGACTTTCGTCCGTT....................................... 21 1 11.00 0.00 0.00 1.00 10.00 ..................................................................................................TCGGAGGGACTTTCGTCCGTT....................................... 21 1 10.00 0.00 0.00 1.00 9.00 ..................................................................................................TCGGTGGGACTTTCGTCCGTTCC..................................... 23 1 10.00 0.00 0.00 3.00 7.00 ..................................................................................................TCGGTGGGACTTTCGTCCGGTT...................................... 22 1 10.00 0.00 0.00 0.00 10.00 ..................................................................................................TCGGTGGGACTTTCGTCCGTTG...................................... 22 1 9.00 0.00 0.00 0.00 9.00 ..................................................................................................TCTGTGGGACTTTCGTCCGTTT...................................... 22 1 9.00 0.00 0.00 2.00 7.00 ..................................................................................................TCGGTGGGACTTTCCTCCGTC....................................... 21 1 9.00 0.00 0.00 0.00 9.00 ..................................................................................................TCGGTGGGACTTTCGTCCGTTA...................................... 22 1 8.00 0.00 3.00 1.00 4.00 ...................................................................................................TCGTGGGACTTTCGTCCGTT....................................... 20 1 8.00 0.00 0.00 0.00 8.00 ..................................................................................................TCGGTAGGACTTTCGTCCGTT....................................... 21 1 8.00 0.00 0.00 1.00 7.00 ..................................................................................................TCGGTGGTACTTTCGTCCGTT....................................... 21 1 8.00 0.00 0.00 0.00 8.00 ..................................................................................................TCAGTGGGACTTTCGTCCGTT....................................... 21 1 8.00 0.00 0.00 1.00 7.00 ..................................................................................................TCGGTGGGACTTTCGTCCGTTTA..................................... 23 1 8.00 0.00 1.00 4.00 3.00 ..................................................................................................TCGGTGGGACCTTCGTCCGTT....................................... 21 1 8.00 0.00 0.00 0.00 8.00 .................................................................................................GTCGGTGGGACTTTCGTCCGT........................................ 21 1 7.00 0.00 0.00 0.00 7.00 ....................................................................................................GGTGGGACTTTCGTCCGTTT...................................... 20 1 7.00 0.00 0.00 4.00 3.00 ..................................................................................................TCGGTGGGACTTTCGTCCTTTT...................................... 22 1 7.00 0.00 2.00 2.00 3.00 ..................................................................................................TCAGTGGGACTTTCGTCCGTTT...................................... 22 1 7.00 0.00 0.00 3.00 4.00 ..................................................................................................TCGGTGGGCCTTTCGTCCGTTT...................................... 22 1 7.00 0.00 0.00 1.00 6.00 ..................................................................................................TCGGTGGGACTTCCGTCCGTT....................................... 21 1 7.00 0.00 0.00 0.00 7.00 ..................................................................................................TCGTTGGGACTTTCGTCCGTTT...................................... 22 1 7.00 0.00 1.00 0.00 6.00 ..................................................................................................TCGGTxGGACTTTCGTCCGTT....................................... 20 1 7.00 0.00 0.00 2.00 5.00 ..................................................................................................TCGGTGGGACTTTCCTCCGTTT...................................... 22 1 7.00 0.00 0.00 1.00 6.00 ..................................................................................................TCGGTGGGAATTTCGTCCGTT....................................... 21 1 6.00 0.00 0.00 4.00 2.00 ..................................................................................................TCGGTGGGACTTTCGTCCGCT....................................... 21 1 6.00 0.00 0.00 0.00 6.00 ..................................................................................................TCGGTGCGACTTTCGTCCGTT....................................... 21 1 6.00 0.00 0.00 0.00 6.00 ..................................................................................................TCGGTGTGACTTTCGTCCGTT....................................... 21 1 6.00 0.00 0.00 1.00 5.00 ...........................................................CCGGATGATGGTTCACAACGACC............................................................................ 23 1 6.00 0.00 1.00 0.00 5.00 ...........................................................CCGGATGACTGTTCACAACGAC............................................................................. 22 1 5.00 0.00 0.00 0.00 5.00 ..................................................................................................TCGGTGGGGCTTTCGTCCGTTT...................................... 22 1 5.00 0.00 0.00 1.00 4.00 ..................................................................................................TCGGTGGGACTTTCxTCCGT........................................ 19 1 5.00 0.00 0.00 0.00 5.00 ..................................................................................................TCGGTGGGACTTTCGTCTGTT....................................... 21 1 5.00 0.00 0.00 2.00 3.00 ..................................................................................................TCGGTGGGACTTTCCTCCGT........................................ 20 1 5.00 0.00 0.00 0.00 5.00 ...........................................................CCGGATGACGCTTCACAACGACC............................................................................ 23 1 5.00 0.00 0.00 0.00 5.00 ..................................................................................................TCGGTGGGACTTTCTTCCGT........................................ 20 1 5.00 0.00 0.00 0.00 5.00 ..................................................................................................TCGGTGGGACTTTCGTCCGTTCT..................................... 23 1 5.00 0.00 0.00 1.00 4.00 ..................................................................................................TCGGTGGGACTTTCGTTCGTT....................................... 21 1 4.00 1.00 0.00 0.00 3.00 ...........................................................CCGGATGACGGTTCACAACGACCG........................................................................... 24 1 4.00 0.00 1.00 1.00 2.00 ..................................................................................................TCGGTGGGACTTTCGTCCGTCT...................................... 22 1 4.00 0.00 0.00 1.00 3.00 ..................................................................................................TCGGTGGGACCTTCGTCCGTTT...................................... 22 1 4.00 0.00 0.00 0.00 4.00 ..................................................................................................TCGGTGAGACTTTCGTCCGTTT...................................... 22 1 4.00 0.00 0.00 0.00 4.00 ...........................................................CCGGATGACGGTTCACAACGACA............................................................................ 23 1 4.00 0.00 0.00 1.00 3.00 ..................................................................................................TCGGTGGGACTTTTGTCCGTTT...................................... 22 1 4.00 0.00 0.00 0.00 4.00 .................................................................................................CTCGGTGGGACTTTCGTCCGTT....................................... 22 1 4.00 0.00 0.00 0.00 4.00 ..................................................................................................TCGGTGGGATTTTCGTCCGTT....................................... 21 1 4.00 1.00 0.00 0.00 3.00 ..................................................................................................TCGGTGGGACTTTCGTCGTTT....................................... 21 1 4.00 1.00 0.00 3.00 0.00 ..................................................................................................TCGGTGGGACTTTCGTCCATT....................................... 21 1 4.00 0.00 0.00 3.00 1.00 ..................................................................................................TCCGTGGGACTTTCGTCCGTT....................................... 21 1 4.00 0.00 0.00 0.00 4.00 ..................................................................................................TCGGTGGGACTTTCGTCCGCTT...................................... 22 1 4.00 0.00 1.00 0.00 3.00 ..................................................................................................TCGGTTGGACTTTCCTCCGTT....................................... 21 1 4.00 0.00 0.00 0.00 4.00 ..................................................................................................TCGGTGGGACTTTCxTCCGTC....................................... 20 1 4.00 0.00 0.00 0.00 4.00 ..................................................................................................TCGGCGGGACTTTCGTCCGT........................................ 20 1 4.00 0.00 0.00 0.00 4.00 ..................................................................................................TCGTTGGGACTTTCGTCCGTT....................................... 21 1 4.00 0.00 0.00 1.00 3.00 ..................................................................................................TCGGGGGGACTTTCGTCCGTTT...................................... 22 1 4.00 0.00 0.00 0.00 4.00

droVir3 - 1 hit found