dme-mir-276b-as- 12- and 20-way alignments

dme-mir-276b-as	chr3L:10312885-10312983 -	Candidate
	[View on UCSC Genome Browser {Cornell Mirror}]	intergenic

Legend:

   mature strand at position 10312906-10312927
   mutations
   read mismatches
   coordinate mismatch (possible incorrect ortholog)

12-way Fast Statistical Aligner re-alignment (From MAFs)

Species	Coordinate	Alignment
dm3	chr3L:10312870-10312998 -	TTTTAACT---------ATATGCTGGTCGACAGTCCTCCAAGAGCACGGTATTAAGTTCCTACGACT---G-AATATAGGAACGTAGGAACTCTATACCTCGCTGATGGTAAAAAGACTTCGGTTTT-------TT--T-----CGTTCGATGGTC
droSim1	chr3L:9702897-9703022 -	TTTCAACT---------ATATGATGGTCGACAGTCCTCCAAGAGCACGGTATTAAGTTCCTACGACT---G-AAT--AGGAACGTAGGAACTCTATACCTCGCTGATGGTAAAAAGACTTCGGTTTT-------TT--------CGGTCGATGGTC
droSec1	super_0:2526747-2526871 -	TTTCAACT---------ATATGATGGTCGACAGTCCTCCAAGAGCACGGTATTAAGTTCCTACGACT---G-AAT--AGGAACGTAGGAACTCTATACCTCGCTGATGGTAAAAAGACTTCGGTTTT-------TT--------CGTTCG-TGGTC
droYak2	chr3L:10302128-10302256 -	TTTTAACT---------TTATGATGGTCGACAGTCCTCCAAGAGCACGGTATTAAGTTCCTACGACT---G-AAT--AGGAACGTAGGAACTCTATACCTCGCTGATGGTAAAAAGACTTCGGTTTT-------TTGTT-----CTTTCTGTTGTC
droEre2	scaffold_4784:10306167-10306292 -	TTTCAACT---------TTATGATGGTCGACAGTCCTCCAAGAGCACGGTATTAAGTTCCTACGACT---G-AAT--AGGAACGTAGGAACTCTATACCTCGCTGATGGTAAAAAGACTTCGGTTTT-------TT--T------ATTCGGTTGTC
droAna3	scaffold_13337:15233359-15233489 -	CACT---T---------TCATGATGGTCGACAGCCCTCCAAGAGCACGGTATTAAGTTCCTACGACTAGTTTAAG--TGGCACGTAGGAACTCTATACCTCGCTGATGGCAAATAGGCTTCGGTTTC-------TT--CAGAAA--TTCAGAAGGA
dp4	chrXR_group6:8706022-8706135 -	---------------------GTTGATGGACAGCCCTCCAAGAGCACGGTATTAAGTTCCTACGACT-TTG-GATA-CGGCACGTAGGAACTCTATACCTCGCTGATGGTAAAGAGGCTTCGCTTTAGATACTTTT--------CG----------
droPer1	super_27:1146097-1146210 -	---------------------GTTGATGGACAGCCCTCCAAGAGCACGGTATTAAGTTCCTACGACT-TTG-GATA-CGGCACGTAGGAACTCTATACCTCGCTGATGGTAAAGAGGCTTCGCTTTAGATACTTTT--------CG----------
droWil1	scaffold_181024:290398-290516 +	TT------------------TGTTGTTCGACAGCCCTCCAAGAGCACGGTATTAAGTTCCTACGATTATTGCAAT--TTGCACGTAGGAACTCTATACCTCGCTTATGGTAAATAGGCTTCGTTTAT-------TT--------CAAA--TTTGTT
droVir3	scaffold_13049:16093197-16093326 -	TCTTTTCT------------TGCTGGTCGACAGCCCTCCAAGAGCACGGTATTAAGTTCCTACGATTATTGCAAT--TTGCACGTAGGAACTCTATACCTCGCTGATGGTATATAGACTTCGGTATC-------TT--TAAATC--TTAAGAT-AT
droMoj3	scaffold_6680:20678201-20678328 +	ACTTTATTCG-------TTTTGTTGGTCGACAGCCCTCCAAGAGCACGGTATTAAGTTCCTACGACTATTGCAAT--TTGCACGTAGGAACTCTATACCTCGCTGATGGTATATAGACTTCGTTATC-------TT--TA----CAATCT------
droGri2	scaffold_15110:12572308-12572448 +	ACTTAATT-GTTTTGATCAATGCTGGTCGACAGCCCTCCAAGAGCACGGTATTAAGTTCCTACGATTATTGCAAT--TTGCACGTAGGAACTCTATACCTCGCTAATGGTAAATAGACTTCGTTATC-------TT--TCGGTT--TTGAG-ATTT

20-way Fast Statistical Aligner re-alignment (Top LASTZ hits)

Species	Coordinate	Lastz Id	Alignment
dm3	chr3L:10312870-10312998 -	NA	TT--------TTAA--CTAT--------A--TGCTGGTCGACAGTCCTCCAAGAGCACGGTATTAAGTTCCTACGACT----GAATATAGGAACGTAGGAACTCTATACCTCGCTGATGGTAAAAAGACTTCGGTTTTTTT---------------------CG--TTC-GATGGTC
droSim1	chr3L:9702897-9703022 -	1	TT--------TCAA--CTAT--------A--TGATGGTCGACAGTCCTCCAAGAGCACGGTATTAAGTTCCTACGACT----GAATA--GGAACGTAGGAACTCTATACCTCGCTGATGGTAAAAAGACTTCGGTTTTTTC----------------------G--GTC-GATGGTC
droSec1	super_0:2526747-2526871 -	1	TT--------TCAA--CTAT--------A--TGATGGTCGACAGTCCTCCAAGAGCACGGTATTAAGTTCCTACGACT----GAATA--GGAACGTAGGAACTCTATACCTCGCTGATGGTAAAAAGACTTCGGTTTTTTC----------------------G--TTC--GTGGTC
droYak2	chr3L:10302128-10302256 -	1	TT--------TTAA--CTTT--------A--TGATGGTCGACAGTCCTCCAAGAGCACGGTATTAAGTTCCTACGACT----GAATA--GGAACGTAGGAACTCTATACCTCGCTGATGGTAAAAAGACTTCGGTTTTTTG-------------------TTCT--TTC-TGTTGTC
droEre2	scaffold_4784:10306167-10306292 -	1	TT--------TCAA--CTTT--------A--TGATGGTCGACAGTCCTCCAAGAGCACGGTATTAAGTTCCTACGACT----GAATA--GGAACGTAGGAACTCTATACCTCGCTGATGGTAAAAAGACTTCGGTTTTTTT----------------------A--TTC-GGTTGTC
droEug1	scf7180000409711:2174289-2174430 -	2	TT--------TAAA--CTTT--------A--CGATGGTCGACAGCCCTCCAAGAGCACGGTATTAAGTTCCTACGACT----AAATA--GAAACGTAGGAACTCTATACCTCGCTGATGGTAAAAAGGCTTCGGTATTTTC------TTTGTTTTTCTTGGCCC--TTC-GATGGAC
droBia1	scf7180000302428:7436352-7436478 +	3	TT--------TCAA--GTTT--------T--GGATGGTCGACAGCCCTCCAAGAGCACGGTATTAAGTTCCTACGACT----GAATA--GGAACGTAGGAACTCTATACCTCGCTGATGGTAAAAAGACTTCGGTTTTTTG---------------------TA--TTC-GACGGTC
droTak1	scf7180000415209:361628-361756 -	2	TT--------TCAA--CTTT--------A--TGATGGTCGACAGCCCTCCAAGAGCACGGTATTAAGTTCCTACGACG----GAATA--GGAACGTAGGAACTCTATACCTCGCTGATGGTAAAAAGGCTTCGGTTATTTC------T-------------TCG--TTC-GATGGTC
droEle1	scf7180000490564:1145980-1146108 -	3	TG--------TTAATTCTTT--------A--TGTTGGTCGACAGTCCTCCAAGAGCACGGTATTAAGTTCCTACGATT----AAATG--GGAACGTAGGAACTCTATACCTCGCTGATGGTATAAAGACTTCGGTTTTCTG---------------------CT--TTG-AATGGTC
droRho1	scf7180000780105:56692-56817 +	2	TG--------TAAA--CTTT--------A--TGTTGGTCGACAGCCCTCCAAGAGCACGGTATTAAGTTCCTACGACT----GAATA--GGAACGTAGGAACTCTATACCTCGCTGATGGTAAA-AGACTTCGGATTTTTG---------------------GT--TTC-AATGGTC
droFic1	scf7180000453841:740991-741120 +	3	TT--------TAGT--TTTT--------ATTTGATGGACGACAGCCCTCCAAGAGCACGGTATTAAGTTCCTACGACT----GAATT--TGAACGTAGGAACTCTATACCTCGCTTATGGTAAAAAGGCTTCGGATTTGGG---------------------GT--TTCTGATGGTC
droKik1	scf7180000302334:94650-94789 +	4	CTCTATAATAAACA--CTTT--------A--TGTTGGTCGACAGCCCTCCAAGAGCACGGTATTAAGTTCCTACGACTATTTG---A--GGAACGTAGGAACTCTATACCTCGCTGATGGCAAAAAGGCTTCGTTTGTTTT-----------------TGGCTT--TTC-AGTCTTC
droAna3	scaffold_13337:15233368-15233487 -	2	CT--------T-------TC--------A--TGATGGTCGACAGCCCTCCAAGAGCACGGTATTAAGTTCCTACGACTAGTTTAAGT--GGCACGTAGGAACTCTATACCTCGCTGATGGCAAATAGGCTTCGGTTTCTTC----------------------A--------GAAAT
droBip1	scf7180000395933:88091-88219 -	2	GA--------AAGA--CTTT--------C-TCGATGGTCGACAGCCCTCCAAGAGCACGGTATTAAGTTCCTACGACTAGTTAAAGT--GGCACGTAGGAACTCTATACCTCGCTGATGGTAAATAGGCTTCGGTTTCTTA--------------------------TA-GAATCTT
dp4	chrXR_group6:8706030-8706135 -	1	--------------------------------GTTGATGGACAGCCCTCCAAGAGCACGGTATTAAGTTCCTACGACT-TT-GGATA-CGGCACGTAGGAACTCTATACCTCGCTGATGGTAAAGAGGCTTCGCTTT------------------------------------AGAT
droPer1	super_27:1146105-1146210 -	4	--------------------------------GTTGATGGACAGCCCTCCAAGAGCACGGTATTAAGTTCCTACGACT-TT-GGATA-CGGCACGTAGGAACTCTATACCTCGCTGATGGTAAAGAGGCTTCGCTTT------------------------------------AGAT
droWil1	scaffold_181024:290397-290516 +	1	TT-----------------------------TGTTGTTCGACAGCCCTCCAAGAGCACGGTATTAAGTTCCTACGATTATTGCAATT--TGCACGTAGGAACTCTATACCTCGCTTATGGTAAATAGGCTTCGTTTATTTC----------------------A--A---ATTTGTT
droVir3	scaffold_13049:16093198-16093326 -	1	TC--------TTTT--C-----------T--TGCTGGTCGACAGCCCTCCAAGAGCACGGTATTAAGTTCCTACGATTATTGCAATT--TGCACGTAGGAACTCTATACCTCGCTGATGGTATATAGACTTCGGTATCTTT---------------------AA--ATCTTAAGATA
droMoj3	scaffold_6680:20678203-20678343 +	5	TT--------TATT--CGTT--------T--TGTTGGTCGACAGCCCTCCAAGAGCACGGTATTAAGTTCCTACGACTATTGCAATT--TGCACGTAGGAACTCTATACCTCGCTGATGGTATATAGACTTCGTTATCTTTACAATCTCTG-----------TT--TCA-CTTGGTC
droGri2	scaffold_15110:12572308-12572448 +	3	AC--------TTAA--TTGTTTTGATCAA--TGCTGGTCGACAGCCCTCCAAGAGCACGGTATTAAGTTCCTACGATTATTGCAATT--TGCACGTAGGAACTCTATACCTCGCTAATGGTAAATAGACTTCGTTATCTTT---------------------CGGTTTT-GAGATTT

[View All Possible Orthologs]

Original 12-way multiz alignment with reads super-imposed

Species

Alignment

dm3

TTTTAACT---------ATATGCTGGTCGACAGTCCTCCAAGAGCACGGTATTAAGTTCCTACGACT---G-AATATAGGAACGTAGGAACTCTATACCTCGCTGATGGTAAAAAGACTTCGGTTTT-------TT--T-----CGTTCGATGGTC

Size

Hit Count

Total Norm

droSim1

TTTCAACT---------ATATGATGGTCGACAGTCCTCCAAGAGCACGGTATTAAGTTCCTACGACT---G-AAT--AGGAACGTAGGAACTCTATACCTCGCTGATGGTAAAAAGACTTCGGTTTT-------TT--------CGGTCGATGGTC	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
....................................................................................TAGGAACTTCATACCTCG......................................................	18	6	0.33	0.00	0.33	0.00	0.00
...........................................................................................................................GTTT-------TT--------CGGTCGATCGTC	18	2	0.50	0.00	0.50	0.00	0.00
....................................................................................TAAGAACTCTATACCTAG......................................................	18	4	0.25	0.00	0.25	0.00	0.00

droSec1

TTTCAACT---------ATATGATGGTCGACAGTCCTCCAAGAGCACGGTATTAAGTTCCTACGACT---G-AAT--AGGAACGTAGGAACTCTATACCTCGCTGATGGTAAAAAGACTTCGGTTTT-------TT--------CGTTCG-TGGTC	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
..........................................AGCGCGGTATAAAGTTCCTACG............................................................................................	22	8	0.63	0.38	0.00	0.25
..........................................................................................CTCTATACCTCGCTGATGGCA.............................................	21	4	0.25	0.00	0.00	0.25
..........................................AGCGCGGTATTGAGTTCCTACG............................................................................................	22	6	0.17	0.00	0.00	0.17
..........................................AGCGCGGTATCAAGTTCCTACG............................................................................................	22	4	0.25	0.00	0.00	0.25
..........................................AGCGAGGTATTAAGTTCCT...............................................................................................	19	6	0.17	0.00	0.00	0.17
..........................................AGCAAGGTATAAAGTTCCTACG............................................................................................	22	8	0.13	0.00	0.00	0.13
..........................................AGCACGGTATAGAGTTCCTACG............................................................................................	22	8	0.13	0.00	0.00	0.13

droYak2

TTTTAACT---------TTATGATGGTCGACAGTCCTCCAAGAGCACGGTATTAAGTTCCTACGACT---G-AAT--AGGAACGTAGGAACTCTATACCTCGCTGATGGTAAAAAGACTTCGGTTTT-------TTGTT-----CTTTCTGTTGTC	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
..........................................AGCGCGGTATAAAGTTCCTACG............................................................................................	22	8	0.50	0.38	0.00	0.00	0.13	0.00
....................................................................................TAGGAACTTCATACCTCGCT....................................................	20	6	0.17	0.00	0.00	0.00	0.17	0.00
....................................................................................TAGGAACTTCATACCTCG......................................................	18	6	0.17	0.00	0.00	0.00	0.17	0.00
....................................................................................TAGGAACTTTATACCGCGCT....................................................	20	8	0.13	0.00	0.00	0.00	0.13	0.00
..........................................AGCGCGGTATTGAGTTCCTACG............................................................................................	22	6	0.17	0.17	0.00	0.00	0.00	0.00
..........................................AGCGCGGTATTAAGTTCCTACG............................................................................................	22	4	0.25	0.00	0.00	0.00	0.25	0.00
..........................................AGCAAGGTATAAAGTTCCTACG............................................................................................	22	8	0.13	0.00	0.00	0.00	0.13	0.00
..........................................AGCACGGTATAGAGTTCCTACG............................................................................................	22	8	0.13	0.00	0.00	0.00	0.13	0.00
....................................................................................TAGGAACTGTATACCGCGCT....................................................	20	4	0.25	0.00	0.25	0.00	0.00	0.00

droEre2

TTTCAACT---------TTATGATGGTCGACAGTCCTCCAAGAGCACGGTATTAAGTTCCTACGACT---G-AAT--AGGAACGTAGGAACTCTATACCTCGCTGATGGTAAAAAGACTTCGGTTTT-------TT--T------ATTCGGTTGTC	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
....................................................................................TAGGAACTTTATACCTCGCTCA..................................................	22	4	0.25	0.00	0.25	0.00	0.00
..........................................AGCACGGTATAAAGTTCCTCCG............................................................................................	22	4	0.25	0.25	0.00	0.00	0.00
...............................................................................................................ATTAGACTTCGGTTTT-------TT--..................	18	2	0.50	0.00	0.00	0.50	0.00
..........................................AGCGCGGTATCAAGTTCCTACG............................................................................................	22	4	0.25	0.25	0.00	0.00	0.00
....................................................................................TAGGAACTTCATACCTCGCTG...................................................	21	4	0.25	0.00	0.25	0.00	0.00

droAna3

CACT---T---------TCATGATGGTCGACAGCCCTCCAAGAGCACGGTATTAAGTTCCTACGACTAGTTTAAG--TGGCACGTAGGAACTCTATACCTCGCTGATGGCAAATAGGCTTCGGTTTC-------TT--CAGAAA--TTCAGAAGGA	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
..........................................AGCGCGGTATAAAGTTCCTACG............................................................................................	22	8	0.50	0.00	0.00	0.50	0.00
..........................................AGCGCGGTATTGAGTTCCTACG............................................................................................	22	6	0.33	0.17	0.00	0.17	0.00
...............................................................................................................ATTAGGCTTCGGTTTG-------TT--..................	18	2	1.00	0.00	0.00	1.00	0.00
..........................................AGCACGGTATAGAGTTCCTACG............................................................................................	22	8	0.25	0.00	0.13	0.13	0.00
..........................................AGCACGGTATACAGTTCCTACG............................................................................................	22	4	0.25	0.00	0.00	0.25	0.00
....................................................................................TAGGAACTTTATACCGCGCT....................................................	20	8	0.13	0.00	0.00	0.13	0.00
....................................................................................TAGGAACTTAATACCTCGCT....................................................	20	6	0.17	0.00	0.00	0.17	0.00
..........................................AGCATGGTATAAAGTTCCTACG............................................................................................	22	4	0.25	0.00	0.00	0.25	0.00
..........................................AGCACGGTATAAAGTTCCTACG............................................................................................	22	4	0.25	0.00	0.00	0.25	0.00
...............................................................................................................ATTAGACTTCGGTTTC-------TT--..................	18	2	0.50	0.00	0.00	0.00	0.50
....................................................................................TAGGAACTCCATACCTCGCTC...................................................	21	4	0.25	0.00	0.00	0.25	0.00

dp4

---------------------GTTGATGGACAGCCCTCCAAGAGCACGGTATTAAGTTCCTACGACT-TTG-GATA-CGGCACGTAGGAACTCTATACCTCGCTGATGGTAAAGAGGCTTCGCTTTAGATACTTTT--------CG----------	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
....................................................................................TTGAAACTCTATACCTCGCTGA..................................................	22	4	0.25	0.00	0.25	0.00	0.00

droPer1

---------------------GTTGATGGACAGCCCTCCAAGAGCACGGTATTAAGTTCCTACGACT-TTG-GATA-CGGCACGTAGGAACTCTATACCTCGCTGATGGTAAAGAGGCTTCGCTTTAGATACTTTT--------CG----------	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
..........................................AGCACGGTATAGAGTTCCTACG............................................................................................	22	8	0.38	0.00	0.00	0.00	0.38	0.00
..........................................AGCGCGGTATTGAGTTCCTACG............................................................................................	22	6	0.33	0.00	0.00	0.00	0.33	0.00
..........................................AGCGCGGTATAAAGTTCCTACG............................................................................................	22	8	0.25	0.00	0.00	0.00	0.25	0.00
..........................................AGCACGGTATAGAGTTCCT...............................................................................................	19	8	0.13	0.00	0.00	0.00	0.13	0.00
....................................................................................TAGGAACTATATACCGCGCTG...................................................	21	4	0.25	0.00	0.00	0.00	0.25	0.00
....................................................................................TAGGAACTCCATACCTCGCTC...................................................	21	4	0.25	0.00	0.00	0.00	0.25	0.00
....................................................................................AAGGAGCTCTATACCTCGCTG...................................................	21	4	0.25	0.00	0.00	0.00	0.25	0.00
....................................................................................TAGGAACTTCATACCTCGCT....................................................	20	6	0.17	0.00	0.00	0.00	0.17	0.00
..........................................AGCACGGTATAAAGTTCCT...............................................................................................	19	4	0.25	0.00	0.00	0.00	0.25	0.00
..........................................AGCACGGTxTTAACTTCCTA..............................................................................................	19	2	0.50	0.00	0.00	0.00	0.50	0.00
....................................................................................TAGGAACTTTATACCTCGCTC...................................................	21	4	0.25	0.00	0.00	0.00	0.25	0.00
..........................................AGCACGGTATCGAGTTCCTACG............................................................................................	22	4	0.25	0.00	0.00	0.00	0.25	0.00
....................................................................................TAGGAACTTTAGACCTCGCTGA..................................................	22	4	0.25	0.00	0.00	0.25	0.00	0.00

droWil1

TT------------------TGTTGTTCGACAGCCCTCCAAGAGCACGGTATTAAGTTCCTACGATTATTGCAAT--TTGCACGTAGGAACTCTATACCTCGCTTATGGTAAATAGGCTTCGTTTAT-------TT--------CAAA--TTTGTT	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
..........................................AGCGCGGTATAAAGTTCCTACG............................................................................................	22	8	1.25	0.00	0.13	1.13	0.00
..........................................AGCACGGTATAGAGTTCCTACG............................................................................................	22	8	0.63	0.00	0.00	0.63	0.00
..........................................AGCAAGGTATAAAGTTCCTACG............................................................................................	22	8	0.25	0.00	0.00	0.25	0.00
..........................................AGCGCGGTATTGAGTTCCTACG............................................................................................	22	6	0.17	0.00	0.00	0.17	0.00
....................................................................................TAGGAACTTAATACCTCG......................................................	18	6	0.17	0.00	0.00	0.00	0.17

droVir3

TCTTTTCT------------TGCTGGTCGACAGCCCTCCAAGAGCACGGTATTAAGTTCCTACGATTATTGCAAT--TTGCACGTAGGAACTCTATACCTCGCTGATGGTATATAGACTTCGGTATC-------TT--TAAATC--TTAAGAT-AT	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
..........................................AGCGCGGTATTGAGTTCCTACG............................................................................................	22	6	0.33	0.00	0.33	0.00	0.00	0.00
..........................................AGCACGGTATAGAGTTCCTACG............................................................................................	22	8	0.13	0.00	0.13	0.00	0.00	0.00
..........................................AGCGCGGTATAAAGTTCCTACG............................................................................................	22	8	0.13	0.00	0.13	0.00	0.00	0.00
....................................................................................TAGGAACTTTATACCTxGCTGAT.................................................	22	4	0.25	0.00	0.25	0.00	0.00	0.00

droMoj3

ACTTTATTCG-------TTTTGTTGGTCGACAGCCCTCCAAGAGCACGGTATTAAGTTCCTACGACTATTGCAAT--TTGCACGTAGGAACTCTATACCTCGCTGATGGTATATAGACTTCGTTATC-------TT--TA----CAATCT------	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
..........................................AGCGCGGTATAAAGTTCCTACG............................................................................................	22	8	0.63	0.00	0.38	0.25	0.00
....................................................................................TAGGAACTTCATACCTCGCT....................................................	20	6	0.33	0.00	0.33	0.00	0.00
..........................................AGCAAGGTATAAAGTTCCT...............................................................................................	19	8	0.13	0.00	0.13	0.00	0.00
..........................................AGCACGGTTTAAAGTTCCT...............................................................................................	19	4	0.25	0.00	0.00	0.00	0.25
....................................................................................TAGGAACTCCATACCGCGCTG...................................................	21	4	0.25	0.00	0.00	0.25	0.00
.................TTTTGTTGGACGCCAGCC.........................................................................................................................	18	2	0.50	0.50	0.00	0.00	0.00

droGri2

ACTTAATT-GTTTTGATCAATGCTGGTCGACAGCCCTCCAAGAGCACGGTATTAAGTTCCTACGATTATTGCAAT--TTGCACGTAGGAACTCTATACCTCGCTAATGGTAAATAGACTTCGTTATC-------TT--TCGGTT--TTGAG-ATTT

Size

Hit Count

Total Norm

V109
Male body

12-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droAna3	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image

20-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droEug1	droBia1	droTak1	droEle1	droRho1	droFic1	droKik1	droAna3	droBip1	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image