dme-mir-274- Best orthologs

dme-mir-274	chr3L:11650018-11650117 +	Known_mirbase
[View on miRBase]	[View on UCSC Genome Browser {Cornell Mirror}]	antisense_to_intron

Legend:

   mature strand at position 11650037-11650058
   star strand at position 11650081-11650102
   mutations
   read mismatches

Notes: The rest of the droSim1 ortholog lies in a gap of the reference genome at position chr3L:11019633-11019768

20-way Fast Statistical Aligner (FSA) re-alignment

Visually pleasing best hits from LASTZ and MAF

Species	Coordinate	Source	Confidence	Alignment
dm3	chr3L:11650003-11650132 +		1	AGTT-------------TTGGTG--------ACGAATCC--------TG----TGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTAATTGTTTGGCCGC-----------------CAGGA---TTACTCGTTTTTGCGATCACAAATTATGAAATTGCAGCAAAA-CTCAACG---------A--------AATTG
droSim1	chr3L:11019619-11019632 +	LASTZ	1	AGTT-------------TTAGTG--------ACAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec1	super_0:3837012-3837141 +	LASTZ	1	AGTT-------------TTAGTG--------ACAAATCC--------TG----TGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTAATTGTTTGATCAC-----------------CAGGA---TTACTCGTTTTTGCGATCACAAATCATGAAATTGCAGCAAAA-CGCAACA---------A--------ATATA
droYak2	chr3L:11678621-11678750 +	LASTZ	1	TGAT-------------TTTATG--------CCGAATCC--------TG----TGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTAATTGTTTGGTCGC-----------------CAGGA---TTACTCGTTTTTGCGATCACAAATCATGAAATTGCAGCAAAA-CGCAACA---------A--------AGTCG
droEre2	scaffold_4784:11632283-11632412 +	LASTZ	1	TGAT-------------TTTATG--------GCCAATCC--------TG----TGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTAATTGTTTGGCCGC-----------------CAGGA---TTACTCGTTTTTGCGATCACAAATCATGAAATTGCAGCAAAA-CGCAACG---------A--------AGTCG
droEug1	scf7180000409711:3524239-3524377 +	LASTZ	4	GT--------------------T--------CCAAATCC--------TG----TGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTAATTGTATGGCCTAAAAGGAGCCGCT--CACCAGGA---TTACTCGTTTTTGCGATCACAAATCATGAAATTGCAGCAAAA-AGCAGCT---------A--------AATCA
droBia1	scf7180000302334:85647-85777 +	LASTZ	4	-----------------------------------ATCC--------TG----TGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTAATTGTCCGGCCCCCAG-GAGCCGCC--CCTCAGGA---TTACTCGTTTTTGCGATCACAAATCCTGAAATTGCAGCAAAG-AGCAGCA---------A--------AGTCC
droTak1	scf7180000414445:560331-560474 -	LASTZ	4	AGTT-------------CCGAAT--------CCGAATCC--------TG----TGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTAATTGTTCGGCCCCCAA-AAGCCGCC--CCGCAGGA---TTACTCGTTTTTGCGATCACAAATCCTGAAATTGCAGCAAAG-AGCAGCA---------A--------AATCA
droEle1	scf7180000490993:2151295-2151435 -	LASTZ	4	GCTTCTGGTGATCAAGA---GTT--------CCGAATCC--------TG----TGCTGCAGTTTCGTTTTGTGACCGACACTAACGGGTAATTGATTGGCCC----------------CGCAGGA---TTACTCGTTTCTGCGATCACAAATCATGAAATTGCAGCCAAA-AGCAACA---------A--------AATCG
droRho1	scf7180000778919:9010-9134 +	LASTZ	4	AGTT---------------------------CCAAATCC--------TG----TGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTAATTGTTCGGCTC----------------CGCAGGA---TTACTCGTTTTTGCGATCACAAATCATGAAATTGCAGCAAAA-AGCAGCA---------A--------AATCG
droFic1	scf7180000454113:3056710-3056847 -	LASTZ	4	AGTT-------------CC---------------TATCC--------TG----TGTTGTTGTTTCGTTTTGTGACCGACACTAACGGGTAATTGATCGGCCCCCAA-AAGCCGCCCACCGCAGGA---TTACTCGTTTTTGCGATCACAAATCCTGAAATTTCAGCAAAG-AGCAGCA------------------ATTCA
droKik1	scf7180000302391:1192138-1192294 -	LASTZ	4	GGAAATAGTA---AAAA---GTT--------CC-TATCCTTTTTTAACG----TGTTGCTGTTTCGCTTTGTGACCGACACTAACGGGTAATTGTTTGGCCTTCT--TAGCCGTT--CCGCTGGA---TTACTCGTTTTTGCGATCACAAATCCTGAAATTGCAGCTAAG-AGCAGCA---------T--------TCAAG
droAna3	scaffold_13337:5918600-5918728 +	LASTZ	1	GCCT-------------TTTTTT--------AAAAAACA------GAAA----TGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTATTTTACAGGACA----------------TACAGGA---TTACTCGTTTTTGCGATCACAAATCCTGAAATTGCAGCAAAA-AACAGCA---------A--------A----
droBip1	scf7180000396371:1256524-1256637 +	LASTZ	4	GTTT-------------TTGAAG--------ACAG------------AA----TGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTATTTTACAGGATT----------------TACAGGA---TTACTCGTTTTTGCGATCACAAATCCTGAAATTGCAGCAAAA-------------------------------
dp4	chrXR_group6:10040179-10040309 -	LASTZ	1	CCTG---GCAC------CTGGAA--------CCTGGTCC--------CG----TGCTGCAGTTTCATTTTGTGACCGACACTAACGGGTAATGGC-TGGCC------------------GCAGGA---CTACTCGTTTTTGCGATCACA-ATACTGAAATTGCAGCAACG-AGCAGCG---------A--------AACTG
droPer1	super_61:320241-320372 -	LASTZ	1	ACCT--GGCAC------CTGGGA--------CCTGGTCC--------CG----TGCTGCAGTTTCATTTTGTGACCGACACTAACGGGTAATGGC-TGGCC------------------GCAGGA---CTACTCGTTTTTGCGATCACA-ATACTGAAATTGCAGCAACG-AGCAGCG---------A--------AACTG
droWil1	scaffold_180949:2705123-2705289 -	LASTZ	1	TTTTGTG---A------T-TATT--------TTTAATAT--------CC----TGTTGCAGTTTCATTTTGTGACCGACACTAACGGGTAGTAAC-GGGTTAACA--AAGTCGTT--TTTCTGGCCTTTTACTCGTTTTTGCGATCACAAATTCTGAAATTGCAGCAAAAGATCAACGTATACAACAAACACATAAAATGA
droVir3	scaffold_13049:23860698-23860839 +	LASTZ	1	AATC-------------CCAATG--------TCGCATCCTG------TT----TGTTGCAGTTTCGGTTTGTGACCGACACTAACGGGTAGTTGG---GGCACC------TCGAATA-CGCTGTT---TTACTCGTTTTTGCGATCACAAATTCTGAAATTGCAACGAAA-AGCAACA---------A-----GAAAATTT
droMoj3	scaffold_6680:18485462-18485604 +	LASTZ	1	GAATCTGTTG-TCAAGT----------------GTATCC--------TG----TGTTGCAGTTTCGGTTTGTGACCGACACTAACGGGTAGTTGA--GGCATC-------TCGTATT-CGCTGTT-TTATACTCGTTTTTGCGATCACAAATTCTGAAATTGCAACGAAA-CGCAACG---------A--------AAATG
droGri2	scaffold_15110:13805592-13805748 -	LASTZ	1	AAAG----TGA--A---ATAGTGCAACGTATACGAGTCC--------TGTGCGTGTTGCAGTTTCGGTTTGTGACCGACACTAACGGGTAGTTAAAGGGCATCC------TCGCATTCTGCTGGC---TTACTCGTTTTTGCGATCACAAATTCTGAAATTGCAACGAAA-ATCAACA---------A--------AACCA

Legend

0- The ortholog is absent. A better synthenic sequence candidate could not be found.
1- Reads w/ good pileup on mature and star strand & folds into hairpin structure.
2- Reads w/ good pileup on mature and star strand BUT does not fold into hairpin structure.
3- Sporadic reads & folds into a hairpin structure.
4- No reads but folds into a hairpin structure.
5- Ortholog is confident but miRNA appears absent (no reads and does not fold into a hairpin)

Re-alignment after removal of non-confident orthologs

Species	Alignment
dm3	AGTT-------------TTGGTG--------ACGAATCC--------TG----TGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTAATTGTTTGGCCGC-----------------CAGGA---TTACTCGTTTTTGCGATCACAAATTATGAAATTGCAGCAAAA-CTCAACG---------A--------AATTG
droSim1	AGTT-------------TTAGTG--------ACAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec1	AGTT-------------TTAGTG--------ACAAATCC--------TG----TGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTAATTGTTTGATCAC-----------------CAGGA---TTACTCGTTTTTGCGATCACAAATCATGAAATTGCAGCAAAA-CGCAACA---------A--------ATATA
droYak2	TGAT-------------TTTATG--------CCGAATCC--------TG----TGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTAATTGTTTGGTCGC-----------------CAGGA---TTACTCGTTTTTGCGATCACAAATCATGAAATTGCAGCAAAA-CGCAACA---------A--------AGTCG
droEre2	TGAT-------------TTTATG--------GCCAATCC--------TG----TGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTAATTGTTTGGCCGC-----------------CAGGA---TTACTCGTTTTTGCGATCACAAATCATGAAATTGCAGCAAAA-CGCAACG---------A--------AGTCG
droEug1	GT--------------------T--------CCAAATCC--------TG----TGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTAATTGTATGGCCTAAAAGGAGCCGCT--CACCAGGA---TTACTCGTTTTTGCGATCACAAATCATGAAATTGCAGCAAAA-AGCAGCT---------A--------AATCA
droBia1	-----------------------------------ATCC--------TG----TGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTAATTGTCCGGCCCCCAG-GAGCCGCC--CCTCAGGA---TTACTCGTTTTTGCGATCACAAATCCTGAAATTGCAGCAAAG-AGCAGCA---------A--------AGTCC
droTak1	AGTT-------------CCGAAT--------CCGAATCC--------TG----TGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTAATTGTTCGGCCCCCAA-AAGCCGCC--CCGCAGGA---TTACTCGTTTTTGCGATCACAAATCCTGAAATTGCAGCAAAG-AGCAGCA---------A--------AATCA
droEle1	GCTTCTGGTGATCAAGA---GTT--------CCGAATCC--------TG----TGCTGCAGTTTCGTTTTGTGACCGACACTAACGGGTAATTGATTGGCCC----------------CGCAGGA---TTACTCGTTTCTGCGATCACAAATCATGAAATTGCAGCCAAA-AGCAACA---------A--------AATCG
droRho1	AGTT---------------------------CCAAATCC--------TG----TGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTAATTGTTCGGCTC----------------CGCAGGA---TTACTCGTTTTTGCGATCACAAATCATGAAATTGCAGCAAAA-AGCAGCA---------A--------AATCG
droFic1	AGTT-------------CC---------------TATCC--------TG----TGTTGTTGTTTCGTTTTGTGACCGACACTAACGGGTAATTGATCGGCCCCCAA-AAGCCGCCCACCGCAGGA---TTACTCGTTTTTGCGATCACAAATCCTGAAATTTCAGCAAAG-AGCAGCA------------------ATTCA
droKik1	GGAAATAGTA---AAAA---GTT--------CC-TATCCTTTTTTAACG----TGTTGCTGTTTCGCTTTGTGACCGACACTAACGGGTAATTGTTTGGCCTTCT--TAGCCGTT--CCGCTGGA---TTACTCGTTTTTGCGATCACAAATCCTGAAATTGCAGCTAAG-AGCAGCA---------T--------TCAAG
droAna3	GCCT-------------TTTTTT--------AAAAAACA------GAAA----TGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTATTTTACAGGACA----------------TACAGGA---TTACTCGTTTTTGCGATCACAAATCCTGAAATTGCAGCAAAA-AACAGCA---------A--------A----
droBip1	GTTT-------------TTGAAG--------ACAG------------AA----TGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTATTTTACAGGATT----------------TACAGGA---TTACTCGTTTTTGCGATCACAAATCCTGAAATTGCAGCAAAA-------------------------------
dp4	CCTG---GCAC------CTGGAA--------CCTGGTCC--------CG----TGCTGCAGTTTCATTTTGTGACCGACACTAACGGGTAATGGC-TGGCC------------------GCAGGA---CTACTCGTTTTTGCGATCACA-ATACTGAAATTGCAGCAACG-AGCAGCG---------A--------AACTG
droPer1	ACCT--GGCAC------CTGGGA--------CCTGGTCC--------CG----TGCTGCAGTTTCATTTTGTGACCGACACTAACGGGTAATGGC-TGGCC------------------GCAGGA---CTACTCGTTTTTGCGATCACA-ATACTGAAATTGCAGCAACG-AGCAGCG---------A--------AACTG
droWil1	TTTTGTG---A------T-TATT--------TTTAATAT--------CC----TGTTGCAGTTTCATTTTGTGACCGACACTAACGGGTAGTAAC-GGGTTAACA--AAGTCGTT--TTTCTGGCCTTTTACTCGTTTTTGCGATCACAAATTCTGAAATTGCAGCAAAAGATCAACGTATACAACAAACACATAAAATGA
droVir3	AATC-------------CCAATG--------TCGCATCCTG------TT----TGTTGCAGTTTCGGTTTGTGACCGACACTAACGGGTAGTTGG---GGCACC------TCGAATA-CGCTGTT---TTACTCGTTTTTGCGATCACAAATTCTGAAATTGCAACGAAA-AGCAACA---------A-----GAAAATTT
droMoj3	GAATCTGTTG-TCAAGT----------------GTATCC--------TG----TGTTGCAGTTTCGGTTTGTGACCGACACTAACGGGTAGTTGA--GGCATC-------TCGTATT-CGCTGTT-TTATACTCGTTTTTGCGATCACAAATTCTGAAATTGCAACGAAA-CGCAACG---------A--------AAATG
droGri2	AAAG----TGA--A---ATAGTGCAACGTATACGAGTCC--------TGTGCGTGTTGCAGTTTCGGTTTGTGACCGACACTAACGGGTAGTTAAAGGGCATCC------TCGCATTCTGCTGGC---TTACTCGTTTTTGCGATCACAAATTCTGAAATTGCAACGAAA-ATCAACA---------A--------AACCA

20-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droEug1	droBia1	droTak1	droEle1	droRho1	droFic1	droKik1	droAna3	droBip1	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image		None
UNAFold Image		None

Small RNA-seq read pileup

Species

Alignment

droSim1

AGTT-------------TTAGTG--------ACAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

V044
Embryo

M023
Head

M024
Male body

M025
Embryo

droSec1

AGTT-------------TTAGTG--------ACAAATCC--------TG----TGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTAATTGTTTGATCAC-----------------CAGGA---TTACTCGTTTTTGCGATCACAAATCATGAAATTGCAGCAAAA-CGCAACA---------A--------ATATA	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
...................................................................TTTGTGACCGACACTAACGGGT................................................................................................................	22	1	133987.00	11661.00	141.00	122185.00
...................................................................TTTGTGACCGACACTAACGGGTA...............................................................................................................	23	1	12655.00	666.00	22.00	11967.00
...................................................................TTTGTGACCGACACTAACGGGA................................................................................................................	22	1	1724.00	152.00	0.00	1572.00
...................................................................TTTGTGACCGACACTAACGGGTAT..............................................................................................................	24	1	1616.00	210.00	3.00	1403.00
...................................................................TTTGTGACCGACACTAACGGGTAA..............................................................................................................	24	1	1481.00	75.00	5.00	1401.00
...................................................................TTTGTGACCGACACTAACGGG.................................................................................................................	21	1	846.00	34.00	3.00	809.00
...................................................................TTTGTGACCGACACTAACGGGC................................................................................................................	22	1	653.00	52.00	0.00	601.00
...................................................................TTTGTGACCGACACTAACGG..................................................................................................................	20	1	589.00	25.00	1.00	563.00
...................................................................TTTGTGACCGACACTAACG...................................................................................................................	19	1	423.00	0.00	0.00	423.00
....................................................................TTGTGACCGACACTAACGGGT................................................................................................................	21	1	418.00	23.00	0.00	395.00
...................................................................TTTGTGACCGACACTAACTGGT................................................................................................................	22	1	320.00	65.00	1.00	254.00
...................................................................TTTGTGACCGACACTAACGGGTT...............................................................................................................	23	1	297.00	26.00	0.00	271.00
...................................................................TTTGTGACCGACACTAACGGT.................................................................................................................	21	1	265.00	6.00	1.00	258.00
...................................................................TTTGTGACCGACACTAACAGGT................................................................................................................	22	1	264.00	84.00	0.00	180.00
...................................................................TTTGTGACCGACACTAACGGGG................................................................................................................	22	1	262.00	19.00	0.00	243.00
...................................................................TTTGTGACCTACACTAACGGGT................................................................................................................	22	1	244.00	9.00	0.00	235.00
...................................................................TTTGTTACCGACACTAACGGGT................................................................................................................	22	1	228.00	13.00	0.00	215.00
...................................................................TTTGTGACCAACACTAACGGGT................................................................................................................	22	1	221.00	10.00	0.00	211.00
...................................................................TTTGTGACCGACACTAACCGGT................................................................................................................	22	1	188.00	97.00	0.00	91.00
...................................................................CTTGTGACCGACACTAACGGGT................................................................................................................	22	1	179.00	9.00	0.00	170.00
...................................................................TTTTTGACCGACACTAACGGGT................................................................................................................	22	1	166.00	8.00	0.00	158.00
...................................................................TTTGTGAACGACACTAACGGGT................................................................................................................	22	1	165.00	1.00	0.00	164.00
..................................................................CTTTGTGACCGACACTAACGGGT................................................................................................................	23	1	155.00	5.00	0.00	150.00
...................................................................TTTGTGACAGACACTAACGGGT................................................................................................................	22	1	143.00	3.00	0.00	140.00
...................................................................TTTGTGACTGACACTAACGGGT................................................................................................................	22	1	138.00	10.00	0.00	128.00
...................................................................TTTGTGGCCGACACTAACGGGT................................................................................................................	22	1	135.00	11.00	0.00	124.00
...................................................................TTTGTGACCGACACTAACGAGT................................................................................................................	22	1	130.00	9.00	0.00	121.00
...................................................................TTTGTGACCCACACTAACGGGT................................................................................................................	22	1	128.00	9.00	0.00	119.00
...................................................................TTTGTAACCGACACTAACGGGT................................................................................................................	22	1	127.00	7.00	0.00	120.00
...................................................................TTTGTGACCGACACTAAAGGGT................................................................................................................	22	1	121.00	4.00	0.00	117.00
...................................................................TTTGCGACCGACACTAACGGGT................................................................................................................	22	1	118.00	13.00	0.00	105.00
...................................................................TTTGTGACCGACACTAACGTGT................................................................................................................	22	1	112.00	7.00	0.00	105.00
...................................................................TTTGTCACCGACACTAACGGGT................................................................................................................	22	1	110.00	9.00	0.00	101.00
...................................................................TTTGTGACCGACACTAACGCGT................................................................................................................	22	1	108.00	10.00	0.00	98.00
...................................................................TTCGTGACCGACACTAACGGGT................................................................................................................	22	1	104.00	9.00	0.00	95.00
.....................................................................TTTGACCGACACTAACGGGT................................................................................................................	20	1	104.00	9.00	0.00	95.00
...................................................................TTTGTGACCGACACTAACGGGTTT..............................................................................................................	24	1	101.00	20.00	0.00	81.00
...................................................................TTTGTGACCGACACTAATGGGT................................................................................................................	22	1	101.00	9.00	0.00	92.00
...................................................................TTTATGACCGACACTAACGGGT................................................................................................................	22	1	100.00	5.00	0.00	95.00
...................................................................TTTGTGACCGACGCTAACGGGT................................................................................................................	22	1	100.00	9.00	0.00	91.00
...................................................................TTTGTGACCGCCACTAACGGGT................................................................................................................	22	1	99.00	5.00	0.00	94.00
...................................................................TTTGTGACCxACACTAACGGGT................................................................................................................	21	1	97.00	1.00	0.00	96.00
...................................................................TTTGTGACCGACACTAGCGGGT................................................................................................................	22	1	95.00	6.00	1.00	88.00
...................................................................TTTGTGACCGGCACTAACGGGT................................................................................................................	22	1	94.00	7.00	0.00	87.00
...................................................................TTTGTGACCGACACTACCGGGT................................................................................................................	22	1	93.00	5.00	0.00	88.00
...................................................................ATTGTGACCGACACTAACGGGT................................................................................................................	22	1	90.00	0.00	0.00	90.00
...................................................................TTTCTGACCGACACTAACGGGT................................................................................................................	22	1	90.00	11.00	0.00	79.00
...................................................................TCTGTGACCGACACTAACGGGT................................................................................................................	22	1	87.00	17.00	0.00	70.00
...................................................................................................................................CTCGTTTTTGCGATCACAAATC................................................	22	1	79.00	1.00	0.00	78.00
...................................................................TTTGTGATCGACACTAACGGGT................................................................................................................	22	1	78.00	15.00	0.00	63.00
...................................................................TATGTGACCGACACTAACGGGT................................................................................................................	22	1	74.00	1.00	0.00	73.00
...................................................................TTTGTGACCGACACTAACGGAT................................................................................................................	22	1	70.00	1.00	0.00	69.00
.....................................................................TGTGACCGACACTAACGGGT................................................................................................................	20	1	67.00	4.00	0.00	63.00
...................................................................TTTGTGACCGACACTAACGT..................................................................................................................	20	1	66.00	10.00	0.00	56.00
....................................................................TTTTGACCGACACTAACGGGT................................................................................................................	21	1	65.00	5.00	0.00	60.00
...................................................................TTTGTGACCGACACTAACGGCT................................................................................................................	22	1	65.00	6.00	0.00	59.00
...................................................................TTTGTGACCGATACTAACGGGT................................................................................................................	22	1	63.00	7.00	0.00	56.00
...................................................................TTTGTGACCGACACCAACGGGT................................................................................................................	22	1	60.00	11.00	0.00	49.00
...................................................................TTTGTGACCGACAATAACGGGT................................................................................................................	22	1	57.00	2.00	0.00	55.00
...................................................................GTTGTGACCGACACTAACGGGT................................................................................................................	22	1	57.00	1.00	0.00	56.00
...................................................................TTTGTGACCGACACTGACGGGT................................................................................................................	22	1	54.00	4.00	0.00	50.00
...................................................................TTTGTGACCGACACTAACGGTT................................................................................................................	22	1	53.00	3.00	0.00	50.00
...................................................................................................................................CTCGTTTTTGCGATCACAAATCA...............................................	23	1	52.00	0.00	1.00	51.00
...................................................................TTTGTGACCGACCCTAACGGGT................................................................................................................	22	1	51.00	5.00	0.00	46.00
...................................................................TTTGTGACCGACACTAACGGGTATT.............................................................................................................	25	1	50.00	6.00	0.00	44.00
...................................................................TTTGTGACCGACATTAACGGGT................................................................................................................	22	1	47.00	4.00	0.00	43.00
...................................................................TTTGAGACCGACACTAACGGGT................................................................................................................	22	1	47.00	1.00	0.00	46.00
...................................................................TTTGTGACCGACACTAACGGGAA...............................................................................................................	23	1	45.00	3.00	0.00	42.00
...................................................................TTTGTGACCGAAACTAACGGGT................................................................................................................	22	1	43.00	1.00	0.00	42.00
...................................................................TTTGTGACCTACACTAACGGGTA...............................................................................................................	23	1	42.00	0.00	0.00	42.00
...................................................................TTTGTGACCGACACTCACGGGT................................................................................................................	22	1	40.00	5.00	0.00	35.00
...................................................................TTTGTGCCCGACACTAACGGGT................................................................................................................	22	1	39.00	4.00	0.00	35.00
...................................................................TTTGTGACCGxxACTAACGGGT................................................................................................................	20	1	39.00	8.00	0.00	31.00
....................................................................TTGTGACCGACACTAACGGGTA...............................................................................................................	22	1	38.00	0.00	0.00	38.00
...................................................................TTTGTGACCGACACTATCGGGT................................................................................................................	22	1	35.00	1.00	0.00	34.00
...................................................................TTTGTGACCGACACTAACGGGTAAA.............................................................................................................	25	1	34.00	3.00	0.00	31.00
...................................................................TTTGTTACCGACACTAACGGGTA...............................................................................................................	23	1	33.00	0.00	0.00	33.00
...................................................................TTTGTxACCGACACTAACGGGT................................................................................................................	21	1	31.00	0.00	0.00	31.00
...................................................................TTTGTGACCGACACTAACGGGCA...............................................................................................................	23	1	31.00	1.00	0.00	30.00
...................................................................TTTGTGACAAACACTAACGGGT................................................................................................................	22	1	29.00	0.00	0.00	29.00
...................................................................TTTGTGACCGACACTAACGGGTAC..............................................................................................................	24	1	29.00	1.00	0.00	28.00
...................................................................TTTGTGACCGACACTAACGTGTA...............................................................................................................	23	1	28.00	1.00	0.00	27.00
...................................................................TTTGTGACCGTCACTAACGGGT................................................................................................................	22	1	28.00	4.00	0.00	24.00
...................................................................TTTGTGACCGAGACTAACGGGT................................................................................................................	22	1	28.00	4.00	0.00	24.00
...................................................................TTTGTGACCGACACTAAGGGGT................................................................................................................	22	1	28.00	1.00	0.00	27.00
...................................................................TTTGTGACCGACACTAACTGGTA...............................................................................................................	23	1	28.00	2.00	0.00	26.00
...................................................................TTTGTGACCGACACTAAAAGGT................................................................................................................	22	1	28.00	0.00	0.00	28.00
......................................................................TTGACCGACACTAACGGGT................................................................................................................	19	1	26.00	1.00	0.00	25.00
...................................................................TTTGTGACCxACACTAACGGGTA...............................................................................................................	22	1	24.00	0.00	0.00	24.00
...................................................................TTAGTGACCGACACTAACGGGT................................................................................................................	22	1	24.00	0.00	0.00	24.00
...................................................................TTTGTGACCCACACTAACGGGTA...............................................................................................................	23	1	24.00	0.00	0.00	24.00
...................................................................TTTGTGACCAACACTAACGGGTA...............................................................................................................	23	1	24.00	0.00	0.00	24.00
...................................................................TTTGCGACCGACACTAACGGGTA...............................................................................................................	23	1	23.00	3.00	0.00	20.00
..........................................................................................ATTGTTTGATCAC-----------------CAGGA---TTA......................................................................	21	1	23.00	5.00	0.00	18.00
...................................................................TTTGTGTCCGACACTAACGGGT................................................................................................................	22	1	22.00	1.00	0.00	21.00
...................................................................TTTGTGACTGACACTAACGGGTA...............................................................................................................	23	1	22.00	1.00	0.00	21.00
...................................................................TTTGTGACCGACACTxACGGGT................................................................................................................	21	1	22.00	4.00	0.00	18.00
...................................................................TTTGTGACCGACACTAACGGGTC...............................................................................................................	23	1	21.00	1.00	0.00	20.00
...................................................................TTTGTGAACGACACTAACGGGTA...............................................................................................................	23	1	20.00	0.00	0.00	20.00
..........................................................................................ATTGTTTGATCAC-----------------CAGGA---TT.......................................................................	20	1	20.00	2.00	0.00	18.00
...................................................................TTTGTGAGCGACACTAACGGGT................................................................................................................	22	1	20.00	1.00	0.00	19.00

droYak2

TGAT-------------TTTATG--------CCGAATCC--------TG----TGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTAATTGTTTGGTCGC-----------------CAGGA---TTACTCGTTTTTGCGATCACAAATCATGAAATTGCAGCAAAA-CGCAACA---------A--------AGTCG	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
...................................................................TTTGTGACCGACACTAACGGGT................................................................................................................	22	1	108772.00	0.00	38010.00	1284.00	58968.00	10510.00
...................................................................TTTGTGACCGACACTAACGGGTA...............................................................................................................	23	1	12757.00	1.00	4346.00	103.00	6507.00	1800.00
...................................................................TTTGTGACCGACACTAACGGGTAT..............................................................................................................	24	1	2800.00	0.00	1055.00	18.00	1637.00	90.00
...................................................................TTTGTGACCGACACTAACGGGC................................................................................................................	22	1	2713.00	0.00	209.00	10.00	1061.00	1433.00
...................................................................TTTGTGACCGACACTAACGGG.................................................................................................................	21	1	2197.00	0.00	467.00	10.00	657.00	1063.00
...................................................................TTTGTGACCGACACTAACGGGTAA..............................................................................................................	24	1	1653.00	0.00	614.00	6.00	1002.00	31.00
...................................................................TTTGTGACCGACACTAACGGGA................................................................................................................	22	1	1292.00	0.00	451.00	11.00	772.00	58.00
...................................................................TTTGTGACCGACACTAACGGGG................................................................................................................	22	1	1210.00	0.00	178.00	1.00	406.00	625.00
...................................................................TTTGTGACCGACACTACCGGGT................................................................................................................	22	1	1090.00	0.00	120.00	0.00	967.00	3.00
...................................................................TTTGTGACCGACACTCACGGGT................................................................................................................	22	1	1002.00	0.00	185.00	0.00	817.00	0.00
...................................................................TTTGTGACCGACACTAACG...................................................................................................................	19	1	741.00	0.00	293.00	0.00	376.00	72.00
...................................................................TTTGTGACCGCCACTAACGGGT................................................................................................................	22	1	603.00	0.00	85.00	0.00	515.00	3.00
...................................................................TTTGTGACCGACACTAACGTGT................................................................................................................	22	1	456.00	0.00	120.00	0.00	326.00	10.00
...................................................................TTTGTGACCGACACTAACGG..................................................................................................................	20	1	453.00	0.00	92.00	7.00	159.00	195.00
...................................................................TTTGTGACCGACACTAACGGTT................................................................................................................	22	1	366.00	0.00	45.00	1.00	320.00	0.00
...................................................................TTTGTGACCGACACTAACGGGTT...............................................................................................................	23	1	349.00	0.00	65.00	2.00	185.00	97.00
...................................................................TTTGTGACCGACCCTAACGGGT................................................................................................................	22	1	319.00	0.00	56.00	0.00	263.00	0.00
...................................................................TTTGGGACCGACACTAACGGGT................................................................................................................	22	1	299.00	0.00	50.00	1.00	242.00	6.00
...................................................................TTTGTGACCGACTCTAACGGGT................................................................................................................	22	1	290.00	0.00	61.00	0.00	229.00	0.00
...................................................................TTTGTGACCGACACTAACAGGT................................................................................................................	22	1	275.00	0.00	194.00	1.00	78.00	2.00
...................................................................TTTGTGACCGGCACTAACGGGT................................................................................................................	22	1	268.00	0.00	61.00	0.00	195.00	12.00
...................................................................TTTGTGACCGACACTAACTGGT................................................................................................................	22	1	261.00	0.00	112.00	0.00	148.00	1.00
....................................................................TTGTGACCGACACTAACGGGT................................................................................................................	21	1	231.00	0.00	67.00	4.00	138.00	22.00
...................................................................TTTGTGACCGACACTAACGGGTC...............................................................................................................	23	1	222.00	0.00	32.00	1.00	187.00	2.00
...................................................................TTTGTGACCGACGCTAACGGGT................................................................................................................	22	1	199.00	0.00	46.00	2.00	137.00	14.00
...................................................................TTTGTGACCTACACTAACGGGT................................................................................................................	22	1	197.00	0.00	56.00	1.00	129.00	11.00
...................................................................TTTGTGACCGACACTAACGGCT................................................................................................................	22	1	184.00	0.00	45.00	0.00	139.00	0.00
...................................................................CTTGTGACCGACACTAACGGGT................................................................................................................	22	1	182.00	0.00	61.00	1.00	112.00	8.00
...................................................................TTTGTGGCCGACACTAACGGGT................................................................................................................	22	1	170.00	0.00	56.00	1.00	99.00	14.00
...................................................................TTTGTGACTGACACTAACGGGT................................................................................................................	22	1	163.00	0.00	56.00	1.00	88.00	18.00
...................................................................TTTGTGACCGACAATAACGGGT................................................................................................................	22	1	160.00	0.00	65.00	0.00	95.00	0.00
...................................................................TTTGCGACCGACACTAACGGGT................................................................................................................	22	1	159.00	0.00	54.00	1.00	96.00	8.00
...................................................................TGTGTGACCGACACTAACGGGT................................................................................................................	22	1	156.00	0.00	39.00	0.00	117.00	0.00
...................................................................TTTGTGACCGACACTAACGCGT................................................................................................................	22	1	155.00	0.00	34.00	0.00	118.00	3.00
...................................................................TTGGTGACCGACACTAACGGGT................................................................................................................	22	1	152.00	0.00	52.00	0.00	100.00	0.00
...................................................................TTTGTGACCGTCACTAACGGGT................................................................................................................	22	1	151.00	0.00	20.00	0.00	131.00	0.00
...................................................................TTTGTGACCGACACTAGCGGGT................................................................................................................	22	1	148.00	0.00	44.00	1.00	98.00	5.00
...................................................................TTTGTGACCGACACTAACGGGTAG..............................................................................................................	24	1	143.00	0.00	38.00	0.00	62.00	43.00
...................................................................TTTGTGACCGACACTGACGGGT................................................................................................................	22	1	135.00	0.00	36.00	1.00	97.00	1.00
...................................................................TTTGTGACCGACACTAACGGGCA...............................................................................................................	23	1	121.00	0.00	29.00	1.00	86.00	5.00
...................................................................TTTGTGACCGACACTAACGGGTAC..............................................................................................................	24	1	116.00	0.00	32.00	0.00	62.00	22.00
...................................................................TTTGTGACCGACACTACCGGGTA...............................................................................................................	23	1	110.00	0.00	6.00	0.00	103.00	1.00
...................................................................TTTGTTACCGACACTAACGGGT................................................................................................................	22	1	109.00	0.00	45.00	3.00	60.00	1.00
...................................................................TTTGTGACCGACACTAACCGGT................................................................................................................	22	1	105.00	0.00	26.00	0.00	79.00	0.00
...................................................................TTTGTGACCGACACTAACGAGT................................................................................................................	22	1	104.00	0.00	69.00	1.00	33.00	1.00
...................................................................TTTGTGACCAACACTAACGGGT................................................................................................................	22	1	100.00	0.00	49.00	0.00	45.00	6.00
...................................................................TTTGAGACCGACACTAACGGGT................................................................................................................	22	1	99.00	0.00	12.00	0.00	84.00	3.00
...................................................................TTTGTGACAGACACTAACGGGT................................................................................................................	22	1	97.00	0.00	33.00	0.00	60.00	4.00
...................................................................TTTGTGACCCACACTAACGGGT................................................................................................................	22	1	92.00	0.00	27.00	0.00	65.00	0.00
...................................................................TTTGTGACCGACACTCACGGGTA...............................................................................................................	23	1	86.00	0.00	23.00	0.00	63.00	0.00
...................................................................TTTGTGAACGACACTAACGGGT................................................................................................................	22	1	85.00	0.00	21.00	0.00	61.00	3.00
...................................................................TTTATGACCGACACTAACGGGT................................................................................................................	22	1	85.00	0.00	40.00	0.00	37.00	8.00
...................................................................TTTGTGACCGACACCAACGGGT................................................................................................................	22	1	85.00	0.00	35.00	0.00	49.00	1.00
...................................................................TTTGTGACCGACACTAAAGGGT................................................................................................................	22	1	83.00	0.00	30.00	2.00	49.00	2.00
..................................................................CTTTGTGACCGACACTAACGGGT................................................................................................................	23	1	83.00	0.00	26.00	2.00	55.00	0.00
...................................................................TTTGTAACCGACACTAACGGGT................................................................................................................	22	1	80.00	0.00	34.00	0.00	42.00	4.00
...................................................................TTTGTGACCGACACTATCGGGT................................................................................................................	22	1	80.00	0.00	10.00	0.00	69.00	1.00
...................................................................TTTGTGACCGACACTAACGGGTATT.............................................................................................................	25	1	78.00	0.00	29.00	0.00	40.00	9.00
...................................................................TTCGTGACCGACACTAACGGGT................................................................................................................	22	1	76.00	0.00	23.00	1.00	51.00	1.00
...................................................................TTTGTGACCGACACTAACGGT.................................................................................................................	21	1	74.00	0.00	20.00	3.00	40.00	11.00
...................................................................TTTCTGACCGACACTAACGGGT................................................................................................................	22	1	73.00	0.00	25.00	0.00	47.00	1.00
...................................................................TTTGTGACCGACACTAATGGGT................................................................................................................	22	1	72.00	0.00	21.00	0.00	41.00	10.00
...................................................................TTTGTGATCGACACTAACGGGT................................................................................................................	22	1	72.00	0.00	21.00	0.00	38.00	13.00
...................................................................TTTGTCACCGACACTAACGGGT................................................................................................................	22	1	71.00	0.00	20.00	2.00	47.00	2.00
...................................................................TCTGTGACCGACACTAACGGGT................................................................................................................	22	1	69.00	0.00	30.00	2.00	37.00	0.00
...................................................................TTTGTGACCGACACTTACGGGT................................................................................................................	22	1	65.00	0.00	15.00	0.00	50.00	0.00
...................................................................TTTGTGACCGACACTAACGT..................................................................................................................	20	1	65.00	0.00	19.00	2.00	39.00	5.00
...................................................................TTTGTGACCGCCACTACCGGGT................................................................................................................	22	1	64.00	0.00	2.00	0.00	62.00	0.00
...................................................................TTTGTGACCGACACTAACGGGTTT..............................................................................................................	24	1	64.00	0.00	22.00	1.00	38.00	3.00
...................................................................TTTGTGACCGACACTAACGGGGA...............................................................................................................	23	1	64.00	0.00	19.00	0.00	38.00	7.00
...................................................................TTTGTGACCGATACTAACGGGT................................................................................................................	22	1	63.00	0.00	24.00	0.00	36.00	3.00
...................................................................TTTGTGTCCGACACTAACGGGT................................................................................................................	22	1	61.00	0.00	9.00	1.00	48.00	3.00
...................................................................TTTGTGACCGCCACTCACGGGT................................................................................................................	22	1	61.00	0.00	3.00	0.00	58.00	0.00
...................................................................TTTGTGCCCGACACTAACGGGT................................................................................................................	22	1	59.00	0.00	10.00	0.00	44.00	5.00
...................................................................TTTGTGACCGACACTCACGGGC................................................................................................................	22	1	58.00	0.00	6.00	0.00	52.00	0.00
...................................................................TTTGTGACCGACACTAACGGGTAAA.............................................................................................................	25	1	57.00	0.00	16.00	0.00	40.00	1.00
...................................................................TTTGTGACCGACACTAACGGAT................................................................................................................	22	1	57.00	0.00	33.00	1.00	22.00	1.00
...................................................................TTTGTGACCGACACTACCGGGC................................................................................................................	22	1	56.00	0.00	5.00	0.00	50.00	1.00
...................................................................TTTGTGACCGGCTCTAACGGGT................................................................................................................	22	1	55.00	0.00	11.00	0.00	44.00	0.00
...................................................................TTTGTGACCGACACGAACGGGT................................................................................................................	22	1	54.00	0.00	9.00	0.00	45.00	0.00
...................................................................TTTGTGACCGCCACTAACGGGTA...............................................................................................................	23	1	53.00	0.00	10.00	1.00	42.00	0.00
...................................................................TTTGTGACCGAAACTAACGGGT................................................................................................................	22	1	52.00	0.00	12.00	0.00	33.00	7.00
...................................................................TTTGTGACCGACATTAACGGGT................................................................................................................	22	1	52.00	0.00	14.00	0.00	38.00	0.00
...................................................................TTTGTGACCGACTCTAACGGGC................................................................................................................	22	1	52.00	0.00	8.00	0.00	44.00	0.00
...................................................................TTTGTGAGCGACACTAACGGGT................................................................................................................	22	1	51.00	0.00	16.00	0.00	34.00	1.00
...................................................................TTTGTGACCGACACTCCCGGGT................................................................................................................	22	1	50.00	0.00	4.00	0.00	46.00	0.00
...................................................................TTTGTGACCGACACTAACGGGTG...............................................................................................................	23	1	50.00	0.00	13.00	0.00	23.00	14.00
...................................................................ATTGTGACCGACACTAACGGGT................................................................................................................	22	1	49.00	0.00	12.00	0.00	37.00	0.00
...................................................................TTTGTGACCGACACTAACGGGTCT..............................................................................................................	24	1	48.00	0.00	7.00	0.00	41.00	0.00
...................................................................TTTTTGACCGACACTAACGGGT................................................................................................................	22	1	45.00	0.00	9.00	1.00	33.00	2.00
...................................................................TTTGTGACCGACACTAACGGGAA...............................................................................................................	23	1	42.00	0.00	5.00	0.00	26.00	11.00
...................................................................TTTGGGACCGACACTAACGGGC................................................................................................................	22	1	42.00	0.00	8.00	0.00	33.00	1.00
...................................................................TTTGTGACCGACACTAACGCGC................................................................................................................	22	1	36.00	0.00	9.00	0.00	27.00	0.00
...................................................................TTTGTGACCGACCCTCACGGGT................................................................................................................	22	1	35.00	0.00	3.00	0.00	32.00	0.00
...................................................................TTTGTGACCGCCACTAACGGGC................................................................................................................	22	1	35.00	0.00	2.00	0.00	33.00	0.00
...................................................................TTGGGGACCGACACTAACGGGT................................................................................................................	22	1	35.00	0.00	8.00	0.00	27.00	0.00
...................................................................TTTGGGACCGGCACTAACGGGT................................................................................................................	22	1	34.00	0.00	7.00	0.00	27.00	0.00
...................................................................TTTGTGACCGACACTAACGGTC................................................................................................................	22	1	34.00	0.00	4.00	0.00	30.00	0.00
...................................................................TTTGTGACCGACACTAACGTGTA...............................................................................................................	23	1	33.00	0.00	9.00	0.00	24.00	0.00
...................................................................TTTGGGACCGACACTAACGGGTA...............................................................................................................	23	1	33.00	0.00	8.00	0.00	23.00	2.00
...................................................................TTTGTGACCGACCCTACCGGGT................................................................................................................	22	1	33.00	0.00	2.00	0.00	31.00	0.00

droEre2

TGAT-------------TTTATG--------GCCAATCC--------TG----TGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTAATTGTTTGGCCGC-----------------CAGGA---TTACTCGTTTTTGCGATCACAAATCATGAAATTGCAGCAAAA-CGCAACG---------A--------AGTCG	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
...................................................................TTTGTGACCGACACTAACGGGT................................................................................................................	22	1	194738.00	4.00	54131.00	0.00	140603.00
...................................................................TTTGTGACCGACACTAACGGGTA...............................................................................................................	23	1	33740.00	0.00	12598.00	0.00	21142.00
...................................................................TTTGTGACCGACACTAACGGGTAA..............................................................................................................	24	1	6154.00	1.00	2696.00	0.00	3457.00
...................................................................TTTGTGACCGACACTAACTGGT................................................................................................................	22	1	4744.00	1.00	153.00	0.00	4590.00
...................................................................TTTGTGACCGACACTAACGGGTAT..............................................................................................................	24	1	3338.00	0.00	1364.00	0.00	1974.00
...................................................................TTTGTGACCGACACTAACGGG.................................................................................................................	21	1	2278.00	0.00	597.00	0.00	1681.00
...................................................................TTTGTGACCGACACTAACGGGA................................................................................................................	22	1	1663.00	0.00	494.00	0.00	1169.00
...................................................................TTTGTTACCGACACTAACGGGT................................................................................................................	22	1	1622.00	0.00	55.00	0.00	1567.00
...................................................................TTTGTGACCTACACTAACGGGT................................................................................................................	22	1	1448.00	0.00	84.00	0.00	1364.00
...................................................................TTTGTGACCGACACTAACGGGC................................................................................................................	22	1	1367.00	0.00	536.00	0.00	831.00
...................................................................TTTGTGACCGACACTAACGTGT................................................................................................................	22	1	1360.00	1.00	238.00	0.00	1121.00
...................................................................TTTGTGACCGACACTAACGG..................................................................................................................	20	1	1035.00	0.00	109.00	0.00	926.00
...................................................................TTTGTGACAGACACTAACGGGT................................................................................................................	22	1	980.00	0.00	41.00	0.00	939.00
...................................................................TTTGTGACCGACACTAACG...................................................................................................................	19	1	847.00	0.00	130.00	0.00	717.00
...................................................................TTTGTGACCGACACTACCGGGT................................................................................................................	22	1	749.00	0.00	650.00	0.00	99.00
...................................................................TTTGTGACCGACACTAACGGGG................................................................................................................	22	1	734.00	0.00	232.00	0.00	502.00
....................................................................TTGTGACCGACACTAACGGGT................................................................................................................	21	1	701.00	0.00	137.00	0.00	564.00
...................................................................TTTGTGACCGACACTAACTGGTA...............................................................................................................	23	1	627.00	0.00	28.00	0.00	599.00
...................................................................TTTGTGACCGACACTAACAGGT................................................................................................................	22	1	562.00	0.00	412.00	0.00	150.00
...................................................................TTTGTGACCGACACTAACGGGTT...............................................................................................................	23	1	560.00	0.00	204.00	0.00	356.00
...................................................................TTTTTGACCGACACTAACGGGT................................................................................................................	22	1	481.00	0.00	21.00	0.00	460.00
...................................................................TTTGTGACCGACAATAACGGGT................................................................................................................	22	1	431.00	0.00	60.00	0.00	371.00
...................................................................TTTGTGACCGACACTAAAGGGT................................................................................................................	22	1	419.00	0.00	58.00	0.00	361.00
...................................................................TTTGTGACCGACACTAACGGTT................................................................................................................	22	1	418.00	0.00	217.00	0.00	201.00
...................................................................TTTGTGACCGACACTAACGGGTC...............................................................................................................	23	1	416.00	0.00	159.00	0.00	257.00
...................................................................TTTGTGACCGACACTCACGGGT................................................................................................................	22	1	377.00	1.00	299.00	0.00	77.00
...................................................................TTTGTGACTGACACTAACGGGT................................................................................................................	22	1	354.00	0.00	120.00	0.00	234.00
...................................................................TTTGTGACCGCCACTAACGGGT................................................................................................................	22	1	330.00	0.00	184.00	0.00	146.00
...................................................................TTTGTGAACGACACTAACGGGT................................................................................................................	22	1	316.00	0.00	25.00	0.00	291.00
...................................................................TTTGTGACCGAAACTAACGGGT................................................................................................................	22	1	312.00	0.00	16.00	0.00	296.00
...................................................................TTTGTGACCGACACTAACGGT.................................................................................................................	21	1	307.00	0.00	17.00	0.00	290.00
...................................................................TTCGTGACCGACACTAACGGGT................................................................................................................	22	1	279.00	0.00	35.00	0.00	244.00
...................................................................TTTGTTACCGACACTAACGGGTA...............................................................................................................	23	1	272.00	0.00	16.00	0.00	256.00
...................................................................CTTGTGACCGACACTAACGGGT................................................................................................................	22	1	265.00	0.00	55.00	0.00	210.00
...................................................................TTTGTGACCTACACTAACGGGTA...............................................................................................................	23	1	257.00	0.00	26.00	0.00	231.00
...................................................................TTTGTGACCGACACTAACGTGTA...............................................................................................................	23	1	250.00	0.00	36.00	0.00	214.00
...................................................................TTTGCGACCGACACTAACGGGT................................................................................................................	22	1	236.00	0.00	55.00	0.00	181.00
...................................................................TTTGTGGCCGACACTAACGGGT................................................................................................................	22	1	235.00	0.00	65.00	0.00	170.00
...................................................................TTTGTGACCGACCCTAACGGGT................................................................................................................	22	1	227.00	0.00	139.00	0.00	88.00
..................................................................CTTTGTGACCGACACTAACGGGT................................................................................................................	23	1	215.00	0.00	46.00	0.00	169.00
...................................................................TTTGTGACCAACACTAACGGGT................................................................................................................	22	1	214.00	0.00	56.00	0.00	158.00
...................................................................TTTGTGACCGACGCTAACGGGT................................................................................................................	22	1	205.00	0.00	73.00	0.00	132.00
...................................................................TTTGTGACCGGCACTAACGGGT................................................................................................................	22	1	204.00	0.00	100.00	0.00	104.00
...................................................................TTTGTGACCGACACTAACGAGT................................................................................................................	22	1	198.00	0.00	123.00	0.00	75.00
...................................................................TTTGTGACAGACACTAACGGGTA...............................................................................................................	23	1	198.00	0.00	7.00	0.00	191.00
...................................................................TTTGTGACCGACACTAATGGGT................................................................................................................	22	1	174.00	0.00	30.00	0.00	144.00
...................................................................TTTGTGACCGACACTAACGGGTG...............................................................................................................	23	1	172.00	0.00	27.00	0.00	145.00
...................................................................TTTGTGACCGACACTAACGGGTAAA.............................................................................................................	25	1	168.00	0.00	46.00	0.00	122.00
...................................................................TTAGTGACCGACACTAACGGGT................................................................................................................	22	1	164.00	0.00	0.00	0.00	164.00
...................................................................TTTGTGACCGACACTAACCGGT................................................................................................................	22	1	163.00	0.00	55.00	0.00	108.00
...................................................................TTTGTGATCGACACTAACGGGT................................................................................................................	22	1	163.00	0.00	42.00	0.00	121.00
...................................................................TTTGTGACCGATACTAACGGGT................................................................................................................	22	1	161.00	0.00	32.00	0.00	129.00
...................................................................TTTGTGACCGACACTAGCGGGT................................................................................................................	22	1	161.00	0.00	58.00	0.00	103.00
...................................................................TCTGTGACCGACACTAACGGGT................................................................................................................	22	1	158.00	0.00	34.00	0.00	124.00
...................................................................TTGGTGACCGACACTAACGGGT................................................................................................................	22	1	158.00	0.00	45.00	0.00	113.00
...................................................................TTTGTAACCGACACTAACGGGT................................................................................................................	22	1	155.00	0.00	35.00	0.00	120.00
...................................................................TTTGTGACCGACACTGACGGGT................................................................................................................	22	1	148.00	0.00	63.00	0.00	85.00
...................................................................TTTGTGACCGACACTACCGGGTA...............................................................................................................	23	1	147.00	0.00	132.00	0.00	15.00
...................................................................TTTGTGACCGACACTAACGGGTAG..............................................................................................................	24	1	145.00	0.00	27.00	0.00	118.00
...................................................................TTTGTGACCGACACCAACGGGT................................................................................................................	22	1	144.00	0.00	31.00	0.00	113.00
...................................................................TTTGTGACCGACACTAACGGGCA...............................................................................................................	23	1	140.00	0.00	90.00	0.00	50.00
...................................................................TTTATGACCGACACTAACGGGT................................................................................................................	22	1	134.00	0.00	27.00	0.00	107.00
...................................................................TTTGTGACCGACACTAACGCGT................................................................................................................	22	1	124.00	0.00	66.00	0.00	58.00
...................................................................TTTGTGACCCACACTAACGGGT................................................................................................................	22	1	123.00	0.00	21.00	0.00	102.00
...................................................................TTTGTGACCGACACTAACGGCT................................................................................................................	22	1	121.00	0.00	45.00	0.00	76.00
...................................................................TTTGTGACCGACACTAACTGGTAA..............................................................................................................	24	1	120.00	0.00	14.00	0.00	106.00
...................................................................TTTGTGACCGACACTAACGGAT................................................................................................................	22	1	119.00	0.00	42.00	0.00	77.00
...................................................................TTTGTGACCGACACTAACGGGTAC..............................................................................................................	24	1	116.00	0.00	74.00	0.00	42.00
...................................................................TTTGTGACCGACTCTAACGGGT................................................................................................................	22	1	114.00	0.00	96.00	0.00	18.00
.....................................................................TTTGACCGACACTAACGGGT................................................................................................................	20	1	113.00	0.00	3.00	0.00	110.00
...................................................................TTTGTGACCGACATTAACGGGT................................................................................................................	22	1	108.00	0.00	27.00	0.00	81.00
...................................................................TTTGTGACCGACACTAACGGTTA...............................................................................................................	23	1	107.00	0.00	40.00	0.00	67.00
...................................................................TTTGTGACCGACACTAACGGGTATT.............................................................................................................	25	1	107.00	0.00	38.00	0.00	69.00
....................................................................TTGTGACCGACACTAACGGGTA...............................................................................................................	22	1	104.00	0.00	30.00	0.00	74.00
...................................................................TTTGTGACCxACACTAACGGGT................................................................................................................	21	1	103.00	0.00	5.00	0.00	98.00
...................................................................TTTGTGACCGACACTAACAGGTA...............................................................................................................	23	1	100.00	0.00	73.00	0.00	27.00
...................................................................TTTGTCACCGACACTAACGGGT................................................................................................................	22	1	100.00	0.00	18.00	0.00	82.00
...................................................................TTTCTGACCGACACTAACGGGT................................................................................................................	22	1	99.00	0.00	26.00	0.00	73.00
...................................................................TTTGTTACCGACACTAACTGGT................................................................................................................	22	1	97.00	0.00	0.00	0.00	97.00
...................................................................TTTGTGACTGACACTAACGGGTA...............................................................................................................	23	1	96.00	0.00	40.00	0.00	56.00
...................................................................TTTGTGACCGACACTAACGGGGA...............................................................................................................	23	1	93.00	0.00	50.00	0.00	43.00
.....................................................................TGTGACCGACACTAACGGGT................................................................................................................	20	1	90.00	0.00	15.00	0.00	75.00
...................................................................TTTGTGACCGACACTAACGT..................................................................................................................	20	1	87.00	0.00	10.00	0.00	77.00
...................................................................TTTGTGACCGACACTAACGGGAA...............................................................................................................	23	1	85.00	0.00	38.00	0.00	47.00
...................................................................TTTGTGACCGxxACTAACGGGT................................................................................................................	20	1	82.00	0.00	2.00	0.00	80.00
....................................................................TTTTGACCGACACTAACGGGT................................................................................................................	21	1	79.00	0.00	2.00	0.00	77.00
...................................................................TTTGTGAxCGACACTAACGGGT................................................................................................................	21	1	75.00	0.00	4.00	0.00	71.00
...................................................................TTTGTGACCGACACTAACGGGTTT..............................................................................................................	24	1	73.00	0.00	10.00	0.00	63.00
...................................................................TTTGTGACCGTCACTAACGGGT................................................................................................................	22	1	71.00	0.00	41.00	0.00	30.00
...................................................................TTTGAGACCGACACTAACGGGT................................................................................................................	22	1	71.00	0.00	40.00	0.00	31.00
...................................................................TTTGTGACCGACACTAACGGGTAAT.............................................................................................................	25	1	71.00	1.00	29.00	0.00	41.00
...................................................................TTTGTGACCGCCACTAACGGGTA...............................................................................................................	23	1	68.00	0.00	47.00	0.00	21.00
...................................................................TTTGTGACCGACACTAACGGGTCA..............................................................................................................	24	1	68.00	0.00	28.00	0.00	40.00
...................................................................................................................................CTCGTTTTTGCGATCACAAATC................................................	22	1	65.00	0.00	7.00	0.00	58.00
...................................................................TTTGCGACCGACACTAACGGGTA...............................................................................................................	23	1	63.00	0.00	22.00	0.00	41.00
...................................................................TGTGTGACCGACACTAACGGGT................................................................................................................	22	1	61.00	0.00	51.00	0.00	10.00
...................................................................TTTGTGATCGACACTAACGGGTA...............................................................................................................	23	1	60.00	0.00	7.00	0.00	53.00
...................................................................TTTGTGACCGACACTAACGGGTTA..............................................................................................................	24	1	59.00	0.00	10.00	0.00	49.00
...................................................................TTTGTGCCCGACACTAACGGGT................................................................................................................	22	1	59.00	0.00	11.00	0.00	48.00
...................................................................TTTTTGACCGACACTAACGGGTA...............................................................................................................	23	1	58.00	0.00	3.00	0.00	55.00
...................................................................TTTGTGACCGACACTCACGGGTA...............................................................................................................	23	1	58.00	0.00	45.00	0.00	13.00

droEug1

GT--------------------T--------CCAAATCC--------TG----TGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTAATTGTATGGCCTAAAAGGAGCCGCT--CACCAGGA---TTACTCGTTTTTGCGATCACAAATCATGAAATTGCAGCAAAA-AGCAGCT---------A--------AATCA

Size

Hit Count

Total Norm

droBia1

-----------------------------------ATCC--------TG----TGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTAATTGTCCGGCCCCCAG-GAGCCGCC--CCTCAGGA---TTACTCGTTTTTGCGATCACAAATCCTGAAATTGCAGCAAAG-AGCAGCA---------A--------AGTCC

Size

Hit Count

Total Norm

droTak1

AGTT-------------CCGAAT--------CCGAATCC--------TG----TGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTAATTGTTCGGCCCCCAA-AAGCCGCC--CCGCAGGA---TTACTCGTTTTTGCGATCACAAATCCTGAAATTGCAGCAAAG-AGCAGCA---------A--------AATCA

Size

Hit Count

Total Norm

droEle1

GCTTCTGGTGATCAAGA---GTT--------CCGAATCC--------TG----TGCTGCAGTTTCGTTTTGTGACCGACACTAACGGGTAATTGATTGGCCC----------------CGCAGGA---TTACTCGTTTCTGCGATCACAAATCATGAAATTGCAGCCAAA-AGCAACA---------A--------AATCG

Size

Hit Count

Total Norm

droRho1

AGTT---------------------------CCAAATCC--------TG----TGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTAATTGTTCGGCTC----------------CGCAGGA---TTACTCGTTTTTGCGATCACAAATCATGAAATTGCAGCAAAA-AGCAGCA---------A--------AATCG

Size

Hit Count

Total Norm

droFic1

AGTT-------------CC---------------TATCC--------TG----TGTTGTTGTTTCGTTTTGTGACCGACACTAACGGGTAATTGATCGGCCCCCAA-AAGCCGCCCACCGCAGGA---TTACTCGTTTTTGCGATCACAAATCCTGAAATTTCAGCAAAG-AGCAGCA------------------ATTCA

Size

Hit Count

Total Norm

droKik1

GGAAATAGTA---AAAA---GTT--------CC-TATCCTTTTTTAACG----TGTTGCTGTTTCGCTTTGTGACCGACACTAACGGGTAATTGTTTGGCCTTCT--TAGCCGTT--CCGCTGGA---TTACTCGTTTTTGCGATCACAAATCCTGAAATTGCAGCTAAG-AGCAGCA---------T--------TCAAG

Size

Hit Count

Total Norm

droAna3

GCCT-------------TTTTTT--------AAAAAACA------GAAA----TGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTATTTTACAGGACA----------------TACAGGA---TTACTCGTTTTTGCGATCACAAATCCTGAAATTGCAGCAAAA-AACAGCA---------A--------A----	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
...................................................................TTTGTGACCGACACTAACGGGT................................................................................................................	22	1	175454.00	3515.00	127525.00	44408.00	6.00
...................................................................TTTGTGACCGACACTAACGGGTA...............................................................................................................	23	1	11239.00	169.00	7680.00	3390.00	0.00
...................................................................TTTGTGACCGACACTAACGG..................................................................................................................	20	1	2651.00	26.00	2236.00	389.00	0.00
...................................................................TTTGTGACCGACACTAACGGGA................................................................................................................	22	1	2175.00	47.00	1468.00	660.00	0.00
...................................................................TTTGTGACCGACACTAACGGG.................................................................................................................	21	1	2106.00	41.00	1399.00	666.00	0.00
...................................................................TTTGTGACCGACACTAACGGGC................................................................................................................	22	1	1567.00	7.00	433.00	1127.00	0.00
...................................................................TTTGTGACCGACACTAACGGGTAA..............................................................................................................	24	1	1381.00	16.00	999.00	366.00	0.00
...................................................................TTTGTGACCGACACTAACGGT.................................................................................................................	21	1	1230.00	4.00	1137.00	89.00	0.00
...................................................................TTTGTGACCGACACTAACGGGTAT..............................................................................................................	24	1	1196.00	30.00	606.00	559.00	1.00
...................................................................TTTGTGACCGACACTAACG...................................................................................................................	19	1	1125.00	4.00	515.00	606.00	0.00
...................................................................TTTGTGACCGACACTAACTGGT................................................................................................................	22	1	1124.00	16.00	1028.00	80.00	0.00
...................................................................TTGGTGACCGACACTAACGGGT................................................................................................................	22	1	988.00	0.00	857.00	131.00	0.00
...................................................................TTTGTGACCGACACTAACGGAT................................................................................................................	22	1	869.00	42.00	797.00	30.00	0.00
...................................................................TTTGTGACCGACACTAACGGGG................................................................................................................	22	1	686.00	4.00	270.00	412.00	0.00
...................................................................TTTGTGACCGACACTAACGGGTT...............................................................................................................	23	1	673.00	7.00	398.00	268.00	0.00
...................................................................TTTGTGACCGACACTAACGTGT................................................................................................................	22	1	649.00	10.00	518.00	121.00	0.00
...................................................................TTTGTTACCGACACTAACGGGT................................................................................................................	22	1	610.00	3.00	551.00	56.00	0.00
...................................................................TTTGTGACCGACACTAACGGCT................................................................................................................	22	1	607.00	23.00	422.00	162.00	0.00
...................................................................TTTGTGACCTACACTAACGGGT................................................................................................................	22	1	541.00	3.00	462.00	76.00	0.00
...................................................................TTTGTGACAGACACTAACGGGT................................................................................................................	22	1	508.00	10.00	323.00	175.00	0.00
...................................................................TTTGTGACCGACACTAACGT..................................................................................................................	20	1	428.00	34.00	295.00	99.00	0.00
...................................................................TTTGTGACCGACACTAACGGTT................................................................................................................	22	1	402.00	22.00	301.00	79.00	0.00
...................................................................TTTGTGACCGACACTAACGGGTTT..............................................................................................................	24	1	375.00	7.00	225.00	143.00	0.00
...................................................................TTTGGGACCGACACTAACGGGT................................................................................................................	22	1	345.00	1.00	8.00	336.00	0.00
...................................................................TTTGTGACTGACACTAACGGGT................................................................................................................	22	1	345.00	3.00	228.00	114.00	0.00
...................................................................TTTGCGACCGACACTAACGGGT................................................................................................................	22	1	290.00	4.00	140.00	146.00	0.00
...................................................................TTTGTGACCGACACTACCGGGT................................................................................................................	22	1	271.00	2.00	30.00	239.00	0.00
...................................................................CTTGTGACCGACACTAACGGGT................................................................................................................	22	1	271.00	2.00	186.00	83.00	0.00
...................................................................TTTGTGACCGACGCTAACGGGT................................................................................................................	22	1	249.00	9.00	128.00	112.00	0.00
...................................................................TTTGTGACCGACACTAACAGGT................................................................................................................	22	1	236.00	3.00	160.00	73.00	0.00
...................................................................................................................................CTCGTTTTTGCGATCACAAATC................................................	22	1	230.00	3.00	219.00	8.00	0.00
....................................................................TTGTGACCGACACTAACGGGT................................................................................................................	21	1	213.00	8.00	105.00	100.00	0.00
...................................................................TTTGTGGCCGACACTAACGGGT................................................................................................................	22	1	207.00	1.00	147.00	59.00	0.00
...................................................................TTTGTGACCGGCACTAACGGGT................................................................................................................	22	1	204.00	4.00	105.00	95.00	0.00
...................................................................TTTGTGACCGACACTAGCGGGT................................................................................................................	22	1	201.00	4.00	117.00	80.00	0.00
...................................................................TTTGTGATCGACACTAACGGGT................................................................................................................	22	1	197.00	5.00	152.00	40.00	0.00
...................................................................TTTGTGACCGACACTAACGCGT................................................................................................................	22	1	184.00	1.00	53.00	130.00	0.00
...................................................................TTTGTGACCGCCACTAACGGGT................................................................................................................	22	1	183.00	6.00	41.00	136.00	0.00
...................................................................TTTGTGACCGACACTGACGGGT................................................................................................................	22	1	180.00	8.00	103.00	69.00	0.00
...................................................................TTTGTGACCGACACTAATGGGT................................................................................................................	22	1	179.00	1.00	126.00	52.00	0.00
...................................................................TTTGTGACCGACACTCACGGGT................................................................................................................	22	1	178.00	7.00	25.00	146.00	0.00
...................................................................TTCGTGACCGACACTAACGGGT................................................................................................................	22	1	175.00	5.00	132.00	38.00	0.00
...................................................................TTTGTGACCGACACTAACGAGT................................................................................................................	22	1	173.00	3.00	126.00	44.00	0.00
...................................................................TTTGTGACCGACAATAACGGGT................................................................................................................	22	1	171.00	5.00	73.00	93.00	0.00
...................................................................TTTGTGACCGACACTAACCGGT................................................................................................................	22	1	164.00	0.00	46.00	118.00	0.00
...................................................................TTTGTGACCGATACTAACGGGT................................................................................................................	22	1	161.00	9.00	103.00	49.00	0.00
...................................................................TTTGTGAACGACACTAACGGGT................................................................................................................	22	1	159.00	2.00	78.00	79.00	0.00
...................................................................TTTGTGACCGAAACTAACGGGT................................................................................................................	22	1	157.00	12.00	108.00	37.00	0.00
...................................................................TGTGTGACCGACACTAACGGGT................................................................................................................	22	1	156.00	12.00	5.00	139.00	0.00
...................................................................TTTGTGACCAACACTAACGGGT................................................................................................................	22	1	153.00	2.00	103.00	48.00	0.00
...................................................................TTTGAGACCGACACTAACGGGT................................................................................................................	22	1	152.00	1.00	24.00	127.00	0.00
...................................................................TCTGTGACCGACACTAACGGGT................................................................................................................	22	1	146.00	8.00	96.00	42.00	0.00
...................................................................TTTGTGACCGACTCTAACGGGT................................................................................................................	22	1	141.00	4.00	16.00	121.00	0.00
...................................................................TTTGTGACCGACCCTAACGGGT................................................................................................................	22	1	129.00	9.00	21.00	99.00	0.00
...................................................................TTTGTGACCGACACCAACGGGT................................................................................................................	22	1	129.00	4.00	79.00	46.00	0.00
...................................................................TTTGTCACCGACACTAACGGGT................................................................................................................	22	1	127.00	1.00	60.00	66.00	0.00
...................................................................TTTGTGACCGACACTAAAGGGT................................................................................................................	22	1	124.00	3.00	70.00	51.00	0.00
...................................................................TTTGTGACCGTCACTAACGGGT................................................................................................................	22	1	116.00	2.00	26.00	88.00	0.00
...................................................................TTTTTGACCGACACTAACGGGT................................................................................................................	22	1	110.00	5.00	80.00	25.00	0.00
...................................................................TTTGTAACCGACACTAACGGGT................................................................................................................	22	1	106.00	2.00	71.00	33.00	0.00
...................................................................TTTATGACCGACACTAACGGGT................................................................................................................	22	1	102.00	4.00	65.00	33.00	0.00
...................................................................TTTGTGACCCACACTAACGGGT................................................................................................................	22	1	101.00	5.00	45.00	51.00	0.00
...................................................................TTTGTGACCGACACTATCGGGT................................................................................................................	22	1	100.00	0.00	37.00	63.00	0.00
...................................................................GTTGTGACCGACACTAACGGGT................................................................................................................	22	1	98.00	1.00	15.00	82.00	0.00
...................................................................TTTGTGACCGAGACTAACGGGT................................................................................................................	22	1	92.00	23.00	35.00	34.00	0.00
...................................................................TTTGTGACCGACATTAACGGGT................................................................................................................	22	1	88.00	3.00	43.00	42.00	0.00
..................................................................CTTTGTGACCGACACTAACGGGT................................................................................................................	23	1	82.00	3.00	24.00	55.00	0.00
...................................................................TTTGTGACCGACACTAACGGGTATT.............................................................................................................	25	1	82.00	4.00	50.00	28.00	0.00
...................................................................ATTGTGACCGACACTAACGGGT................................................................................................................	22	1	82.00	1.00	19.00	62.00	0.00
...................................................................TTTGTGACCGACACTAACGGGTC...............................................................................................................	23	1	79.00	0.00	21.00	58.00	0.00
...................................................................TTGGTGACCGACACTAACGGGTA...............................................................................................................	23	1	74.00	0.00	67.00	7.00	0.00
...................................................................TTTGTGACCGACACTAACGGA.................................................................................................................	21	1	70.00	0.00	48.00	22.00	0.00
...................................................................TTTGTGACCGACACTAACGGGCA...............................................................................................................	23	1	70.00	1.00	21.00	48.00	0.00
...................................................................TTTCTGACCGACACTAACGGGT................................................................................................................	22	1	70.00	2.00	19.00	49.00	0.00
...................................................................TTTGTGACCGxxACTAACGGGT................................................................................................................	20	1	69.00	1.00	67.00	1.00	0.00
...................................................................TTTGTGAGCGACACTAACGGGT................................................................................................................	22	1	69.00	0.00	28.00	41.00	0.00
...................................................................TTTGTGACGGACACTAACGGGT................................................................................................................	22	1	69.00	1.00	40.00	28.00	0.00
...................................................................TTTGTGACCGACACGAACGGGT................................................................................................................	22	1	66.00	0.00	8.00	58.00	0.00
.....................................................................TTTGACCGACACTAACGGGT................................................................................................................	20	1	66.00	5.00	61.00	0.00	0.00
...................................................................TTTGTGTCCGACACTAACGGGT................................................................................................................	22	1	62.00	0.00	37.00	25.00	0.00
...................................................................TTTGTGACCGACACTAACGGGTAG..............................................................................................................	24	1	61.00	0.00	48.00	13.00	0.00
...................................................................TTTGTGACCGACACTAAGGGGT................................................................................................................	22	1	58.00	1.00	34.00	23.00	0.00
...................................................................TTTGTGACCGACACTAACGGATA...............................................................................................................	23	1	56.00	2.00	50.00	4.00	0.00
...................................................................TTTGTGACCGACACTAACTGGTA...............................................................................................................	23	1	55.00	0.00	51.00	4.00	0.00
...................................................................TTTGTGACCxACACTAACGGGT................................................................................................................	21	1	54.00	2.00	49.00	3.00	0.00
...................................................................TTTGTGACCGACACTAACGTGTA...............................................................................................................	23	1	50.00	0.00	40.00	10.00	0.00
...................................................................................................................................CTCGTTTTTGCGATCACAAATCCT..............................................	24	1	48.00	2.00	36.00	10.00	0.00
...................................................................................................................................CTCGTTTTTGCGATCACAAATCC...............................................	23	1	48.00	0.00	41.00	7.00	0.00
...................................................................TTTGGGACCGACACTAACGGGC................................................................................................................	22	1	47.00	0.00	0.00	47.00	0.00
...................................................................TTTGTGACCGACACTTACGGGT................................................................................................................	22	1	44.00	4.00	9.00	31.00	0.00
...................................................................TTTGTGACCTACACTAACGGGTA...............................................................................................................	23	1	44.00	3.00	36.00	5.00	0.00
...................................................................TATGTGACCGACACTAACGGGT................................................................................................................	22	1	42.00	6.00	9.00	27.00	0.00
...................................................................TTTGTTACCGACACTAACGGGTA...............................................................................................................	23	1	42.00	0.00	37.00	5.00	0.00
...................................................................TTTGTGACCGACACTAACGGTTA...............................................................................................................	23	1	41.00	3.00	29.00	9.00	0.00
...................................................................TTTGTGAxCGACACTAACGGGT................................................................................................................	21	1	37.00	0.00	35.00	2.00	0.00
...................................................................TTTGTGCCCGACACTAACGGGT................................................................................................................	22	1	37.00	1.00	16.00	20.00	0.00
...................................................................TTTGTGACCGACACTAACGGGAA...............................................................................................................	23	1	36.00	0.00	17.00	19.00	0.00
...................................................................TTTGTGACCGACACTAACGGCTA...............................................................................................................	23	1	35.00	2.00	25.00	8.00	0.00
...................................................................TTTGGGACCGACACTAACGGGG................................................................................................................	22	1	33.00	0.00	0.00	33.00	0.00
.....................................................................TGTGACCGACACTAACGGGT................................................................................................................	20	1	33.00	0.00	19.00	14.00	0.00
...................................................................TTTGTGACCGACACTACCGGGC................................................................................................................	22	1	32.00	0.00	0.00	32.00	0.00

droBip1

GTTT-------------TTGAAG--------ACAG------------AA----TGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTATTTTACAGGATT----------------TACAGGA---TTACTCGTTTTTGCGATCACAAATCCTGAAATTGCAGCAAAA-------------------------------

Size

Hit Count

Total Norm

dp4

CCTG---GCAC------CTGGAA--------CCTGGTCC--------CG----TGCTGCAGTTTCATTTTGTGACCGACACTAACGGGTAATGGC-TGGCC------------------GCAGGA---CTACTCGTTTTTGCGATCACA-ATACTGAAATTGCAGCAACG-AGCAGCG---------A--------AACTG	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
...................................................................TTTGTGACCGACACTAACGGGT................................................................................................................	22	1	45012.00	3297.00	8.00	41522.00	185.00
...................................................................TTTGTGACCGACACTAACGGGTA...............................................................................................................	23	1	6009.00	130.00	1.00	5856.00	22.00
...................................................................TTTGTGACCGACACTAACGGG.................................................................................................................	21	1	994.00	40.00	0.00	937.00	17.00
...................................................................TTTGTGACCGACACTAACGGGTAA..............................................................................................................	24	1	700.00	15.00	0.00	685.00	0.00
...................................................................TTTGTGACCGACACTAACGGGC................................................................................................................	22	1	666.00	17.00	0.00	641.00	8.00
...................................................................TTTGTGACCGACACTAACG...................................................................................................................	19	1	542.00	0.00	0.00	542.00	0.00
...................................................................TTTGTGACCGACACTAACGGGA................................................................................................................	22	1	483.00	20.00	0.00	462.00	1.00
...................................................................TTTGTGACCGACACTAACGG..................................................................................................................	20	1	380.00	19.00	0.00	354.00	7.00
....................................................................TTGTGACCGACACTAACGGGT................................................................................................................	21	1	333.00	33.00	0.00	299.00	1.00
...................................................................TTTGTGACCGACACTAACGGGTAT..............................................................................................................	24	1	286.00	18.00	0.00	268.00	0.00
...................................................................TTTGTGACCGACACTACCGGGT................................................................................................................	22	1	228.00	1.00	0.00	227.00	0.00
...................................................................TTTGTGACCGACACTAACGGGTT...............................................................................................................	23	1	204.00	1.00	0.00	198.00	5.00
...................................................................TTTGTGACCGACACTAACGGGG................................................................................................................	22	1	168.00	1.00	1.00	166.00	0.00
...................................................................TTCGTGACCGACACTAACGGGT................................................................................................................	22	1	138.00	6.00	0.00	131.00	1.00
...................................................................TTAGTGACCGACACTAACGGGT................................................................................................................	22	1	121.00	0.00	0.00	121.00	0.00
...................................................................TTTGTGACCGACACTAACAGGT................................................................................................................	22	1	109.00	2.00	0.00	107.00	0.00
...................................................................TTGGTGACCGACACTAACGGGT................................................................................................................	22	1	92.00	1.00	0.00	91.00	0.00
...................................................................TTTGGGACCGACACTAACGGGT................................................................................................................	22	1	71.00	1.00	0.00	69.00	1.00
...................................................................TTTGTGACTGACACTAACGGGT................................................................................................................	22	1	69.00	2.00	0.00	67.00	0.00
...................................................................TTTGCGACCGACACTAACGGGT................................................................................................................	22	1	69.00	4.00	0.00	64.00	1.00
...................................................................TTTGTGACCGACACTAACGGGCA...............................................................................................................	23	1	67.00	0.00	0.00	67.00	0.00
...................................................................TTTGTGACCGACACTAACGT..................................................................................................................	20	1	67.00	9.00	0.00	57.00	1.00
...................................................................TTTGTGACCGACACTCACGGGT................................................................................................................	22	1	65.00	0.00	0.00	65.00	0.00
...................................................................TTTGTGACCGACACTAACGGCT................................................................................................................	22	1	65.00	0.00	0.00	65.00	0.00
...................................................................TGTGTGACCGACACTAACGGGT................................................................................................................	22	1	64.00	0.00	0.00	64.00	0.00
...................................................................TTTGTGGCCGACACTAACGGGT................................................................................................................	22	1	63.00	4.00	0.00	59.00	0.00
...................................................................TTTGTGACCGACACTAACGGGTC...............................................................................................................	23	1	62.00	3.00	0.00	57.00	2.00
...................................................................TTTGTGACCGACACTAGCGGGT................................................................................................................	22	1	58.00	5.00	0.00	53.00	0.00
...................................................................TTTGTGACCGACACTAACGCGT................................................................................................................	22	1	58.00	1.00	0.00	57.00	0.00
...................................................................TTTGTGACAGACACTAACGGGT................................................................................................................	22	1	57.00	1.00	0.00	56.00	0.00
...................................................................CTTGTGACCGACACTAACGGGT................................................................................................................	22	1	56.00	6.00	0.00	50.00	0.00
...................................................................TTTGTGACCGACACTAACGAGT................................................................................................................	22	1	54.00	0.00	0.00	54.00	0.00
...................................................................TTTGAGACCGACACTAACGGGT................................................................................................................	22	1	53.00	0.00	0.00	53.00	0.00
...................................................................TTTGTGACCGACACTAACGTGT................................................................................................................	22	1	52.00	0.00	0.00	51.00	1.00
...................................................................TTTGTGACCGCCACTAACGGGT................................................................................................................	22	1	52.00	1.00	0.00	51.00	0.00
...................................................................TTTGTGACCGACAATAACGGGT................................................................................................................	22	1	52.00	0.00	0.00	52.00	0.00
...................................................................TTTGTGACCGACCCTAACGGGT................................................................................................................	22	1	48.00	1.00	0.00	47.00	0.00
...................................................................TTTGTGACCGACGCTAACGGGT................................................................................................................	22	1	48.00	0.00	0.00	47.00	1.00
....................................................................TTGTGACCGACACTAACGGGTA...............................................................................................................	22	1	47.00	3.00	0.00	44.00	0.00
...................................................................................................................................CTCGTTTTTGCGATCACA-ATACT..............................................	23	1	44.00	2.00	0.00	42.00	0.00
...................................................................TTTGTGACCGACACTAACCGGT................................................................................................................	22	1	43.00	0.00	0.00	43.00	0.00
...................................................................TTTGTGACCGACACTAAAGGGT................................................................................................................	22	1	43.00	2.00	0.00	41.00	0.00
...................................................................TTTGTGACCGACACTAATGGGT................................................................................................................	22	1	40.00	0.00	0.00	40.00	0.00
...................................................................TTTGTGACCGACACTAACGGT.................................................................................................................	21	1	39.00	4.00	0.00	35.00	0.00
...................................................................TCTGTGACCGACACTAACGGGT................................................................................................................	22	1	39.00	3.00	0.00	36.00	0.00
...................................................................TTTGTGACCGACACTGACGGGT................................................................................................................	22	1	38.00	1.00	0.00	37.00	0.00
...................................................................TTTGTGACCGTCACTAACGGGT................................................................................................................	22	1	36.00	2.00	0.00	34.00	0.00
...................................................................TTTGTGACCGACACCAACGGGT................................................................................................................	22	1	35.00	1.00	0.00	34.00	0.00
...................................................................TTTATGACCGACACTAACGGGT................................................................................................................	22	1	35.00	0.00	0.00	35.00	0.00
...................................................................TTTGTGACCGGCACTAACGGGT................................................................................................................	22	1	32.00	3.00	0.00	29.00	0.00
...................................................................TTTGTGACCGACTCTAACGGGT................................................................................................................	22	1	32.00	0.00	0.00	32.00	0.00
...................................................................TTTGTGACCGACACTAACGGTT................................................................................................................	22	1	31.00	0.00	0.00	31.00	0.00
..................................................................CTTTGTGACCGACACTAACGGGT................................................................................................................	23	1	31.00	2.00	0.00	29.00	0.00
...................................................................TTTGTGACCGACATTAACGGGT................................................................................................................	22	1	29.00	0.00	0.00	29.00	0.00
...................................................................TTTGTAACCGACACTAACGGGT................................................................................................................	22	1	29.00	2.00	0.00	27.00	0.00
...................................................................TTTGTGAACGACACTAACGGGT................................................................................................................	22	1	28.00	2.00	0.00	26.00	0.00
...................................................................TTTGTGACCAACACTAACGGGT................................................................................................................	22	1	28.00	2.00	0.00	26.00	0.00
...................................................................TTTGTGACCGACACTACCGGGTA...............................................................................................................	23	1	27.00	1.00	0.00	26.00	0.00
...................................................................TTTGTGACCTACACTAACGGGT................................................................................................................	22	1	27.00	4.00	0.00	23.00	0.00
...................................................................TTTGTGACCGACACTAACTGGT................................................................................................................	22	1	26.00	2.00	0.00	24.00	0.00
...................................................................TTTGTTACCGACACTAACGGGT................................................................................................................	22	1	26.00	3.00	0.00	23.00	0.00
...................................................................TTTGTGACCGACACTAACGGAT................................................................................................................	22	1	25.00	0.00	0.00	25.00	0.00
...................................................................TTTGTGACCGACACTACCGGGC................................................................................................................	22	1	24.00	1.00	0.00	23.00	0.00
...................................................................ATTGTGACCGACACTAACGGGT................................................................................................................	22	1	24.00	1.00	0.00	23.00	0.00
...................................................................TTTGTGACCGATACTAACGGGT................................................................................................................	22	1	24.00	0.00	0.00	24.00	0.00
...................................................................TTTGTGACCGACACTATCGGGT................................................................................................................	22	1	22.00	1.00	0.00	21.00	0.00
...................................................................TTTGTCACCGACACTAACGGGT................................................................................................................	22	1	22.00	0.00	0.00	22.00	0.00
...................................................................TTAGTGACCGACACTAACGGGTA...............................................................................................................	23	1	21.00	0.00	0.00	21.00	0.00
...................................................................TTTGTGACCCACACTAACGGGT................................................................................................................	22	1	21.00	2.00	0.00	19.00	0.00
...................................................................TTTGTGATCGACACTAACGGGT................................................................................................................	22	1	21.00	1.00	0.00	20.00	0.00
...................................................................TTTGTGACCGACACTAACGGGTAAA.............................................................................................................	25	1	20.00	0.00	0.00	20.00	0.00
...................................................................TTTGTGACCGACACTAACGGGTTT..............................................................................................................	24	1	20.00	0.00	0.00	20.00	0.00
...................................................................TTTCTGACCGACACTAACGGGT................................................................................................................	22	1	20.00	1.00	0.00	19.00	0.00
...................................................................TTTGTGACCGACACTTACGGGT................................................................................................................	22	1	19.00	1.00	0.00	18.00	0.00
...................................................................TTTTTGACCGACACTAACGGGT................................................................................................................	22	1	19.00	4.00	0.00	15.00	0.00
...................................................................TTTGTGACCGAAACTAACGGGT................................................................................................................	22	1	17.00	2.00	0.00	15.00	0.00
...................................................................TTTGTGACCGACACTAACGCGC................................................................................................................	22	1	17.00	0.00	0.00	17.00	0.00
...................................................................TTCGTGACCGACACTAACGGGTA...............................................................................................................	23	1	16.00	0.00	0.00	16.00	0.00
...................................................................TTTGTGTCCGACACTAACGGGT................................................................................................................	22	1	16.00	1.00	0.00	15.00	0.00
...................................................................TTTGTGACCGACACTAACAGGTA...............................................................................................................	23	1	16.00	0.00	0.00	16.00	0.00
...................................................................TTTGTGACCGACACTACCGGG.................................................................................................................	21	1	15.00	0.00	0.00	15.00	0.00
...................................................................TGGGTGACCGACACTAACGGGT................................................................................................................	22	1	15.00	0.00	0.00	15.00	0.00
...................................................................TTTGTGACCGACACTAACGGA.................................................................................................................	21	1	14.00	0.00	0.00	14.00	0.00
...................................................................TTTGTGACCGACACTAACGGGGA...............................................................................................................	23	1	14.00	0.00	0.00	14.00	0.00
...................................................................TTTGTGACCGACACTAAGGGGT................................................................................................................	22	1	14.00	2.00	0.00	12.00	0.00
.....................................................................TGTGACCGACACTAACGGGT................................................................................................................	20	1	14.00	3.00	0.00	10.00	1.00
...................................................................TGTGTGACCGACACTAACGGGC................................................................................................................	22	1	14.00	0.00	0.00	14.00	0.00
...................................................................TTGGTGACCGACACTAACGGGC................................................................................................................	22	1	13.00	0.00	0.00	13.00	0.00
...................................................................TTTGTGACCGACACTAACGGGAA...............................................................................................................	23	1	13.00	0.00	0.00	13.00	0.00
...................................................................TTTGTGACCGAGACTAACGGGT................................................................................................................	22	1	13.00	1.00	0.00	12.00	0.00
...................................................................GTTGTGACCGACACTAACGGGT................................................................................................................	22	1	13.00	0.00	0.00	13.00	0.00
...................................................................TTTGTGACTGACACTAACGGGTA...............................................................................................................	23	1	12.00	0.00	0.00	12.00	0.00
...................................................................TTTGTGACCGACACTCACGGGC................................................................................................................	22	1	12.00	0.00	0.00	12.00	0.00
...................................................................TTTGAGACCGACACTAACGGGG................................................................................................................	22	1	11.00	0.00	0.00	11.00	0.00
...................................................................TTTGTGACCGACACTAAAGGGC................................................................................................................	22	1	11.00	0.00	0.00	11.00	0.00
...................................................................TGTGTGACCGACACTAACGGGTA...............................................................................................................	23	1	11.00	0.00	0.00	11.00	0.00
...................................................................TTTGTGACCGACACGAACGGGT................................................................................................................	22	1	11.00	0.00	0.00	11.00	0.00
...................................................................TTTGTGACCGACGCTAACGGGTA...............................................................................................................	23	1	10.00	0.00	0.00	10.00	0.00
...................................................................TTTGTGACCGCCACTACCGGGT................................................................................................................	22	1	10.00	0.00	0.00	10.00	0.00
...................................................................TTTGTGACCGCCACTAACGGGTA...............................................................................................................	23	1	10.00	0.00	0.00	10.00	0.00

droPer1

ACCT--GGCAC------CTGGGA--------CCTGGTCC--------CG----TGCTGCAGTTTCATTTTGTGACCGACACTAACGGGTAATGGC-TGGCC------------------GCAGGA---CTACTCGTTTTTGCGATCACA-ATACTGAAATTGCAGCAACG-AGCAGCG---------A--------AACTG	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
...................................................................TTTGTGACCGACACTAACGGGT................................................................................................................	22	1	97037.00	1373.00	2.00	44995.00	50639.00	28.00
...................................................................TTTGTGACCGACACTAACGGGTA...............................................................................................................	23	1	11678.00	75.00	1.00	7636.00	3965.00	1.00
...................................................................TTTGTGACCGACACTAACGGGC................................................................................................................	22	1	2038.00	8.00	0.00	691.00	1336.00	3.00
...................................................................TTTGTGACCGACACTAACGGG.................................................................................................................	21	1	1872.00	6.00	0.00	1003.00	855.00	8.00
...................................................................TTTGTGACCGACACTAACGGGTAA..............................................................................................................	24	1	1519.00	8.00	0.00	985.00	526.00	0.00
...................................................................TTTGTGACCGACACTAACGGGA................................................................................................................	22	1	1196.00	16.00	0.00	506.00	674.00	0.00
...................................................................TTTGTGACCGACACTAACGGGTAT..............................................................................................................	24	1	837.00	6.00	0.00	422.00	409.00	0.00
...................................................................TTTGTGACCGACACTAACG...................................................................................................................	19	1	597.00	0.00	0.00	307.00	290.00	0.00
...................................................................TTTGTGACCGACACTAACGG..................................................................................................................	20	1	462.00	4.00	0.00	238.00	220.00	0.00
...................................................................TTTGTGACCGACACTAACGGGG................................................................................................................	22	1	434.00	3.00	0.00	109.00	321.00	1.00
...................................................................TTTGTGACCGACACTACCGGGT................................................................................................................	22	1	413.00	1.00	0.00	155.00	257.00	0.00
...................................................................TTTGGGACCGACACTAACGGGT................................................................................................................	22	1	402.00	0.00	0.00	31.00	371.00	0.00
....................................................................TTGTGACCGACACTAACGGGT................................................................................................................	21	1	371.00	9.00	1.00	173.00	188.00	0.00
...................................................................TTTGTGACCGACACTAACGGGTT...............................................................................................................	23	1	277.00	2.00	0.00	152.00	123.00	0.00
...................................................................TTTGTCACCGACACTAACGGGT................................................................................................................	22	1	249.00	1.00	0.00	163.00	85.00	0.00
...................................................................TTGGTGACCGACACTAACGGGT................................................................................................................	22	1	245.00	0.00	0.00	25.00	220.00	0.00
...................................................................TTTGTGACCGACACTAACAGGT................................................................................................................	22	1	238.00	2.00	0.00	160.00	76.00	0.00
...................................................................TTTGTGACCGACACTAACGCGT................................................................................................................	22	1	214.00	0.00	0.00	79.00	135.00	0.00
...................................................................TTTGAGACCGACACTAACGGGT................................................................................................................	22	1	213.00	0.00	0.00	48.00	165.00	0.00
...................................................................TTTGTGACCGACTCTAACGGGT................................................................................................................	22	1	200.00	1.00	0.00	21.00	178.00	0.00
...................................................................TTTGTGACTGACACTAACGGGT................................................................................................................	22	1	188.00	1.00	0.00	74.00	113.00	0.00
...................................................................TTTGTGACCGACACTCACGGGT................................................................................................................	22	1	186.00	0.00	0.00	68.00	118.00	0.00
...................................................................TGTGTGACCGACACTAACGGGT................................................................................................................	22	1	178.00	0.00	0.00	22.00	156.00	0.00
...................................................................TTTGTGACCGACACTAACGGCT................................................................................................................	22	1	175.00	0.00	0.00	54.00	121.00	0.00
...................................................................TTTGTGACCGACGCTAACGGGT................................................................................................................	22	1	174.00	2.00	0.00	60.00	112.00	0.00
...................................................................TTTGTGACCGGCACTAACGGGT................................................................................................................	22	1	170.00	0.00	0.00	37.00	133.00	0.00
...................................................................TTTGTGACCGACAATAACGGGT................................................................................................................	22	1	166.00	2.00	0.00	54.00	110.00	0.00
...................................................................TTTGTAACCGACACTAACGGGT................................................................................................................	22	1	164.00	1.00	0.00	129.00	34.00	0.00
...................................................................CTTGTGACCGACACTAACGGGT................................................................................................................	22	1	163.00	3.00	0.00	46.00	114.00	0.00
...................................................................TTTGTGACCGACACTAACGTGT................................................................................................................	22	1	161.00	0.00	0.00	47.00	114.00	0.00
...................................................................TTTGTGACCGACACTAACGGGCA...............................................................................................................	23	1	160.00	1.00	0.00	93.00	66.00	0.00
...................................................................TTTGTGACCGACACTAACCGGT................................................................................................................	22	1	160.00	1.00	0.00	54.00	105.00	0.00
...................................................................TTTGCGACCGACACTAACGGGT................................................................................................................	22	1	155.00	2.00	0.00	60.00	93.00	0.00
...................................................................TTTGTGACAGACACTAACGGGT................................................................................................................	22	1	155.00	0.00	0.00	40.00	115.00	0.00
...................................................................TTTGTGACCGACACTAACGGTT................................................................................................................	22	1	144.00	1.00	0.00	31.00	112.00	0.00
...................................................................TTTGTGGCCGACACTAACGGGT................................................................................................................	22	1	140.00	0.00	0.00	64.00	76.00	0.00
...................................................................TTTGTGACCGCCACTAACGGGT................................................................................................................	22	1	138.00	1.00	0.00	45.00	92.00	0.00
...................................................................TTTGTGACCGACCCTAACGGGT................................................................................................................	22	1	122.00	0.00	0.00	37.00	85.00	0.00
...................................................................TTTGTGACCGACACTAACGGGTC...............................................................................................................	23	1	122.00	0.00	0.00	43.00	79.00	0.00
...................................................................TTTGTGACCGACACTAACGAGT................................................................................................................	22	1	117.00	0.00	0.00	85.00	32.00	0.00
...................................................................TTTGTGACCGACACTAGCGGGT................................................................................................................	22	1	107.00	0.00	0.00	45.00	62.00	0.00
...................................................................TTTGTGACCGACACTAAAGGGT................................................................................................................	22	1	105.00	0.00	0.00	46.00	59.00	0.00
...................................................................TTTGTGACCGACACTGACGGGT................................................................................................................	22	1	105.00	1.00	0.00	32.00	72.00	0.00
...................................................................TTTGTGACCAACACTAACGGGT................................................................................................................	22	1	104.00	1.00	0.00	48.00	55.00	0.00
...................................................................TTTGTGACCGACACTAACTGGT................................................................................................................	22	1	102.00	1.00	0.00	37.00	64.00	0.00
...................................................................TTTGTGAACGACACTAACGGGT................................................................................................................	22	1	100.00	0.00	0.00	33.00	67.00	0.00
...................................................................TTTGTGACCGTCACTAACGGGT................................................................................................................	22	1	95.00	0.00	0.00	15.00	80.00	0.00
..................................................................CTTTGTGACCGACACTAACGGGT................................................................................................................	23	1	91.00	0.00	0.00	39.00	52.00	0.00
...................................................................TTTGTGACCGACACTATCGGGT................................................................................................................	22	1	88.00	0.00	0.00	12.00	76.00	0.00
...................................................................TTTGTGACCGACACTAATGGGT................................................................................................................	22	1	88.00	0.00	0.00	30.00	58.00	0.00
...................................................................TTTGTTACCGACACTAACGGGT................................................................................................................	22	1	86.00	2.00	0.00	46.00	38.00	0.00
...................................................................TTTGTGATCGACACTAACGGGT................................................................................................................	22	1	85.00	2.00	0.00	31.00	52.00	0.00
...................................................................TTTGTGACCTACACTAACGGGT................................................................................................................	22	1	80.00	0.00	0.00	24.00	56.00	0.00
...................................................................TTTGTGACCGACACTAACGT..................................................................................................................	20	1	79.00	1.00	0.00	19.00	59.00	0.00
...................................................................TTTGTGACCGACACTACCGGGC................................................................................................................	22	1	77.00	0.00	0.00	23.00	54.00	0.00
...................................................................TTTGTGACCGACACTAACGGT.................................................................................................................	21	1	76.00	0.00	0.00	36.00	40.00	0.00
...................................................................TTTGTGACCCACACTAACGGGT................................................................................................................	22	1	76.00	0.00	0.00	18.00	58.00	0.00
...................................................................TTTGTGACCGACACCAACGGGT................................................................................................................	22	1	75.00	2.00	0.00	33.00	40.00	0.00
...................................................................TTTATGACCGACACTAACGGGT................................................................................................................	22	1	74.00	1.00	0.00	38.00	35.00	0.00
...................................................................TTTGTGACCGATACTAACGGGT................................................................................................................	22	1	74.00	2.00	0.00	28.00	44.00	0.00
...................................................................TTCGTGACCGACACTAACGGGT................................................................................................................	22	1	74.00	0.00	0.00	26.00	48.00	0.00
...................................................................TTTGTGACCGACATTAACGGGT................................................................................................................	22	1	71.00	0.00	0.00	22.00	49.00	0.00
...................................................................TCTGTGACCGACACTAACGGGT................................................................................................................	22	1	69.00	0.00	0.00	29.00	40.00	0.00
...................................................................................................................................CTCGTTTTTGCGATCACA-ATACT..............................................	23	1	67.00	1.00	0.00	21.00	45.00	0.00
...................................................................TTGGGGACCGACACTAACGGGT................................................................................................................	22	1	66.00	0.00	0.00	5.00	61.00	0.00
...................................................................TTTGTGACCGACACTAACGGAT................................................................................................................	22	1	63.00	0.00	0.00	40.00	23.00	0.00
...................................................................TTTGTGAGCGACACTAACGGGT................................................................................................................	22	1	63.00	1.00	0.00	13.00	49.00	0.00
...................................................................TTTCTGACCGACACTAACGGGT................................................................................................................	22	1	62.00	0.00	0.00	15.00	47.00	0.00
...................................................................TTTGTGACCGACACTAACGGGTTT..............................................................................................................	24	1	59.00	0.00	0.00	24.00	35.00	0.00
...................................................................GTTGTGACCGACACTAACGGGT................................................................................................................	22	1	58.00	0.00	0.00	15.00	43.00	0.00
...................................................................TTTGTGACCGACTCTAACGGGC................................................................................................................	22	1	58.00	0.00	0.00	12.00	46.00	0.00
...................................................................TTTGTGACCGACACTAACGCGC................................................................................................................	22	1	55.00	0.00	0.00	27.00	28.00	0.00
...................................................................TTTGTGACCGACACGAACGGGT................................................................................................................	22	1	55.00	0.00	0.00	4.00	51.00	0.00
...................................................................TTTGTGACCGACACTAACGGGTAC..............................................................................................................	24	1	53.00	0.00	0.00	29.00	24.00	0.00
...................................................................TTTGTGACCGAAACTAACGGGT................................................................................................................	22	1	51.00	0.00	0.00	19.00	32.00	0.00
....................................................................TTGTGACCGACACTAACGGGTA...............................................................................................................	22	1	48.00	0.00	0.00	31.00	17.00	0.00
...................................................................TTTGGGACCGACACTAACGGGTA...............................................................................................................	23	1	47.00	0.00	0.00	11.00	36.00	0.00
...................................................................TTAGTGACCGACACTAACGGGT................................................................................................................	22	1	47.00	0.00	0.00	9.00	38.00	0.00
...................................................................TTTGTGACCGACACTAACGGGAA...............................................................................................................	23	1	44.00	1.00	0.00	27.00	16.00	0.00
...................................................................TTTGGGACCGACACTAACGGGC................................................................................................................	22	1	43.00	0.00	0.00	5.00	38.00	0.00
...................................................................ATTGTGACCGACACTAACGGGT................................................................................................................	22	1	43.00	0.00	0.00	11.00	32.00	0.00
.....................................................................TGTGACCGACACTAACGGGT................................................................................................................	20	1	43.00	0.00	0.00	27.00	16.00	0.00
...................................................................TTTGTGACCGACACTTACGGGT................................................................................................................	22	1	41.00	0.00	0.00	9.00	32.00	0.00
...................................................................TGGGTGACCGACACTAACGGGT................................................................................................................	22	1	41.00	0.00	0.00	10.00	31.00	0.00
...................................................................TTTGTGTCCGACACTAACGGGT................................................................................................................	22	1	41.00	1.00	0.00	19.00	21.00	0.00
...................................................................TTTGCGACCGACACTAACGGGC................................................................................................................	22	1	41.00	0.00	0.00	9.00	32.00	0.00
...................................................................TTTGTGACCGACACTAAGGGGT................................................................................................................	22	1	40.00	0.00	0.00	10.00	30.00	0.00
...................................................................TGTGTGACCGACACTAACGGGC................................................................................................................	22	1	39.00	0.00	0.00	10.00	29.00	0.00
...................................................................TTTGTGACCGACACTACCGGGTA...............................................................................................................	23	1	38.00	0.00	0.00	16.00	22.00	0.00
...................................................................TTTGTGACCGACACTAACGGTC................................................................................................................	22	1	37.00	0.00	0.00	9.00	28.00	0.00
...................................................................TTTGTGACAGACACTAACGGGG................................................................................................................	22	1	36.00	0.00	0.00	9.00	27.00	0.00
...................................................................TTTTTGACCGACACTAACGGGT................................................................................................................	22	1	35.00	1.00	0.00	14.00	20.00	0.00
...................................................................TTGGTGACCGACACTAACGGGC................................................................................................................	22	1	35.00	0.00	0.00	9.00	26.00	0.00
...................................................................TTTGTGCCCGACACTAACGGGT................................................................................................................	22	1	32.00	0.00	0.00	7.00	25.00	0.00
...................................................................TTTGTGACTGACACTAACGGGTA...............................................................................................................	23	1	32.00	1.00	0.00	22.00	9.00	0.00
...................................................................TATGTGACCGACACTAACGGGT................................................................................................................	22	1	31.00	0.00	0.00	10.00	21.00	0.00
...................................................................TTTGTGACGGACACTAACGGGT................................................................................................................	22	1	31.00	0.00	0.00	6.00	25.00	0.00
...................................................................TTTGTGACCGACACTAACGGGGA...............................................................................................................	23	1	30.00	1.00	0.00	15.00	14.00	0.00
...................................................................TTTGAGACCGACACTAACGGGC................................................................................................................	22	1	28.00	0.00	0.00	5.00	23.00	0.00
...................................................................TTTGTGACCGACACTACCGCGT................................................................................................................	22	1	28.00	0.00	0.00	7.00	21.00	0.00
...................................................................TTTGTGACCGACACTAACAGGTA...............................................................................................................	23	1	27.00	0.00	0.00	20.00	7.00	0.00

droWil1

TTTTGTG---A------T-TATT--------TTTAATAT--------CC----TGTTGCAGTTTCATTTTGTGACCGACACTAACGGGTAGTAAC-GGGTTAACA--AAGTCGTT--TTTCTGGCCTTTTACTCGTTTTTGCGATCACAAATTCTGAAATTGCAGCAAAAGATCAACGTATACAACAAACACATAAAATGA	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
...................................................................TTTGTGACCGACACTAACGGGT................................................................................................................	22	1	96361.00	1015.00	229.00	66290.00	28827.00
...................................................................TTTGTGACCGACACTAACGGGTA...............................................................................................................	23	1	9411.00	59.00	69.00	5406.00	3877.00
...................................................................TTTGTGACCGACACTAACGGG.................................................................................................................	21	1	4983.00	15.00	2.00	983.00	3983.00
...................................................................TTTGTGACCGACACTAACGGGC................................................................................................................	22	1	3160.00	5.00	0.00	707.00	2448.00
...................................................................TTTGTGACCGACACTAACGG..................................................................................................................	20	1	1593.00	4.00	1.00	840.00	748.00
...................................................................TTTGTGACCGACACTAACGGGG................................................................................................................	22	1	1547.00	1.00	2.00	248.00	1296.00
...................................................................TTTGTGACCGACACTAACGGGA................................................................................................................	22	1	1248.00	12.00	2.00	1046.00	188.00
...................................................................TTTGTGACCGACACTAACGGGTAA..............................................................................................................	24	1	620.00	5.00	2.00	578.00	35.00
...................................................................TTTGTGACCGACACTAACG...................................................................................................................	19	1	492.00	1.00	0.00	335.00	156.00
...................................................................TTTGTGACCGACACTAACGGGTAT..............................................................................................................	24	1	315.00	4.00	6.00	235.00	70.00
...................................................................TTTGTGACCGAAACTAACGGGT................................................................................................................	22	1	299.00	0.00	0.00	293.00	6.00
...................................................................CTTGTGACCGACACTAACGGGT................................................................................................................	22	1	290.00	0.00	1.00	274.00	15.00
...................................................................TTTGTGACCGACACTAAAGGGT................................................................................................................	22	1	282.00	0.00	0.00	281.00	1.00
....................................................................TTGTGACCGACACTAACGGGT................................................................................................................	21	1	251.00	3.00	1.00	219.00	28.00
...................................................................TTTGTGACCGACACTAACGGGTC...............................................................................................................	23	1	213.00	0.00	0.00	73.00	140.00
...................................................................TTTGTGACAGACACTAACGGGT................................................................................................................	22	1	212.00	0.00	0.00	203.00	9.00
...................................................................TTTGTGAACGACACTAACGGGT................................................................................................................	22	1	204.00	0.00	0.00	201.00	3.00
...................................................................TTTGTGACCGACAATAACGGGT................................................................................................................	22	1	191.00	0.00	1.00	188.00	2.00
...................................................................TTTGTGACCAACACTAACGGGT................................................................................................................	22	1	178.00	1.00	0.00	157.00	20.00
...................................................................TTTGTGACTGACACTAACGGGT................................................................................................................	22	1	173.00	1.00	1.00	135.00	36.00
...................................................................TTTGTGATCGACACTAACGGGT................................................................................................................	22	1	171.00	0.00	0.00	139.00	32.00
...................................................................TTTGTGACCGACACTAACAGGT................................................................................................................	22	1	161.00	0.00	0.00	150.00	11.00
...................................................................TTTGTGACCGACGCTAACGGGT................................................................................................................	22	1	148.00	2.00	0.00	52.00	94.00
...................................................................TTTGTGACCTACACTAACGGGT................................................................................................................	22	1	146.00	4.00	1.00	111.00	30.00
...................................................................TTTGTGACCGACACTAACGGT.................................................................................................................	21	1	145.00	2.00	1.00	130.00	12.00
...................................................................TTTGTGACCGACACTAACTGGT................................................................................................................	22	1	140.00	0.00	0.00	137.00	3.00
...................................................................TTTGTGACCGACACTAACGGGTT...............................................................................................................	23	1	136.00	3.00	1.00	32.00	100.00
...................................................................TTTGTGGCCGACACTAACGGGT................................................................................................................	22	1	130.00	2.00	0.00	69.00	59.00
...................................................................TTTGTAACCGACACTAACGGGT................................................................................................................	22	1	124.00	1.00	0.00	114.00	9.00
...................................................................TTTGTTACCGACACTAACGGGT................................................................................................................	22	1	117.00	2.00	1.00	107.00	7.00
...................................................................TTTGCGACCGACACTAACGGGT................................................................................................................	22	1	117.00	5.00	0.00	98.00	14.00
...................................................................TTTGTGACCGACACTAATGGGT................................................................................................................	22	1	113.00	1.00	0.00	95.00	17.00
...................................................................TTTGTGACCGACACTAACGTGT................................................................................................................	22	1	110.00	0.00	0.00	93.00	17.00
...................................................................TTTGTGACCGACACTAACGGAT................................................................................................................	22	1	106.00	0.00	0.00	100.00	6.00
...................................................................ATTGTGACCGACACTAACGGGT................................................................................................................	22	1	102.00	0.00	0.00	101.00	1.00
...................................................................TTTTTGACCGACACTAACGGGT................................................................................................................	22	1	102.00	0.00	0.00	69.00	33.00
...................................................................TTCGTGACCGACACTAACGGGT................................................................................................................	22	1	99.00	3.00	0.00	91.00	5.00
...................................................................TTTGTGACCGACACTAACGAGT................................................................................................................	22	1	98.00	0.00	0.00	98.00	0.00
...................................................................TCTGTGACCGACACTAACGGGT................................................................................................................	22	1	91.00	0.00	0.00	85.00	6.00
...................................................................GTTGTGACCGACACTAACGGGT................................................................................................................	22	1	90.00	0.00	0.00	87.00	3.00
..................................................................CTTTGTGACCGACACTAACGGGT................................................................................................................	23	1	90.00	2.00	0.00	81.00	7.00
.....................................................................TTTGACCGACACTAACGGGT................................................................................................................	20	1	89.00	1.00	0.00	79.00	9.00
...................................................................TTTGTGACCGCCACTAACGGGT................................................................................................................	22	1	87.00	1.00	0.00	79.00	7.00
...................................................................TTTGTGACCGACACTACCGGGT................................................................................................................	22	1	85.00	0.00	0.00	84.00	1.00
...................................................................TTTGTGACCxACACTAACGGGT................................................................................................................	21	1	80.00	0.00	0.00	59.00	21.00
...................................................................TTTGTGACCGACACTAGCGGGT................................................................................................................	22	1	78.00	0.00	0.00	49.00	29.00
...................................................................TTTATGACCGACACTAACGGGT................................................................................................................	22	1	77.00	0.00	0.00	71.00	6.00
...................................................................TTTGTGACCGGCACTAACGGGT................................................................................................................	22	1	71.00	1.00	1.00	47.00	22.00
...................................................................TTTGTGACCGACCCTAACGGGT................................................................................................................	22	1	71.00	0.00	1.00	55.00	15.00
...................................................................TTTGTGACCGACACTAACGGGTAG..............................................................................................................	24	1	69.00	0.00	0.00	27.00	42.00
...................................................................TTTGTGACCGATACTAACGGGT................................................................................................................	22	1	66.00	0.00	0.00	60.00	6.00
...................................................................TTTGTGACCGACATTAACGGGT................................................................................................................	22	1	65.00	1.00	0.00	56.00	8.00
...................................................................TTTGTGACCGACACCAACGGGT................................................................................................................	22	1	63.00	1.00	0.00	58.00	4.00
...................................................................TTTGTCACCGACACTAACGGGT................................................................................................................	22	1	63.00	0.00	1.00	60.00	2.00
...................................................................TTTGTGACCGACACTGACGGGT................................................................................................................	22	1	60.00	0.00	0.00	52.00	8.00
...................................................................TTTGGGACCGACACTAACGGGT................................................................................................................	22	1	59.00	0.00	0.00	5.00	54.00
...................................................................TTTGTGACCCACACTAACGGGT................................................................................................................	22	1	57.00	0.00	0.00	53.00	4.00
...................................................................TTTGTGACCGACACTAACCGGT................................................................................................................	22	1	57.00	1.00	1.00	52.00	3.00
...................................................................TTTCTGACCGACACTAACGGGT................................................................................................................	22	1	57.00	1.00	0.00	48.00	8.00
...................................................................TTTGTGACCGACACTAACGGGAA...............................................................................................................	23	1	55.00	1.00	0.00	26.00	28.00
...................................................................TTTGTGACCGACACTAACGCGT................................................................................................................	22	1	53.00	0.00	0.00	44.00	9.00
.....................................................................TGTGACCGACACTAACGGGT................................................................................................................	20	1	51.00	2.00	0.00	47.00	2.00
...................................................................TTTGTGAxCGACACTAACGGGT................................................................................................................	21	1	51.00	0.00	0.00	50.00	1.00
...................................................................TTTGTGACCGACACTAAGGGGT................................................................................................................	22	1	46.00	0.00	1.00	43.00	2.00
....................................................................TTTTGACCGACACTAACGGGT................................................................................................................	21	1	46.00	0.00	0.00	40.00	6.00
...................................................................TTTGAGACCGACACTAACGGGT................................................................................................................	22	1	40.00	0.00	0.00	34.00	6.00
...................................................................TTTGTGACCGACACTCACGGGT................................................................................................................	22	1	37.00	0.00	0.00	37.00	0.00
...................................................................................................................................CTCGTTTTTGCGATCACAAATT................................................	22	1	35.00	0.00	0.00	31.00	4.00
...................................................................TTTGTGACCGACACTAACGGCT................................................................................................................	22	1	34.00	0.00	0.00	31.00	3.00
...................................................................TTTGTGACTGACACTAACGGGTA...............................................................................................................	23	1	31.00	0.00	1.00	20.00	10.00
...................................................................TTTGTGACGGACACTAACGGGT................................................................................................................	22	1	31.00	1.00	0.00	25.00	5.00
...................................................................TTTGTGACCGACACAAACGGGT................................................................................................................	22	1	31.00	0.00	0.00	28.00	3.00
...................................................................TTTGTGACCGACACTAACGGA.................................................................................................................	21	1	30.00	0.00	0.00	17.00	13.00
...................................................................TTTGTGACCGACACTAACGGAC................................................................................................................	22	1	30.00	0.00	0.00	0.00	30.00
...................................................................TTTGTGACCGxxACTAACGGGT................................................................................................................	20	1	29.00	1.00	0.00	26.00	2.00
...................................................................TTTGTGACCGACACTAACGGGCA...............................................................................................................	23	1	29.00	0.00	0.00	19.00	10.00
...................................................................TTTGTGATCGACACTAACGGGTA...............................................................................................................	23	1	28.00	0.00	0.00	20.00	8.00
...................................................................CTTGTGACCGACACTAACGGGTA...............................................................................................................	23	1	28.00	1.00	1.00	24.00	2.00
...................................................................................................................................CTCGTTTTTGCGATCACAAATTC...............................................	23	1	27.00	0.00	0.00	4.00	23.00
...................................................................TTTGTGACCGACACTAACGGGTG...............................................................................................................	23	1	27.00	0.00	0.00	7.00	20.00
....................................................................TTTGGACCGACACTAACGGGT................................................................................................................	21	1	27.00	0.00	0.00	26.00	1.00
...................................................................TTTGTGACCGACACTxACGGGT................................................................................................................	21	1	26.00	0.00	0.00	25.00	1.00
...................................................................TTTGTGACCGACACTAACGGTT................................................................................................................	22	1	24.00	0.00	0.00	21.00	3.00
...................................................................TTTGTGACCGACACTATCGGGT................................................................................................................	22	1	24.00	1.00	0.00	21.00	2.00
...................................................................TTTGTGACCTACACTAACGGGTA...............................................................................................................	23	1	24.00	0.00	0.00	16.00	8.00
...................................................................TTTGTGACCGACACTAAAGGGTA...............................................................................................................	23	1	24.00	0.00	0.00	24.00	0.00
...................................................................TTTGTGACCGACACTAACGGGTAAA.............................................................................................................	25	1	24.00	0.00	0.00	23.00	1.00
...................................................................TTTGTGACCGAAACTAACGGGTA...............................................................................................................	23	1	23.00	0.00	0.00	23.00	0.00
...................................................................TTTGTGACCGACACTAACGGGGA...............................................................................................................	23	1	23.00	0.00	0.00	10.00	13.00
...................................................................TTTGTGACCGACGCTAACGGGTA...............................................................................................................	23	1	23.00	0.00	0.00	6.00	17.00
...................................................................TTTGTGACCGACACTAACGGGTAC..............................................................................................................	24	1	23.00	0.00	0.00	10.00	13.00
...................................................................TTTGTxACCGACACTAACGGGT................................................................................................................	21	1	22.00	0.00	0.00	21.00	1.00
...................................................................TTTGTGACCGAGACTAACGGGT................................................................................................................	22	1	22.00	0.00	0.00	20.00	2.00
...................................................................TTTGTGACCGTCACTAACGGGT................................................................................................................	22	1	21.00	0.00	0.00	20.00	1.00
...................................................................TTTGTGACCAACACTAACGGGTA...............................................................................................................	23	1	21.00	0.00	0.00	19.00	2.00
...................................................................TTTGTGACCGACTCTAACGGGT................................................................................................................	22	1	20.00	0.00	0.00	15.00	5.00
...................................................................TTTGTGTCCGACACTAACGGGT................................................................................................................	22	1	19.00	1.00	0.00	16.00	2.00
...................................................................TTTGTGACCGACACTAACGT..................................................................................................................	20	1	19.00	0.00	0.00	12.00	7.00
...................................................................TTTGTGACAGACACTAACGGGTA...............................................................................................................	23	1	18.00	0.00	0.00	18.00	0.00
......................................................................TTGACCGACACTAACGGGT................................................................................................................	19	1	17.00	0.00	0.00	14.00	3.00
...................................................................TATGTGACCGACACTAACGGGT................................................................................................................	22	1	17.00	0.00	0.00	16.00	1.00

droVir3

AATC-------------CCAATG--------TCGCATCCTG------TT----TGTTGCAGTTTCGGTTTGTGACCGACACTAACGGGTAGTTGG---GGCACC------TCGAATA-CGCTGTT---TTACTCGTTTTTGCGATCACAAATTCTGAAATTGCAACGAAA-AGCAACA---------A-----GAAAATTT	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
...................................................................TTTGTGACCGACACTAACGGGT................................................................................................................	22	1	73392.00	3811.00	57992.00	5.00	1178.00	10406.00
...................................................................TTTGTGACCGACACTAACGGGTA...............................................................................................................	23	1	6896.00	166.00	5346.00	2.00	172.00	1210.00
...................................................................TTTGTGACCGACACTAACGGG.................................................................................................................	21	1	2776.00	53.00	1146.00	0.00	200.00	1377.00
...................................................................TTTGTGACCGACACTAACGGGC................................................................................................................	22	1	2747.00	21.00	1346.00	0.00	109.00	1271.00
...................................................................TTTGTGACCGACACTAACGGGA................................................................................................................	22	1	1946.00	88.00	1671.00	0.00	14.00	173.00
...................................................................TTTGTGACCGACACTAACGGGG................................................................................................................	22	1	1249.00	22.00	420.00	0.00	93.00	714.00
...................................................................TTTGTGACCGACACTAACGGGTAT..............................................................................................................	24	1	871.00	33.00	796.00	0.00	3.00	39.00
...................................................................TTTGTGACCGACACTAACGGGTAA..............................................................................................................	24	1	821.00	11.00	782.00	0.00	3.00	25.00
...................................................................TTTGTGACCGACACTAACGG..................................................................................................................	20	1	559.00	19.00	187.00	0.00	37.00	316.00
...................................................................TTTGTGACCGACACTAACGGGTT...............................................................................................................	23	1	336.00	3.00	212.00	0.00	9.00	112.00
...................................................................TTTGTGACCGACACTAACGCGT................................................................................................................	22	1	332.00	2.00	328.00	0.00	1.00	1.00
...................................................................TTTGTGACCGACACTAACG...................................................................................................................	19	1	298.00	2.00	251.00	0.00	1.00	44.00
...................................................................TTTGTGACCGACACTAACGGCT................................................................................................................	22	1	289.00	0.00	289.00	0.00	0.00	0.00
...................................................................TGTGTGACCGACACTAACGGGT................................................................................................................	22	1	253.00	0.00	253.00	0.00	0.00	0.00
...................................................................TTTGTCACCGACACTAACGGGT................................................................................................................	22	1	162.00	1.00	160.00	0.00	0.00	1.00
...................................................................TTTGTGACCGACACTACCGGGT................................................................................................................	22	1	160.00	0.00	158.00	0.00	0.00	2.00
....................................................................TTGTGACCGACACTAACGGGT................................................................................................................	21	1	155.00	9.00	129.00	0.00	1.00	16.00
...................................................................TTTGTGACTGACACTAACGGGT................................................................................................................	22	1	141.00	3.00	122.00	0.00	1.00	15.00
...................................................................TTTGTGACCGACAATAACGGGT................................................................................................................	22	1	140.00	1.00	139.00	0.00	0.00	0.00
...................................................................TTTGTGACAGACACTAACGGGT................................................................................................................	22	1	136.00	1.00	117.00	0.00	1.00	17.00
...................................................................TTTGTGACCGACTCTAACGGGT................................................................................................................	22	1	136.00	0.00	136.00	0.00	0.00	0.00
...................................................................TTGGTGACCGACACTAACGGGT................................................................................................................	22	1	135.00	0.00	134.00	0.00	0.00	1.00
...................................................................TTTGGGACCGACACTAACGGGT................................................................................................................	22	1	132.00	0.00	120.00	0.00	3.00	9.00
...................................................................TTTGTGACCGACGCTAACGGGT................................................................................................................	22	1	128.00	0.00	121.00	0.00	0.00	7.00
...................................................................TTTGTGGCCGACACTAACGGGT................................................................................................................	22	1	119.00	5.00	87.00	0.00	2.00	25.00
...................................................................TTTGAGACCGACACTAACGGGT................................................................................................................	22	1	118.00	0.00	115.00	0.00	0.00	3.00
...................................................................CTTGTGACCGACACTAACGGGT................................................................................................................	22	1	109.00	4.00	87.00	0.00	4.00	14.00
...................................................................TTTGTGACCGACACTAACGGTT................................................................................................................	22	1	106.00	1.00	105.00	0.00	0.00	0.00
...................................................................TTTGTGACCGACACTAACGGGCA...............................................................................................................	23	1	104.00	1.00	102.00	0.00	0.00	1.00
...................................................................TTTGTGACCGACACTCACGGGT................................................................................................................	22	1	100.00	0.00	100.00	0.00	0.00	0.00
...................................................................TTTGTGACCGACACTAACGCGC................................................................................................................	22	1	98.00	0.00	98.00	0.00	0.00	0.00
...................................................................TTTGTGACCGACACTAACGGGTC...............................................................................................................	23	1	97.00	2.00	69.00	0.00	12.00	14.00
...................................................................TTTGCGACCGACACTAACGGGT................................................................................................................	22	1	97.00	1.00	89.00	0.00	1.00	6.00
...................................................................TTTGTGACCGACCCTAACGGGT................................................................................................................	22	1	96.00	0.00	95.00	0.00	0.00	1.00
...................................................................TTTGTGACCGGCACTAACGGGT................................................................................................................	22	1	89.00	2.00	78.00	0.00	0.00	9.00
...................................................................TTTGTGACCGACACTAACAGGT................................................................................................................	22	1	86.00	3.00	79.00	0.00	0.00	4.00
...................................................................TTTGTGACCGTCACTAACGGGT................................................................................................................	22	1	86.00	0.00	86.00	0.00	0.00	0.00
...................................................................TTTGTGACCGACACTAACGTGT................................................................................................................	22	1	86.00	1.00	80.00	0.00	2.00	3.00
...................................................................TTTGTGACCGACACTAGCGGGT................................................................................................................	22	1	82.00	2.00	71.00	0.00	0.00	9.00
...................................................................TTTGTGATCGACACTAACGGGT................................................................................................................	22	1	76.00	3.00	66.00	0.00	0.00	7.00
...................................................................TTTGTGACCGACACTAATGGGT................................................................................................................	22	1	75.00	0.00	71.00	0.00	0.00	4.00
...................................................................TTTGTGACCGATACTAACGGGT................................................................................................................	22	1	72.00	2.00	62.00	0.00	0.00	8.00
...................................................................TTTGTGACCGACACTAACCGGT................................................................................................................	22	1	72.00	0.00	72.00	0.00	0.00	0.00
...................................................................TTTGTGACCGACACTGACGGGT................................................................................................................	22	1	70.00	1.00	64.00	0.00	1.00	4.00
...................................................................TTTGTGACCTACACTAACGGGT................................................................................................................	22	1	69.00	1.00	59.00	0.00	2.00	7.00
...................................................................TTTGTGACCGACACTATCGGGT................................................................................................................	22	1	69.00	1.00	64.00	0.00	2.00	2.00
..................................................................CTTTGTGACCGACACTAACGGGT................................................................................................................	23	1	63.00	4.00	59.00	0.00	0.00	0.00
...................................................................TTTGTGACCGACACTAACGGA.................................................................................................................	21	1	59.00	0.00	28.00	0.00	0.00	31.00
...................................................................TTTGTGACCGACACTAACGGGTTT..............................................................................................................	24	1	59.00	1.00	49.00	0.00	1.00	8.00
...................................................................TTTGTCACCGACACTAACGCGT................................................................................................................	22	1	53.00	0.00	53.00	0.00	0.00	0.00
...................................................................TTTGTGACCGACACTAACGGGAA...............................................................................................................	23	1	52.00	0.00	37.00	0.00	0.00	15.00
...................................................................TTTGTGACCGCCACTAACGGGT................................................................................................................	22	1	52.00	1.00	51.00	0.00	0.00	0.00
...................................................................TTTGTAACCGACACTAACGGGT................................................................................................................	22	1	51.00	1.00	45.00	0.00	1.00	4.00
...................................................................TTTGTGACCGACACTAACTGGT................................................................................................................	22	1	51.00	1.00	47.00	1.00	0.00	2.00
...................................................................TTTGTTACCGACACTAACGGGT................................................................................................................	22	1	50.00	7.00	40.00	0.00	0.00	3.00
...................................................................TTTGTGAACGACACTAACGGGT................................................................................................................	22	1	49.00	0.00	47.00	0.00	1.00	1.00
...................................................................TTTGTGACCAACACTAACGGGT................................................................................................................	22	1	48.00	2.00	43.00	0.00	0.00	3.00
...................................................................TGGGTGACCGACACTAACGGGT................................................................................................................	22	1	48.00	0.00	48.00	0.00	0.00	0.00
...................................................................TTTGTGACCGACACTAACGGCC................................................................................................................	22	1	47.00	0.00	47.00	0.00	0.00	0.00
...................................................................TTTCTGACCGACACTAACGGGT................................................................................................................	22	1	43.00	1.00	41.00	0.00	0.00	1.00
...................................................................TCTGTGACCGACACTAACGGGT................................................................................................................	22	1	43.00	5.00	37.00	0.00	0.00	1.00
...................................................................TTTGTGACCGACATTAACGGGT................................................................................................................	22	1	42.00	4.00	37.00	0.00	0.00	1.00
...................................................................TTTGTGACCGACACTAACGGT.................................................................................................................	21	1	42.00	8.00	32.00	0.00	0.00	2.00
...................................................................TTCGTGACCGACACTAACGGGT................................................................................................................	22	1	42.00	2.00	38.00	0.00	1.00	1.00
...................................................................TTTGTGACCGACACTAACGGGTAG..............................................................................................................	24	1	40.00	1.00	26.00	0.00	3.00	10.00
...................................................................TTTGTGACCCACACTAACGGGT................................................................................................................	22	1	40.00	1.00	38.00	0.00	0.00	1.00
...................................................................TTTGTGACCGACACTACCGGGC................................................................................................................	22	1	39.00	0.00	39.00	0.00	0.00	0.00
...................................................................TTTGTGACCGACACTAACGGTC................................................................................................................	22	1	39.00	0.00	39.00	0.00	0.00	0.00
...................................................................TGTGTGACCGACACTAACGGGC................................................................................................................	22	1	39.00	0.00	39.00	0.00	0.00	0.00
...................................................................TGTGTGACCGACACTAACGGGG................................................................................................................	22	1	39.00	0.00	39.00	0.00	0.00	0.00
...................................................................TTTGTGACCGACACCAACGGGT................................................................................................................	22	1	36.00	6.00	28.00	0.00	0.00	2.00
...................................................................TTTGTGACCGACACTAACGAGT................................................................................................................	22	1	36.00	4.00	30.00	0.00	0.00	2.00
...................................................................TTTGTGACCGACACGAACGGGT................................................................................................................	22	1	34.00	1.00	33.00	0.00	0.00	0.00
...................................................................TTTGTCACCGACACTAACGGCT................................................................................................................	22	1	33.00	0.00	33.00	0.00	0.00	0.00
...................................................................TTTGTGCCCGACACTAACGGGT................................................................................................................	22	1	33.00	1.00	32.00	0.00	0.00	0.00
...................................................................TTTGTGACCGACACTAAAGGGT................................................................................................................	22	1	32.00	5.00	27.00	0.00	0.00	0.00
...................................................................TTTGTGACCGACACTAACGGAT................................................................................................................	22	1	32.00	1.00	26.00	0.00	0.00	5.00
...................................................................TTTATGACCGACACTAACGGGT................................................................................................................	22	1	32.00	1.00	28.00	0.00	1.00	2.00
...................................................................TTTGTCACCGACACTAACGGGC................................................................................................................	22	1	31.00	0.00	31.00	0.00	0.00	0.00
...................................................................TTTGTGACCGACACTAACGGAC................................................................................................................	22	1	30.00	0.00	2.00	0.00	3.00	25.00
...................................................................GTTGTGACCGACACTAACGGGT................................................................................................................	22	1	30.00	4.00	24.00	0.00	1.00	1.00
...................................................................TTTGTGACCGACTCTAACGGGC................................................................................................................	22	1	29.00	0.00	29.00	0.00	0.00	0.00
...................................................................TTTGTGACCGACACTAACGGGGA...............................................................................................................	23	1	29.00	1.00	27.00	0.00	0.00	1.00
...................................................................TTTGTGACCGACACTAACGGGTATT.............................................................................................................	25	1	28.00	2.00	23.00	0.00	0.00	3.00
...................................................................TTTGTGACCGACACTAACGCCT................................................................................................................	22	1	27.00	0.00	27.00	0.00	0.00	0.00
...................................................................TTTGTGACCGACACTAACGGGTAAA.............................................................................................................	25	1	27.00	0.00	26.00	0.00	0.00	1.00
.....................................................................TGTGACCGACACTAACGGGT................................................................................................................	20	1	27.00	1.00	25.00	0.00	0.00	1.00
...................................................................TTTGTGACTGACACTAACGGGTA...............................................................................................................	23	1	26.00	0.00	18.00	0.00	0.00	8.00
...................................................................ATTGTGACCGACACTAACGGGT................................................................................................................	22	1	26.00	1.00	24.00	0.00	0.00	1.00
...................................................................TTTTTGACCGACACTAACGGGT................................................................................................................	22	1	25.00	5.00	16.00	0.00	0.00	4.00
...................................................................TTGGGGACCGACACTAACGGGT................................................................................................................	22	1	25.00	0.00	25.00	0.00	0.00	0.00
...................................................................TTTGTGACCGACACTTACGGGT................................................................................................................	22	1	25.00	0.00	25.00	0.00	0.00	0.00
...................................................................TTTGTGACCGACACTAACGGGTG...............................................................................................................	23	1	25.00	0.00	12.00	0.00	0.00	13.00
...................................................................TTTGTGACCGACACTAACGCGTA...............................................................................................................	23	1	25.00	0.00	25.00	0.00	0.00	0.00
...................................................................TTTGTGACCGAAACTAACGGGT................................................................................................................	22	1	24.00	4.00	8.00	0.00	1.00	11.00
...................................................................TTTGTGACCGACACTAAGGGGT................................................................................................................	22	1	24.00	1.00	23.00	0.00	0.00	0.00
...................................................................TTTGTGAGCGACACTAACGGGT................................................................................................................	22	1	23.00	0.00	23.00	0.00	0.00	0.00
...................................................................TGTGTGACCGACACTAACGGGTA...............................................................................................................	23	1	22.00	0.00	22.00	0.00	0.00	0.00
...................................................................TTTGTGACCGACACTAACGCGG................................................................................................................	22	1	22.00	0.00	21.00	0.00	1.00	0.00
...................................................................TTTGTGACAGACACTAACGGGG................................................................................................................	22	1	21.00	0.00	21.00	0.00	0.00	0.00
...................................................................TTTGTGACCGACAATAACGGGC................................................................................................................	22	1	20.00	0.00	19.00	0.00	1.00	0.00

droMoj3

GAATCTGTTG-TCAAGT----------------GTATCC--------TG----TGTTGCAGTTTCGGTTTGTGACCGACACTAACGGGTAGTTGA--GGCATC-------TCGTATT-CGCTGTT-TTATACTCGTTTTTGCGATCACAAATTCTGAAATTGCAACGAAA-CGCAACG---------A--------AAATG	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
...................................................................TTTGTGACCGACACTAACGGGT................................................................................................................	22	1	126593.00	4671.00	66752.00	55166.00	4.00
...................................................................TTTGTGACCGACACTAACGGGTA...............................................................................................................	23	1	6603.00	250.00	3601.00	2752.00	0.00
...................................................................TTTGTGACCGACACTAACGGGA................................................................................................................	22	1	2486.00	65.00	1411.00	1010.00	0.00
...................................................................TTTGTGACCGACACTAACGGG.................................................................................................................	21	1	1893.00	30.00	1029.00	834.00	0.00
...................................................................TTTGTGACCGACACTAACGGGC................................................................................................................	22	1	1380.00	10.00	966.00	404.00	0.00
...................................................................TTTGTGACCGACACTCACGGGT................................................................................................................	22	1	1139.00	0.00	145.00	994.00	0.00
...................................................................TTTGTGACCGACACTAACGGGTAT..............................................................................................................	24	1	951.00	34.00	527.00	390.00	0.00
...................................................................TTTGTGACCGACACTAACGGGTAA..............................................................................................................	24	1	912.00	11.00	519.00	382.00	0.00
...................................................................TTTGTGACCGACACTACCGGGT................................................................................................................	22	1	782.00	2.00	267.00	513.00	0.00
....................................................................TTGTGACCGACACTAACGGGT................................................................................................................	21	1	658.00	31.00	344.00	283.00	0.00
...................................................................TTTGTGACCGACACTAACGGGG................................................................................................................	22	1	543.00	6.00	249.00	288.00	0.00
...................................................................TTTGTGACCGACACTAACGG..................................................................................................................	20	1	483.00	12.00	289.00	182.00	0.00
...................................................................TTTGTGACCGACACTAACGTGT................................................................................................................	22	1	373.00	3.00	76.00	294.00	0.00
...................................................................TTTGTGACCGACACTAACG...................................................................................................................	19	1	369.00	5.00	186.00	178.00	0.00
...................................................................TTTGTGACCGACACTAACTGGT................................................................................................................	22	1	317.00	8.00	59.00	250.00	0.00
...................................................................TTTGTGACCGACACTAACAGGT................................................................................................................	22	1	297.00	5.00	90.00	202.00	0.00
...................................................................TTTGTGACCGACTCTAACGGGT................................................................................................................	22	1	293.00	0.00	157.00	136.00	0.00
...................................................................TTTGTGACCGACCCTAACGGGT................................................................................................................	22	1	290.00	0.00	93.00	197.00	0.00
...................................................................TTTGTGACCGCCACTAACGGGT................................................................................................................	22	1	254.00	0.00	87.00	167.00	0.00
...................................................................CTTGTGACCGACACTAACGGGT................................................................................................................	22	1	234.00	3.00	120.00	111.00	0.00
...................................................................TTTGTGACCGACACTAACGGGTT...............................................................................................................	23	1	228.00	5.00	115.00	107.00	1.00
...................................................................TTTGTGACCGACGCTAACGGGT................................................................................................................	22	1	221.00	4.00	115.00	102.00	0.00
...................................................................TTTGTGACCGACACTAACGGTT................................................................................................................	22	1	220.00	2.00	119.00	99.00	0.00
...................................................................TTTGTGACCGACACTAACGCGT................................................................................................................	22	1	216.00	1.00	92.00	123.00	0.00
...................................................................TTTGCGACCGACACTAACGGGT................................................................................................................	22	1	214.00	7.00	126.00	81.00	0.00
...................................................................TTTGTGGCCGACACTAACGGGT................................................................................................................	22	1	210.00	7.00	108.00	95.00	0.00
...................................................................TGTGTGACCGACACTAACGGGT................................................................................................................	22	1	203.00	0.00	106.00	97.00	0.00
...................................................................TTTGTGACCGACAATAACGGGT................................................................................................................	22	1	198.00	2.00	85.00	111.00	0.00
...................................................................TTGGTGACCGACACTAACGGGT................................................................................................................	22	1	189.00	0.00	116.00	73.00	0.00
...................................................................TTTGGGACCGACACTAACGGGT................................................................................................................	22	1	186.00	1.00	120.00	65.00	0.00
...................................................................TTTGTGACTGACACTAACGGGT................................................................................................................	22	1	172.00	7.00	106.00	59.00	0.00
...................................................................TTTGTGACCGGCACTAACGGGT................................................................................................................	22	1	171.00	4.00	86.00	81.00	0.00
...................................................................TTTGTGACCGACACTGACGGGT................................................................................................................	22	1	162.00	4.00	90.00	68.00	0.00
...................................................................TTTGTGACCAACACTAACGGGT................................................................................................................	22	1	160.00	5.00	68.00	87.00	0.00
...................................................................TTTGTGACCGACACTAACCGGT................................................................................................................	22	1	154.00	1.00	67.00	86.00	0.00
...................................................................TTTGTGACCTACACTAACGGGT................................................................................................................	22	1	152.00	10.00	39.00	103.00	0.00
...................................................................TTTGTGACCGACACTAGCGGGT................................................................................................................	22	1	152.00	1.00	86.00	65.00	0.00
...................................................................TTTGTGACCGACACTAACGGCT................................................................................................................	22	1	149.00	1.00	97.00	51.00	0.00
...................................................................TTTGAGACCGACACTAACGGGT................................................................................................................	22	1	134.00	0.00	113.00	21.00	0.00
...................................................................TTTGTTACCGACACTAACGGGT................................................................................................................	22	1	133.00	12.00	38.00	83.00	0.00
...................................................................TTTGTGACCGACACCAACGGGT................................................................................................................	22	1	129.00	0.00	66.00	63.00	0.00
...................................................................TTTGTGACAGACACTAACGGGT................................................................................................................	22	1	126.00	1.00	81.00	44.00	0.00
...................................................................TTTGTGACCGACACTAAAGGGT................................................................................................................	22	1	126.00	5.00	54.00	67.00	0.00
...................................................................TTTGTCACCGACACTAACGGGT................................................................................................................	22	1	123.00	3.00	69.00	51.00	0.00
..................................................................CTTTGTGACCGACACTAACGGGT................................................................................................................	23	1	116.00	0.00	73.00	43.00	0.00
...................................................................TTTGTGACCCACACTAACGGGT................................................................................................................	22	1	114.00	0.00	49.00	65.00	0.00
...................................................................TTTGTGACCGACACTAACGGGTC...............................................................................................................	23	1	114.00	4.00	57.00	53.00	0.00
...................................................................TTTGTGACCGACACTAACGAGT................................................................................................................	22	1	110.00	1.00	40.00	69.00	0.00
...................................................................TTTGTGACCGACACTAATGGGT................................................................................................................	22	1	110.00	3.00	60.00	47.00	0.00
...................................................................TTTGTAACCGACACTAACGGGT................................................................................................................	22	1	104.00	2.00	43.00	59.00	0.00
...................................................................TTTGTGATCGACACTAACGGGT................................................................................................................	22	1	104.00	3.00	45.00	56.00	0.00
...................................................................TCTGTGACCGACACTAACGGGT................................................................................................................	22	1	101.00	3.00	52.00	46.00	0.00
...................................................................TTTATGACCGACACTAACGGGT................................................................................................................	22	1	101.00	1.00	39.00	61.00	0.00
...................................................................TTCGTGACCGACACTAACGGGT................................................................................................................	22	1	101.00	0.00	58.00	43.00	0.00
...................................................................TTTGTGACCGACACTAACGGT.................................................................................................................	21	1	93.00	12.00	44.00	37.00	0.00
...................................................................TTTGTGACCGACACTAACGGAT................................................................................................................	22	1	93.00	1.00	34.00	58.00	0.00
...................................................................TTTGTGACCGTCACTAACGGGT................................................................................................................	22	1	89.00	0.00	59.00	30.00	0.00
...................................................................TTTGTGACCGATACTAACGGGT................................................................................................................	22	1	80.00	3.00	38.00	39.00	0.00
...................................................................TTTCTGACCGACACTAACGGGT................................................................................................................	22	1	79.00	0.00	45.00	34.00	0.00
...................................................................TTTGTGAACGACACTAACGGGT................................................................................................................	22	1	77.00	3.00	34.00	40.00	0.00
...................................................................TTTGTGACCGACACTATCGGGT................................................................................................................	22	1	63.00	0.00	43.00	20.00	0.00
...................................................................TTTGTGACCGACACTAACGGGTTT..............................................................................................................	24	1	62.00	2.00	28.00	32.00	0.00
...................................................................TTTGTGACCGACACTACCGGGC................................................................................................................	22	1	60.00	0.00	30.00	30.00	0.00
...................................................................TTTGTGCCCGACACTAACGGGT................................................................................................................	22	1	60.00	0.00	27.00	33.00	0.00
...................................................................TTTGTGACCGACACTAACGGGCA...............................................................................................................	23	1	58.00	1.00	34.00	23.00	0.00
...................................................................TTTGTGACCGACACTAACGGGAA...............................................................................................................	23	1	57.00	3.00	31.00	23.00	0.00
...................................................................TTTGTGACCGACATTAACGGGT................................................................................................................	22	1	56.00	3.00	29.00	24.00	0.00
...................................................................TTTGTGACCGACACTAACGT..................................................................................................................	20	1	53.00	3.00	31.00	19.00	0.00
...................................................................ATTGTGACCGACACTAACGGGT................................................................................................................	22	1	52.00	1.00	27.00	24.00	0.00
...................................................................TTTGTGAGCGACACTAACGGGT................................................................................................................	22	1	51.00	2.00	30.00	19.00	0.00
...................................................................TTTGTGACCGACTCTAACGGGC................................................................................................................	22	1	51.00	0.00	26.00	25.00	0.00
...................................................................TTTGTGACCGCCACTCACGGGT................................................................................................................	22	1	50.00	0.00	3.00	47.00	0.00
...................................................................TTTGTGACCGACACTAACGCGC................................................................................................................	22	1	50.00	0.00	32.00	18.00	0.00
...................................................................GTTGTGACCGACACTAACGGGT................................................................................................................	22	1	50.00	2.00	34.00	14.00	0.00
...................................................................TTTGTGTCCGACACTAACGGGT................................................................................................................	22	1	49.00	0.00	20.00	29.00	0.00
...................................................................TGGGTGACCGACACTAACGGGT................................................................................................................	22	1	46.00	0.00	32.00	14.00	0.00
...................................................................TTTGTGACCGACACTAAGGGGT................................................................................................................	22	1	46.00	1.00	36.00	9.00	0.00
...................................................................TTTGTGACCGAAACTAACGGGT................................................................................................................	22	1	45.00	0.00	25.00	20.00	0.00
...................................................................TTTGTGACCGACACTCACGGGC................................................................................................................	22	1	45.00	0.00	14.00	31.00	0.00
.....................................................................TGTGACCGACACTAACGGGT................................................................................................................	20	1	45.00	0.00	28.00	17.00	0.00
...................................................................TTTGTGACCGACACTTACGGGT................................................................................................................	22	1	44.00	0.00	19.00	25.00	0.00
...................................................................TTTGTGACCGACACTACCGGGTA...............................................................................................................	23	1	43.00	0.00	14.00	29.00	0.00
...................................................................TTTGTGACCGACACGAACGGGT................................................................................................................	22	1	41.00	1.00	13.00	27.00	0.00
...................................................................TGTGTGACCGACTCTAACGGGT................................................................................................................	22	1	40.00	0.00	20.00	20.00	0.00
...................................................................TTTGTGACCGACACTAACGGGTAG..............................................................................................................	24	1	38.00	2.00	26.00	10.00	0.00
...................................................................TTGGTGACCGACTCTAACGGGT................................................................................................................	22	1	38.00	0.00	23.00	15.00	0.00
...................................................................TGTGTGACCGACACTAACGGGC................................................................................................................	22	1	37.00	0.00	28.00	9.00	0.00
...................................................................TTTGTGACCGACACTAACGGA.................................................................................................................	21	1	34.00	0.00	18.00	16.00	0.00
...................................................................TTTGTGACCGACACTCCCGGGT................................................................................................................	22	1	33.00	0.00	4.00	29.00	0.00
...................................................................TTTGTGACCGACACTCACGGG.................................................................................................................	21	1	33.00	0.00	3.00	30.00	0.00
...................................................................TTTGCGACCGACACTAACGGGC................................................................................................................	22	1	32.00	0.00	29.00	3.00	0.00
...................................................................TTTGTGACCGACACTAACGGTC................................................................................................................	22	1	31.00	0.00	27.00	4.00	0.00
...................................................................TTTGTCACCCACACTAACGGGT................................................................................................................	22	1	31.00	0.00	12.00	19.00	0.00
...................................................................TTGGTGACCGACACTAACGGGC................................................................................................................	22	1	31.00	0.00	21.00	10.00	0.00
...................................................................TTTGTGACCGGCTCTAACGGGT................................................................................................................	22	1	31.00	0.00	14.00	17.00	0.00
...................................................................TTTGTGACCGACACTCACGGGTA...............................................................................................................	23	1	30.00	0.00	2.00	28.00	0.00
...................................................................TTTGTGACCGCCACTACCGGGT................................................................................................................	22	1	30.00	0.00	8.00	22.00	0.00
...................................................................TTTGTGACCGACAATAACGGGC................................................................................................................	22	1	29.00	0.00	17.00	12.00	0.00
...................................................................TTTCTGACCGACTCTAACGGGT................................................................................................................	22	1	28.00	0.00	8.00	20.00	0.00
...................................................................TTTGTGACCGACACTACCGGGA................................................................................................................	22	1	27.00	0.00	15.00	12.00	0.00
...................................................................TTTGTGACCGACTCTCACGGGT................................................................................................................	22	1	27.00	0.00	4.00	23.00	0.00

droGri2

AAAG----TGA--A---ATAGTGCAACGTATACGAGTCC--------TGTGCGTGTTGCAGTTTCGGTTTGTGACCGACACTAACGGGTAGTTAAAGGGCATCC------TCGCATTCTGCTGGC---TTACTCGTTTTTGCGATCACAAATTCTGAAATTGCAACGAAA-ATCAACA---------A--------AACCA	Size	Hit Count	Total Norm	V109 Male body
...................................................................TTTGTGACCGACACTAACGGGT................................................................................................................	22	1	288.00	288.00
...................................................................TTTGTGACCGACACTAACGGGTA...............................................................................................................	23	1	87.00	87.00
...................................................................TTTGTGACCGACACTAAAGGGT................................................................................................................	22	1	4.00	4.00
...................................................................TTTGTGACCGACACTAACGGG.................................................................................................................	21	1	4.00	4.00
...................................................................TTTGTGACCGACACTAACGGGTT...............................................................................................................	23	1	3.00	3.00
...................................................................TTTGTGACCGACACTAACGGGTAT..............................................................................................................	24	1	3.00	3.00
...................................................................TTTGTGACCGACACTAAGGGGT................................................................................................................	22	1	3.00	3.00
...................................................................TTTGTGCCCGACACTAACGGGT................................................................................................................	22	1	2.00	2.00
...................................................................TTTGTGACCGACACTAATGGGT................................................................................................................	22	1	2.00	2.00
...................................................................TTTGTGACCGACACTAACGGGC................................................................................................................	22	1	2.00	2.00
...................................................................TTTGTAACCGACACTAACGGGT................................................................................................................	22	1	2.00	2.00
...................................................................TTCGTGACCGACACTAACGGGT................................................................................................................	22	1	2.00	2.00
...................................................................CTTGTGACCGACACTAACGGGTA...............................................................................................................	23	1	1.00	1.00
...................................................................TTTGTGACCGACACTAACAGGTA...............................................................................................................	23	1	1.00	1.00
...................................................................TTTGTGACTGACACTAACGGGT................................................................................................................	22	1	1.00	1.00
...................................................................TTTGTGACCGACACTAAAGGGTA...............................................................................................................	23	1	1.00	1.00
....................................................................................................................................TCGTTTTTGCGATCAAAAATTC...............................................	22	1	1.00	1.00
...................................................................TCTGTGACCGACACTAACGGGT................................................................................................................	22	1	1.00	1.00
...................................................................TTTGTGACCGACACTAACGG..................................................................................................................	20	1	1.00	1.00
.....................................................................TGTGACCGACACTAACGGGT................................................................................................................	20	1	1.00	1.00
...................................................................TTTGGGACCGACACTAACGGGTA...............................................................................................................	23	1	1.00	1.00
...................................................................TTTGTGACCGACACTAACGCGT................................................................................................................	22	1	1.00	1.00
...................................................................TTAGTGACCGACACTAACGGGT................................................................................................................	22	1	1.00	1.00
...................................................................TTTGTGACCGACACTAACGGGTCT..............................................................................................................	24	1	1.00	1.00
...................................................................TTTGTGACCGACACTAACGGAT................................................................................................................	22	1	1.00	1.00
...................................................................TTGGTGACCGACACTAACAGGT................................................................................................................	22	1	1.00	1.00
...................................................................TTTGTGACCGACACTAGCGGGTA...............................................................................................................	23	1	1.00	1.00
...................................................................TCTGTGACCGACACTAACGGGTA...............................................................................................................	23	1	1.00	1.00
...................................................................TTTCTGACCGACACTAACGGGT................................................................................................................	22	1	1.00	1.00
...................................................................TTTGTGACCGAAACTAACGGGTA...............................................................................................................	23	1	1.00	1.00
...................................................................................................................................CTCGTTTTTGCGATCACAAATC................................................	22	1	1.00	1.00
...................................................................TTTGTGACCGxxACTAACGGGT................................................................................................................	20	1	1.00	1.00
...................................................................TTTGGGACCGACACTAACGGGT................................................................................................................	22	1	1.00	1.00
...................................................................TTTGTGACAGACACTAACGGGTA...............................................................................................................	23	1	1.00	1.00
...................................................................TTTGTAACCGACACTAACGGGTAT..............................................................................................................	24	1	1.00	1.00
...................................................................TTTGTGACCGACAGTAACGGGTA...............................................................................................................	23	1	1.00	1.00
....................................................................TTTTGACCGACACTAACGGGTA...............................................................................................................	22	1	1.00	1.00
.....................................................................................................................................CGTTTTTGCGATCACAAATT................................................	20	1	1.00	1.00
...................................................................TTTGTGACCGACACTAACGGGA................................................................................................................	22	1	1.00	1.00
....................................................................TTTTGACCGACACTAACGGGT................................................................................................................	21	1	1.00	1.00
.....................................................................TTTGACCGACACTAACGGGT................................................................................................................	20	1	1.00	1.00
...................................................................TTTGTTACCGACACTAACGGGT................................................................................................................	22	1	1.00	1.00

Generated: 04/20/2012 at 05:18:07 EDT

dme-mir-274

chr3L:11650018-11650117 +

Known_mirbase

antisense_to_intron

20-way Fast Statistical Aligner (FSA) re-alignment

Visually pleasing best hits from LASTZ and MAF

Legend

Re-alignment after removal of non-confident orthologs

20-way Secondary Structure

Small RNA-seq read pileup