dme-mir-263a- Best orthologs

dme-mir-263a	chr2L:11953410-11953503 -	Known_mirbase
[View on miRBase]	[View on UCSC Genome Browser {Cornell Mirror}]	intergenic

Legend:

   mature strand at position 11953463-11953486
   star strand at position 11953424-11953445
   mutations
   read mismatches

20-way Fast Statistical Aligner (FSA) re-alignment

Visually pleasing best hits from LASTZ and MAF

Species	Coordinate	Source	Confidence	Alignment
dm3	chr2L:11953395-11953518 -		1	CCA--TCTAA--------T-----------------G-----------------GTATATAGATCTCGGCACAGTTAATGGCACTGGAAGAATTCACGGGGTAATTTTTATACA-ACCCGTGATCTCTTAGTGGCATCTATGGTGCGAGAATAAA---------ACATCCAAA--AT----GAA
droSim1	chr2L:11760450-11760573 -	LASTZ	1	CCA--TCTAA--------T-----------------G-----------------GTATATAGATCTCGGCACAGTTAATGGCACTGGAAGAATTCACGGGGTAATTTTTATACA-ACCCGTGATCTCTTAGTGGCATCTATGGTGCGAGAATAAA---------ACATCCAAA--AT----GAA
droSec1	super_16:152684-152807 -	LASTZ	1	CCT--TCTAA--------T-----------------G-----------------GTATATAGATCTCGACACAGTTAATGGCACTGGAAGAATTCACGGGGTAATTTTTATACA-ACCCGTGATCTCTTAGTGGCATCTATGGTGCGAGAATAAA---------ACATCCAAA--GT----GAA
droYak2	chr2L:8374818-8374940 -	LASTZ	1	CCA--GCTGC--------T-----------------G-----------------GTATATAGATCTCGGCACAGTTAATGGCACTGGAAGAATTCACGGGGTACTTTTTATACA-ACCCGTGATCTCTTAGTGGCATCTATGGTGCGAGAATAAA---------ACATCCAAA---T----GAA
droEre2	scaffold_4929:13456433-13456555 +	LASTZ	1	CCA--TCTGA--------T-----------------G-----------------GTGTATAGATCTCGGCACAGTTAATGGCACTGGAAGAATTCACGGGGTACTTTTGATACA-ACCCGTGATCTCTTAGTGGCATCTATGGTGCGAGAATAAA---------ACATCCGAA---T----GAA
droEug1	scf7180000409122:345832-345952 -	LASTZ	4	GAA--TCTTG--------T-----------------GAAG-------------TGTTCAATCATCTCGGCACAGTTAATGGCACTGGAAGAATTCACGGGGTAATTTCTATACA-ACCCGTGATCTCTTAGTGGCATCTATGGTGCGGGATTAAA---------ACATCCA-------------
droBia1	scf7180000302422:1067961-1068074 +	LASTZ	4	CGA--T------------------------------GAA---------------GT-----AATCTCGGCACAGTTAATGGCACTGGAAGAATTCACGGGGTGATTT-TATACA-ACCCGTGATCTCTTAGTGGCATCTATGGTGCGGGAACAAA---------ACAACCACA---T----GAA
droTak1	scf7180000415863:297062-297179 +	LASTZ	4	ATT--TTCAA--------T-----------------C--G-------------TGT--A---ATCTCGGCACAGTTAATGGCACTGGAAGAATTCACGGGGTAATTTTTATACA-ACCCGTGATCTCTTAGTGGCATTTATGGTGCGGGAATAAA---------ACATCAAAA---------AG
droEle1	scf7180000491028:3219004-3219131 +	LASTZ	4	CTAGTTCTTG--------------------------AAAG-------------TGTAACTCCATCTCGGCACAGTTAATGGCACTGGAAGAATTCACGGGGTAATTTTCATACC-ACCCGTGATCTCTTAGTGGCATCTATGGTGCGGGAATAAA---------ACATCAAAA---T----CAA
droRho1	scf7180000779410:469683-469808 -	LASTZ	4	CAA--TCTTT--------------------------AAAG-------------TGTTACTACATCTCGGCACAGTTAATGGCACTGGAAGAATTCACGGGGTAATTTCTATACC-ACCCGTGATCTCTTAGTGGCATCTATGGTGCGGGAATAAA---------ACATCCAAA---T----GAA
droFic1	scf7180000453936:232048-232166 +	LASTZ	4	TAA--TCTTG--------A-----------------CAA---------------GTCACTCCATCTCGGCACAGTTAATGGCACTGGAAGAATTCACGGGGTAATTTCTATACA-ACCCGTGATCTCTTAGTGGCATCTATGGTGCGGGAATAAG---------ACATC-------------AA
droKik1	scf7180000301476:605762-605889 +	LASTZ	4	AGA--TCTTG--------C-----------------AGAG-------------TGTTAAACCATCTCGGCACAGTTAATGGCACTGGAAGAATTCACGGGGTTATTTCTAAACA-ACCCGTGATCTCTTAGTGGCATCTATGGTGCGGGAATTGA---------ACATCCAAT--CA----GAA
droAna3	scaffold_12943:2289700-2289819 +	LASTZ	1	ACA--A------------------------------------------------GTTTCTCCATCTCGGCACAGTTAATGGCACTGGAAGAATTCACGGGGTAATTTCTATACA-ACCCGTGATCTCTTAGTGGCATCTATGGTGCGGGATTAAA---------ACATCAAAAAAGT----GA-
droBip1	scf7180000396728:1008481-1008601 -	LASTZ	4	------------------------------------------------------GTTTCTCCATCTCGGCACAGTTAATGGCACTGGAAGAATTCACGGGGTAATTTCTATACA-ACCCGTGATCTCTTAGTGGCATCTATGGTGCGGGATTAAA---------ACATCAAAAGAGTGAATACA
dp4	chr4_group3:7322788-7322905 +	LASTZ	1	ACT--CATAA-----------------------------G-------------TGTATCCACATCCCGGCACAGTTAATGGCACTGGAAGAATTCACGGGGTT-TTTCAATACA-ACCCGTGATCTCTTAGTGGCATCTATGGTGCGGGACT-------------CATCTCAA---T----CAA
droPer1	super_1:8768281-8768398 +	LASTZ	1	ACT--CATAA-----------------------------G-------------TGTATCCACATCCCGGCACAGTTAATGGCACTGGAAGAATTCACGGGGTT-TTTCAATACA-ACCCGTGATCTCTTAGTGGCATCTATGGTGCGGGACT-------------CATCTCAA---T----CAA
droWil1	scaffold_180708:2657721-2657853 -	LASTZ	1	CTT--TCGAT--------T-----------------G-----------------GT-TCTGCATCTCGGCACAGTTAATGGCACTGGAAGAATTCACGGGGTTTTTATTTAACACACCCGTGATCTCTTAGTGGCATCTATGGTGCGGGATTTAAGCATACAGAACATCCGAC--AT----CAA
droVir3	scaffold_12963:13235091-13235216 +	LASTZ	1	CTT--AATGT--------T-----------------G-CT-------------TGC-TCTGCATCTCGGCACAGTTAATGGCACTGGAAGAATTCACGGGGTTTTTATA--ACACGCCCGTGATCTCTTAGTGGCATCTATGGTGCGGGA-TATT---------ACGTACAACAAAT----GAA
droMoj3	scaffold_6500:16780722-16780842 +	LASTZ	1	TTT--TCG-T-------------------------------------------TGTT-TCGCATCTCGGCACAGTTAATGGCACTGGAAGAATTCACGGGGTTTTT-CTA-ACACGCCCGTGATCTCTTAGTGGCATCTATGGTGCGGGA-TATT---------ACGTTCAACAACT----GAA
droGri2	scaffold_15126:6621358-6621517 -	LASTZ	1	CTA--CCTGAATTTCTGCTGGGTAAGTTATTTTTTTCAAGTGATTTTTCTTGTTGT-TCTGCATCTCGGCACAGTTAATGGCACTGGAAGAATTCACGGGGTTATTTTAACAC--GCCCGTGATCTCTTAGTGGCATCTATGGTGCGGGA-TATT---------ACGTGCAGA---------AA

Legend

0- The ortholog is absent. A better synthenic sequence candidate could not be found.
1- Reads w/ good pileup on mature and star strand & folds into hairpin structure.
2- Reads w/ good pileup on mature and star strand BUT does not fold into hairpin structure.
3- Sporadic reads & folds into a hairpin structure.
4- No reads but folds into a hairpin structure.
5- Ortholog is confident but miRNA appears absent (no reads and does not fold into a hairpin)

Re-alignment after removal of non-confident orthologs

Species	Alignment
dm3	CCA--TCTAA--------T-----------------G-----------------GTATATAGATCTCGGCACAGTTAATGGCACTGGAAGAATTCACGGGGTAATTTTTATACA-ACCCGTGATCTCTTAGTGGCATCTATGGTGCGAGAATAAA---------ACATCCAAA--AT----GAA
droSim1	CCA--TCTAA--------T-----------------G-----------------GTATATAGATCTCGGCACAGTTAATGGCACTGGAAGAATTCACGGGGTAATTTTTATACA-ACCCGTGATCTCTTAGTGGCATCTATGGTGCGAGAATAAA---------ACATCCAAA--AT----GAA
droSec1	CCT--TCTAA--------T-----------------G-----------------GTATATAGATCTCGACACAGTTAATGGCACTGGAAGAATTCACGGGGTAATTTTTATACA-ACCCGTGATCTCTTAGTGGCATCTATGGTGCGAGAATAAA---------ACATCCAAA--GT----GAA
droYak2	CCA--GCTGC--------T-----------------G-----------------GTATATAGATCTCGGCACAGTTAATGGCACTGGAAGAATTCACGGGGTACTTTTTATACA-ACCCGTGATCTCTTAGTGGCATCTATGGTGCGAGAATAAA---------ACATCCAAA---T----GAA
droEre2	CCA--TCTGA--------T-----------------G-----------------GTGTATAGATCTCGGCACAGTTAATGGCACTGGAAGAATTCACGGGGTACTTTTGATACA-ACCCGTGATCTCTTAGTGGCATCTATGGTGCGAGAATAAA---------ACATCCGAA---T----GAA
droEug1	GAA--TCTTG--------T-----------------GAAG-------------TGTTCAATCATCTCGGCACAGTTAATGGCACTGGAAGAATTCACGGGGTAATTTCTATACA-ACCCGTGATCTCTTAGTGGCATCTATGGTGCGGGATTAAA---------ACATCCA-------------
droBia1	CGA--T------------------------------GAA---------------GT-----AATCTCGGCACAGTTAATGGCACTGGAAGAATTCACGGGGTGATTT-TATACA-ACCCGTGATCTCTTAGTGGCATCTATGGTGCGGGAACAAA---------ACAACCACA---T----GAA
droTak1	ATT--TTCAA--------T-----------------C--G-------------TGT--A---ATCTCGGCACAGTTAATGGCACTGGAAGAATTCACGGGGTAATTTTTATACA-ACCCGTGATCTCTTAGTGGCATTTATGGTGCGGGAATAAA---------ACATCAAAA---------AG
droEle1	CTAGTTCTTG--------------------------AAAG-------------TGTAACTCCATCTCGGCACAGTTAATGGCACTGGAAGAATTCACGGGGTAATTTTCATACC-ACCCGTGATCTCTTAGTGGCATCTATGGTGCGGGAATAAA---------ACATCAAAA---T----CAA
droRho1	CAA--TCTTT--------------------------AAAG-------------TGTTACTACATCTCGGCACAGTTAATGGCACTGGAAGAATTCACGGGGTAATTTCTATACC-ACCCGTGATCTCTTAGTGGCATCTATGGTGCGGGAATAAA---------ACATCCAAA---T----GAA
droFic1	TAA--TCTTG--------A-----------------CAA---------------GTCACTCCATCTCGGCACAGTTAATGGCACTGGAAGAATTCACGGGGTAATTTCTATACA-ACCCGTGATCTCTTAGTGGCATCTATGGTGCGGGAATAAG---------ACATC-------------AA
droKik1	AGA--TCTTG--------C-----------------AGAG-------------TGTTAAACCATCTCGGCACAGTTAATGGCACTGGAAGAATTCACGGGGTTATTTCTAAACA-ACCCGTGATCTCTTAGTGGCATCTATGGTGCGGGAATTGA---------ACATCCAAT--CA----GAA
droAna3	ACA--A------------------------------------------------GTTTCTCCATCTCGGCACAGTTAATGGCACTGGAAGAATTCACGGGGTAATTTCTATACA-ACCCGTGATCTCTTAGTGGCATCTATGGTGCGGGATTAAA---------ACATCAAAAAAGT----GA-
droBip1	------------------------------------------------------GTTTCTCCATCTCGGCACAGTTAATGGCACTGGAAGAATTCACGGGGTAATTTCTATACA-ACCCGTGATCTCTTAGTGGCATCTATGGTGCGGGATTAAA---------ACATCAAAAGAGTGAATACA
dp4	ACT--CATAA-----------------------------G-------------TGTATCCACATCCCGGCACAGTTAATGGCACTGGAAGAATTCACGGGGTT-TTTCAATACA-ACCCGTGATCTCTTAGTGGCATCTATGGTGCGGGACT-------------CATCTCAA---T----CAA
droPer1	ACT--CATAA-----------------------------G-------------TGTATCCACATCCCGGCACAGTTAATGGCACTGGAAGAATTCACGGGGTT-TTTCAATACA-ACCCGTGATCTCTTAGTGGCATCTATGGTGCGGGACT-------------CATCTCAA---T----CAA
droWil1	CTT--TCGAT--------T-----------------G-----------------GT-TCTGCATCTCGGCACAGTTAATGGCACTGGAAGAATTCACGGGGTTTTTATTTAACACACCCGTGATCTCTTAGTGGCATCTATGGTGCGGGATTTAAGCATACAGAACATCCGAC--AT----CAA
droVir3	CTT--AATGT--------T-----------------G-CT-------------TGC-TCTGCATCTCGGCACAGTTAATGGCACTGGAAGAATTCACGGGGTTTTTATA--ACACGCCCGTGATCTCTTAGTGGCATCTATGGTGCGGGA-TATT---------ACGTACAACAAAT----GAA
droMoj3	TTT--TCG-T-------------------------------------------TGTT-TCGCATCTCGGCACAGTTAATGGCACTGGAAGAATTCACGGGGTTTTT-CTA-ACACGCCCGTGATCTCTTAGTGGCATCTATGGTGCGGGA-TATT---------ACGTTCAACAACT----GAA
droGri2	CTA--CCTGAATTTCTGCTGGGTAAGTTATTTTTTTCAAGTGATTTTTCTTGTTGT-TCTGCATCTCGGCACAGTTAATGGCACTGGAAGAATTCACGGGGTTATTTTAACAC--GCCCGTGATCTCTTAGTGGCATCTATGGTGCGGGA-TATT---------ACGTGCAGA---------AA

20-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droEug1	droBia1	droTak1	droEle1	droRho1	droFic1	droKik1	droAna3	droBip1	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image

Small RNA-seq read pileup

Species

Alignment

droSim1

CCA--TCTAA--------T-----------------G-----------------GTATATAGATCTCGGCACAGTTAATGGCACTGGAAGAATTCACGGGGTAATTTTTATACA-ACCCGTGATCTCTTAGTGGCATCTATGGTGCGAGAATAAA---------ACATCCAAA--AT----GAA	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
............................................................................AATGGCACTGGAAGAATTCACGGG....................................................................................	24	1	417000.00	24604.00	130809.00	132054.00	129533.00
............................................................................AATGGCACTGGAAGAATTCACGG.....................................................................................	23	1	119135.00	1977.00	63939.00	42585.00	10634.00
............................................................................AATGGCACTGGAAGAATTCACG......................................................................................	22	1	20979.00	1516.00	12884.00	5475.00	1104.00
............................................................................AATGGCACTGGAAGAATTCACGGGA...................................................................................	25	1	20806.00	154.00	11636.00	6438.00	2578.00
............................................................................AATGGCACTGGAAGAATTCAC.......................................................................................	21	1	13285.00	1804.00	8852.00	1897.00	732.00
............................................................................AATGGCACTGGAAGAATTC.........................................................................................	19	1	12164.00	24.00	9501.00	2565.00	74.00
......................................................................................................................CGTGATCTCTTAGTGGCATCTA............................................	22	1	3699.00	150.00	358.00	102.00	3089.00
............................................................................AATGGCACTGGAAGAATTCACGGGT...................................................................................	25	1	3558.00	318.00	1709.00	1338.00	193.00
............................................................................AATGGCACTGGAAGAATTCACGGGG...................................................................................	25	1	2726.00	3.00	1284.00	953.00	486.00
............................................................................AATGGCACTGGAAGAATTCACGGGAA..................................................................................	26	1	2067.00	1.00	1146.00	685.00	235.00
............................................................................AATGGCACTGGAAGAATTCA........................................................................................	20	1	1515.00	151.00	1032.00	301.00	31.00
............................................................................AATTGCACTGGAAGAATTCACGGG....................................................................................	24	1	1181.00	2.00	355.00	205.00	619.00
............................................................................AATGGCACTGTAAGAATTCACGGG....................................................................................	24	1	1028.00	4.00	382.00	207.00	435.00
.............................................................................AATGCACTGGAAGAATTCACGGG....................................................................................	23	1	734.00	0.00	220.00	129.00	385.00
......................................................................................................................CGTGATCTCTTAGTGGCATCT.............................................	21	1	679.00	31.00	156.00	37.00	455.00
............................................................................AATGGCACTGGAAGAATTCACGGC....................................................................................	24	1	634.00	27.00	227.00	205.00	175.00
............................................................................AATGTCACTGGAAGAATTCACGGG....................................................................................	24	1	610.00	3.00	182.00	128.00	297.00
................................................................................GCACTGGAAGAATTCACGGG....................................................................................	20	1	555.00	3.00	180.00	160.00	212.00
............................................................................AATGGCACTGGAAGAATTCACGGA....................................................................................	24	1	531.00	9.00	232.00	188.00	102.00
............................................................................AATCGCACTGGAAGAATTCACGGG....................................................................................	24	1	525.00	4.00	146.00	95.00	280.00
.............................................................................ATGGCACTGGAAGAATTCACGGG....................................................................................	23	1	513.00	19.00	180.00	193.00	121.00
............................................................................AATGGCACTGGAAGAATTCACGGGAT..................................................................................	26	1	488.00	0.00	293.00	176.00	19.00
............................................................................AATGGCACTGGAAGAATTCACGGGC...................................................................................	25	1	430.00	17.00	240.00	138.00	35.00
............................................................................AGTGGCACTGGAAGAATTCACGGG....................................................................................	24	1	428.00	20.00	145.00	133.00	130.00
............................................................................AATGGCACTGGAAGAATTCACGGGTT..................................................................................	26	1	427.00	9.00	213.00	203.00	2.00
............................................................................AATGGCACTGCAAGAATTCACGGG....................................................................................	24	1	401.00	14.00	108.00	90.00	189.00
............................................................................AATGGCGCTGGAAGAATTCACGGG....................................................................................	24	1	337.00	48.00	105.00	105.00	79.00
............................................................................AATGTCACTGGAAGAATTCAC.......................................................................................	21	1	324.00	0.00	259.00	35.00	30.00
............................................................................GATGGCACTGGAAGAATTCACGGG....................................................................................	24	1	315.00	26.00	79.00	111.00	99.00
............................................................................AATGGCACTGGAAGAATTCACGGT....................................................................................	24	1	303.00	20.00	146.00	106.00	31.00
............................................................................AATTGCACTGGAAGAATTCACGG.....................................................................................	23	1	291.00	0.00	183.00	54.00	54.00
............................................................................AATAGCACTGGAAGAATTCACGGG....................................................................................	24	1	290.00	21.00	76.00	80.00	113.00
............................................................................AATGGCACTGGAAGAATTCGCGGG....................................................................................	24	1	284.00	37.00	77.00	93.00	77.00
............................................................................AATGGCACTTGAAGAATTCACGGG....................................................................................	24	1	282.00	3.00	84.00	105.00	90.00
............................................................................AATGCCACTGGAAGAATTCACGGG....................................................................................	24	1	280.00	7.00	83.00	49.00	141.00
............................................................................AATGGCACTGGAAGAATTCACGGAA...................................................................................	25	1	276.00	0.00	193.00	76.00	7.00
............................................................................AATGGCACTGGAAGCATTCACGGG....................................................................................	24	1	259.00	230.00	9.00	7.00	13.00
............................................................................AATGTCACTGGAAGAATTCACG......................................................................................	22	1	249.00	0.00	197.00	36.00	16.00
............................................................................AATGGCACTGGAAGGATTCACGGG....................................................................................	24	1	235.00	96.00	50.00	36.00	53.00
............................................................................AATGGCACTGGCAGAATTCACGGG....................................................................................	24	1	233.00	207.00	10.00	5.00	11.00
............................................................................AATGGCACTGGAAGAATTCACTGG....................................................................................	24	1	228.00	94.00	42.00	46.00	46.00
............................................................................AATGGCACCGGAAGAATTCACGGG....................................................................................	24	1	223.00	19.00	63.00	75.00	66.00
.............................................................................ATGGCACTGGAAGAATTCACGG.....................................................................................	22	1	221.00	0.00	135.00	83.00	3.00
............................................................................AATGGCACTGGAAGAATTCACAGG....................................................................................	24	1	212.00	32.00	62.00	38.00	80.00
............................................................................AATGGCACTGAAAGAATTCACGGG....................................................................................	24	1	209.00	7.00	67.00	67.00	68.00
............................................................................AACGGCACTGGAAGAATTCACGGG....................................................................................	24	1	204.00	30.00	55.00	55.00	64.00
............................................................................AATGGCACTGGAAGAATTCACCGG....................................................................................	24	1	203.00	91.00	38.00	13.00	61.00
............................................................................AATGGTACTGGAAGAATTCACGGG....................................................................................	24	1	203.00	10.00	57.00	51.00	85.00
............................................................................AATGGCACTGGAAGAATTCCCGGG....................................................................................	24	1	201.00	61.00	30.00	85.00	25.00
............................................................................AATGGCACTGGGAGAATTCACGGG....................................................................................	24	1	186.00	93.00	28.00	22.00	43.00
............................................................................AATTGCACTGGAAGAATTCACG......................................................................................	22	1	185.00	0.00	128.00	37.00	20.00
............................................................................AATGGCACTGGAAGAATTTACGGG....................................................................................	24	1	175.00	20.00	48.00	65.00	42.00
............................................................................AATGACACTGGAAGAATTCACGGG....................................................................................	24	1	167.00	13.00	45.00	47.00	62.00
............................................................................AATGGCACTGGAGGAATTCACGGG....................................................................................	24	1	158.00	43.00	41.00	37.00	37.00
............................................................................AATGGCACTGGAAGAATTCACGT.....................................................................................	23	1	157.00	1.00	111.00	44.00	1.00
............................................................................AATGGCACTGGAAGAATTCATGGG....................................................................................	24	1	155.00	18.00	50.00	47.00	40.00
............................................................................AATGGCACTxGAAGAATTCACGGG....................................................................................	23	1	154.00	3.00	70.00	28.00	53.00
............................................................................AATGGCACTGGAxxAATTCACGGG....................................................................................	22	1	154.00	0.00	44.00	43.00	67.00
............................................................................AATGGCACTGGAAGAATT..........................................................................................	18	1	152.00	1.00	106.00	41.00	4.00
............................................................................AATGGCACTGGAAGAATTCACGTG....................................................................................	24	1	149.00	61.00	18.00	52.00	18.00
................................................................................GCACTGGAAGAATTCACGG.....................................................................................	19	1	149.00	0.00	73.00	56.00	20.00
............................................................................AATGGCACTGGAAGAATTCACGA.....................................................................................	23	1	148.00	3.00	95.00	49.00	1.00
............................................................................AATGGCACTGGAAAAATTCACGGG....................................................................................	24	1	146.00	6.00	34.00	53.00	53.00
............................................................................AATTGCACTGGAAGAATTCAC.......................................................................................	21	1	145.00	0.00	110.00	13.00	22.00
............................................................................AATGGCACTCGAAGAATTCACGGG....................................................................................	24	1	142.00	13.00	44.00	27.00	58.00
............................................................................AATTGCACTGGAAGAATTCACGGGA...................................................................................	25	1	142.00	0.00	68.00	29.00	45.00
.............................................................................AATGCACTGGAAGAATTCACG......................................................................................	21	1	140.00	0.00	106.00	25.00	9.00
............................................................................AATGTCACTGGAAGAATTCACGG.....................................................................................	23	1	140.00	1.00	98.00	24.00	17.00
............................................................................AATGGCACTGGAAGAATTCACGCG....................................................................................	24	1	138.00	101.00	12.00	13.00	12.00
............................................................................AATGGCACTAGAAGAATTCACGGG....................................................................................	24	1	138.00	19.00	38.00	41.00	40.00
............................................................................AATGGCACTGGAAGAATTCACGC.....................................................................................	23	1	137.00	4.00	82.00	44.00	7.00
............................................................................AATGGCACTGGAAGAATTCATGG.....................................................................................	23	1	135.00	2.00	61.00	66.00	6.00
............................................................................AATGGCACTGGAAGAATTAACGGG....................................................................................	24	1	134.00	27.00	29.00	60.00	18.00
.................................................................................CACTGGAAGAATTCACGGG....................................................................................	19	1	134.00	3.00	35.00	48.00	48.00
......................................................................................................................CGTGATCTCTTAGTGGCATC..............................................	20	1	132.00	1.00	70.00	12.00	49.00
............................................................................AATGGCACTGTAAGAATTCACGG.....................................................................................	23	1	132.00	0.00	92.00	27.00	13.00
............................................................................AATGGCATTGGAAGAATTCACGGG....................................................................................	24	1	132.00	16.00	43.00	33.00	40.00
............................................................................AATGGAACTGGAAGAATTCACGGG....................................................................................	24	1	131.00	24.00	44.00	21.00	42.00
............................................................................AATGGGACTGGAAGAATTCACGGG....................................................................................	24	1	129.00	9.00	54.00	31.00	35.00
............................................................................AGTGGCACTGGAAGAATTCACGG.....................................................................................	23	1	125.00	5.00	67.00	48.00	5.00
............................................................................AATGGCACTGGAAGAATTCACGAG....................................................................................	24	1	118.00	15.00	35.00	32.00	36.00
............................................................................AATGGCACTGGAAGAGTTCACGGG....................................................................................	24	1	115.00	32.00	21.00	34.00	28.00
.............................................................................AATGCACTGGAAGAATTCACGG.....................................................................................	22	1	115.00	0.00	64.00	23.00	28.00
............................................................................AATGCCACTGGAAGAATTCAC.......................................................................................	21	1	113.00	0.00	87.00	16.00	10.00
............................................................................AATGGCACTGGAAGAATTCACA......................................................................................	22	1	109.00	6.00	77.00	22.00	4.00
............................................................................AATCGCACTGGAAGAATTCACGG.....................................................................................	23	1	108.00	0.00	66.00	27.00	15.00
...........................................................................CAATGGCACTGGAAGAATTCACGGG....................................................................................	25	1	107.00	22.00	24.00	25.00	36.00
............................................................................AATxGCACTGGAAGAATTCACGGGA...................................................................................	24	1	104.00	0.00	66.00	20.00	18.00
............................................................................AATGGCACTGGAAGAATTCAAGGG....................................................................................	24	1	103.00	51.00	11.00	24.00	17.00
............................................................................AATGGCACTGGAAGAACTCACGGG....................................................................................	24	1	101.00	21.00	23.00	23.00	34.00
............................................................................AAGGGCACTGGAAGAATTCACGGG....................................................................................	24	1	99.00	77.00	8.00	5.00	9.00
............................................................................AATGGCACTGGAAGAATTCACGGGAAA.................................................................................	27	1	97.00	0.00	27.00	37.00	33.00
............................................................................AATGGCACTGGAAGAATCCACGGG....................................................................................	24	1	96.00	19.00	25.00	31.00	21.00
............................................................................AATGGCACCGGAAGAATTCACGG.....................................................................................	23	1	95.00	0.00	54.00	29.00	12.00
.................................................................................CACTGGAAGAATTCACGG.....................................................................................	18	1	94.00	0.00	38.00	43.00	13.00
............................................................................AATGGCAATGGAAGAATTCACGGG....................................................................................	24	1	94.00	61.00	9.00	20.00	4.00
............................................................................AATGGCACTGGAAGAATTCGCGG.....................................................................................	23	1	92.00	5.00	45.00	38.00	4.00
............................................................................AATGGCGCTGGAAGAATTCACGG.....................................................................................	23	1	91.00	2.00	44.00	38.00	7.00
............................................................................AATGGCACTGGAAGAATTCACGGGTA..................................................................................	26	1	91.00	0.00	53.00	29.00	9.00
............................................................................AATGGCACTGGAAGAATTGACGGG....................................................................................	24	1	87.00	11.00	15.00	29.00	32.00
............................................................................GATGGCACTGGAAGAATTCACGG.....................................................................................	23	1	86.00	2.00	49.00	30.00	5.00

droSec1

CCT--TCTAA--------T-----------------G-----------------GTATATAGATCTCGACACAGTTAATGGCACTGGAAGAATTCACGGGGTAATTTTTATACA-ACCCGTGATCTCTTAGTGGCATCTATGGTGCGAGAATAAA---------ACATCCAAA--GT----GAA	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
............................................................................AATGGCACTGGAAGAATTCACGGG....................................................................................	24	1	220636.00	81722.00	109279.00	29635.00
............................................................................AATGGCACTGGAAGAATTCACG......................................................................................	22	1	82806.00	51851.00	8490.00	22465.00
............................................................................AATGGCACTGGAAGAATTCACGG.....................................................................................	23	1	72929.00	47534.00	11102.00	14293.00
............................................................................AATGGCACTGGAAGAATTCAC.......................................................................................	21	1	59455.00	32658.00	3468.00	23329.00
............................................................................AATGGCACTGGAAGAATTCA........................................................................................	20	1	25878.00	14597.00	622.00	10659.00
............................................................................AATGGCACTGGAAGAATTCACGGGT...................................................................................	25	1	15845.00	10752.00	2011.00	3082.00
............................................................................AATGGCACTGGAAGAATTC.........................................................................................	19	1	7070.00	2516.00	64.00	4490.00
............................................................................AATGGCACTGGAAGAATTCACGGGA...................................................................................	25	1	4517.00	2375.00	1043.00	1099.00
............................................................................AATGGCACTGGAAGAATTCACGGT....................................................................................	24	1	2135.00	1493.00	146.00	496.00
............................................................................AATGGCACTGGAAGAATTCACGGGTT..................................................................................	26	1	1268.00	1011.00	33.00	224.00
............................................................................AATGGCACTGGAAGAATTCACGT.....................................................................................	23	1	1118.00	726.00	9.00	383.00
......................................................................................................................CGTGATCTCTTAGTGGCATCTA............................................	22	1	970.00	81.00	843.00	46.00
............................................................................AATGGCACTGGAAGAATTTACGGG....................................................................................	24	1	804.00	440.00	348.00	16.00
............................................................................AATGGCACTGGAAGAATTAACGGG....................................................................................	24	1	733.00	650.00	35.00	48.00
.............................................................................ATGGCACTGGAAGAATTCACGGG....................................................................................	23	1	690.00	129.00	498.00	63.00
............................................................................AATGGCACTGGAAGAATTCACA......................................................................................	22	1	656.00	354.00	20.00	282.00
............................................................................AATGGCACTGGAAGAATTCATGGG....................................................................................	24	1	512.00	58.00	438.00	16.00
............................................................................AATGGCATTGGAAGAATTCACGGG....................................................................................	24	1	461.00	32.00	414.00	15.00
............................................................................AATGGCACTGGAAGAATTAACG......................................................................................	22	1	438.00	398.00	2.00	38.00
............................................................................AATGGCACTGGAAGAATTAACGG.....................................................................................	23	1	426.00	403.00	4.00	19.00
............................................................................AATGGTACTGGAAGAATTCACGGG....................................................................................	24	1	418.00	33.00	373.00	12.00
............................................................................AATGGCACTGGAAGAATTCACGGGC...................................................................................	25	1	411.00	161.00	196.00	54.00
............................................................................AATGGCACTGGAGGAATTCACGGG....................................................................................	24	1	403.00	96.00	284.00	23.00
............................................................................AATGGCACTGGAAGAATTCACT......................................................................................	22	1	387.00	234.00	5.00	148.00
............................................................................AATGGCACTGGAAGAATTCACGGA....................................................................................	24	1	369.00	204.00	95.00	70.00
............................................................................AATGGCACTGGAAGAATTCACGGC....................................................................................	24	1	357.00	207.00	109.00	41.00
............................................................................AATGGCACTGGAAGAATTCACGGTT...................................................................................	25	1	356.00	286.00	2.00	68.00
............................................................................AATGGCACTGGAAGAATT..........................................................................................	18	1	341.00	25.00	12.00	304.00
............................................................................AATGGCACTGGAAGAATTTACGG.....................................................................................	23	1	333.00	277.00	44.00	12.00
............................................................................AATGGCACTGGAAGAATTAAC.......................................................................................	21	1	321.00	280.00	1.00	40.00
............................................................................AATGGCACTGGAAGAATTCACGGGTTT.................................................................................	27	1	320.00	297.00	5.00	18.00
.............................................................................AATGCACTGGAAGAATTCACGGG....................................................................................	23	1	301.00	76.00	183.00	42.00
............................................................................AATGGCACTGGAAGAATTGACGGG....................................................................................	24	1	299.00	277.00	18.00	4.00
............................................................................AATGGCACTGGAAGAATTTACG......................................................................................	22	1	291.00	271.00	13.00	7.00
............................................................................AATGGCACTGGAAGAATTCCCGGG....................................................................................	24	1	276.00	101.00	133.00	42.00
............................................................................AATTGCACTGGAAGAATTCACGGG....................................................................................	24	1	267.00	72.00	141.00	54.00
............................................................................AATGGCACTGGAAGACTTCACGGG....................................................................................	24	1	266.00	123.00	113.00	30.00
............................................................................AATGGCGCTGGAAGAATTCACGGG....................................................................................	24	1	260.00	69.00	168.00	23.00
............................................................................AATGTCACTGGAAGAATTCACGGG....................................................................................	24	1	233.00	79.00	106.00	48.00
............................................................................AATGGCACCGGAAGAATTCACGGG....................................................................................	24	1	232.00	87.00	121.00	24.00
............................................................................AACGGCACTGGAAGAATTCACGGG....................................................................................	24	1	229.00	98.00	110.00	21.00
............................................................................AATGGCACTGGAAGAGTTCACGGG....................................................................................	24	1	229.00	66.00	142.00	21.00
............................................................................GATGGCACTGGAAGAATTCACGGG....................................................................................	24	1	224.00	61.00	145.00	18.00
............................................................................AATGGCACTGGGAGAATTCACGGG....................................................................................	24	1	216.00	54.00	145.00	17.00
............................................................................AATGGCACTGGAAGAATTCACCGG....................................................................................	24	1	215.00	136.00	54.00	25.00
............................................................................AATGGCACTGGAAGGATTCACGGG....................................................................................	24	1	214.00	63.00	131.00	20.00
............................................................................AATGGCACTGGAAGAATTCGCGGG....................................................................................	24	1	211.00	56.00	125.00	30.00
............................................................................AATCGCACTGGAAGAATTCACGGG....................................................................................	24	1	209.00	74.00	98.00	37.00
............................................................................AATGCCACTGGAAGAATTCACGGG....................................................................................	24	1	209.00	66.00	108.00	35.00
............................................................................AATGGCACTGGAAGAATTT.........................................................................................	19	1	208.00	118.00	0.00	90.00
............................................................................AATGGCACTxGAAGAATTCACGGG....................................................................................	23	1	204.00	46.00	129.00	29.00
............................................................................AATGGCACTGGAAGAATTTAC.......................................................................................	21	1	202.00	182.00	9.00	11.00
............................................................................AATGGCACTGGAAGCATTCACGGG....................................................................................	24	1	200.00	66.00	114.00	20.00
............................................................................AGTGGCACTGGAAGAATTCACGGG....................................................................................	24	1	190.00	57.00	108.00	25.00
............................................................................AATGGCACTGGAAGAATTCACGA.....................................................................................	23	1	189.00	95.00	6.00	88.00
............................................................................AATGGCACTGGAAGAATTGACG......................................................................................	22	1	183.00	178.00	1.00	4.00
............................................................................AATGGCACTGGAAGAATTGACGG.....................................................................................	23	1	182.00	179.00	0.00	3.00
............................................................................AATGGCACTCGAAGAATTCACGGG....................................................................................	24	1	172.00	59.00	91.00	22.00
............................................................................AATGGCACTGGAAGAATCCACGGG....................................................................................	24	1	171.00	71.00	79.00	21.00
............................................................................AATGGCACTGGAAGAATTAA........................................................................................	20	1	163.00	135.00	0.00	28.00
............................................................................AATGGCACTGGAAGAATTCACAGG....................................................................................	24	1	157.00	50.00	74.00	33.00
...........................................................................CAATGGCACTGGAAGAATTCACGGG....................................................................................	25	1	154.00	32.00	102.00	20.00
............................................................................AATGGCACTGGAAGAATTCACTGG....................................................................................	24	1	153.00	57.00	51.00	45.00
.............................................................................ATGGCACTGGAAGAATTCACGG.....................................................................................	22	1	153.00	59.00	50.00	44.00
......................................................................................................................CGTGATCTCTTAGTGGCATCT.............................................	21	1	151.00	28.00	104.00	19.00
............................................................................AATGGCACTAGAAGAATTCACGGG....................................................................................	24	1	143.00	29.00	71.00	43.00
............................................................................AATAGCACTGGAAGAATTCACGGG....................................................................................	24	1	142.00	56.00	59.00	27.00
............................................................................AATGGCACTGGAAGAATTCACGCG....................................................................................	24	1	142.00	94.00	33.00	15.00
............................................................................AATGGCACTGGAAGAATTCCCGG.....................................................................................	23	1	137.00	85.00	21.00	31.00
............................................................................ACTGGCACTGGAAGAATTCACGGG....................................................................................	24	1	135.00	66.00	57.00	12.00
............................................................................AATGGCACTGGAAGAATTCAA.......................................................................................	21	1	126.00	51.00	2.00	73.00
............................................................................AATGGCACTGCAAGAATTCACGGG....................................................................................	24	1	120.00	47.00	58.00	15.00
............................................................................AATGGCACTGTAAGAATTCACGGG....................................................................................	24	1	118.00	35.00	54.00	29.00
............................................................................AATGGxxCTGGAAGAATTCACGGG....................................................................................	22	1	118.00	8.00	106.00	4.00
............................................................................AATGGCACTTGAAGAATTCACGGG....................................................................................	24	1	118.00	28.00	69.00	21.00
............................................................................AATGGCACTGGAAGAACTCACGGG....................................................................................	24	1	118.00	53.00	51.00	14.00
.............................................................................ATGGCACTGGAAGAATTCACG......................................................................................	21	1	116.00	43.00	33.00	40.00
............................................................................AATGGCACTGAAAGAATTCACGGG....................................................................................	24	1	115.00	38.00	60.00	17.00
............................................................................AATGGCACTGGAAGAATTCACGC.....................................................................................	23	1	114.00	83.00	8.00	23.00
............................................................................AATGGCACTGGAAGAATTCACGTG....................................................................................	24	1	113.00	49.00	37.00	27.00
............................................................................AATGGCTCTGGAAGAATTCACGGG....................................................................................	24	1	112.00	15.00	92.00	5.00
............................................................................AATGGCACTGGAAGAATTGAC.......................................................................................	21	1	111.00	108.00	0.00	3.00
............................................................................AATGGCACTGGAAGAATTCCCG......................................................................................	22	1	109.00	69.00	16.00	24.00
............................................................................AATGACACTGGAAGAATTCACGGG....................................................................................	24	1	108.00	34.00	60.00	14.00
............................................................................AATTGCACTGGAAGAATTCACG......................................................................................	22	1	106.00	48.00	11.00	47.00
............................................................................AATGGCACTGGAAGAATTCACGAG....................................................................................	24	1	106.00	24.00	37.00	45.00
............................................................................AATGGCACTGGAxxAATTCACGGG....................................................................................	22	1	104.00	23.00	63.00	18.00
............................................................................AATGGCACTGGAAGAATTCACC......................................................................................	22	1	104.00	80.00	12.00	12.00
............................................................................AATGGCACTGGAAGAATTCACGTT....................................................................................	24	1	102.00	64.00	1.00	37.00
............................................................................AATGGCACTGGAAGACTTCACG......................................................................................	22	1	101.00	77.00	10.00	14.00
............................................................................AATGGCAATGGAAGAATTCACGGG....................................................................................	24	1	100.00	21.00	37.00	42.00
............................................................................AATGGCACTGGCAGAATTCACGGG....................................................................................	24	1	99.00	44.00	43.00	12.00
............................................................................AATGGAACTGGAAGAATTCACGGG....................................................................................	24	1	96.00	35.00	23.00	38.00
............................................................................AATGGCACTGGAAGAATTCAAGGG....................................................................................	24	1	96.00	20.00	41.00	35.00
............................................................................AATGGCACTGGAACAATTCACGGG....................................................................................	24	1	96.00	40.00	42.00	14.00
............................................................................AATGGCACTGGAAGAATTAACGGGT...................................................................................	25	1	93.00	83.00	4.00	6.00
............................................................................AATGGCACTGGAGGAATTCACGG.....................................................................................	23	1	93.00	48.00	27.00	18.00
............................................................................AATGGCACTGGAAAAATTCACGGG....................................................................................	24	1	92.00	28.00	51.00	13.00
.............................................................................AATGCACTGGAAGAATTCACG......................................................................................	21	1	92.00	49.00	9.00	34.00
............................................................................AATGGCCCTGGAAGAATTCACGGG....................................................................................	24	1	92.00	42.00	39.00	11.00
............................................................................AATGGCACTGGAAGAATTCACGGGAT..................................................................................	26	1	92.00	60.00	6.00	26.00

droYak2

CCA--GCTGC--------T-----------------G-----------------GTATATAGATCTCGGCACAGTTAATGGCACTGGAAGAATTCACGGGGTACTTTTTATACA-ACCCGTGATCTCTTAGTGGCATCTATGGTGCGAGAATAAA---------ACATCCAAA---T----GAA	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
............................................................................AATGGCACTGGAAGAATTCACGGG....................................................................................	24	1	63067.00	14022.00	1470.00	17384.00	4935.00	25256.00
............................................................................AATGGCACTGGAAGAATTCACG......................................................................................	22	1	26580.00	603.00	2087.00	14271.00	7087.00	2532.00
............................................................................AATGGCACTGGAAGAATTCACGG.....................................................................................	23	1	23463.00	718.00	551.00	10218.00	1734.00	10242.00
............................................................................AATGGCACTGGAAGAATTCAC.......................................................................................	21	1	18722.00	428.00	1466.00	9886.00	5342.00	1600.00
............................................................................AATGGCACTGGAAGAATTCA........................................................................................	20	1	7834.00	48.00	767.00	4254.00	2622.00	143.00
............................................................................AATGGCACTGGAAGAATTCACGGGT...................................................................................	25	1	3208.00	163.00	139.00	2098.00	485.00	323.00
............................................................................AATGGCACTGGAAGAATTCACGGGA...................................................................................	25	1	2252.00	62.00	61.00	411.00	144.00	1574.00
............................................................................AATGGCACTGGAAGAATTC.........................................................................................	19	1	2183.00	2.00	139.00	702.00	489.00	851.00
............................................................................AATGGCACTGGAAGAATTCACGGT....................................................................................	24	1	506.00	14.00	25.00	318.00	138.00	11.00
......................................................................................................................CGTGATCTCTTAGTGGCATCTA............................................	22	1	351.00	169.00	9.00	28.00	15.00	130.00
............................................................................AATGGCACTGGAAGAATTCACGT.....................................................................................	23	1	342.00	4.00	33.00	165.00	119.00	21.00
............................................................................AATGGCACTGGCAGAATTCACGGG....................................................................................	24	1	288.00	108.00	17.00	5.00	58.00	100.00
............................................................................AATGGCACTGGAAGAATTCCCGGG....................................................................................	24	1	286.00	55.00	11.00	11.00	80.00	129.00
............................................................................AATGGCACTGGAAGAATTCACA......................................................................................	22	1	236.00	2.00	19.00	116.00	85.00	14.00
............................................................................AATGGCACTGGAAGAATTCACGGGG...................................................................................	25	1	233.00	6.00	1.00	11.00	2.00	213.00
............................................................................AATGGCACTGGAAGCATTCACGGG....................................................................................	24	1	227.00	98.00	13.00	30.00	83.00	3.00
............................................................................AATGGCACTGGAAGAATTCACGGGAA..................................................................................	26	1	200.00	0.00	1.00	5.00	1.00	193.00
............................................................................AATGGCACTGGAAGAATTCACT......................................................................................	22	1	185.00	1.00	17.00	96.00	67.00	4.00
............................................................................AATGGCACTGGAAGAATTCACGGGTT..................................................................................	26	1	180.00	4.00	4.00	127.00	18.00	27.00
............................................................................AATGGCACTGGAAGAATTCACGGC....................................................................................	24	1	172.00	16.00	10.00	81.00	18.00	47.00
............................................................................AATGGCACTGGAAGAATTCCCG......................................................................................	22	1	170.00	4.00	22.00	16.00	111.00	17.00
............................................................................AATGGCACTGGAAGAATTCACGTG....................................................................................	24	1	167.00	22.00	23.00	48.00	74.00	0.00
............................................................................AATGGCACTGGAAGAATTCACGCG....................................................................................	24	1	131.00	33.00	10.00	51.00	36.00	1.00
............................................................................AATGGCACTGGCAGAATTCAC.......................................................................................	21	1	127.00	5.00	16.00	1.00	100.00	5.00
............................................................................AATGGCACTGGAAGCATTCAC.......................................................................................	21	1	121.00	3.00	11.00	16.00	91.00	0.00
............................................................................AATGGCACTGGAAGCATTCACG......................................................................................	22	1	120.00	0.00	13.00	22.00	85.00	0.00
............................................................................AATGGCACTGGAAGAATTCCCGG.....................................................................................	23	1	108.00	5.00	3.00	19.00	16.00	65.00
............................................................................AATTGCACTGGAAGAATTCACGGG....................................................................................	24	1	104.00	0.00	1.00	11.00	1.00	91.00
............................................................................AATGGCACTGGAAGAATTCACCGG....................................................................................	24	1	104.00	52.00	10.00	28.00	11.00	3.00
............................................................................AATGGCACTGGGAGAATTCACGGG....................................................................................	24	1	94.00	52.00	5.00	15.00	16.00	6.00
............................................................................AATGGCACTGGAAGAATTCCC.......................................................................................	21	1	92.00	4.00	4.00	8.00	53.00	23.00
............................................................................AATGGCACTGTAAGAATTCACGGG....................................................................................	24	1	91.00	0.00	0.00	4.00	3.00	84.00
............................................................................AATGTCACTGGAAGAATTCAC.......................................................................................	21	1	90.00	0.00	1.00	10.00	4.00	75.00
............................................................................AATGGCACTGGAAGGATTCACGGG....................................................................................	24	1	88.00	37.00	2.00	13.00	19.00	17.00
............................................................................AATGGCACTGGAAGAATTCACGGA....................................................................................	24	1	87.00	4.00	5.00	38.00	15.00	25.00
............................................................................AATGGCACTGGAAGAATTCACGGGC...................................................................................	25	1	86.00	11.00	0.00	19.00	6.00	50.00
............................................................................AATGGCACTGGAAGAATTCACTGG....................................................................................	24	1	84.00	19.00	12.00	16.00	30.00	7.00
......................................................................................................................CGTGATCTCTTAGTGGCATCT.............................................	21	1	82.00	31.00	7.00	14.00	4.00	26.00
............................................................................AATGGCACTGGAAGAATTCACAGG....................................................................................	24	1	81.00	41.00	7.00	11.00	9.00	13.00
............................................................................AATGGCACTGGAAGACTTCACG......................................................................................	22	1	81.00	0.00	4.00	8.00	69.00	0.00
.............................................................................AATGCACTGGAAGAATTCACGGG....................................................................................	23	1	80.00	1.00	0.00	28.00	0.00	51.00
............................................................................AATGGCACTGGAAGCATTCA........................................................................................	20	1	75.00	1.00	10.00	8.00	56.00	0.00
............................................................................AATGGCACTGGAAGAATTCACGC.....................................................................................	23	1	74.00	1.00	2.00	44.00	15.00	12.00
............................................................................AATGGCACTGGCAGAATTCACGG.....................................................................................	23	1	73.00	8.00	1.00	0.00	24.00	40.00
............................................................................AATGTCACTGGAAGAATTCACG......................................................................................	22	1	70.00	2.00	0.00	9.00	1.00	58.00
............................................................................AATGGCACTGGAAGAATT..........................................................................................	18	1	70.00	0.00	20.00	13.00	35.00	2.00
............................................................................AATGGCACTGGACGAATTCACGGG....................................................................................	24	1	66.00	26.00	2.00	6.00	31.00	1.00
............................................................................AATGTCACTGGAAGAATTCACGGG....................................................................................	24	1	65.00	3.00	1.00	14.00	0.00	47.00
............................................................................AAGGGCACTGGAAGAATTCACGGG....................................................................................	24	1	65.00	34.00	2.00	1.00	26.00	2.00
............................................................................AATGGCACTGGAAGAATTCACC......................................................................................	22	1	65.00	0.00	2.00	32.00	26.00	5.00
............................................................................AATCGCACTGGAAGAATTCACGGG....................................................................................	24	1	64.00	3.00	4.00	16.00	2.00	39.00
............................................................................AATGGCACTGGCAGAATTCACG......................................................................................	22	1	64.00	1.00	10.00	3.00	38.00	12.00
............................................................................AATGGCACTGGAAGACTTCAC.......................................................................................	21	1	63.00	0.00	2.00	2.00	59.00	0.00
............................................................................AATGGCACTAGAAGAATTCACGGG....................................................................................	24	1	63.00	23.00	12.00	10.00	7.00	11.00
............................................................................AATGGCACTGGAAGAATTCACGAG....................................................................................	24	1	61.00	18.00	9.00	19.00	11.00	4.00
............................................................................AATGGCGCTGGAAGAATTCACGGG....................................................................................	24	1	60.00	27.00	2.00	5.00	8.00	18.00
............................................................................AATGGCACTGGAAGAATTCACGA.....................................................................................	23	1	60.00	0.00	9.00	31.00	11.00	9.00
............................................................................AATGGCACTGGAAGAATTCACGGTT...................................................................................	25	1	59.00	0.00	5.00	40.00	11.00	3.00
............................................................................AACGGCACTGGAAGAATTCACGGG....................................................................................	24	1	59.00	13.00	2.00	13.00	15.00	16.00
............................................................................AATGGCACTGGAAGACTTCACGGG....................................................................................	24	1	58.00	15.00	0.00	6.00	36.00	1.00
............................................................................AATGGCACTGGAAGAATTAACGGG....................................................................................	24	1	55.00	18.00	0.00	6.00	9.00	22.00
............................................................................AATGGCACTGGAAGAATTCACGGGTTT.................................................................................	27	1	55.00	1.00	0.00	35.00	2.00	17.00
............................................................................AATGGCACTGGAGGAATTCACGGG....................................................................................	24	1	55.00	18.00	1.00	21.00	7.00	8.00
............................................................................AATGGCACTGGAAGAATTCAA.......................................................................................	21	1	54.00	4.00	7.00	14.00	18.00	11.00
............................................................................AATGGCACTGGAAGAATTCACGGGAT..................................................................................	26	1	52.00	0.00	0.00	6.00	0.00	46.00
............................................................................AATGGCACTGGAAGAATTCGCGGG....................................................................................	24	1	51.00	19.00	0.00	13.00	7.00	12.00
............................................................................AATGGCACTGGCAGAATTCA........................................................................................	20	1	51.00	1.00	7.00	2.00	40.00	1.00
............................................................................AATGCCACTGGAAGAATTCACGGG....................................................................................	24	1	50.00	4.00	0.00	11.00	1.00	34.00
.............................................................................ATGGCACTGGAAGAATTCACGGG....................................................................................	23	1	50.00	11.00	0.00	18.00	2.00	19.00
............................................................................AGTGGCACTGGAAGAATTCACGGG....................................................................................	24	1	47.00	15.00	1.00	7.00	5.00	19.00
............................................................................GATGGCACTGGAAGAATTCACGGG....................................................................................	24	1	46.00	15.00	3.00	8.00	2.00	18.00
............................................................................AATGGCACTGGGAGAATTCACG......................................................................................	22	1	45.00	3.00	4.00	5.00	33.00	0.00
............................................................................AATGGCACTGGAAGAATTCATGGG....................................................................................	24	1	45.00	10.00	2.00	14.00	3.00	16.00
............................................................................AATTGCACTGGAAGAATTCACG......................................................................................	22	1	45.00	0.00	0.00	10.00	2.00	33.00
............................................................................AATCGCACTGGAAGAATTCACG......................................................................................	22	1	44.00	0.00	4.00	8.00	14.00	18.00
............................................................................AATGGCACTGGAAGAATTCAAGGG....................................................................................	24	1	43.00	23.00	1.00	4.00	6.00	9.00
............................................................................AATTGCACTGGAAGAATTCACGG.....................................................................................	23	1	42.00	0.00	0.00	10.00	2.00	30.00
............................................................................AATGGCACTGGAAGCATTCACGG.....................................................................................	23	1	42.00	3.00	0.00	14.00	23.00	2.00
............................................................................AATGGCACTGGAAGAGTTCACGGG....................................................................................	24	1	42.00	20.00	5.00	9.00	5.00	3.00
............................................................................AATGGCACTGGGAGAATTCAC.......................................................................................	21	3	13.67	0.33	1.67	2.00	9.00	0.67
............................................................................AATTGCACTGGAAGAATTCAC.......................................................................................	21	1	41.00	0.00	0.00	7.00	4.00	30.00
............................................................................AATGCCACTGGAAGAATTCACG......................................................................................	22	1	41.00	0.00	1.00	14.00	5.00	21.00
............................................................................AATGGCAATGGAAGAATTCACGGG....................................................................................	24	1	40.00	20.00	2.00	3.00	14.00	1.00
.............................................................................AATGCACTGGAAGAATTCACG......................................................................................	21	1	40.00	0.00	1.00	18.00	0.00	21.00
............................................................................AATGGCACTGGAAGGATTCACG......................................................................................	22	1	40.00	1.00	5.00	15.00	17.00	2.00
................................................................................GCACTGGAAGAATTCACGGG....................................................................................	20	1	39.00	0.00	0.00	11.00	0.00	28.00
............................................................................AATGGAACTGGAAGAATTCACGGG....................................................................................	24	1	37.00	16.00	1.00	4.00	10.00	6.00
............................................................................AATAGCACTGGAAGAATTCACGGG....................................................................................	24	1	37.00	13.00	1.00	10.00	0.00	13.00
............................................................................AATGGCACTGGACGAATTCAC.......................................................................................	21	1	37.00	1.00	2.00	1.00	33.00	0.00
............................................................................AATGGCACTGGAAGAATTCACGTT....................................................................................	24	1	37.00	2.00	3.00	21.00	9.00	2.00
............................................................................AATGGCACTGGAAGAATGCACG......................................................................................	22	1	37.00	1.00	2.00	0.00	33.00	1.00
............................................................................AATGGCACTTGAAGAATTCACGGG....................................................................................	24	1	36.00	3.00	1.00	3.00	3.00	26.00
............................................................................AAGGGCACTGGAAGAATTCAC.......................................................................................	21	1	36.00	1.00	4.00	1.00	30.00	0.00
............................................................................AATGGCACTAGAAGAATTCACG......................................................................................	22	1	36.00	1.00	20.00	7.00	8.00	0.00
............................................................................AATGGCACTGGAAGAATCCACGGG....................................................................................	24	1	35.00	14.00	1.00	13.00	6.00	1.00
............................................................................AATGGCACTGGTAGAATTCAC.......................................................................................	21	1	35.00	2.00	1.00	0.00	32.00	0.00
............................................................................AATGGCCCTGGAAGAATTCACGGG....................................................................................	24	1	35.00	6.00	0.00	2.00	8.00	19.00
............................................................................AATGGCACTGGAAGAACTCACGGG....................................................................................	24	1	35.00	17.00	0.00	7.00	5.00	6.00
............................................................................AATGGCACCGGAAGAATTCACGGG....................................................................................	24	1	34.00	10.00	1.00	9.00	3.00	11.00
.............................................................................ATGGCACTGGAAGAATTCACGG.....................................................................................	22	1	34.00	1.00	2.00	12.00	2.00	17.00
............................................................................AATGGCACTGCAAGAATTCACGGG....................................................................................	24	1	34.00	4.00	1.00	9.00	2.00	18.00

droEre2

CCA--TCTGA--------T-----------------G-----------------GTGTATAGATCTCGGCACAGTTAATGGCACTGGAAGAATTCACGGGGTACTTTTGATACA-ACCCGTGATCTCTTAGTGGCATCTATGGTGCGAGAATAAA---------ACATCCGAA---T----GAA	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
............................................................................AATGGCACTGGAAGAATTCACGGG....................................................................................	24	1	57576.00	9651.00	2374.00	0.00	45551.00
............................................................................AATGGCACTGGAAGAATTCACG......................................................................................	22	1	27816.00	853.00	3090.00	0.00	23873.00
............................................................................AATGGCACTGGAAGAATTCAC.......................................................................................	21	1	27429.00	792.00	1528.00	0.00	25109.00
............................................................................AATGGCACTGGAAGAATTCACGG.....................................................................................	23	1	22286.00	1044.00	1311.00	0.00	19931.00
............................................................................AATGGCACTGGAAGAATTCA........................................................................................	20	1	10325.00	124.00	758.00	0.00	9443.00
............................................................................AATGGCACTGGAAGAATTCACGGGT...................................................................................	25	1	4219.00	140.00	166.00	0.00	3913.00
............................................................................AATGGCACTGGAAGAATTC.........................................................................................	19	1	3025.00	12.00	89.00	0.00	2924.00
............................................................................AATGGCACTGGAAGAATTCACGGGA...................................................................................	25	1	1565.00	67.00	73.00	0.00	1425.00
............................................................................AATGGCACTGGAAGAATTCACTGG....................................................................................	24	1	1437.00	204.00	11.00	0.00	1222.00
............................................................................AATGGCACTGGAAGAATTCACGGT....................................................................................	24	1	932.00	101.00	70.00	0.00	761.00
............................................................................AATGGCACTGGAAGAATTCACGTG....................................................................................	24	1	893.00	257.00	34.00	0.00	602.00
............................................................................AATGGCACTGGAAGAATTCACGT.....................................................................................	23	1	746.00	19.00	34.00	0.00	693.00
............................................................................AATGGCACTGGAAGAATTCACGCG....................................................................................	24	1	620.00	153.00	6.00	0.00	461.00
............................................................................AATTGCACTGGAAGAATTCACGGG....................................................................................	24	1	590.00	33.00	1.00	0.00	556.00
............................................................................AATGGCACTTGAAGAATTCACGGG....................................................................................	24	1	530.00	41.00	2.00	0.00	487.00
............................................................................AATGGCACTGGAAGAATTCACGAG....................................................................................	24	1	436.00	26.00	4.00	0.00	406.00
............................................................................AATGGCACTGGAAGAATTCACT......................................................................................	22	1	408.00	10.00	24.00	0.00	374.00
............................................................................AATGGCACTGGAAGAATTCACCGG....................................................................................	24	1	387.00	321.00	3.00	0.00	63.00
............................................................................AATGGCACTGGAATAATTCACGGG....................................................................................	24	1	349.00	34.00	2.00	0.00	313.00
............................................................................AATGGCACTGTAAGAATTCACGGG....................................................................................	24	1	331.00	27.00	1.00	0.00	303.00
............................................................................AATGGCACTGGAAGAATTCACA......................................................................................	22	1	316.00	7.00	30.00	0.00	279.00
............................................................................AATTGCACTGGAAGAATTCAC.......................................................................................	21	1	316.00	2.00	0.00	0.00	314.00
............................................................................AATTGCACTGGAAGAATTCACG......................................................................................	22	1	306.00	4.00	0.00	0.00	302.00
............................................................................AATGGCACTTGAAGAATTCAC.......................................................................................	21	1	302.00	7.00	4.00	0.00	291.00
............................................................................AATGTCACTGGAAGAATTCACGGG....................................................................................	24	1	282.00	39.00	0.00	0.00	243.00
............................................................................AATGGCACTGGAAGAATTAACGGG....................................................................................	24	1	270.00	7.00	3.00	0.00	260.00
............................................................................AATGGCACTTGAAGAATTCACG......................................................................................	22	1	263.00	4.00	0.00	0.00	259.00
............................................................................AATTGCACTGGAAGAATTCACGG.....................................................................................	23	1	258.00	2.00	1.00	0.00	255.00
............................................................................AATGGCACTGGAAGAATTCACTG.....................................................................................	23	1	226.00	18.00	8.00	0.00	200.00
............................................................................AATGGCACTGGAAGAATTCACGC.....................................................................................	23	1	222.00	2.00	6.00	0.00	214.00
......................................................................................................................CGTGATCTCTTAGTGGCATCTA............................................	22	1	212.00	93.00	16.00	0.00	103.00
............................................................................AATGGCACTTGAAGAATTCACGG.....................................................................................	23	1	207.00	4.00	0.00	0.00	203.00
............................................................................AATGGCACTGGAAGAATTCACGA.....................................................................................	23	1	204.00	1.00	6.00	0.00	197.00
............................................................................AATGGCACTGGAATAATTCACG......................................................................................	22	1	200.00	1.00	1.00	0.00	198.00
............................................................................AATGGCACTGGAATAATTCAC.......................................................................................	21	1	195.00	2.00	1.00	0.00	192.00
............................................................................AATGGCACTGGAAGAATT..........................................................................................	18	1	189.00	2.00	2.00	0.00	185.00
............................................................................AATGGCACTGTAAGAATTCACG......................................................................................	22	1	187.00	2.00	2.00	0.00	183.00
............................................................................AATGGAACTGGAAGAATTCACGGG....................................................................................	24	1	184.00	4.00	0.00	0.00	180.00
............................................................................AATGGCACTGTAAGAATTCAC.......................................................................................	21	1	176.00	10.00	1.00	0.00	165.00
............................................................................AATGGCACTGGAAGAATTCACGGGTT..................................................................................	26	1	171.00	2.00	1.00	0.00	168.00
............................................................................AATGGCACTGGAAGAATTAAC.......................................................................................	21	1	166.00	0.00	4.00	0.00	162.00
............................................................................ATTGGCACTGGGAGAATTCAC.......................................................................................	21	3	54.00	0.00	0.33	0.00	53.67
............................................................................AATGGCACTGGAAGAATTAACG......................................................................................	22	1	153.00	0.00	4.00	0.00	149.00
............................................................................AATGGCACTGTAAGAATTCACGG.....................................................................................	23	1	147.00	7.00	3.00	0.00	137.00
............................................................................AATGTCACTGGAAGAATTCACG......................................................................................	22	1	143.00	3.00	1.00	0.00	139.00
............................................................................AATGGCACTGGAAGAATTCACGGA....................................................................................	24	1	141.00	17.00	8.00	0.00	116.00
............................................................................AATGTCACTGGAAGAATTCAC.......................................................................................	21	1	140.00	1.00	2.00	0.00	137.00
............................................................................AATGGCACTGGAATAATTCACGG.....................................................................................	23	1	136.00	1.00	1.00	0.00	134.00
............................................................................AATGGCACTGGAAGAATTCAAGGG....................................................................................	24	1	132.00	10.00	5.00	0.00	117.00
............................................................................AATGGCACTGGAAGAATTCACAGG....................................................................................	24	1	130.00	43.00	16.00	0.00	71.00
............................................................................AATGGAACTGGAAGAATTCAC.......................................................................................	21	1	126.00	0.00	1.00	0.00	125.00
............................................................................AATGGCACTGGAAGCATTCACGGG....................................................................................	24	1	124.00	51.00	16.00	0.00	57.00
............................................................................AATGGCACTGGAAGAATTCCCGGG....................................................................................	24	1	124.00	38.00	19.00	0.00	67.00
............................................................................AATGGCACTGGAAGAATTAACGG.....................................................................................	23	1	119.00	1.00	1.00	0.00	117.00
............................................................................AATGTCACTGGAAGAATTCACGG.....................................................................................	23	1	119.00	3.00	0.00	0.00	116.00
............................................................................AATTGCACTGGAAGAATTCA........................................................................................	20	1	117.00	2.00	0.00	0.00	115.00
............................................................................AATGGCAATGGAAGAATTCACGGG....................................................................................	24	1	116.00	7.00	1.00	0.00	108.00
............................................................................AATGGCACTGGAAGAATTCACTGGT...................................................................................	25	1	112.00	1.00	0.00	0.00	111.00
............................................................................AATGGCACTTGAAGAATTCA........................................................................................	20	1	111.00	1.00	1.00	0.00	109.00
............................................................................AACGGCACTGGAAGAATTCACGGG....................................................................................	24	1	108.00	13.00	4.00	0.00	91.00
............................................................................ATTGGCACTGGGAGAATTCA........................................................................................	20	3	35.33	0.00	0.67	0.00	34.67
............................................................................AATGGAACTGGAAGAATTCACG......................................................................................	22	1	101.00	2.00	5.00	0.00	94.00
............................................................................AATGGCACTGGAAGAATTCACGGC....................................................................................	24	1	99.00	30.00	8.00	0.00	61.00
............................................................................AATGGCACTGGAAGAATTCAA.......................................................................................	21	1	98.00	2.00	9.00	0.00	87.00
............................................................................AATGGCACTGGCAGAATTCACGGG....................................................................................	24	1	97.00	51.00	18.00	0.00	28.00
............................................................................AATGGCACTGGAAGAATTCCCG......................................................................................	22	1	88.00	3.00	34.00	0.00	51.00
.............................................................................ATGGCACTGGAAGAATTCACGGG....................................................................................	23	1	88.00	3.00	2.00	0.00	83.00
............................................................................AATGGCACTGGAAGAATTCACGGTT...................................................................................	25	1	85.00	0.00	5.00	0.00	80.00
............................................................................AATAGCACTGGAAGAATTCACGGG....................................................................................	24	1	85.00	11.00	5.00	0.00	69.00
............................................................................AATGGCACTGGAATAATTCA........................................................................................	20	1	84.00	0.00	2.00	0.00	82.00
............................................................................AATGGCACTGGAAGAATTCAAG......................................................................................	22	1	81.00	2.00	5.00	0.00	74.00
............................................................................AATGGAACTGGAAGAATTCACGG.....................................................................................	23	1	81.00	0.00	2.00	0.00	79.00
............................................................................AATGGCACTGGAAGAATTCACGGGC...................................................................................	25	1	81.00	20.00	2.00	0.00	59.00
............................................................................AATGGCACTGGAGGAATTCACGGG....................................................................................	24	1	81.00	16.00	4.00	0.00	61.00
............................................................................AATGGCACTGGAAGACTTCACGGG....................................................................................	24	1	79.00	13.00	2.00	0.00	64.00
............................................................................AAGGGCACTGGAAGAATTCACGGG....................................................................................	24	1	74.00	28.00	6.00	0.00	40.00
............................................................................AATGGCACTGGAAGAATCCACGGG....................................................................................	24	1	71.00	6.00	2.00	0.00	63.00
............................................................................AATGGCACTGGGAGAATTCACGGG....................................................................................	24	1	70.00	27.00	9.00	0.00	34.00
............................................................................AATGTCACTGGAAGAATTCA........................................................................................	20	1	65.00	0.00	1.00	0.00	64.00
............................................................................AATGGCACTCGAAGAATTCACGGG....................................................................................	24	1	64.00	25.00	1.00	0.00	38.00
............................................................................AATGGCACCGGAAGAATTCACGGG....................................................................................	24	1	63.00	7.00	1.00	0.00	55.00
............................................................................AATGGCGCTGGAAGAATTCACGGG....................................................................................	24	1	63.00	15.00	2.00	0.00	46.00
............................................................................AATGGCAATGGAAGAATTCACG......................................................................................	22	1	63.00	2.00	4.00	0.00	57.00
............................................................................AATGGCACTGGAAGAATTCACGTGT...................................................................................	25	1	60.00	1.00	2.00	0.00	57.00
............................................................................AATGGCAATGGAAGAATTCAC.......................................................................................	21	1	60.00	0.00	1.00	0.00	59.00
.............................................................................AATGCACTGGAAGAATTCACGGG....................................................................................	23	1	60.00	1.00	0.00	0.00	59.00
............................................................................AATGGCACTGGAAGAATTAA........................................................................................	20	1	60.00	0.00	1.00	0.00	59.00
............................................................................GATGGCACTGGAAGAATTCACGGG....................................................................................	24	1	58.00	16.00	1.00	0.00	41.00
............................................................................AATGGCACTAGAAGAATTCACGGG....................................................................................	24	1	58.00	15.00	16.00	0.00	27.00
............................................................................AATGGCACTGGAAGAATTCATGGG....................................................................................	24	1	57.00	15.00	4.00	0.00	38.00
............................................................................AAAGGCACTGGAAGAATTCACGGG....................................................................................	24	1	56.00	5.00	0.00	0.00	51.00
............................................................................AATGGCACTGGAAGGATTCACGGG....................................................................................	24	1	56.00	27.00	4.00	0.00	25.00
............................................................................AACGGCACTGGAAGAATTCAC.......................................................................................	21	1	52.00	2.00	2.00	0.00	48.00
............................................................................AATGCCACTGGAAGAATTCACGGG....................................................................................	24	1	52.00	8.00	1.00	0.00	43.00
............................................................................AATGGCACTGGAGGAATTCAC.......................................................................................	21	1	52.00	1.00	1.00	0.00	50.00
............................................................................AATGGCACTGTAAGAATTCA........................................................................................	20	1	51.00	1.00	2.00	0.00	48.00
............................................................................AATGGCACTGGAAGAATTCACTGGA...................................................................................	25	1	51.00	1.00	1.00	0.00	49.00
............................................................................AATGGCACTGGAAGAATTCACGTT....................................................................................	24	1	50.00	6.00	2.00	0.00	42.00
............................................................................AATCGCACTGGAAGAATTCACGGG....................................................................................	24	1	49.00	4.00	0.00	0.00	45.00
............................................................................AATGGCACTGGAAGAGTTCACGGG....................................................................................	24	1	49.00	8.00	5.00	0.00	36.00
............................................................................AATGGCACTGGAAGAATTCGCGGG....................................................................................	24	1	49.00	16.00	1.00	0.00	32.00

droEug1

GAA--TCTTG--------T-----------------GAAG-------------TGTTCAATCATCTCGGCACAGTTAATGGCACTGGAAGAATTCACGGGGTAATTTCTATACA-ACCCGTGATCTCTTAGTGGCATCTATGGTGCGGGATTAAA---------ACATCCA-------------

Size

Hit Count

Total Norm

droBia1

CGA--T------------------------------GAA---------------GT-----AATCTCGGCACAGTTAATGGCACTGGAAGAATTCACGGGGTGATTT-TATACA-ACCCGTGATCTCTTAGTGGCATCTATGGTGCGGGAACAAA---------ACAACCACA---T----GAA

Size

Hit Count

Total Norm

droTak1

ATT--TTCAA--------T-----------------C--G-------------TGT--A---ATCTCGGCACAGTTAATGGCACTGGAAGAATTCACGGGGTAATTTTTATACA-ACCCGTGATCTCTTAGTGGCATTTATGGTGCGGGAATAAA---------ACATCAAAA---------AG

Size

Hit Count

Total Norm

droEle1

CTAGTTCTTG--------------------------AAAG-------------TGTAACTCCATCTCGGCACAGTTAATGGCACTGGAAGAATTCACGGGGTAATTTTCATACC-ACCCGTGATCTCTTAGTGGCATCTATGGTGCGGGAATAAA---------ACATCAAAA---T----CAA

Size

Hit Count

Total Norm

droRho1

CAA--TCTTT--------------------------AAAG-------------TGTTACTACATCTCGGCACAGTTAATGGCACTGGAAGAATTCACGGGGTAATTTCTATACC-ACCCGTGATCTCTTAGTGGCATCTATGGTGCGGGAATAAA---------ACATCCAAA---T----GAA

Size

Hit Count

Total Norm

droFic1

TAA--TCTTG--------A-----------------CAA---------------GTCACTCCATCTCGGCACAGTTAATGGCACTGGAAGAATTCACGGGGTAATTTCTATACA-ACCCGTGATCTCTTAGTGGCATCTATGGTGCGGGAATAAG---------ACATC-------------AA

Size

Hit Count

Total Norm

droKik1

AGA--TCTTG--------C-----------------AGAG-------------TGTTAAACCATCTCGGCACAGTTAATGGCACTGGAAGAATTCACGGGGTTATTTCTAAACA-ACCCGTGATCTCTTAGTGGCATCTATGGTGCGGGAATTGA---------ACATCCAAT--CA----GAA

Size

Hit Count

Total Norm

droAna3

ACA--A------------------------------------------------GTTTCTCCATCTCGGCACAGTTAATGGCACTGGAAGAATTCACGGGGTAATTTCTATACA-ACCCGTGATCTCTTAGTGGCATCTATGGTGCGGGATTAAA---------ACATCAAAAAAGT----GA-	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
............................................................................AATGGCACTGGAAGAATTCACGGG....................................................................................	24	1	64606.00	15333.00	42484.00	5169.00	1620.00
............................................................................AATGGCACTGGAAGAATTCACG......................................................................................	22	1	57429.00	18154.00	30702.00	8349.00	224.00
............................................................................AATGGCACTGGAAGAATTCAC.......................................................................................	21	1	54393.00	8891.00	40478.00	4812.00	212.00
............................................................................AATGGCACTGGAAGAATTCACGG.....................................................................................	23	1	43907.00	8534.00	31932.00	3031.00	410.00
............................................................................AATGGCACTGGAAGAATTCA........................................................................................	20	1	25772.00	7357.00	15110.00	3243.00	62.00
............................................................................AATGGCACTGGAAGAATTC.........................................................................................	19	1	7556.00	2371.00	4523.00	642.00	20.00
............................................................................AATGGCACTGGAAGAATTCACGGGT...................................................................................	25	1	7510.00	1848.00	5206.00	403.00	53.00
............................................................................AATGGCACTGGAAGAATTCACGT.....................................................................................	23	1	2016.00	322.00	1574.00	115.00	5.00
............................................................................AATGGCACTGGAAGAATTCACGGT....................................................................................	24	1	1842.00	507.00	1188.00	132.00	15.00
............................................................................AATGGCACTGGAAGAATTCACGGGA...................................................................................	25	1	1329.00	332.00	751.00	140.00	106.00
............................................................................AATGGCACTGGAAGAATTCACT......................................................................................	22	1	1194.00	333.00	733.00	124.00	4.00
............................................................................AATGGCACTGGAAGAATTCACA......................................................................................	22	1	643.00	171.00	394.00	69.00	9.00
............................................................................AATGGCACTGGAAGAATTCACGTG....................................................................................	24	1	516.00	58.00	327.00	58.00	73.00
............................................................................AAGGGCACTGGAAGAATTCACGGG....................................................................................	24	1	497.00	1.00	440.00	53.00	3.00
............................................................................AATGTCACTGGAAGAATTCACGGG....................................................................................	24	1	440.00	84.00	354.00	1.00	1.00
............................................................................AATGTCACTGGAAGAATTCAC.......................................................................................	21	1	425.00	74.00	346.00	5.00	0.00
............................................................................AATGGCACTGGAAGAATTCACGGGTT..................................................................................	26	1	425.00	113.00	287.00	24.00	1.00
............................................................................AAGGGCACTGGAAGAATTCAC.......................................................................................	21	1	403.00	2.00	358.00	43.00	0.00
............................................................................AATGTCACTGGAAGAATTCACG......................................................................................	22	1	368.00	115.00	240.00	13.00	0.00
............................................................................AATGGCACTGGAAGAATTCACTGG....................................................................................	24	1	359.00	34.00	252.00	33.00	40.00
............................................................................AATGGCACTGGAAGAATTCAAGGG....................................................................................	24	1	331.00	107.00	222.00	2.00	0.00
............................................................................AATGGCACTGGAAGAATTCAA.......................................................................................	21	1	330.00	65.00	238.00	22.00	5.00
............................................................................AAGGGCACTGGAAGAATTCACG......................................................................................	22	1	329.00	2.00	265.00	62.00	0.00
............................................................................AATGGCACTGGAAGAATT..........................................................................................	18	1	314.00	21.00	222.00	69.00	2.00
............................................................................AATGGCACTGGAAGAATTCAAG......................................................................................	22	1	313.00	113.00	180.00	20.00	0.00
............................................................................AATGGCACTGGAAGAATTCAT.......................................................................................	21	1	305.00	107.00	170.00	28.00	0.00
............................................................................AATGGCACTGGAAGAATTCATGGG....................................................................................	24	1	298.00	130.00	157.00	10.00	1.00
............................................................................AATGGCACTGGAAGAATTCATG......................................................................................	22	1	292.00	158.00	107.00	27.00	0.00
............................................................................AAGGGCACTGGAAGAATTCACGG.....................................................................................	23	1	289.00	1.00	272.00	15.00	1.00
............................................................................AATGTCACTGGAAGAATTCACGG.....................................................................................	23	1	287.00	48.00	236.00	1.00	2.00
............................................................................AATGGAACTGGAAGAATTCAC.......................................................................................	21	1	286.00	26.00	243.00	17.00	0.00
............................................................................AATGGAACTGGAAGAATTCACG......................................................................................	22	1	282.00	66.00	186.00	30.00	0.00
............................................................................AATGGCACTGGAAGAATTT.........................................................................................	19	1	268.00	98.00	152.00	18.00	0.00
............................................................................AATGGAACTGGAAGAATTCACGGG....................................................................................	24	1	261.00	33.00	219.00	9.00	0.00
............................................................................AATGGCACTGGAAGAATTCACGGC....................................................................................	24	1	261.00	61.00	143.00	47.00	10.00
............................................................................AATGGAACTGGAAGAATTCACGG.....................................................................................	23	1	237.00	29.00	198.00	10.00	0.00
............................................................................AATGGCACTGGAAGAATTCACGGTT...................................................................................	25	1	235.00	84.00	139.00	12.00	0.00
............................................................................AATGGCACTGGAAGAATTCAG.......................................................................................	21	1	226.00	92.00	129.00	5.00	0.00
............................................................................AATGGCACTGGAATAATTCACGGG....................................................................................	24	1	224.00	29.00	187.00	2.00	6.00
............................................................................AATGGCACTGGAATAATTCAC.......................................................................................	21	1	215.00	26.00	185.00	2.00	2.00
............................................................................AATGGCACTGGAAGAATTCAAGG.....................................................................................	23	1	215.00	46.00	161.00	7.00	1.00
............................................................................AATGGCACTGGAAGAATTCACGC.....................................................................................	23	1	213.00	27.00	144.00	42.00	0.00
............................................................................AATGGCACTGGAAGAATTCACGGA....................................................................................	24	1	208.00	71.00	112.00	19.00	6.00
............................................................................AATGGCACTGTAAGAATTCACGGG....................................................................................	24	1	208.00	52.00	149.00	2.00	5.00
............................................................................AATGGCACTGTAAGAATTCAC.......................................................................................	21	1	207.00	31.00	167.00	6.00	3.00
............................................................................AATGGCACTTGAAGAATTCAC.......................................................................................	21	1	203.00	10.00	187.00	4.00	2.00
............................................................................AATGGCACTTGAAGAATTCACGGG....................................................................................	24	1	198.00	18.00	168.00	4.00	8.00
............................................................................AATTGCACTGGAAGAATTCACGGG....................................................................................	24	1	197.00	34.00	160.00	2.00	1.00
............................................................................AATGTCACTGGAAGAATTCA........................................................................................	20	1	195.00	50.00	142.00	3.00	0.00
............................................................................AATTGCACTGGAAGAATTCACG......................................................................................	22	1	179.00	42.00	133.00	3.00	1.00
............................................................................AATGGCACTGGAAGAATTCATGG.....................................................................................	23	1	179.00	69.00	105.00	5.00	0.00
............................................................................AATGGCACTGGAAGAATTCACGGGC...................................................................................	25	1	174.00	27.00	120.00	24.00	3.00
............................................................................AATGGCACTGGAATAATTCACG......................................................................................	22	1	174.00	65.00	102.00	7.00	0.00
............................................................................AATTGCACTGGAAGAATTCAC.......................................................................................	21	1	171.00	28.00	142.00	0.00	1.00
............................................................................AATGGCACTGGAAGAATTCACTG.....................................................................................	23	1	156.00	14.00	120.00	13.00	9.00
............................................................................AATGGCACTGGAAGAATTCACGCG....................................................................................	24	1	154.00	10.00	48.00	57.00	39.00
............................................................................AAGGGCACTGGAAGAATTCA........................................................................................	20	1	153.00	1.00	129.00	23.00	0.00
............................................................................AATGGCACTGGAAGAATTCT........................................................................................	20	1	150.00	50.00	80.00	20.00	0.00
............................................................................AATGGCACTGTAAGAATTCACG......................................................................................	22	1	148.00	47.00	94.00	7.00	0.00
............................................................................AATGGCACTGTAAGAATTCACGG.....................................................................................	23	1	144.00	21.00	121.00	0.00	2.00
............................................................................AATTGCACTGGAAGAATTCACGG.....................................................................................	23	1	143.00	15.00	123.00	2.00	3.00
............................................................................AATGGCACTGGAATAATTCACGG.....................................................................................	23	1	142.00	22.00	116.00	3.00	1.00
............................................................................AATGGCACTGGAAGAATTCACAGG....................................................................................	24	1	137.00	20.00	103.00	7.00	7.00
............................................................................AATGGCACTGGAAGAATTAAC.......................................................................................	21	1	137.00	8.00	117.00	12.00	0.00
............................................................................AATGGCACTGGAAGAATTCAGG......................................................................................	22	1	137.00	83.00	45.00	9.00	0.00
............................................................................AATGGCACTTGAAGAATTCACG......................................................................................	22	1	134.00	19.00	106.00	8.00	1.00
............................................................................AATGGCACTGGAAGAATTCACGTT....................................................................................	24	1	132.00	45.00	78.00	8.00	1.00
............................................................................AATGGCACTGGAAGAATTCACGA.....................................................................................	23	1	131.00	23.00	90.00	16.00	2.00
............................................................................AATGGCACTGGAAGAATTCAGGGG....................................................................................	24	1	130.00	70.00	59.00	1.00	0.00
............................................................................AATGGCACTGGAAGAATTAACGGG....................................................................................	24	1	130.00	22.00	100.00	8.00	0.00
............................................................................AATGGCACTGGAAGAATTAACG......................................................................................	22	1	129.00	20.00	88.00	21.00	0.00
............................................................................AATGGCACTTGAAGAATTCACGG.....................................................................................	23	1	127.00	10.00	111.00	1.00	5.00
............................................................................AATGGCACTGGAAGAATTCACCGG....................................................................................	24	1	124.00	12.00	19.00	43.00	50.00
............................................................................AATGGCACTGGGAGAATTCACG......................................................................................	22	1	122.00	58.00	39.00	24.00	1.00
............................................................................AATGGCACTGGAGGAATTCACGGG....................................................................................	24	1	120.00	35.00	76.00	6.00	3.00
............................................................................AATGGCACTGGCAGAATTCACGGG....................................................................................	24	1	119.00	46.00	21.00	41.00	11.00
............................................................................ATTGGCACTGGGAGAATTCAC.......................................................................................	21	2	59.00	0.00	54.50	4.50	0.00
............................................................................GATGGCACTGGAAGAATTCACG......................................................................................	22	1	118.00	39.00	63.00	15.00	1.00
............................................................................AATGGCACTGGCAGAATTCACG......................................................................................	22	1	117.00	72.00	10.00	29.00	6.00
............................................................................AATGGAACTGGAAGAATTCA........................................................................................	20	1	114.00	25.00	81.00	8.00	0.00
............................................................................GATGGCACTGGAAGAATTCACGGG....................................................................................	24	1	111.00	31.00	72.00	7.00	1.00
............................................................................AATGGCACTGGAAGAATTAACGG.....................................................................................	23	1	110.00	19.00	87.00	4.00	0.00
............................................................................AATGGCACTGGAGGAATTCACG......................................................................................	22	1	108.00	43.00	49.00	15.00	1.00
............................................................................AATGGCACTGGAGGAATTCAC.......................................................................................	21	1	108.00	22.00	77.00	9.00	0.00
............................................................................AATGGCACTGGAAGAATTCACGAG....................................................................................	24	1	107.00	24.00	60.00	14.00	9.00
............................................................................AATGGCACTGGAAGAATTCACGGGTTT.................................................................................	27	1	106.00	34.00	70.00	2.00	0.00
......................................................................................................................CGTGATCTCTTAGTGGCATCTA............................................	22	1	97.00	25.00	46.00	6.00	20.00
............................................................................AATGGCACTGGGAGAATTCACGGG....................................................................................	24	1	95.00	42.00	40.00	10.00	3.00
............................................................................GATGGCACTGGAAGAATTCAC.......................................................................................	21	1	94.00	11.00	77.00	5.00	1.00
.............................................................................ATGGCACTGGAAGAATTCACGGG....................................................................................	23	1	94.00	24.00	57.00	10.00	3.00
............................................................................AATGGCACTGTAAGAATTCA........................................................................................	20	1	92.00	22.00	67.00	2.00	1.00
............................................................................AATGGCACTGGAAGAATTCACC......................................................................................	22	1	92.00	16.00	23.00	49.00	4.00
............................................................................AATGGCACTGGGAGAATTCAC.......................................................................................	21	2	45.00	12.00	18.00	14.50	0.50
............................................................................AATGGCACTGGAAGACTTCACG......................................................................................	22	1	89.00	52.00	14.00	22.00	1.00
............................................................................AATGGCACTGAAAGAATTCACG......................................................................................	22	1	89.00	56.00	27.00	6.00	0.00
............................................................................AATGGCACTGGAAGAGTTCACG......................................................................................	22	1	88.00	40.00	31.00	17.00	0.00
............................................................................AATGGCACTGGAATAATTCA........................................................................................	20	1	88.00	15.00	69.00	4.00	0.00
............................................................................AATGGCACTTGAAGAATTCA........................................................................................	20	1	88.00	16.00	69.00	3.00	0.00
............................................................................AGTGGCACTGGAAGAATTCACG......................................................................................	22	1	86.00	41.00	28.00	17.00	0.00
............................................................................AATTGCACTGGAAGAATTCA........................................................................................	20	1	86.00	17.00	66.00	3.00	0.00
............................................................................GATGGCACTGGAAGAATTCACGG.....................................................................................	23	1	86.00	16.00	66.00	3.00	1.00

droBip1

------------------------------------------------------GTTTCTCCATCTCGGCACAGTTAATGGCACTGGAAGAATTCACGGGGTAATTTCTATACA-ACCCGTGATCTCTTAGTGGCATCTATGGTGCGGGATTAAA---------ACATCAAAAGAGTGAATACA

Size

Hit Count

Total Norm

dp4

ACT--CATAA-----------------------------G-------------TGTATCCACATCCCGGCACAGTTAATGGCACTGGAAGAATTCACGGGGTT-TTTCAATACA-ACCCGTGATCTCTTAGTGGCATCTATGGTGCGGGACT-------------CATCTCAA---T----CAA	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
............................................................................AATGGCACTGGAAGAATTCACGGG....................................................................................	24	1	52962.00	31805.00	14926.00	3248.00	2983.00
............................................................................AATGGCACTGGAAGAATTCAC.......................................................................................	21	1	20887.00	15723.00	1463.00	3596.00	105.00
............................................................................AATGGCACTGGAAGAATTCACGG.....................................................................................	23	1	19788.00	15541.00	1578.00	1423.00	1246.00
............................................................................AATGGCACTGGAAGAATTCACG......................................................................................	22	1	18114.00	12772.00	1322.00	3824.00	196.00
............................................................................AATGGCACTGGAAGAATTCA........................................................................................	20	1	9969.00	7251.00	218.00	2480.00	20.00
............................................................................AATGGCACTGGAAGAATTCACGGGT...................................................................................	25	1	6626.00	5932.00	380.00	249.00	65.00
............................................................................AATGGCACTGGAAGAATTC.........................................................................................	19	1	1782.00	1202.00	13.00	452.00	115.00
............................................................................AATGGCACTGGAAGAATTCACGGT....................................................................................	24	1	929.00	814.00	39.00	75.00	1.00
............................................................................AATGGCACTGGAAGAATTCACGGGA...................................................................................	25	1	776.00	521.00	72.00	55.00	128.00
............................................................................AATGGCACTGGAAGAATTCACGT.....................................................................................	23	1	637.00	541.00	9.00	83.00	4.00
............................................................................AATGGCACTGGAAGAATTCACGGGTT..................................................................................	26	1	490.00	462.00	9.00	10.00	9.00
......................................................................................................................CGTGATCTCTTAGTGGCATCTA............................................	22	1	306.00	20.00	266.00	14.00	6.00
............................................................................AATGGCACTGGAAGAATTCACGGTT...................................................................................	25	1	254.00	246.00	0.00	8.00	0.00
............................................................................AATGGCACTGGAAGAATTCACA......................................................................................	22	1	236.00	159.00	4.00	73.00	0.00
............................................................................AATGGCACTGGAAGAATTCACGGGTTT-................................................................................	27	1	210.00	204.00	0.00	1.00	5.00
............................................................................AATGGCACTGGAAGCATTCACGGG....................................................................................	24	1	164.00	14.00	135.00	15.00	0.00
............................................................................AATGGCACTGGAAGAATTCACT......................................................................................	22	1	146.00	122.00	4.00	19.00	1.00
............................................................................AATGGCACTGGCAGAATTCACGGG....................................................................................	24	1	131.00	10.00	109.00	10.00	2.00
............................................................................AATGGCACTGGAAGAATTCACGCG....................................................................................	24	1	131.00	17.00	85.00	29.00	0.00
.............................................................................ATGGCACTGGAAGAATTCACGGG....................................................................................	23	1	131.00	83.00	22.00	12.00	14.00
............................................................................AATGGCACTGGAAGGATTCACGGG....................................................................................	24	1	106.00	23.00	76.00	6.00	1.00
............................................................................AATGGCACTGGAAGAATTCACCGG....................................................................................	24	1	105.00	32.00	64.00	9.00	0.00
............................................................................AATGGCACTGGAAGAATTCCCGGG....................................................................................	24	1	102.00	55.00	39.00	7.00	1.00
............................................................................AATGGCACTGGGAGAATTCACGGG....................................................................................	24	1	91.00	22.00	58.00	6.00	5.00
............................................................................AATGGCACTGGAAGTATTCACGGG....................................................................................	24	1	84.00	1.00	80.00	3.00	0.00
............................................................................AATGGCACTGGAAGAATTCAA.......................................................................................	21	1	82.00	42.00	11.00	29.00	0.00
............................................................................AATGGCACTGGAAGAATTCACTGG....................................................................................	24	1	81.00	14.00	59.00	7.00	1.00
............................................................................AAGGGCACTGGAAGAATTCACGGG....................................................................................	24	1	78.00	2.00	62.00	14.00	0.00
............................................................................AATGGCACTGGAAGAATTT.........................................................................................	19	1	77.00	67.00	0.00	9.00	1.00
............................................................................AATGGCACTGGAAGAATTCACAGG....................................................................................	24	1	75.00	21.00	45.00	7.00	2.00
............................................................................AATGGCACTGGAAGAATTCACGTG....................................................................................	24	1	74.00	18.00	45.00	11.00	0.00
............................................................................AACGGCACTGGAAGAATTCACGGG....................................................................................	24	1	67.00	25.00	30.00	10.00	2.00
......................................................................................................................CGTGATCTCTTAGTGGCATCT.............................................	21	1	67.00	13.00	46.00	5.00	3.00
............................................................................AATGGCACTGGAAGAATTCACGGC....................................................................................	24	1	66.00	31.00	21.00	12.00	2.00
............................................................................AATGGCACTGGAAGAATTCACGGA....................................................................................	24	1	63.00	51.00	4.00	6.00	2.00
...........................................................................CAATGGCACTGGAAGAATTCACGGG....................................................................................	25	1	62.00	47.00	10.00	4.00	1.00
............................................................................AATGGCGCTGGAAGAATTCACGGG....................................................................................	24	1	59.00	29.00	26.00	3.00	1.00
.............................................................................ATGGCACTGGAAGAATTCACGG.....................................................................................	22	1	59.00	47.00	1.00	4.00	7.00
............................................................................AATGGCACTGGAGGAATTCACGGG....................................................................................	24	1	58.00	29.00	21.00	4.00	4.00
............................................................................AATGGCACTGGAAGAATTCACGTT....................................................................................	24	1	57.00	52.00	0.00	5.00	0.00
............................................................................AATGGCACTGGAAGAATTCACGGGC...................................................................................	25	1	54.00	30.00	14.00	5.00	5.00
............................................................................AATGGCAATGGAAGAATTCACGGG....................................................................................	24	1	53.00	5.00	42.00	5.00	1.00
............................................................................AATGGCACTAGAAGAATTCACGGG....................................................................................	24	1	51.00	16.00	33.00	2.00	0.00
............................................................................AATTGCACTGGAAGAATTCACGGG....................................................................................	24	1	50.00	37.00	1.00	2.00	10.00
............................................................................AATGGCACCGGAAGAATTCACGGG....................................................................................	24	1	48.00	28.00	17.00	2.00	1.00
............................................................................AATGGCACTGGAAGAATTCGCGGG....................................................................................	24	1	48.00	16.00	25.00	6.00	1.00
............................................................................AATCGCACTGGAAGAATTCACGGG....................................................................................	24	1	46.00	32.00	11.00	2.00	1.00
............................................................................AATGGCACTGGAAGAGTTCACGGG....................................................................................	24	1	46.00	22.00	20.00	3.00	1.00
............................................................................AATGGCACTGGAAGAATT..........................................................................................	18	1	46.00	23.00	2.00	19.00	2.00
............................................................................AATGGCACTGGAAGAACTCACGGG....................................................................................	24	1	45.00	17.00	24.00	3.00	1.00
............................................................................AATGGTACTGGAAGAATTCACGGG....................................................................................	24	1	44.00	18.00	20.00	4.00	2.00
............................................................................AATGGCACTGGTAGAATTCACGGG....................................................................................	24	1	44.00	3.00	37.00	4.00	0.00
............................................................................AGTGGCACTGGAAGAATTCACGGG....................................................................................	24	1	43.00	21.00	17.00	1.00	4.00
............................................................................AATGGCACTGGAAGCATTCAC.......................................................................................	21	1	43.00	7.00	9.00	26.00	1.00
............................................................................AATGGCACTGGACGAATTCACGGG....................................................................................	24	1	42.00	8.00	30.00	4.00	0.00
............................................................................AATAGCACTGGAAGAATTCACGGG....................................................................................	24	1	42.00	18.00	20.00	4.00	0.00
............................................................................AATGGCACTGGAAGAATTCAAGGG....................................................................................	24	1	42.00	12.00	27.00	2.00	1.00
............................................................................AATGGCACTGGAAGACTTCACGGG....................................................................................	24	1	42.00	12.00	27.00	3.00	0.00
............................................................................AATGGCACTGGAAGAATTCACGGTTT..................................................................................	26	1	41.00	39.00	0.00	1.00	1.00
............................................................................AATGGCACTGGAAGAATTCATGGG....................................................................................	24	1	41.00	21.00	15.00	4.00	1.00
............................................................................AAAGGCACTGGAAGAATTCACGGG....................................................................................	24	1	40.00	3.00	22.00	15.00	0.00
.............................................................................ATGGCACTGGAAGAATTCACG......................................................................................	21	1	40.00	30.00	0.00	10.00	0.00
............................................................................AATGGCACTGGAAGAATTCACGAG....................................................................................	24	1	40.00	13.00	22.00	3.00	2.00
............................................................................AATGGAACTGGAAGAATTCACGGG....................................................................................	24	1	39.00	8.00	28.00	3.00	0.00
............................................................................AATGGCACTCGAAGAATTCACGGG....................................................................................	24	1	38.00	17.00	21.00	0.00	0.00
............................................................................GATGGCACTGGAAGAATTCACGGG....................................................................................	24	1	38.00	24.00	13.00	1.00	0.00
.............................................................................AATGCACTGGAAGAATTCACGGG....................................................................................	23	1	38.00	29.00	0.00	0.00	9.00
............................................................................AATGGCACTGGAAGAATTTACGGG....................................................................................	24	1	38.00	20.00	16.00	2.00	0.00
............................................................................AATGGCACTGGAAGAATTCACGGGTTT-T...............................................................................	28	1	37.00	37.00	0.00	0.00	0.00
............................................................................AATGGCACTGGCAGAATTCAC.......................................................................................	21	1	37.00	5.00	10.00	22.00	0.00
............................................................................AATGGCACTGGAAGAATTCCCGG.....................................................................................	23	1	37.00	23.00	7.00	6.00	1.00
............................................................................AATGGCACTGGATGAATTCACGGG....................................................................................	24	1	36.00	4.00	27.00	2.00	3.00
............................................................................AATGGCACTGGAAGAATTCCCG......................................................................................	22	1	35.00	23.00	4.00	8.00	0.00
............................................................................AATGCCACTGGAAGAATTCACGGG....................................................................................	24	1	34.00	28.00	2.00	2.00	2.00
............................................................................AATGGCACTGGAAGAATTAACGGG....................................................................................	24	1	33.00	10.00	18.00	5.00	0.00
............................................................................AATGGCACTGGAAGGATTCAC.......................................................................................	21	1	33.00	12.00	15.00	6.00	0.00
............................................................................AATGTCACTGGAAGAATTCACGGG....................................................................................	24	1	33.00	26.00	4.00	1.00	2.00
............................................................................AATGGCACTGGAAGAATTCCC.......................................................................................	21	1	33.00	17.00	7.00	9.00	0.00
............................................................................AATGGCACTGGAAGAATCCACGGG....................................................................................	24	1	32.00	19.00	9.00	4.00	0.00
............................................................................AATGGCACTGGAAGAATTCACGA.....................................................................................	23	1	30.00	21.00	2.00	7.00	0.00
............................................................................AATGGCACTGGAAGAAGTCACGGG....................................................................................	24	1	30.00	0.00	25.00	5.00	0.00
............................................................................AATGACACTGGAAGAATTCACGGG....................................................................................	24	1	29.00	16.00	9.00	3.00	1.00
............................................................................AATGGCACTGGAAGAATTCACC......................................................................................	22	1	29.00	19.00	3.00	7.00	0.00
............................................................................AATGGCACTGCAAGAATTCACGGG....................................................................................	24	1	29.00	13.00	11.00	2.00	3.00
............................................................................AATGGCACTGGAAGCATTCA........................................................................................	20	1	28.00	5.00	3.00	20.00	0.00
............................................................................AATGGCACTGGAAGAATTCT........................................................................................	20	1	28.00	19.00	0.00	9.00	0.00
............................................................................AATGGCATTGGAAGAATTCACGGG....................................................................................	24	1	28.00	13.00	12.00	2.00	1.00
............................................................................AACGGCACTGGAAGAATTCAC.......................................................................................	21	1	27.00	14.00	3.00	10.00	0.00
............................................................................AATGGCACTGTAAGAATTCACGGG....................................................................................	24	1	27.00	15.00	2.00	0.00	10.00
............................................................................AATGGCACTGGAAGAATTCACGC.....................................................................................	23	1	27.00	20.00	1.00	5.00	1.00
.............................................................................ATGGCACTGGAAGAATTCAC.......................................................................................	20	1	26.00	21.00	1.00	4.00	0.00
............................................................................AATGGCACTGGAGGAATTCACG......................................................................................	22	1	25.00	15.00	3.00	7.00	0.00
............................................................................AATGGCACTGGAAGAATTCACGGGG...................................................................................	25	1	25.00	12.00	8.00	2.00	3.00
............................................................................AATGGCACTGGAAGAACTCAC.......................................................................................	21	1	25.00	15.00	2.00	8.00	0.00
............................................................................AATGGCACCGGAAGAATTCACGG.....................................................................................	23	1	25.00	22.00	1.00	1.00	1.00
............................................................................AATGGCACTGGAAGAATGCACGGG....................................................................................	24	1	25.00	0.00	21.00	4.00	0.00
............................................................................AAAGGCACTGGAAGAATTCAC.......................................................................................	21	1	24.00	1.00	2.00	21.00	0.00
............................................................................AATGGCACTGGAAGAATTCAT.......................................................................................	21	1	24.00	15.00	5.00	4.00	0.00
............................................................................AAGGGCACTGGAAGAATTCAC.......................................................................................	21	1	24.00	3.00	7.00	14.00	0.00
.............................................................................ATGGCACTGGAAGAATTCACGGGT...................................................................................	24	1	24.00	21.00	0.00	2.00	1.00
............................................................................AAGGGCACTGGAAGAATTCACG......................................................................................	22	1	23.00	4.00	6.00	12.00	1.00

droPer1

ACT--CATAA-----------------------------G-------------TGTATCCACATCCCGGCACAGTTAATGGCACTGGAAGAATTCACGGGGTT-TTTCAATACA-ACCCGTGATCTCTTAGTGGCATCTATGGTGCGGGACT-------------CATCTCAA---T----CAA	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
............................................................................AATGGCACTGGAAGAATTCACGGG....................................................................................	24	1	56930.00	10722.00	2285.00	1883.00	6915.00	35125.00
............................................................................AATGGCACTGGAAGAATTCAC.......................................................................................	21	1	22612.00	3062.00	162.00	4308.00	14760.00	320.00
............................................................................AATGGCACTGGAAGAATTCACGG.....................................................................................	23	1	16590.00	5739.00	304.00	864.00	3870.00	5813.00
............................................................................AATGGCACTGGAAGAATTCACG......................................................................................	22	1	15479.00	2654.00	349.00	2938.00	8932.00	606.00
............................................................................AATGGCACTGGAAGAATTCA........................................................................................	20	1	11985.00	1479.00	73.00	2476.00	7933.00	24.00
............................................................................AATGGCACTGGAAGAATTCACGGGT...................................................................................	25	1	2755.00	1714.00	61.00	112.00	710.00	158.00
............................................................................AATGGCACTGGAAGAATTC.........................................................................................	19	1	2500.00	415.00	8.00	403.00	1647.00	27.00
............................................................................AATGGCACTGGAAGAATTCACGGGA...................................................................................	25	1	1414.00	213.00	33.00	43.00	173.00	952.00
............................................................................AATGGCACTGGAAGAATTCACGGT....................................................................................	24	1	514.00	247.00	5.00	53.00	202.00	7.00
......................................................................................................................CGTGATCTCTTAGTGGCATCTA............................................	22	1	481.00	11.00	46.00	10.00	50.00	364.00
............................................................................AATGGCACTGGAAGAATTCACGT.....................................................................................	23	1	395.00	110.00	1.00	62.00	219.00	3.00
............................................................................AATGGCACTGGAAGAATTCACA......................................................................................	22	1	327.00	22.00	3.00	63.00	238.00	1.00
............................................................................AATTGCACTGGAAGAATTCACGGG....................................................................................	24	1	243.00	11.00	0.00	0.00	1.00	231.00
............................................................................AAGGGCACTGGAAGAATTCAC.......................................................................................	21	1	235.00	0.00	1.00	8.00	226.00	0.00
............................................................................AATGGCACTGGAAGAATTCACGGGTT..................................................................................	26	1	188.00	151.00	0.00	1.00	33.00	3.00
.............................................................................AATGCACTGGAAGAATTCACGGG....................................................................................	23	1	164.00	11.00	0.00	0.00	0.00	153.00
............................................................................AATGGCACTGGAAGAATTCACT......................................................................................	22	1	137.00	15.00	2.00	20.00	98.00	2.00
............................................................................AATGGCACTGGAAGAATTCACGGGG...................................................................................	25	1	135.00	6.00	0.00	0.00	5.00	124.00
.............................................................................ATGGCACTGGAAGAATTCACGGG....................................................................................	23	1	131.00	25.00	1.00	9.00	24.00	72.00
............................................................................AATGGCACTGTAAGAATTCACGGG....................................................................................	24	1	128.00	9.00	0.00	0.00	2.00	117.00
............................................................................AATGGCACTGGAAGAATTCAA.......................................................................................	21	1	127.00	1.00	2.00	27.00	97.00	0.00
............................................................................AATGGCACTGGAAGCATTCAC.......................................................................................	21	1	117.00	0.00	3.00	18.00	96.00	0.00
............................................................................AATGGCACTGGCAGAATTCAC.......................................................................................	21	1	117.00	2.00	2.00	18.00	95.00	0.00
............................................................................AATGGCACTGGAAGAATT..........................................................................................	18	1	117.00	5.00	1.00	18.00	91.00	2.00
............................................................................AATGGCACTGGAGGAATTCACGGG....................................................................................	24	1	117.00	6.00	2.00	1.00	16.00	92.00
............................................................................AATGGCACTGGAAGAATTCACGGC....................................................................................	24	1	114.00	24.00	1.00	8.00	49.00	32.00
............................................................................AATGGCACTGGAAGAATTCACGTG....................................................................................	24	1	113.00	13.00	4.00	10.00	84.00	2.00
............................................................................AATGGCACTGGAAGAATTCACGCG....................................................................................	24	1	111.00	5.00	4.00	18.00	79.00	5.00
............................................................................AATGTCACTGGAAGAATTCACGGG....................................................................................	24	1	109.00	15.00	0.00	0.00	4.00	90.00
......................................................................................................................CGTGATCTCTTAGTGGCATCT.............................................	21	1	107.00	3.00	6.00	2.00	18.00	78.00
............................................................................AATCGCACTGGAAGAATTCACGGG....................................................................................	24	1	101.00	11.00	0.00	0.00	12.00	78.00
............................................................................AAGGGCACTGGAAGAATTCACG......................................................................................	22	1	92.00	0.00	1.00	5.00	86.00	0.00
............................................................................AATGGCACTGGGAGAATTCAC.......................................................................................	21	2	43.50	1.00	0.00	6.00	36.50	0.00
............................................................................AATGGCACTGGCAGAATTCA........................................................................................	20	1	86.00	0.00	4.00	11.00	71.00	0.00
............................................................................AATGGCACTGGAAGAATTCACGGGTTT-................................................................................	27	1	82.00	67.00	0.00	0.00	13.00	2.00
............................................................................AAGGGCACTGGAAGAATTCACGGG....................................................................................	24	1	82.00	2.00	3.00	3.00	71.00	3.00
............................................................................AATGGCACTGGAAGAATTCACGGGAA..................................................................................	26	1	81.00	1.00	0.00	0.00	4.00	76.00
............................................................................AATGGCACTGGAAGAATTCACGGA....................................................................................	24	1	77.00	24.00	1.00	9.00	14.00	29.00
............................................................................AATGGCACTGCAAGAATTCACGGG....................................................................................	24	1	75.00	5.00	1.00	1.00	10.00	58.00
............................................................................AATGGCACTGGAAGAATTCACTGG....................................................................................	24	1	74.00	17.00	2.00	6.00	29.00	20.00
............................................................................AATGGCACTGGAAGAATTCACCGG....................................................................................	24	1	72.00	5.00	6.00	9.00	49.00	3.00
............................................................................AATGGCACTGGAAGAATTCACC......................................................................................	22	1	70.00	2.00	1.00	14.00	53.00	0.00
............................................................................AATGGCACTGGAAGCATTCA........................................................................................	20	1	70.00	1.00	1.00	10.00	58.00	0.00
............................................................................AATGGCACTGGAAGGATTCAC.......................................................................................	21	1	70.00	0.00	2.00	7.00	61.00	0.00
............................................................................AAGGGCACTGGAAGAATTCA........................................................................................	20	1	69.00	0.00	0.00	0.00	69.00	0.00
............................................................................AATGGCAATGGAAGAATTCAC.......................................................................................	21	1	68.00	3.00	1.00	4.00	60.00	0.00
............................................................................AAAGGCACTGGAAGAATTCAC.......................................................................................	21	1	68.00	0.00	0.00	5.00	63.00	0.00
............................................................................AATGGCACTGGAAGCATTCACGGG....................................................................................	24	1	68.00	2.00	16.00	7.00	40.00	3.00
............................................................................AATGGCACTGGGAGAATTCA........................................................................................	20	2	33.00	0.50	0.50	2.00	30.00	0.00
............................................................................AATGGCACTGGAAGAATTCAT.......................................................................................	21	1	66.00	2.00	2.00	5.00	57.00	0.00
............................................................................AATGGCACTGGAAGACTTCAC.......................................................................................	21	1	60.00	0.00	1.00	5.00	54.00	0.00
................................................................................GCACTGGAAGAATTCACGGG....................................................................................	20	1	60.00	5.00	0.00	2.00	0.00	53.00
............................................................................AATGCCACTGGAAGAATTCACGGG....................................................................................	24	1	59.00	8.00	1.00	1.00	5.00	44.00
............................................................................AATGGCACTGGTAGAATTCAC.......................................................................................	21	1	58.00	0.00	1.00	0.00	56.00	1.00
............................................................................AATGGCACTGGAAGCATTCACG......................................................................................	22	1	57.00	0.00	4.00	10.00	43.00	0.00
............................................................................AATGGCACTGGAAGAATTCACGGTT...................................................................................	25	1	56.00	36.00	0.00	2.00	18.00	0.00
............................................................................AATGGCACTGGAAGAATTCCC.......................................................................................	21	1	56.00	1.00	1.00	15.00	39.00	0.00
............................................................................AATGGCACTGGGAGAATTCACGGG....................................................................................	24	1	56.00	5.00	9.00	5.00	29.00	8.00
............................................................................AATGGCACTGGAAGAATTCACGGGC...................................................................................	25	1	56.00	21.00	4.00	3.00	16.00	12.00
............................................................................AGTGGCACTGGAAGAATTCACGGG....................................................................................	24	1	55.00	4.00	1.00	0.00	12.00	38.00
............................................................................AATGGCAATGGAAGAATTCACG......................................................................................	22	1	55.00	0.00	0.00	1.00	54.00	0.00
............................................................................AATAGCACTGGAAGAATTCACGGG....................................................................................	24	1	54.00	8.00	1.00	2.00	8.00	35.00
............................................................................AATGGCACTGGAAGAATTCACAGG....................................................................................	24	1	53.00	10.00	7.00	8.00	14.00	14.00
............................................................................AATGGCACTGGAAGAATTCTC.......................................................................................	21	1	52.00	0.00	1.00	1.00	50.00	0.00
............................................................................AATGGCACTGGAAGAATTCGCGGG....................................................................................	24	1	51.00	9.00	1.00	2.00	21.00	18.00
............................................................................ATTGGCACTGGGAGAATTCA........................................................................................	20	2	25.00	0.50	0.00	1.50	23.00	0.00
............................................................................GATGGCACTGGAAGAATTCACGGG....................................................................................	24	1	50.00	19.00	1.00	0.00	9.00	21.00
............................................................................AATGGCACTGGCAGAATTCACGGG....................................................................................	24	1	49.00	1.00	18.00	2.00	26.00	2.00
............................................................................AACGGCACTGGAAGAATTCACGGG....................................................................................	24	1	48.00	8.00	4.00	2.00	21.00	13.00
............................................................................AATGGCGCTGGAAGAATTCACGGG....................................................................................	24	1	47.00	1.00	3.00	0.00	15.00	28.00
............................................................................AATGGCACTGGAAGAACTCAC.......................................................................................	21	1	47.00	0.00	0.00	7.00	40.00	0.00
............................................................................AATGGAACTGGAAGAATTCAC.......................................................................................	21	1	46.00	2.00	0.00	16.00	28.00	0.00
............................................................................AATGGCACTGGACGAATTCACGGG....................................................................................	24	1	46.00	0.00	4.00	0.00	14.00	28.00
............................................................................AATGGCACTGGAAGAATTCCCGGG....................................................................................	24	1	45.00	1.00	6.00	4.00	9.00	25.00
............................................................................AATGGCACTGGAAGAATGCAC.......................................................................................	21	1	45.00	0.00	0.00	3.00	42.00	0.00
............................................................................AATGGCACTGGAAGAATTCACGC.....................................................................................	23	1	45.00	1.00	0.00	3.00	36.00	5.00
............................................................................AATGGCACTGGAAGAATTCTCG......................................................................................	22	1	44.00	0.00	1.00	4.00	39.00	0.00
............................................................................AATGGCACTGGAAGAATGCACG......................................................................................	22	1	44.00	0.00	0.00	4.00	40.00	0.00
............................................................................AATGGCACTGGAAGAATTCT........................................................................................	20	1	42.00	2.00	0.00	4.00	36.00	0.00
.............................................................................ATGGCACTGGAAGAATTCACGG.....................................................................................	22	1	41.00	14.00	0.00	3.00	15.00	9.00
............................................................................AATGGCACTGGAAGAATTCATGGG....................................................................................	24	1	40.00	7.00	4.00	0.00	11.00	18.00
............................................................................AATGGCACTGGAAGGATTCACGGG....................................................................................	24	1	40.00	3.00	8.00	3.00	17.00	9.00
............................................................................ATTGGCACTGGGAGAATTCAC.......................................................................................	21	2	20.00	1.00	0.00	1.50	17.50	0.00
............................................................................AATGGCACTGGAAGAATTCCCG......................................................................................	22	1	40.00	0.00	2.00	8.00	29.00	1.00
............................................................................AATGGCACTGGATGAATTCA........................................................................................	20	1	39.00	0.00	0.00	2.00	37.00	0.00
............................................................................AATGACACTGGAAGAATTCAC.......................................................................................	21	1	39.00	2.00	0.00	3.00	34.00	0.00
.............................................................................ATGGCACTGGAAGAATTCACG......................................................................................	21	1	39.00	4.00	1.00	10.00	24.00	0.00
............................................................................AATGGCACTGGAAGAATTT.........................................................................................	19	1	39.00	13.00	0.00	1.00	25.00	0.00
............................................................................AATGGCACCGGAAGAATTCAC.......................................................................................	21	1	38.00	1.00	0.00	4.00	33.00	0.00
............................................................................AATGGCACGGGAAGAATTCAC.......................................................................................	21	1	38.00	1.00	0.00	1.00	36.00	0.00
............................................................................AATTGCACTGGAAGAATTCACGG.....................................................................................	23	1	37.00	9.00	0.00	0.00	2.00	26.00
............................................................................AATGGCACTGGAAGAATCCAC.......................................................................................	21	1	37.00	5.00	0.00	2.00	29.00	1.00
............................................................................AATGGCACTGGAAGAATTCACGA.....................................................................................	23	1	37.00	5.00	0.00	9.00	22.00	1.00
............................................................................AATGGCACTGGAAGAAGTCAC.......................................................................................	21	1	37.00	0.00	1.00	2.00	34.00	0.00
............................................................................AATCGCACTGGAAGAATTCACG......................................................................................	22	1	37.00	0.00	1.00	2.00	29.00	5.00
............................................................................AATGGCACTGGAGGAATTCA........................................................................................	20	1	37.00	1.00	0.00	8.00	28.00	0.00
............................................................................AATGTCACTGGAAGAATTCAC.......................................................................................	21	1	37.00	8.00	1.00	3.00	8.00	17.00
............................................................................AATGGCACTGCAAGAATTCAC.......................................................................................	21	1	37.00	1.00	0.00	3.00	33.00	0.00
............................................................................AATGGCGCTGGAAGAATTCAC.......................................................................................	21	1	36.00	0.00	0.00	5.00	30.00	1.00
............................................................................AATAGCACTGGAAGAATTCAC.......................................................................................	21	1	36.00	5.00	0.00	11.00	20.00	0.00
............................................................................AATGGCACTGGAAGAATTAAC.......................................................................................	21	1	36.00	0.00	2.00	6.00	28.00	0.00

droWil1

CTT--TCGAT--------T-----------------G-----------------GT-TCTGCATCTCGGCACAGTTAATGGCACTGGAAGAATTCACGGGGTTTTTATTTAACACACCCGTGATCTCTTAGTGGCATCTATGGTGCGGGATTTAAGCATACAGAACATCCGAC--AT----CAA	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
............................................................................AATGGCACTGGAAGAATTCACGGG....................................................................................	24	1	376078.00	32869.00	217800.00	52999.00	72410.00
............................................................................AATGGCACTGGAAGAATTCAC.......................................................................................	21	1	150318.00	15433.00	13244.00	116246.00	5395.00
............................................................................AATGGCACTGGAAGAATTCACGG.....................................................................................	23	1	102393.00	24527.00	17768.00	33197.00	26901.00
............................................................................AATGGCACTGGAAGAATTCACG......................................................................................	22	1	62511.00	20012.00	6651.00	30515.00	5333.00
............................................................................AATGGCACTGGAAGAATTCA........................................................................................	20	1	37725.00	6635.00	1270.00	29197.00	623.00
............................................................................AATGGCACTGGAAGAATTC.........................................................................................	19	1	23358.00	1456.00	95.00	18484.00	3323.00
............................................................................AATGGCACTGGAAGAATTCACGGGT...................................................................................	25	1	14179.00	5636.00	2495.00	5427.00	621.00
............................................................................AATGGCACTGGAAGAATTCACGGGA...................................................................................	25	1	8147.00	936.00	1831.00	1018.00	4362.00
............................................................................AATGGCACTGGAAGAATTCACT......................................................................................	22	1	1720.00	269.00	29.00	1378.00	44.00
............................................................................AATGGCACTGGAAGAATTCACGGT....................................................................................	24	1	1692.00	574.00	479.00	592.00	47.00
......................................................................................................................CGTGATCTCTTAGTGGCATCTA............................................	22	1	1627.00	33.00	1099.00	69.00	426.00
............................................................................AATGGCACTGGAAGAATTCACA......................................................................................	22	1	1418.00	236.00	91.00	1032.00	59.00
............................................................................AATGGCACTGGAAGAATTCACGT.....................................................................................	23	1	1093.00	335.00	53.00	663.00	42.00
............................................................................AATTGCACTGGAAGAATTCACGGG....................................................................................	24	1	1072.00	30.00	544.00	90.00	408.00
............................................................................AATGGCACTGGAAGAATTCACTGG....................................................................................	24	1	852.00	17.00	743.00	73.00	19.00
............................................................................AATGTCACTGGAAGAATTCACGGG....................................................................................	24	1	670.00	33.00	395.00	66.00	176.00
............................................................................AATGGCACTGTAAGAATTCACGGG....................................................................................	24	1	608.00	11.00	360.00	35.00	202.00
............................................................................AATGGCACTGGAAGAATTCACGGC....................................................................................	24	1	604.00	104.00	282.00	110.00	108.00
.............................................................................AATGCACTGGAAGAATTCACGGG....................................................................................	23	1	602.00	38.00	283.00	69.00	212.00
............................................................................AATGGCACTGGAAGAATTCAA.......................................................................................	21	1	584.00	19.00	12.00	535.00	18.00
............................................................................AATGGCACTGGAAGAATTCACGGGG...................................................................................	25	1	573.00	24.00	22.00	35.00	492.00
............................................................................AATGGAACTGGAAGAATTCACGGG....................................................................................	24	1	571.00	5.00	372.00	177.00	17.00
............................................................................AATGGCACTGGAAGAATTAAC.......................................................................................	21	1	567.00	5.00	12.00	546.00	4.00
............................................................................AATGGCACTGGAGGAATTCACGGG....................................................................................	24	1	561.00	31.00	249.00	79.00	202.00
............................................................................AATGGCACTTGAAGAATTCACGGG....................................................................................	24	1	555.00	15.00	455.00	38.00	47.00
............................................................................AATGGCACTGGAAGAATTAACGGG....................................................................................	24	1	544.00	3.00	289.00	240.00	12.00
............................................................................AATGGCACTGGAAGAATTCACGGGTT..................................................................................	26	1	530.00	330.00	38.00	130.00	32.00
............................................................................CATGGCACTGGAAGAATTCAC.......................................................................................	21	2	264.50	3.50	1.50	259.50	0.00
............................................................................AATGGCAATGGAAGAATTCAC.......................................................................................	21	1	508.00	5.00	5.00	498.00	0.00
............................................................................AATGGCACTGGAAGAATTCACAGG....................................................................................	24	1	508.00	22.00	256.00	203.00	27.00
............................................................................AATGGCACTGGAAGAATTCACGGA....................................................................................	24	1	479.00	75.00	151.00	187.00	66.00
............................................................................AATGGCACTGGAAGAATTCACGGGAA..................................................................................	26	1	476.00	12.00	20.00	9.00	435.00
............................................................................AATGGCACTGGAAGAATTCACGTG....................................................................................	24	1	471.00	37.00	357.00	68.00	9.00
............................................................................AATGGCACTGGAAGAATTCACC......................................................................................	22	1	462.00	48.00	11.00	389.00	14.00
............................................................................AACGGCACTGGAAGAATTCACGGG....................................................................................	24	1	458.00	45.00	308.00	75.00	30.00
............................................................................AATCGCACTGGAAGAATTCACGGG....................................................................................	24	1	449.00	29.00	206.00	71.00	143.00
............................................................................AATGGAACTGGAAGAATTCAC.......................................................................................	21	1	430.00	4.00	36.00	386.00	4.00
............................................................................AATGGCACTGGAAGAATTCAAGGG....................................................................................	24	1	428.00	10.00	142.00	253.00	23.00
............................................................................AATGGCACTGGAAGAATT..........................................................................................	18	1	388.00	28.00	11.00	328.00	21.00
.............................................................................ATGGCACTGGAAGAATTCACGGG....................................................................................	23	1	385.00	33.00	220.00	67.00	65.00
............................................................................AATGTCACTGGAAGAATTCAC.......................................................................................	21	1	382.00	9.00	22.00	136.00	215.00
............................................................................AATGGCACTGGAAGAATTCCCGGG....................................................................................	24	1	382.00	32.00	201.00	116.00	33.00
............................................................................AATGGCACCGGAAGAATTCACGGG....................................................................................	24	1	381.00	36.00	234.00	67.00	44.00
............................................................................AATGGCACTGGAAGAATTCACCGG....................................................................................	24	1	365.00	70.00	225.00	63.00	7.00
............................................................................AATTGCACTGGAAGAATTCAC.......................................................................................	21	1	363.00	22.00	27.00	195.00	119.00
............................................................................AATGCCACTGGAAGAATTCACGGG....................................................................................	24	1	326.00	24.00	185.00	61.00	56.00
............................................................................AATGGCACTGGAATAATTCACGGG....................................................................................	24	1	322.00	4.00	275.00	25.00	18.00
............................................................................AATAGCACTGGAAGAATTCACGGG....................................................................................	24	1	322.00	30.00	165.00	89.00	38.00
............................................................................AATGGCGCTGGAAGAATTCACGGG....................................................................................	24	1	321.00	22.00	198.00	45.00	56.00
............................................................................AATGGCACTGGAAGAATTCATGGG....................................................................................	24	1	313.00	30.00	189.00	59.00	35.00
............................................................................AATGGCACTGGAAGAATTCACGAG....................................................................................	24	1	310.00	24.00	130.00	146.00	10.00
............................................................................AATGGCACTGGAAGAATTCGCGGG....................................................................................	24	1	309.00	28.00	195.00	46.00	40.00
............................................................................AATGGCACTGGAAGAATCCACGGG....................................................................................	24	1	305.00	26.00	194.00	77.00	8.00
............................................................................GATGGCACTGGAAGAATTCACGGG....................................................................................	24	1	305.00	20.00	166.00	83.00	36.00
............................................................................AATGGCACTGGAAGAATTCACGGGTTT.................................................................................	27	1	303.00	253.00	8.00	12.00	30.00
............................................................................AATGGCACTGGAAGAATTCACGGGC...................................................................................	25	1	300.00	44.00	100.00	93.00	63.00
............................................................................AATGGCACTGGAAGAATTT.........................................................................................	19	1	295.00	24.00	1.00	265.00	5.00
............................................................................TATGGCACTGGAAGAATTCAC.......................................................................................	21	1	294.00	1.00	1.00	292.00	0.00
............................................................................AGTGGCACTGGAAGAATTCACGGG....................................................................................	24	1	287.00	10.00	152.00	52.00	73.00
............................................................................AATGGCAATGGAAGAATTCACGGG....................................................................................	24	1	282.00	5.00	68.00	206.00	3.00
............................................................................AATGGCACTGGAAGAATTCACGCG....................................................................................	24	1	272.00	43.00	178.00	41.00	10.00
............................................................................AATGGCACTCGAAGAATTCACGGG....................................................................................	24	1	268.00	22.00	175.00	51.00	20.00
............................................................................AATGGCACTGGAAGACTTCACGGG....................................................................................	24	1	268.00	18.00	190.00	59.00	1.00
............................................................................CATGGCACTGGAAGAATTCACGGG....................................................................................	24	1	267.00	9.00	44.00	208.00	6.00
............................................................................AATGACACTGGAAGAATTCACGGG....................................................................................	24	1	266.00	25.00	127.00	76.00	38.00
............................................................................AATGGCACTxGAAGAATTCACGGG....................................................................................	23	1	266.00	16.00	166.00	50.00	34.00
............................................................................AATGGCACTAGAAGAATTCACGGG....................................................................................	24	1	263.00	18.00	131.00	90.00	24.00
............................................................................AATGGCACTGGAAGAGTTCACGGG....................................................................................	24	1	262.00	31.00	162.00	55.00	14.00
............................................................................AATGGCACTGGAAGCATTCACGGG....................................................................................	24	1	256.00	17.00	135.00	98.00	6.00
............................................................................AATGGTACTGGAAGAATTCACGGG....................................................................................	24	1	256.00	15.00	131.00	69.00	41.00
............................................................................AATGGCACTGGAAGGATTCACGGG....................................................................................	24	1	250.00	25.00	157.00	46.00	22.00
............................................................................AATGGCACTGGGAGAATTCACGGG....................................................................................	24	1	250.00	30.00	146.00	56.00	18.00
............................................................................AATGGCACTGAAAGAATTCACGGG....................................................................................	24	1	246.00	11.00	106.00	84.00	45.00
.............................................................................AATGCACTGGAAGAATTCAC.......................................................................................	20	1	243.00	19.00	16.00	141.00	67.00
............................................................................ACTGGCACTGGAAGAATTCACGGG....................................................................................	24	1	241.00	14.00	181.00	43.00	3.00
............................................................................AATGGCACTGCAAGAATTCACGGG....................................................................................	24	1	240.00	11.00	109.00	39.00	81.00
............................................................................AATTGCACTGGAAGAATTCACGG.....................................................................................	23	1	236.00	22.00	43.00	51.00	120.00
............................................................................AATAGCACTGGAAGAATTCAC.......................................................................................	21	1	235.00	9.00	13.00	208.00	5.00
............................................................................AATGGCACTGGAAGAACTCACGGG....................................................................................	24	1	232.00	15.00	159.00	50.00	8.00
......................................................................................................................CGTGATCTCTTAGTGGCATCT.............................................	21	1	229.00	7.00	153.00	17.00	52.00
............................................................................AATGGCACTGGAAAAATTCAC.......................................................................................	21	1	228.00	8.00	7.00	211.00	2.00
............................................................................AATGGCATTGGAAGAATTCACGGG....................................................................................	24	1	223.00	18.00	99.00	84.00	22.00
............................................................................AATGGCACTGGAAGAATTCACGGTT...................................................................................	25	1	223.00	154.00	7.00	54.00	8.00
............................................................................AATGGCACTGGAGGAATTCAC.......................................................................................	21	1	215.00	18.00	17.00	169.00	11.00
............................................................................AATGCCACTGGAAGAATTCAC.......................................................................................	21	1	213.00	15.00	14.00	125.00	59.00
............................................................................AATGGCACTGGAAGAATTCAAG......................................................................................	22	1	210.00	6.00	11.00	192.00	1.00
............................................................................AATTGCACTGGAAGAATTCACG......................................................................................	22	1	210.00	24.00	24.00	46.00	116.00
............................................................................AATGGCACTGGAAGAATTCCC.......................................................................................	21	1	206.00	17.00	15.00	167.00	7.00
............................................................................AATGGCACTGGAAGAATTCAAGG.....................................................................................	23	1	206.00	3.00	23.00	172.00	8.00
............................................................................AATGACACTGGAAGAATTCAC.......................................................................................	21	1	205.00	8.00	7.00	178.00	12.00
............................................................................AATGGCACTGGAxxAATTCACGGG....................................................................................	22	1	198.00	14.00	104.00	39.00	41.00
............................................................................AATGGCACTGGAAAAATTCACGGG....................................................................................	24	1	194.00	16.00	61.00	83.00	34.00
............................................................................AATGGCACTAGAAGAATTCAC.......................................................................................	21	1	191.00	4.00	8.00	178.00	1.00
............................................................................AATGGCACTGGAAGAATTCCCGG.....................................................................................	23	1	190.00	48.00	30.00	98.00	14.00
............................................................................GATGGCACTGGAAGAATTCAC.......................................................................................	21	1	187.00	8.00	9.00	168.00	2.00
...........................................................................CAATGGCACTGGAAGAATTCACGGG....................................................................................	25	1	186.00	23.00	110.00	42.00	11.00
............................................................................AACGGCACTGGAAGAATTCAC.......................................................................................	21	1	185.00	15.00	18.00	150.00	2.00
............................................................................AATCGCACTGGAAGAATTCAC.......................................................................................	21	1	183.00	17.00	21.00	113.00	32.00
............................................................................AATGGCACCGGAAGAATTCAC.......................................................................................	21	1	181.00	19.00	7.00	150.00	5.00
............................................................................AATGGCACTGGAAGAATTCC........................................................................................	20	1	180.00	6.00	3.00	169.00	2.00
............................................................................AATGGCACTGGAAGAATCCAC.......................................................................................	21	1	180.00	19.00	12.00	147.00	2.00

droVir3

CTT--AATGT--------T-----------------G-CT-------------TGC-TCTGCATCTCGGCACAGTTAATGGCACTGGAAGAATTCACGGGGTTTTTATA--ACACGCCCGTGATCTCTTAGTGGCATCTATGGTGCGGGA-TATT---------ACGTACAACAAAT----GAA	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
............................................................................AATGGCACTGGAAGAATTCACGGG....................................................................................	24	1	282694.00	80142.00	8137.00	5664.00	135078.00	53673.00
............................................................................AATGGCACTGGAAGAATTCACGG.....................................................................................	23	1	117006.00	42020.00	4231.00	576.00	49102.00	21077.00
............................................................................AATGGCACTGGAAGAATTCACG......................................................................................	22	1	58131.00	43943.00	6844.00	243.00	4702.00	2399.00
............................................................................AATGGCACTGGAAGAATTCAC.......................................................................................	21	1	20893.00	15753.00	3078.00	138.00	1130.00	794.00
............................................................................AATGGCACTGGAAGAATTCACGGGA...................................................................................	25	1	14676.00	2794.00	375.00	70.00	6865.00	4572.00
............................................................................AATGGCACTGGAAGAATTCA........................................................................................	20	1	12451.00	9515.00	2528.00	30.00	209.00	169.00
............................................................................AATGGCACTGGAAGAATTCACGGGT...................................................................................	25	1	10054.00	7653.00	619.00	108.00	1249.00	425.00
............................................................................AATGGCACTGGAAGAATTC.........................................................................................	19	1	5858.00	2513.00	697.00	4.00	1358.00	1286.00
............................................................................AATGGCACTGGAAGAATTCACGGGG...................................................................................	25	1	1833.00	81.00	6.00	4.00	1114.00	628.00
............................................................................AATGGCACTGGAAGAATTCACGGT....................................................................................	24	1	1647.00	1253.00	169.00	63.00	103.00	59.00
............................................................................AATGGCACTGGAAGAATTCCCGGG....................................................................................	24	1	1521.00	45.00	13.00	38.00	1147.00	278.00
............................................................................AATGGCACTGGAAGAATTCACGGGAA..................................................................................	26	1	1184.00	45.00	9.00	0.00	626.00	504.00
............................................................................AATGGCACTGGAAGAATTCACGT.....................................................................................	23	1	1096.00	874.00	125.00	6.00	50.00	41.00
............................................................................AATGGCACTGGAAGAATTCCCGG.....................................................................................	23	1	757.00	51.00	21.00	4.00	507.00	174.00
............................................................................AATGGCACTGGAAGAATTCACGGGTT..................................................................................	26	1	752.00	515.00	30.00	3.00	140.00	64.00
............................................................................AATTGCACTGGAAGAATTCACGGG....................................................................................	24	1	724.00	70.00	1.00	10.00	521.00	122.00
............................................................................AATGGCACTGGAAGAATTCACGGA....................................................................................	24	1	686.00	308.00	37.00	8.00	256.00	77.00
............................................................................AATGGCACTGGAAGAATTCACT......................................................................................	22	1	674.00	575.00	65.00	1.00	26.00	7.00
............................................................................AATGGCACTGGCAGAATTCACGGG....................................................................................	24	1	664.00	27.00	32.00	39.00	366.00	200.00
............................................................................AATGGCACTGGAAGAATTCACTGG....................................................................................	24	1	636.00	496.00	29.00	61.00	46.00	4.00
............................................................................AATGGCACTGGAAGAATTCACGGC....................................................................................	24	1	621.00	186.00	22.00	21.00	292.00	100.00
.............................................................................AATGCACTGGAAGAATTCACGGG....................................................................................	23	1	595.00	90.00	1.00	0.00	391.00	113.00
............................................................................AATGGCACTGGAAGAATTCACC......................................................................................	22	1	487.00	380.00	62.00	3.00	34.00	8.00
............................................................................AATGGCACTGTAAGAATTCACGGG....................................................................................	24	1	479.00	25.00	3.00	18.00	334.00	99.00
............................................................................AATGGCACTGGAAGAATTCACA......................................................................................	22	1	411.00	329.00	67.00	1.00	6.00	8.00
.............................................................................ATGGCACTGGAAGAATTCACGGG....................................................................................	23	1	346.00	117.00	11.00	6.00	151.00	61.00
............................................................................AATGTCACTGGAAGAATTCACGGG....................................................................................	24	1	339.00	46.00	0.00	10.00	225.00	58.00
............................................................................AATGGCACTGGAAGAATTCACGGGAT..................................................................................	26	1	332.00	74.00	5.00	1.00	155.00	97.00
............................................................................AATGGCACTGGAAGAATTCACGGGTTT.................................................................................	27	1	325.00	236.00	6.00	0.00	60.00	23.00
............................................................................AATCGCACTGGAAGAATTCACGGG....................................................................................	24	1	312.00	63.00	4.00	6.00	189.00	50.00
............................................................................AATGGCACTGGAAGAATTCACCGG....................................................................................	24	1	311.00	101.00	47.00	144.00	14.00	5.00
............................................................................AATGGCACTGGAAGAATTAACGGG....................................................................................	24	1	302.00	52.00	9.00	2.00	186.00	53.00
............................................................................AATGGCACTGGAAGAATTCACGTG....................................................................................	24	1	281.00	60.00	70.00	129.00	18.00	4.00
............................................................................AATGGCACTGGAAGAATTCACGGGC...................................................................................	25	1	281.00	94.00	14.00	6.00	109.00	58.00
................................................................................GCACTGGAAGAATTCACGGG....................................................................................	20	1	277.00	3.00	1.00	0.00	222.00	51.00
............................................................................AGTGGCACTGGAAGAATTCACGGG....................................................................................	24	1	276.00	46.00	2.00	7.00	159.00	62.00
............................................................................AATGGCACTGGAAGAATTCACTG.....................................................................................	23	1	272.00	249.00	12.00	5.00	4.00	2.00
............................................................................AATGGCACTGGAAGAATTCACGCG....................................................................................	24	1	264.00	87.00	86.00	73.00	11.00	7.00
............................................................................AATGGCACTGGAAGAATTCACGGTT...................................................................................	25	1	260.00	219.00	21.00	0.00	13.00	7.00
............................................................................AATGGCGCTGGAAGAATTCACGGG....................................................................................	24	1	246.00	86.00	15.00	10.00	93.00	42.00
............................................................................AATTGCACTGGAAGAATTCACGG.....................................................................................	23	1	237.00	40.00	3.00	2.00	151.00	41.00
............................................................................AATGGCACTGGCAGAATTCACGG.....................................................................................	23	1	236.00	9.00	7.00	4.00	145.00	71.00
............................................................................GATGGCACTGGAAGAATTCACGGG....................................................................................	24	1	223.00	80.00	5.00	7.00	94.00	37.00
............................................................................AATGGCACTGGAAGAATTCACAGG....................................................................................	24	1	219.00	105.00	15.00	27.00	55.00	17.00
............................................................................AATGGCACTGGAAGAATTCACGAG....................................................................................	24	1	214.00	107.00	19.00	24.00	41.00	23.00
......................................................................................................................CGTGATCTCTTAGTGGCATCTA............................................	22	1	213.00	54.00	21.00	34.00	57.00	47.00
............................................................................AATAGCACTGGAAGAATTCACGGG....................................................................................	24	1	207.00	51.00	7.00	8.00	102.00	39.00
............................................................................AATGGCACTGGAAGAATTCACGC.....................................................................................	23	1	196.00	82.00	24.00	1.00	69.00	20.00
.............................................................................AATGCACTGGAAGAATTCACGG.....................................................................................	22	1	192.00	55.00	0.00	0.00	102.00	35.00
............................................................................AATGGCACTGGAAGAATTCAAGGG....................................................................................	24	1	191.00	49.00	3.00	4.00	97.00	38.00
............................................................................AATGGCACTGGAAGAATACACGGG....................................................................................	24	1	191.00	170.00	5.00	4.00	10.00	2.00
............................................................................AATGGCACCGGAAGAATTCACGGG....................................................................................	24	1	188.00	49.00	15.00	6.00	94.00	24.00
............................................................................AATGGCACTGGAGGAATTCACGGG....................................................................................	24	1	177.00	78.00	17.00	10.00	54.00	18.00
............................................................................AATGGCACTGGAAGAATTCGCGGG....................................................................................	24	1	176.00	49.00	10.00	13.00	79.00	25.00
............................................................................AACGGCACTGGAAGAATTCACGGG....................................................................................	24	1	175.00	61.00	5.00	9.00	72.00	28.00
............................................................................AATGGCACTGGAAAAATTCACGGG....................................................................................	24	1	174.00	87.00	4.00	4.00	63.00	16.00
............................................................................AATGGCACTGGAAGAATTAACGG.....................................................................................	23	1	173.00	41.00	8.00	0.00	108.00	16.00
............................................................................AATGGCACTGGAAGAATTCACGA.....................................................................................	23	1	173.00	104.00	13.00	0.00	30.00	26.00
............................................................................AATGGCACTGGAAGAAATCACGGG....................................................................................	24	1	172.00	151.00	4.00	4.00	9.00	4.00
............................................................................AATGGCACTGGAAGGATTCACGGG....................................................................................	24	1	171.00	73.00	14.00	15.00	44.00	25.00
............................................................................AATGGCACTGGAAGAATCCACGGG....................................................................................	24	1	170.00	129.00	8.00	4.00	21.00	8.00
.............................................................................ATGGCACTGGAAGAATTCACGG.....................................................................................	22	1	164.00	67.00	6.00	0.00	65.00	26.00
............................................................................AATGGCACTGGAAGCATTCACGGG....................................................................................	24	1	162.00	75.00	46.00	34.00	3.00	4.00
............................................................................AATGGCACTGGGAGAATTCACGGG....................................................................................	24	1	153.00	61.00	19.00	18.00	35.00	20.00
............................................................................AATGTCACTGGAAGAATTCACG......................................................................................	22	1	153.00	34.00	1.00	1.00	91.00	26.00
............................................................................AATGCCACTGGAAGAATTCACGGG....................................................................................	24	1	153.00	41.00	2.00	4.00	79.00	27.00
............................................................................AATGGCACTGCAAGAATTCACGGG....................................................................................	24	1	152.00	26.00	5.00	7.00	89.00	25.00
............................................................................AATGGCACTTGAAGAATTCACGGG....................................................................................	24	1	150.00	26.00	6.00	24.00	78.00	16.00
............................................................................AATGGCACTGAAAGAATTCACGGG....................................................................................	24	1	147.00	44.00	3.00	9.00	67.00	24.00
............................................................................AATGGCACTGGAAGAATTCATGGG....................................................................................	24	1	144.00	53.00	13.00	6.00	51.00	21.00
............................................................................AATGGCACTGGAAGAGTTCACGGG....................................................................................	24	1	138.00	64.00	20.00	9.00	29.00	16.00
............................................................................AATGGCACTAGAAGAATTCACGGG....................................................................................	24	1	134.00	39.00	4.00	17.00	54.00	20.00
............................................................................AATGGCACTxGAAGAATTCACGGG....................................................................................	23	1	133.00	53.00	2.00	0.00	66.00	12.00
............................................................................AATGGCACTGGAAGAACTCACGGG....................................................................................	24	1	131.00	75.00	14.00	8.00	31.00	3.00
............................................................................AATTGCACTGGAAGAATTCACG......................................................................................	22	1	131.00	38.00	3.00	1.00	68.00	21.00
............................................................................AATGGCACTGGAAGAATTTACGGG....................................................................................	24	1	124.00	44.00	3.00	4.00	54.00	19.00
............................................................................AATGTCACTGGAAGAATTCACGG.....................................................................................	23	1	122.00	29.00	1.00	0.00	67.00	25.00
............................................................................AATGGTACTGGAAGAATTCACGGG....................................................................................	24	1	121.00	29.00	8.00	2.00	54.00	28.00
.............................................................................AATGCACTGGAAGAATTCACG......................................................................................	21	1	121.00	48.00	0.00	0.00	56.00	17.00
............................................................................AATGGCACTGGAAGAATTT.........................................................................................	19	1	120.00	89.00	22.00	0.00	5.00	4.00
............................................................................AATTGCACTGGAAGAATTCACGGGA...................................................................................	25	1	120.00	3.00	0.00	0.00	85.00	32.00
............................................................................AATGGCACTGGAxxAATTCACGGG....................................................................................	22	1	118.00	22.00	0.00	0.00	77.00	19.00
............................................................................AATGGCACTGGAAGAATT..........................................................................................	18	1	118.00	36.00	57.00	1.00	15.00	9.00
............................................................................AATGGCACTGGAAGAATTCATGG.....................................................................................	23	1	113.00	31.00	8.00	0.00	59.00	15.00
............................................................................AGTGGCACTGGAAGAATTCACGG.....................................................................................	23	1	111.00	23.00	3.00	1.00	60.00	24.00
............................................................................AATGACACTGGAAGAATTCACGGG....................................................................................	24	1	110.00	37.00	3.00	7.00	50.00	13.00
............................................................................AATGGCACTGGAAGAATTCACGGAA...................................................................................	25	1	108.00	12.00	3.00	0.00	47.00	46.00
................................................................................GCACTGGAAGAATTCACGG.....................................................................................	19	1	106.00	2.00	1.00	0.00	84.00	19.00
............................................................................AATGGCACTGGAAGAATTCGCGG.....................................................................................	23	1	104.00	41.00	9.00	0.00	37.00	17.00
............................................................................AATGGCACTGGAAGAATTCCCG......................................................................................	22	1	101.00	36.00	32.00	4.00	16.00	13.00
............................................................................AATGGCACTGGAAGAATTCAAGG.....................................................................................	23	1	101.00	30.00	6.00	1.00	33.00	31.00
...........................................................................CAATGGCACTGGAAGAATTCACGGG....................................................................................	25	1	101.00	54.00	11.00	6.00	17.00	13.00
............................................................................AATGGCACTGGAAAAATTCACGG.....................................................................................	23	1	100.00	56.00	3.00	0.00	29.00	12.00
............................................................................AATGGCACTCGAAGAATTCACGGG....................................................................................	24	1	99.00	33.00	7.00	13.00	32.00	14.00
............................................................................AATGGCACTGGAAGAATTCCCGGGA...................................................................................	25	1	99.00	1.00	1.00	1.00	80.00	16.00
............................................................................AATGGCACTGGAAGAATTCAA.......................................................................................	21	1	98.00	51.00	19.00	0.00	16.00	12.00
............................................................................AATGGCACTGGAAGAATTCACGTT....................................................................................	24	1	98.00	84.00	8.00	3.00	2.00	1.00
............................................................................AAGGGCACTGGAAGAATTCACGGG....................................................................................	24	1	97.00	8.00	71.00	10.00	6.00	2.00
............................................................................AATCGCACTGGAAGAATTCACGG.....................................................................................	23	1	96.00	20.00	2.00	0.00	59.00	15.00
............................................................................AATGGCACTGGAAGAATACACGG.....................................................................................	23	1	96.00	84.00	4.00	0.00	6.00	2.00
............................................................................AATGGCACTGGAAGACTTCACGGG....................................................................................	24	1	96.00	73.00	13.00	6.00	3.00	1.00

droMoj3

TTT--TCG-T-------------------------------------------TGTT-TCGCATCTCGGCACAGTTAATGGCACTGGAAGAATTCACGGGGTTTTT-CTA-ACACGCCCGTGATCTCTTAGTGGCATCTATGGTGCGGGA-TATT---------ACGTTCAACAACT----GAA	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
............................................................................AATGGCACTGGAAGAATTCACGGG....................................................................................	24	1	109379.00	76753.00	7999.00	3894.00	20733.00
............................................................................AATGGCACTGGAAGAATTCAC.......................................................................................	21	1	39709.00	27589.00	7838.00	3507.00	775.00
............................................................................AATGGCACTGGAAGAATTCACGG.....................................................................................	23	1	26639.00	22630.00	2218.00	860.00	931.00
............................................................................AATGGCACTGGAAGAATTCA........................................................................................	20	1	20761.00	12561.00	5567.00	2522.00	111.00
............................................................................AATGGCACTGGAAGAATTCACG......................................................................................	22	1	13927.00	10419.00	2224.00	1091.00	193.00
............................................................................AATGGCACTGGAAGAATTCACGGGT...................................................................................	25	1	7418.00	6495.00	474.00	212.00	237.00
............................................................................AATGGCACTGGAAGAATTC.........................................................................................	19	1	6304.00	3960.00	1613.00	723.00	8.00
............................................................................AATGGCACTGGAAGAATTCACGGGA...................................................................................	25	1	2994.00	2457.00	303.00	130.00	104.00
............................................................................AATGGCACTGGAAGAATTCACC......................................................................................	22	1	1472.00	1320.00	105.00	46.00	1.00
............................................................................AATGGCACTGGAAGAATTCACGGT....................................................................................	24	1	658.00	519.00	76.00	45.00	18.00
......................................................................................................................CGTGATCTCTTAGTGGCATCTA............................................	22	1	412.00	84.00	15.00	16.00	297.00
............................................................................AATGGCACTGGAAGAATTCACGGGTT..................................................................................	26	1	395.00	369.00	18.00	6.00	2.00
............................................................................AATGGCACTGGAAGCATTCACGGG....................................................................................	24	1	350.00	12.00	34.00	98.00	206.00
............................................................................AATGGCACTGGCAGAATTCACGGG....................................................................................	24	1	348.00	12.00	27.00	77.00	232.00
............................................................................AATGGCACTGGAAGAATTCACT......................................................................................	22	1	301.00	236.00	41.00	22.00	2.00
............................................................................AATGGCACTGGAAGAATTCACA......................................................................................	22	1	269.00	190.00	48.00	31.00	0.00
............................................................................AATGGCACTGGAAGAATTCACGTG....................................................................................	24	1	252.00	101.00	56.00	61.00	34.00
............................................................................AATGGCACTGGAAGAATT..........................................................................................	18	1	242.00	36.00	143.00	61.00	2.00
............................................................................AATGGCACTGGAAGAATTCACTGG....................................................................................	24	1	238.00	144.00	22.00	36.00	36.00
............................................................................AATGGCACTGGAAGAATTCACGCG....................................................................................	24	1	194.00	38.00	82.00	10.00	64.00
............................................................................AATGGCACTGGAAGAATTCACGGC....................................................................................	24	1	185.00	113.00	33.00	17.00	22.00
............................................................................AATGGCACTGGAAGAATTCACGGA....................................................................................	24	1	177.00	144.00	19.00	8.00	6.00
............................................................................AATGGCACTGGAAGAATTCACGT.....................................................................................	23	1	162.00	135.00	22.00	5.00	0.00
............................................................................AATGGCACTGGAAGAATTCACCGG....................................................................................	24	1	152.00	43.00	23.00	25.00	61.00
............................................................................AATGGCACTGGAAGAATTCCCGGG....................................................................................	24	1	142.00	5.00	16.00	46.00	75.00
............................................................................AATGGCACTGGAAGAATTCACAGG....................................................................................	24	1	140.00	63.00	12.00	11.00	54.00
............................................................................AATGGCACTGGGAGAATTCACGGG....................................................................................	24	1	137.00	33.00	17.00	5.00	82.00
............................................................................AAGGGCACTGGAAGAATTCACGGG....................................................................................	24	1	133.00	15.00	43.00	8.00	67.00
............................................................................AATTGCACTGGAAGAATTCACGGG....................................................................................	24	1	132.00	127.00	3.00	1.00	1.00
............................................................................AATGGCACTGGAAGCATTCAC.......................................................................................	21	1	129.00	5.00	45.00	69.00	10.00
............................................................................AATGGCACTGGAAGAATTCACGGGC...................................................................................	25	1	129.00	89.00	16.00	6.00	18.00
............................................................................AATGGCACTGGAAGGATTCACGGG....................................................................................	24	1	127.00	20.00	19.00	12.00	76.00
............................................................................AATGGCACTGGAAGCATTCA........................................................................................	20	1	120.00	2.00	43.00	74.00	1.00
............................................................................AATGGCACTGGAAGAATTCT........................................................................................	20	1	119.00	68.00	33.00	18.00	0.00
............................................................................AATGGCACTGGCAGAATTCAC.......................................................................................	21	1	113.00	1.00	37.00	66.00	9.00
............................................................................AATGGCACTGGAAGAATTT.........................................................................................	19	1	109.00	64.00	32.00	13.00	0.00
............................................................................AATGGCACTGGAAGAATTCACGGGTTT.................................................................................	27	1	108.00	98.00	7.00	3.00	0.00
.............................................................................AATGCACTGGAAGAATTCACGGG....................................................................................	23	1	108.00	106.00	1.00	0.00	1.00
............................................................................AATGGCACTGGAGGAATTCACGGG....................................................................................	24	1	104.00	64.00	16.00	4.00	20.00
............................................................................AATGGCACTGGAAGAATTCGCGGG....................................................................................	24	1	101.00	46.00	12.00	5.00	38.00
............................................................................AATGGCACTGGAAGAATTCAAGGG....................................................................................	24	1	101.00	26.00	11.00	3.00	61.00
............................................................................AATGGCACTAGAAGAATTCACGGG....................................................................................	24	1	99.00	26.00	7.00	20.00	46.00
............................................................................GATGGCACTGGAAGAATTCACGGG....................................................................................	24	1	98.00	64.00	8.00	6.00	20.00
............................................................................AATGGCGCTGGAAGAATTCACGGG....................................................................................	24	1	96.00	49.00	11.00	6.00	30.00
............................................................................AATGTCACTGGAAGAATTCACGGG....................................................................................	24	1	94.00	87.00	0.00	1.00	6.00
............................................................................AATGGCACTGGCAGAATTCA........................................................................................	20	1	90.00	1.00	30.00	55.00	4.00
............................................................................AATGGCACTGGAAGAATTCAA.......................................................................................	21	1	87.00	25.00	42.00	16.00	4.00
.............................................................................ATGGCACTGGAAGAATTCACGGG....................................................................................	23	1	87.00	60.00	9.00	4.00	14.00
............................................................................AATGGCACTGGAAGAATTCAT.......................................................................................	21	1	84.00	22.00	40.00	20.00	2.00
............................................................................AATGGCACTGGAAGAATTCATGGG....................................................................................	24	1	82.00	45.00	11.00	3.00	23.00
............................................................................AATAGCACTGGAAGAATTCACGGG....................................................................................	24	1	82.00	42.00	11.00	9.00	20.00
............................................................................AATGGCACTGGAAGAATTCACGGTT...................................................................................	25	1	82.00	69.00	7.00	6.00	0.00
............................................................................AATGGCACTGGAAGACTTCACGGG....................................................................................	24	1	81.00	17.00	26.00	13.00	25.00
............................................................................AATGGCACTGGAAGAATTCACGAG....................................................................................	24	1	81.00	42.00	12.00	5.00	22.00
......................................................................................................................CGTGATCTCTTAGTGGCATCT.............................................	21	1	80.00	16.00	7.00	1.00	56.00
............................................................................AATGGCACTGGAAGTATTCACGGG....................................................................................	24	1	80.00	5.00	13.00	9.00	53.00
............................................................................AACGGCACTGGAAGAATTCACGGG....................................................................................	24	1	78.00	41.00	11.00	8.00	18.00
............................................................................AATGGCACTTGAAGAATTCACGGG....................................................................................	24	1	76.00	64.00	2.00	4.00	6.00
............................................................................AATGGCACTGGAAGAATTCCC.......................................................................................	21	1	74.00	2.00	20.00	47.00	5.00
............................................................................AATGGCACCGGAAGAATTCACGGG....................................................................................	24	1	73.00	34.00	10.00	7.00	22.00
............................................................................AATGGCACTGGACGAATTCACGGG....................................................................................	24	1	71.00	7.00	9.00	7.00	48.00
............................................................................AATGGCACTGGAAGAGTTCACGGG....................................................................................	24	1	71.00	29.00	12.00	5.00	25.00
............................................................................AATGGCACTGTAAGAATTCACGGG....................................................................................	24	1	68.00	59.00	4.00	3.00	2.00
............................................................................AAGGGCACTGGAAGAATTCAC.......................................................................................	21	1	67.00	7.00	47.00	13.00	0.00
............................................................................AATCGCACTGGAAGAATTCACGGG....................................................................................	24	1	67.00	55.00	6.00	4.00	2.00
............................................................................AATGGCACTGGGAGAATTCAC.......................................................................................	21	1	66.00	10.00	29.00	21.00	6.00
............................................................................AATGGTACTGGAAGAATTCACGGG....................................................................................	24	1	63.00	35.00	5.00	3.00	20.00
...........................................................................CAATGGCACTGGAAGAATTCACGGG....................................................................................	25	1	62.00	35.00	4.00	5.00	18.00
............................................................................AATGGCACTGGAAGAATTAACGGG....................................................................................	24	1	61.00	31.00	10.00	3.00	17.00
............................................................................AATTGCACTGGAAGAATTCAC.......................................................................................	21	1	60.00	54.00	4.00	2.00	0.00
............................................................................AATGGCACTGGGAGAATTCA........................................................................................	20	1	60.00	10.00	27.00	22.00	1.00
............................................................................AGTGGCACTGGAAGAATTCACGGG....................................................................................	24	1	57.00	26.00	8.00	6.00	17.00
............................................................................AATGTCACTGGAAGAATTCAC.......................................................................................	21	1	55.00	51.00	2.00	2.00	0.00
............................................................................AATGGCACTGGAAGAATTCACGC.....................................................................................	23	1	55.00	45.00	6.00	3.00	1.00
............................................................................AATGGCACTCGAAGAATTCACGGG....................................................................................	24	1	54.00	27.00	11.00	1.00	15.00
............................................................................AATGGCACTGGAAGACTTCAC.......................................................................................	21	1	54.00	5.00	26.00	21.00	2.00
............................................................................AATGGCACTGGAAGAACTCACGGG....................................................................................	24	1	53.00	15.00	12.00	8.00	18.00
............................................................................AATGGCACTGGTAGAATTCACGGG....................................................................................	24	1	53.00	4.00	15.00	5.00	29.00
............................................................................AATGGAACTGGAAGAATTCACGGG....................................................................................	24	1	52.00	29.00	7.00	0.00	16.00
............................................................................AATGACACTGGAAGAATTCACGGG....................................................................................	24	1	52.00	35.00	4.00	0.00	13.00
............................................................................AATGGCACTGGAAGAATTCACGGGAA..................................................................................	26	1	52.00	43.00	6.00	2.00	1.00
.............................................................................TTGGCACTGGGAGAATTCAC.......................................................................................	20	1	51.00	11.00	23.00	17.00	0.00
............................................................................AATGGCACTGGAAGAATTCACTG.....................................................................................	23	1	50.00	32.00	5.00	12.00	1.00
............................................................................AATGCCACTGGAAGAATTCACGGG....................................................................................	24	1	50.00	42.00	4.00	0.00	4.00
............................................................................AATGGCATTGGAAGAATTCACGGG....................................................................................	24	1	49.00	25.00	7.00	3.00	14.00
............................................................................AATGGCACTGGAAGAATCCACGGG....................................................................................	24	1	49.00	21.00	8.00	3.00	17.00
.............................................................................TTGGCACTGGGAGAATTCA........................................................................................	19	1	47.00	9.00	25.00	13.00	0.00
............................................................................AATGGCACTGGAATAATTCACGGG....................................................................................	24	1	47.00	38.00	0.00	2.00	7.00
............................................................................AATGGCAATGGAAGAATTCACGGG....................................................................................	24	1	47.00	11.00	13.00	3.00	20.00
............................................................................AATGGCACTGGAGGAATTCAC.......................................................................................	21	1	46.00	23.00	11.00	11.00	1.00
............................................................................AATGGCACTGAAAGAATTCACGGG....................................................................................	24	1	46.00	29.00	1.00	3.00	13.00
............................................................................AATGGCGCTGGAAGAATTCAC.......................................................................................	21	1	45.00	30.00	9.00	5.00	1.00
............................................................................AATGGCACTTGAAGAATTCAC.......................................................................................	21	1	45.00	41.00	1.00	3.00	0.00
............................................................................AAAGGCACTGGAAGAATTCACGGG....................................................................................	24	1	43.00	7.00	16.00	5.00	15.00
............................................................................ACTGGCACTGGAAGAATTCACGGG....................................................................................	24	1	43.00	12.00	1.00	11.00	19.00
............................................................................AATGGCACTAGAAGAATTCAC.......................................................................................	21	1	42.00	11.00	12.00	19.00	0.00
............................................................................AATGGCACTGGAAGGATTCAC.......................................................................................	21	1	42.00	8.00	19.00	12.00	3.00
............................................................................AATGGCACTGGAAGCATTC.........................................................................................	19	1	42.00	0.00	16.00	26.00	0.00
............................................................................AATGGCACTxGAAGAATTCACGGG....................................................................................	23	1	41.00	36.00	4.00	0.00	1.00
............................................................................AATGGCACTGGAAGAATTCACGA.....................................................................................	23	1	39.00	32.00	5.00	2.00	0.00
............................................................................AATGGCACTGGAAGAATTCCCG......................................................................................	22	1	39.00	5.00	6.00	28.00	0.00

droGri2

CTA--CCTGAATTTCTGCTGGGTAAGTTATTTTTTTCAAGTGATTTTTCTTGTTGT-TCTGCATCTCGGCACAGTTAATGGCACTGGAAGAATTCACGGGGTTATTTTAACAC--GCCCGTGATCTCTTAGTGGCATCTATGGTGCGGGA-TATT---------ACGTGCAGA---------AA	Size	Hit Count	Total Norm	V109 Male body
............................................................................AATGGCACTGGAAGAATTCACGGG....................................................................................	24	1	3562.00	3562.00
............................................................................AATGGCACTGGAAGAATTCACG......................................................................................	22	1	3497.00	3497.00
............................................................................AATGGCACTGGAAGAATTCAC.......................................................................................	21	1	2257.00	2257.00
............................................................................AATGGCACTGGAAGAATTCA........................................................................................	20	1	1735.00	1735.00
............................................................................AATGGCACTGGAAGAATTCACGG.....................................................................................	23	1	1588.00	1588.00
............................................................................AATGGCACTGGAAGAATTC.........................................................................................	19	1	530.00	530.00
............................................................................AATGGCACTGGAAGAATTCACGGGT...................................................................................	25	1	117.00	117.00
............................................................................AATGGCACTGGAAGAATTCACGGGA...................................................................................	25	1	94.00	94.00
............................................................................AATGGCACTGGAAGAATTCACGGT....................................................................................	24	1	45.00	45.00
............................................................................AATGGCACTGGAAGAATCCACG......................................................................................	22	1	45.00	45.00
............................................................................AATGGCACTGGAAGAATCCACGGG....................................................................................	24	1	41.00	41.00
............................................................................AATGGCACTGGAAGAATACACGGG....................................................................................	24	1	36.00	36.00
............................................................................AATGGCACTGGAAGAATCCAC.......................................................................................	21	1	31.00	31.00
............................................................................AATGGCACTGGAAGAATTCACGCG....................................................................................	24	1	30.00	30.00
............................................................................AATGGCACTGGAAGAATACACG......................................................................................	22	1	29.00	29.00
............................................................................AATGGCACTGGAAGAATTCACT......................................................................................	22	1	28.00	28.00
............................................................................AATGGCACTGGAAGAATTCACGTG....................................................................................	24	1	26.00	26.00
......................................................................................................................CGTGATCTCTTAGTGGCATCTA............................................	22	1	24.00	24.00
............................................................................AATGGCACTGGAAGAATTCACGT.....................................................................................	23	1	23.00	23.00
............................................................................AATGGCACTGGAAGAATTCACGAG....................................................................................	24	1	23.00	23.00
............................................................................AATGGCCCTGGAAGAATTCACG......................................................................................	22	1	19.00	19.00
............................................................................AATGGCACCGGAAGAATTCACGGG....................................................................................	24	1	18.00	18.00
............................................................................AATGGCACTGGAAGAATGCACG......................................................................................	22	1	16.00	16.00
............................................................................AATGGCACTGGAAGAATACAC.......................................................................................	21	1	15.00	15.00
............................................................................AATGGCACTGGAAGAATCCA........................................................................................	20	1	15.00	15.00
............................................................................AATGGCACTGGAAGAATGCAC.......................................................................................	21	1	15.00	15.00
............................................................................AATGGCACCGGAAGAATTCACG......................................................................................	22	1	15.00	15.00
............................................................................AATGGCACTGGAAGAATTCACA......................................................................................	22	1	15.00	15.00
............................................................................AATGGCACTGGAAGAATACA........................................................................................	20	1	13.00	13.00
............................................................................AATGGCCCTGGAAGAATTCACGGG....................................................................................	24	1	12.00	12.00
............................................................................AATGGCACTGGAAGAATCCACGG.....................................................................................	23	1	12.00	12.00
............................................................................AATGGCACTGGAAGAATTCACGC.....................................................................................	23	1	12.00	12.00
............................................................................AACGGCACTGGAAGAATTCACG......................................................................................	22	1	12.00	12.00
............................................................................AATGGCACTGGAAGAATGCACGGG....................................................................................	24	1	11.00	11.00
............................................................................AATGGAACTGGAAGAATTCACG......................................................................................	22	1	11.00	11.00
............................................................................AATGGCACTGGAAGAATTCACGA.....................................................................................	23	1	11.00	11.00
............................................................................AATGGCCCTGGAAGAATTCAC.......................................................................................	21	1	11.00	11.00
............................................................................AATGGCACAGGAAGAATTCACG......................................................................................	22	1	10.00	10.00
............................................................................AATGGTACTGGAAGAATTCACGGG....................................................................................	24	1	10.00	10.00
............................................................................AACGGCACTGGAAGAATTCACGGG....................................................................................	24	1	10.00	10.00
............................................................................AATGGAACTGGAAGAATTCACGGG....................................................................................	24	1	9.00	9.00
............................................................................AATGGCACCGGAAGAATTCACGG.....................................................................................	23	1	9.00	9.00
............................................................................AATGGAACTGGAAGAATTCAC.......................................................................................	21	1	9.00	9.00
............................................................................AATGGCACCGGAAGAATTCAC.......................................................................................	21	1	9.00	9.00
............................................................................AATGGCACTGGAAGAATGCACGG.....................................................................................	23	1	9.00	9.00
............................................................................AATGCCACTGGAAGAATTCACG......................................................................................	22	1	9.00	9.00
............................................................................AATGGCGCTGGAAGAATTCACG......................................................................................	22	1	9.00	9.00
............................................................................AATCGCACTGGAAGAATTCACGGG....................................................................................	24	1	8.00	8.00
............................................................................AATGGCACCGGAAGAATTCA........................................................................................	20	1	8.00	8.00
............................................................................AATGGCCCTGGAAGAATTCA........................................................................................	20	1	8.00	8.00
............................................................................AATGGCACAGGAAGAATTCACGGG....................................................................................	24	1	8.00	8.00
............................................................................AATGGGACTGGAAGAATTCACGGG....................................................................................	24	1	8.00	8.00
............................................................................AATGGCACTGGAAGAATT..........................................................................................	18	1	7.00	7.00
............................................................................AATGGCACTGGAAGAATACACGG.....................................................................................	23	1	7.00	7.00
............................................................................AATGGCACTGGAAGAATTCACGGGTT..................................................................................	26	1	7.00	7.00
............................................................................AATGGCACTGGAAGAATTCACGGTT...................................................................................	25	1	7.00	7.00
............................................................................AATGGAACTGGAAGAATTCACGG.....................................................................................	23	1	7.00	7.00
.............................................................................AATGCACTGGAAGAATTCACG......................................................................................	21	1	7.00	7.00
............................................................................AATTGCACTGGAAGAATTCAC.......................................................................................	21	1	6.00	6.00
............................................................................AAAGGCACTGGAAGAATTCACGGG....................................................................................	24	1	6.00	6.00
............................................................................AATCGCACTGGAAGAATTCAC.......................................................................................	21	1	6.00	6.00
............................................................................AATGGGACTGGAAGAATTCACG......................................................................................	22	1	6.00	6.00
............................................................................ACTGGCACTGGAAGAATTCACGGG....................................................................................	24	1	6.00	6.00
......................................................................................................................CGTGATCTCTTAGTGGCATCT.............................................	21	1	6.00	6.00
............................................................................AATGGCCCTGGAAGAATTCACGG.....................................................................................	23	1	6.00	6.00
............................................................................AATGGCACTGGAAGAATTCAA.......................................................................................	21	1	6.00	6.00
............................................................................AATGGCACTGGAAGAATTCACAGG....................................................................................	24	1	6.00	6.00
............................................................................ACTGGCACTGGAAGAATTCACG......................................................................................	22	1	6.00	6.00
............................................................................AATGGCACTGGAAGAATTCACC......................................................................................	22	1	5.00	5.00
............................................................................AATGGCACTGGAAGACTTCACG......................................................................................	22	1	5.00	5.00
............................................................................AATGGCACTGGAAGAATTCCCGGG....................................................................................	24	1	5.00	5.00
............................................................................AACGGCACTGGAAGAATTCAC.......................................................................................	21	1	5.00	5.00
............................................................................AATGGCACTGGAAGAATTCACGGC....................................................................................	24	1	5.00	5.00
............................................................................AATGGCACTGGAAGAATTCACGGGC...................................................................................	25	1	5.00	5.00
.............................................................................ATGGCACTGGAAGAATTCACGGG....................................................................................	23	1	5.00	5.00
............................................................................AATGGCACTGGAAGAATTCAAGGG....................................................................................	24	1	5.00	5.00
............................................................................AATGGTACTGGAAGAATTCAC.......................................................................................	21	1	5.00	5.00
............................................................................AATGGCACTGGAAGAATTCACGGA....................................................................................	24	1	5.00	5.00
............................................................................AAAGGCACTGGAAGAATTCACG......................................................................................	22	1	5.00	5.00
............................................................................AATGGCTCTGGAAGAATTCACG......................................................................................	22	1	5.00	5.00
............................................................................AATGGCACTGGAAGAATGCA........................................................................................	20	1	5.00	5.00
............................................................................AATGGCACTGGAAGAACTCAC.......................................................................................	21	1	5.00	5.00
............................................................................AATTGCACTGGAAGAATTCACGGG....................................................................................	24	1	5.00	5.00
............................................................................AATGGCACTGGAAGAATTCACTGG....................................................................................	24	1	5.00	5.00
............................................................................AAGGGCACTGGAAGAATTCACGGG....................................................................................	24	1	5.00	5.00
............................................................................AATGGGACTGGAAGAATTCAC.......................................................................................	21	1	5.00	5.00
............................................................................AATGGCACTGGAAGAATCC.........................................................................................	19	1	5.00	5.00
............................................................................AATGGAACTGGAAGAATTCA........................................................................................	20	1	5.00	5.00
............................................................................AATGGCACTGGAAGAATTCCCG......................................................................................	22	1	4.00	4.00
............................................................................AATGGCTCTGGAAGAATTCACGGG....................................................................................	24	1	4.00	4.00
............................................................................AATGGCACGGGAAGAATTCACGGG....................................................................................	24	1	4.00	4.00
............................................................................AATGGCACTGGAAGAATTCAAG......................................................................................	22	1	4.00	4.00
............................................................................AATGGCACGGGAAGAATTCACG......................................................................................	22	1	4.00	4.00
............................................................................AATGGCTCTGGAAGAATTCAC.......................................................................................	21	1	4.00	4.00
............................................................................AATGGTACTGGAAGAATTCACG......................................................................................	22	1	4.00	4.00
............................................................................AATGACACTGGAAGAATTCACG......................................................................................	22	1	4.00	4.00
............................................................................ACTGGCACTGGAAGAATTCACGG.....................................................................................	23	1	4.00	4.00
............................................................................AATCGCACTGGAAGAATTCACG......................................................................................	22	1	4.00	4.00
.............................................................................AATGCACTGGAAGAATTCACGGG....................................................................................	23	1	4.00	4.00
............................................................................AATGGCACTGGAAGCATTCACG......................................................................................	22	1	4.00	4.00
............................................................................AATGGCACTGCAAGAATTCAC.......................................................................................	21	1	4.00	4.00

Generated: 04/20/2012 at 05:18:27 EDT

dme-mir-263a

chr2L:11953410-11953503 -

Known_mirbase

intergenic

20-way Fast Statistical Aligner (FSA) re-alignment

Visually pleasing best hits from LASTZ and MAF

Legend

Re-alignment after removal of non-confident orthologs

20-way Secondary Structure

Small RNA-seq read pileup