dme-mir-2535b- 12- and 20-way alignments

dme-mir-2535b	chrX:21169302-21169372 -	Known_mirbase
[View on miRBase]	[View on UCSC Genome Browser {Cornell Mirror}]	mirtron

Legend:

   mature strand at position 21169306-21169327
   star strand at position 21169348-21169372
   mutations
   read mismatches
   coordinate mismatch (possible incorrect ortholog)

12-way Fast Statistical Aligner re-alignment (From MAFs)

Species	Coordinate	Alignment
dm3	chrX:21169287-21169387 -	ACGTACATCACTAAGGTAAGTGACTATGCCGGGATTGTGGTTAT---TGAACTTAGCGTCTCCACT--CACGGCATTT--CATTCACTTGCAGTACATCACCGCCGAG
droSim1	chrX:12918307-12918407 +	ACGTACATCACCAAGGTAAGTGACTATGCCGGGATTGTGGTTAT---TATACTTAGCGTCTCCACT--CACGGCATTT--CATTCACTTGCAGTACATCACCGCCGAG
droSec1	super_8:3476294-3476394 -	ACGTACATCACCAAGGTAAGTGACTATGCCGGGATTGTGGTTAT---TATACTTAGAGTCTCCACT--CACGGCATTT--CATTCACTTGCAGTACATCACCGCCGAG
droYak2	chrX:20345010-20345110 -	ACGTACATCACCAAGGTAAGTGACAATGCCGGGATTGTGGTTAT---TGAAAATACCTTCTCCACT--CACGGCATTA--TATTCACTTGCAGTACATCACCGCCGAG
droEre2	scaffold_4690:17698644-17698744 -	ACGTACATCACCAAGGTAAGTGACAGTGCCGGGATTGTGGTTAT---TAAAAATACCTTCTCCACT--CACGGCATTT--CATTCACTTGCAGTACATCACCGCCGAG
droAna3	Unknown	ACTTATATTACAAAGGTAAGTAT------------------------------------------C--CAAGTTATTTC-CTTCAATTTTCAGTTCATAACCGCCGAA
dp4	Unknown	ACGTACATCACAAAGGTAAGTGGCTATGCCGCGACGG----GAT---TGAACCTCTCATCTCTTCT--CACGGCATAT--CAATCACTTGCAGTACATCACCGCCGAG
droPer1	Unknown	ACGTACATCACAAAGGTAAGTGGCTATGCCGCGACGG----GAT---TGAACCTCTCATCTCTTCT--CACGGCATAT--CAATCACTTGCAGTACATCACCGCCGAG
droWil1	Unknown	ACTTACATTACCAAGGTGAGT------------------------------------------------------TTT--GTTTTTCTTACAGTACATTACATCGGAG
droVir3	Unknown	ACGTGCATTACCAAGGTAAGC--------------------------------------CTCTTCT--CACGACATCCCTTAATCCCTTGCAGTACGTTGCCAACGAA
droMoj3	Unknown	ACATGCATAACCAGGGTAAGTGCTCA-GCTGCTtTTtTttTttT---tgttTTTTttT---------------TtTTT--CGTCGCCTTACAGTACATCTCCAAGGAG
droGri2	scaffold_15203:11132616-11132716 +	ACCTACATTACTAAGGTATGT------TCGATGATTTTGGTTTTTTTTGGCTTTACTTTCACCGTTTACACGACAATTT-CATCCTTTTGCAGTACGTGACCAGTGAG

20-way Fast Statistical Aligner re-alignment (Top LASTZ hits)

Species	Coordinate	Lastz Id	Alignment
dm3	chrX:21169287-21169387 -	NA	ACGTACATCACTAAGGTAAGTGACTATGCCGGGATTGTGGT---TA---TTGAA---CTT------AGC-G-TCTCCACTC--ACGGC-ATTTC--ATTC-ACTTGC-AGTACATCACCGCCGAG
droSim1	chrX:12918307-12918407 +	3	ACGTACATCACCAAGGTAAGTGACTATGCCGGGATTGTGGT---TA---TTATA---CTT------AGC-G-TCTCCACTC--ACGGC-ATTTC--ATTC-ACTTGC-AGTACATCACCGCCGAG
droSec1	super_8:3476294-3476394 -	5	ACGTACATCACCAAGGTAAGTGACTATGCCGGGATTGTGGT---TA---TTATA---CTT------AGA-G-TCTCCACTC--ACGGC-ATTTC--ATTC-ACTTGC-AGTACATCACCGCCGAG
droYak2	chrX:20345010-20345110 -	5	ACGTACATCACCAAGGTAAGTGACAATGCCGGGATTGTGGT---TA---TTGAA---AAT------ACC-T-TCTCCACTC--ACGGC-ATTAT--ATTC-ACTTGC-AGTACATCACCGCCGAG
droEre2	scaffold_4690:17698644-17698744 -	4	ACGTACATCACCAAGGTAAGTGACAGTGCCGGGATTGTGGT---TA---TTAAA---AAT------ACC-T-TCTCCACTC--ACGGC-ATTTC--ATTC-ACTTGC-AGTACATCACCGCCGAG
droEug1	scf7180000408193:313028-313128 +	1	ACGTATATCACCAAGGTAAGTGGCTATGCCGGGATCGTGGT---TG---ATCTA---TGT------ACC-T-TCTCCACTC--ACGGC-ATTTC--ATTC-ACTTGT-AGTACATCACCGCTGAA
droBia1	scf7180000302187:362231-362333 +	2	ACGTACATCACCAAAGTAAGTGGCCATGCCGGGATTGTGGT---TT---AA------CC-AGAGGTTCC-T-CCTCCACTC--ACGGC-ATTTC--ATTC-ACTTGC-AGTACATCACCGCCGAG
droTak1	scf7180000415158:278082-278185 +	2	ACGTACATCACCAAGGTAAGTGGCTATGCCGGGATTGTGGT---TT---ACAATAGAAAG------ATC-C-CCTCCACTC--ACGGC-ATTTC--ATTC-ACTTGC-AGTACATCACCGCCGAG
droEle1	scf7180000490214:747380-747480 +	1	ACGTACATCACCAAGGTAAGTGGGTATGCCGGGACTGTGGT---TC---TAAAT---GCC------ATC-A-CCACCACTC--ACGGC-ATTTC--ATTC-ACTTGC-AGTACATCACCGCCGAG
droRho1	scf7180000780082:43771-43867 +	4	ACGTACATCACCAAGGTAAGTGGGTATGCCGGGATTGTGGT---TA---AT-------AC------ACC-T-CCTCCACTC--ACGGC-ATTTC--ATTC-ACTTGC-AGTACATCACCGCCGAG
droFic1	scf7180000454077:620842-620934 -	6	ACGTACATCACCAAGGTAAGTTTATATTTATTTGTGT-------TGG----------TGT------ACC-T-CCTCCACTC--ACAAC-ATTTC--ATTC-ACCTGC-AGTTCATTACCGCCGAG
droKik1	scf7180000302395:540407-540502 -	7	ACGTACATCACCAAGGTAAGTCTC-----CGAGAACGG------GAACGAA------TC-GCAC--AGATCCATATCTGTA--TC--T-GTATC--CTTC-TTGTGT-AGTACATCACCGCCGAG
droAna3	scaffold_13334:1052535-1052576 +	2	AT-----------------------------------------------------------------------------CC--AAGTT-ATTTC--CTTCAATTTTC-AGTTCATAACCGCCGAA
droBip1	scf7180000396733:700642-700737 +	2	ACGTATATAACAAAGGTGAGAGG----GACGAGGT--CTATAGCTT---TCGG---GTTG------TGT-A----ATACTT--TAAAT-ATTTT--ATTCCAATTTC-AGTATATAACCGCCGAA
dp4	chrXL_group1a:9058690-9058790 +	2	ACGTACATCACAAAGGTAAGTGGCTATGCCGCGACGG-------GATTGAA------CC-TCTC--ATCTC-TCACCTCTC--ACGGC-ATATC--AATC-ACTTGC-AGTACATCACCGCCGAG
droPer1	super_15:1452144-1452244 +	2	ACGTACATCACAAAGGTAAGTGGCTATGCCGCGACGG-------GATTGAA------CC-TCTC--ATCTC-TCACCTCTC--ACGGC-ATATC--AATC-ACTTGC-AGTACATCACCGCCGAG
droWil1	scaffold_180708:10817645-10817740 +	2	TTGCCCATAGTTTTCCTGTTAGCCTATGTGGTG------CC---TA---GCTAT---TTC------ATG-G-TCCGCACTA--TGTGC-GATGA--GCTT-GATCGTAGCTTCATGAAGACCCTC
droVir3	scaffold_12970:7928311-7928357 -	6	-------------------------------------------------------------------------CTCTTCTC--ACGAC-ATCCCTTAATC-CCTTGC-AGTACGTTGCCAACGAA
droMoj3	scaffold_6482:1598771-1598842 +	2	T----------------AATTGGCTCAGCTGCTATTATAAT---AA---TACAA---TTT------T-----------------AATT-ATTTC--GTCG-CCTTAC-AGTACATCTCCAAGGAG
droGri2	scaffold_15203:11132616-11132716 +	3	ACCTACATTACTAAGGTATGTT------CGATGATTTTGGT---TT---TTTTTGGCTTT------ACT-T-TCACCGTTTACACGACAATTTC--ATCC-TTTTGC-AGTACGTGACCAGTGAG

[View All Possible Orthologs]

Original 12-way multiz alignment with reads super-imposed

Species

Alignment

dm3

ACGTACATCACTAAGGTAAGTGACTATGCCGGGATTGTGGTTAT---TGAACTTAGCGTCTCCACT--CACGGCATTT--CATTCACTTGCAGTACATCACCGCCGAG

Size

Hit Count

Total Norm

droSim1

ACGTACATCACCAAGGTAAGTGACTATGCCGGGATTGTGGTTAT---TATACTTAGCGTCTCCACT--CACGGCATTT--CATTCACTTGCAGTACATCACCGCCGAG	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
...............................................................ACT--CACGGCATTT--CATTCACTTG..................	23	1	358.00	0.00	294.00	39.00	25.00
...............................................................ACT--CACGGCATTT--CATTCACTT...................	22	1	89.00	3.00	79.00	5.00	2.00
...............................................................ACT--CACGGCATTT--CATTCACT....................	21	1	81.00	3.00	73.00	2.00	3.00
...............................................................ACT--CACGGCATTT--CATTCACTTGCAG...............	26	1	50.00	2.00	34.00	5.00	9.00
...............................................................ACT--CACGGCATTT--CATTCACTTGCA................	25	1	34.00	3.00	22.00	6.00	3.00
...............................................................ACT--CACGGCATTT--CATTCACTTGC.................	24	1	34.00	0.00	29.00	5.00	0.00
...............GTAAGTGACTATGCCGGGAT.........................................................................	20	1	31.00	0.00	24.00	6.00	1.00
...............GTAAGTGACTATGCCGGGATTGTGG....................................................................	25	1	29.00	1.00	6.00	4.00	18.00
...............GTAAGTGACTATGCCGGGATT........................................................................	21	1	28.00	0.00	18.00	7.00	3.00
...............GTAAGTGACTATGCCGGGA..........................................................................	19	1	13.00	1.00	8.00	1.00	3.00
...............................................................ACT--CACGGCATTT--CATTCAC.....................	20	1	11.00	0.00	10.00	1.00	0.00
...............................................................ACT--CACGGCATTT--CATTCACTTGCAGT..............	27	1	8.00	5.00	1.00	0.00	2.00
...............................................................ACT--CACGGCATTT--CATTCACTGG..................	23	1	6.00	0.00	4.00	1.00	1.00
...............................................................ACT--CACGGCATTT--CATTCACC....................	21	1	6.00	0.00	5.00	1.00	0.00
...............GTAAGTGACTATGCCGGGATTGT......................................................................	23	1	4.00	0.00	2.00	1.00	1.00
...............GTAAGTGACTATGCCGGGATTG.......................................................................	22	1	4.00	0.00	2.00	0.00	2.00
................TAAGTGACTATGCCGGGATTGT......................................................................	22	1	3.00	0.00	1.00	2.00	0.00
...............GTAAGTGACTATGCCGGGATTGTG.....................................................................	24	1	3.00	1.00	1.00	0.00	1.00
...............GTAAGTGACTATGCCGGGATTGTGGTT..................................................................	27	1	3.00	0.00	0.00	2.00	1.00
...............................................................ACT--CACGGCATTT--CATTCACG....................	21	1	2.00	0.00	2.00	0.00	0.00
...............GTAAGTGACTATGCCGGGATTGTGT....................................................................	25	1	2.00	0.00	0.00	0.00	2.00
........................................TTAT---TATACTTAGCGTCTCC.............................................	20	1	2.00	0.00	2.00	0.00	0.00
.................................................................T--CACGGCATTT--CATTCACTTGC.................	22	1	2.00	0.00	2.00	0.00	0.00
...............................................................ACT--CACGGCATTT--CATTC.......................	18	1	2.00	0.00	1.00	0.00	1.00
...............................................................ACT--CACGGCATTT--CATTCACTTGT.................	24	1	2.00	0.00	0.00	1.00	1.00
...............................................................ACT--CACGGCATTT--CATTCACTTGCGG...............	26	1	2.00	0.00	1.00	1.00	0.00
...............................................................ACT--CACGACATTT--CATTCACTTG..................	23	1	2.00	0.00	2.00	0.00	0.00
....................................................................TACGGCATTT--CATTCACTTG..................	20	1	2.00	0.00	2.00	0.00	0.00
................................................................CT--CACGGCATTT--CATTCACTTG..................	22	1	2.00	0.00	2.00	0.00	0.00
...............................................................ACT--CACGGCATTT--CATTCACTTGA.................	24	1	2.00	0.00	0.00	2.00	0.00
...............................................................GCT--CACGGCATTT--CATTCACTTGCAG...............	26	1	1.00	0.00	0.00	1.00	0.00
...............GTGAGTGACTATGCCGGGATTGTGG....................................................................	25	1	1.00	0.00	0.00	0.00	1.00
...............GTAAGTGACTATGCCGGGATTGG......................................................................	23	1	1.00	0.00	1.00	0.00	0.00
...............................................................ACT--CACGGCATTT--CATTCACTTGCAGG..............	27	1	1.00	0.00	0.00	1.00	0.00
...............................................................ACT--CACGGCATTT--CATTCACTTAA.................	24	1	1.00	0.00	1.00	0.00	0.00
...............GTAAGTGACTATGCCGGGATTTTGG....................................................................	25	1	1.00	0.00	0.00	0.00	1.00
...............................................................ACT--CACGTCATTT--CATTCACTTG..................	23	1	1.00	0.00	1.00	0.00	0.00
................................................................CT--CACGGCATTT--CATTCACTTGCAGT..............	26	1	1.00	0.00	0.00	0.00	1.00
.................................................................T--CACGGCATTT--CATTCACTTGCAGT..............	25	1	1.00	1.00	0.00	0.00	0.00
...............................................................ACT--GACGGCATTT--CATTCACTTG..................	23	1	1.00	0.00	1.00	0.00	0.00
...............................................................ACT--CACGGGATTT--CATTCACTTG..................	23	1	1.00	0.00	1.00	0.00	0.00
...............................................................ACT--CACGGCATTT--CATTCCCTTGCAGT..............	27	1	1.00	1.00	0.00	0.00	0.00
...............................................................ACT--CATGGCATTT--CATTCACTT...................	22	1	1.00	0.00	1.00	0.00	0.00
....................................................................CACGGCATTT--CATTCACTTGCAG...............	23	1	1.00	0.00	1.00	0.00	0.00
........................TATGCCGGGATTGTGGTTAT---T............................................................	21	1	1.00	1.00	0.00	0.00	0.00
...............GTAAGTGACTATGCCGGGG..........................................................................	19	1	1.00	0.00	0.00	1.00	0.00
...............................................................ACT--CACGGCATTT--CATTCACTTGCAC...............	26	1	1.00	0.00	1.00	0.00	0.00
...............GTAAGTGACTATGCCGGGATTGTGGT...................................................................	26	1	1.00	0.00	0.00	0.00	1.00
...............GTAAGTGACTATGCCGGGAA.........................................................................	20	1	1.00	0.00	0.00	0.00	1.00
................................................................CT--CACGGCATTT--CATTCACTTGCT................	24	1	1.00	0.00	1.00	0.00	0.00
.................AAGTGACTATGCCGGGAT.........................................................................	18	1	1.00	0.00	0.00	1.00	0.00
.................................................................T--CACGGCATTT--CATTCAC.....................	18	1	1.00	0.00	1.00	0.00	0.00
...............GTAAGTGACTATGCCGGGATTGTGGAA..................................................................	27	1	1.00	0.00	0.00	0.00	1.00
...............GTAAGTGACTATGCCGGGATTT.......................................................................	22	1	1.00	0.00	0.00	1.00	0.00
...............................................................ACT--CACGGCATTT--CATTCACTTGCCG...............	26	1	1.00	1.00	0.00	0.00	0.00
...............................................................ACT--CACGGAATTT--CATTCACTTG..................	23	1	1.00	0.00	1.00	0.00	0.00
........................................TTAT---TATACTTAGCGTCTCCACT--........................................	23	1	1.00	0.00	1.00	0.00	0.00
...............................................................ACT--CGCGGCATTT--CATTCACTTGCAG...............	26	1	1.00	1.00	0.00	0.00	0.00
................TAAGTGACTATGCCGGGATTG.......................................................................	21	1	1.00	0.00	1.00	0.00	0.00
...............GTAAGTGACTATGCCGGGATG........................................................................	21	1	1.00	0.00	0.00	1.00	0.00
...............................................................ACT--CACGGCATTT--CTTTCACC....................	21	1	1.00	0.00	1.00	0.00	0.00
...............GTAAGTGACTATGCCGGCATTGTGG....................................................................	25	1	1.00	0.00	0.00	0.00	1.00
.................................................................T--CACGGCATTT--CATTCACTTG..................	21	1	1.00	0.00	1.00	0.00	0.00
...................................................CTTAGCGTCTCCACT--CACGGC..................................	21	1	1.00	0.00	0.00	1.00	0.00

droSec1

ACGTACATCACCAAGGTAAGTGACTATGCCGGGATTGTGGTTAT---TATACTTAGAGTCTCCACT--CACGGCATTT--CATTCACTTGCAGTACATCACCGCCGAG	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
...............................................................ACT--CACGGCATTT--CATTCACTTGCAGT..............	27	1	53.00	5.00	30.00	18.00
...............................................................ACT--CACGGCATTT--CATTCACTT...................	22	1	50.00	0.00	3.00	47.00
...............................................................ACT--CACGGCATTT--CATTCACT....................	21	1	47.00	1.00	0.00	46.00
.................................................................T--CACGGCATTT--CATTCACTTGCAGT..............	25	1	21.00	1.00	15.00	5.00
...............................................................ACT--CACGGCATTT--CATTCACTTGCAG...............	26	1	14.00	1.00	5.00	8.00
...............GTAAGTGACTATGCCGGGATTGTGG....................................................................	25	1	11.00	0.00	8.00	3.00
...............GTAAGTGACTATGCCGGGATTGT......................................................................	23	1	6.00	3.00	1.00	2.00
...............................................................ACT--CACGGCATTT--CATTCACTTGCA................	25	1	4.00	2.00	1.00	1.00
.................AAGTGACTATGCCGGGATTGTGGTT..................................................................	25	1	4.00	3.00	0.00	1.00
................TAAGTGACTATGCCGGGATTG.......................................................................	21	1	4.00	2.00	2.00	0.00
...............GTAAGTGACTATGCCGGGAT.........................................................................	20	1	3.00	1.00	1.00	1.00
...............GTAAGTGACTATGCCGGGATTG.......................................................................	22	1	3.00	2.00	0.00	1.00
................TAAGTGACTATGCCGGGATTGT......................................................................	22	1	3.00	1.00	1.00	1.00
..........................................................................ATTT--CATTCACTTGCAGT..............	18	1	2.00	0.00	2.00	0.00
.....................GACTATGCCGGGATTGTGGTT..................................................................	21	1	2.00	2.00	0.00	0.00
.....................GACTATGCCGGGATTGTGGTTAT---T............................................................	24	1	2.00	0.00	2.00	0.00
.................................................................T--CACGGCATTT--CATTCACTTGC.................	22	1	2.00	0.00	0.00	2.00
................................................................CT--CACGGCATTT--CATTCACTTGCAGT..............	26	1	2.00	0.00	2.00	0.00
.....................GACTATGCCGGGATTGTGGTTA.................................................................	22	1	2.00	0.00	2.00	0.00
.................................................................T--CACGGCATTT--CATTCACTTGCAGA..............	25	1	2.00	0.00	2.00	0.00
...............GTAAGTGACTATGCCGGGATTGTG.....................................................................	24	1	2.00	0.00	2.00	0.00
...............GTAAGTGACTATGCCGGGATTGTGGTT..................................................................	27	1	2.00	1.00	1.00	0.00
.................................................................T--CACGGCATTT--CATTCACTTGCAG...............	24	1	2.00	0.00	0.00	2.00
...............GTAAGTGACTATGCCGGGATT........................................................................	21	1	2.00	2.00	0.00	0.00
.................................................................T--CACGGCATTT--CATTCACTTG..................	21	1	2.00	0.00	0.00	2.00
.................................................................T--CACGGTATTT--CATTCACTTGCAG...............	24	1	1.00	0.00	1.00	0.00
...............GTAAGTGACTATGCCGGG...........................................................................	18	1	1.00	0.00	0.00	1.00
.....................GACTATGCCGGGATTGTGGTTAT---.............................................................	23	1	1.00	1.00	0.00	0.00
.......................CTATGCCGGGATTGTGGTTAT---TA...........................................................	23	1	1.00	1.00	0.00	0.00
...................GTGACTATGCCGGGATTGTGGTTA.................................................................	24	1	1.00	1.00	0.00	0.00
.................AAGTGACTATGCCGGGATTGTGT....................................................................	23	1	1.00	0.00	0.00	1.00
...............................................TATACTTAGAGTCTCCACT--CACGGCA.................................	26	1	1.00	0.00	1.00	0.00
...............TTAAGTGACTATGCCGGGATT........................................................................	21	1	1.00	1.00	0.00	0.00
...............................................................ACT--CACGGCATTT--CATTCACTTGCAT...............	26	1	1.00	0.00	1.00	0.00
.................................................................T--CACGGCATTT--CATTCACTTGCA................	23	1	1.00	0.00	0.00	1.00
...............................................................ACT--CTCGGCATTT--CATTCACTTGCA................	25	1	1.00	0.00	0.00	1.00
........................TAAGCCGGGATTGTGGGT..................................................................	18	1	1.00	0.00	1.00	0.00
.......................CTATGCCGGGATTGTGGTTAT---T............................................................	22	1	1.00	1.00	0.00	0.00
.................AAGTGACTATGCCGGGATTG.......................................................................	20	1	1.00	1.00	0.00	0.00
...............................................................ACT--CACGGCATTT--CATTCACTTGCAGA..............	27	1	1.00	0.00	1.00	0.00
................................................................CT--CACGGCATTT--CATTCACTTGCA................	24	1	1.00	0.00	0.00	1.00
................................................................CT--CACGGCATTT--CATTCACTTGT.................	23	1	1.00	0.00	0.00	1.00
...................GTGACTATGCCGGGATTGTGGTT..................................................................	23	1	1.00	1.00	0.00	0.00
.........................................................................CATTT--CATTCACTTGCAGTT.............	20	1	1.00	1.00	0.00	0.00
......................................................AGAGTCTCCACA--AACGGC..................................	18	1	1.00	0.00	1.00	0.00
...............................................................ACT--CACGTCATTT--CATTCACTTGCAGT..............	27	1	1.00	0.00	1.00	0.00
...................GTGACTATGCCGGGATGCTG.....................................................................	20	1	1.00	1.00	0.00	0.00
...............GTAAGTGACTATGCCGGGATTGTGGT...................................................................	26	1	1.00	1.00	0.00	0.00
...............................................................ACT--CACGGCATTT--CATTCACTTA..................	23	1	1.00	0.00	0.00	1.00
...............................................................ACT--CACGGCATTT--CATTCACTTGC.................	24	1	1.00	0.00	0.00	1.00
...........................................................CTCCACT--CACGGCATTT--CATTCACTT...................	26	1	1.00	0.00	1.00	0.00
.................................................................T--CACGGCATTT--CATTCACTT...................	20	1	1.00	0.00	0.00	1.00
..........................................AT---TATACTTAGAGTCTCCACT--CACGGCA.................................	28	1	1.00	0.00	0.00	1.00
................................................ATACTTAGAGTCTCCACT--CACGGCA.................................	25	1	1.00	1.00	0.00	0.00
...............................................................ACT--CACGGCATTT--CATTCA......................	19	1	1.00	0.00	1.00	0.00
..........................................AT---TATACTTAGAGTCTCCACT--........................................	21	1	1.00	0.00	1.00	0.00
................................................................CT--CACGGCATTT--CATTCACTTGCAG...............	25	1	1.00	0.00	0.00	1.00
...............................................................ACT--CACGGCATTT--CATTCACTTG..................	23	1	1.00	0.00	0.00	1.00
.....................................................TAGAGTCTCCACT--CACGGCATTT--CATT........................	27	1	1.00	1.00	0.00	0.00
...............................................................ACT--CACTGCATTT--CATTCACTTGCA................	25	1	1.00	0.00	1.00	0.00
...............................................................ACT--CACGGCATTT--CATTCAC.....................	20	1	1.00	0.00	0.00	1.00

droYak2

ACGTACATCACCAAGGTAAGTGACAATGCCGGGATTGTGGTTAT---TGAAAATACCTTCTCCACT--CACGGCATTA--TATTCACTTGCAGTACATCACCGCCGAG	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
...............................................................ACT--CACGGCATTA--TATTCACTTG..................	23	1	162.00	0.00	0.00	0.00	1.00	161.00
...............................................................ACT--CACGGCATTA--TATTCACTTGCA................	25	1	33.00	0.00	0.00	1.00	0.00	32.00
...............................................................ACT--CACGGCATTA--TATTCACTTGC.................	24	1	29.00	0.00	0.00	0.00	0.00	29.00
...............................................................ACT--CACGGCATTA--TATTCACTT...................	22	1	20.00	0.00	3.00	0.00	4.00	13.00
...............................................................ACT--CACGGCATTA--TATTCACT....................	21	1	19.00	0.00	0.00	0.00	3.00	16.00
...............................................................ACT--CACGGCATTA--TATTCACTTGCAG...............	26	1	18.00	1.00	2.00	0.00	3.00	12.00
...............GTAAGTGACAATGCCGGGATTGT......................................................................	23	1	9.00	0.00	0.00	7.00	0.00	2.00
...............................................................ACT--CACGGCATTA--TATTCACTTGCAGT..............	27	1	8.00	3.00	2.00	0.00	1.00	2.00
...............GTAAGTGACAATGCCGGGATTGTGG....................................................................	25	1	8.00	0.00	0.00	1.00	0.00	7.00
......................ATAATGCCGGGGTTGTG.....................................................................	17	1	6.00	0.00	0.00	0.00	6.00	0.00
...............GTAAGTGACAATGCCGGGATTGTGGTT..................................................................	27	1	6.00	0.00	0.00	2.00	0.00	4.00
...............GTAAGTGACAATGCCGGGATTGTGGT...................................................................	26	1	5.00	0.00	0.00	3.00	0.00	2.00
.................AAGTGAGAATGCCGGTAT.........................................................................	18	1	3.00	0.00	1.00	1.00	1.00	0.00
...............GTAAGTGACAATGCCGGGATTGTGGTTAT---.............................................................	29	1	3.00	0.00	0.00	0.00	0.00	3.00
...............GTAAGTGACAATGCCGGGATTG.......................................................................	22	1	3.00	1.00	0.00	2.00	0.00	0.00
.....................GACAATGCCGGGATTGTGGTT..................................................................	21	1	2.00	0.00	0.00	2.00	0.00	0.00
...............GTAAGTGACAATGCCGGGATTTGG.....................................................................	24	1	2.00	0.00	0.00	0.00	0.00	2.00
...............................................................ACT--CACGGCATTA--TATTCACTTGCG................	25	1	2.00	0.00	0.00	0.00	0.00	2.00
.................AAGTGACAATGCCGGGATTGTGGTTAT---TG...........................................................	29	1	2.00	0.00	0.00	2.00	0.00	0.00
...............................................................ACT--CACGGCATTA--TATTCACC....................	21	1	2.00	0.00	0.00	0.00	0.00	2.00
...............GTAAGTGACAATGCCGGGATTGTG.....................................................................	24	1	2.00	0.00	0.00	2.00	0.00	0.00
.......................CAATGCCGGGATTGTGGTT..................................................................	19	1	2.00	0.00	0.00	2.00	0.00	0.00
...............................................................ACG--CACGGCATTA--TATTCACTTGCAG...............	26	1	1.00	0.00	1.00	0.00	0.00	0.00
...............................................................ACT--CACGGCATTA--TATTCACTTGCT................	25	1	1.00	0.00	0.00	0.00	0.00	1.00
...............................................................ACT--CCCGGCATTT--TATTCACTT...................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
...............GTAAGTGACAATGCCGGGAT.........................................................................	20	1	1.00	0.00	0.00	0.00	0.00	1.00
...............GTAAGTGACAATGCCGGGA..........................................................................	19	1	1.00	0.00	0.00	1.00	0.00	0.00
...............GTAAGTGACAATGCCGGGATTGG......................................................................	23	1	1.00	0.00	0.00	0.00	0.00	1.00
...............................................................ACT--CACGACATTA--TATTCACTTGCAGT..............	27	1	1.00	0.00	0.00	0.00	1.00	0.00
..................AGTGACAATGCCGGGATTGT......................................................................	20	1	1.00	0.00	0.00	1.00	0.00	0.00
.................................................................T--CACGGCATTA--TATTCACTTGCAGT..............	25	1	1.00	0.00	0.00	0.00	1.00	0.00
...............................................................AAT--CACGGCATTA--TATTCACT....................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
...............................................................ACT--CACGGCATTA--TGTTCACTTGCAGT..............	27	1	1.00	0.00	0.00	0.00	1.00	0.00
........................AATGCCGGGATTGTGGTTA.................................................................	19	1	1.00	0.00	0.00	1.00	0.00	0.00
...............................................................ACT--CACGGTATTA--TATTCACTTG..................	23	1	1.00	0.00	0.00	0.00	0.00	1.00
....................................................................CACGGCATTA--TATTCACTTTCAGT..............	24	1	1.00	0.00	1.00	0.00	0.00	0.00
....................................................................CACGGCATTA--TATTCACTTGCA................	22	1	1.00	0.00	0.00	0.00	0.00	1.00
...............................................................ACT--CACGGCATTA--TATTCACTTTCA................	25	1	1.00	0.00	1.00	0.00	0.00	0.00
...............................................................ACT--CACGGCATTA--TATTCACTTGG.................	24	1	1.00	0.00	0.00	0.00	0.00	1.00
...............................................................ACT--CACGGCATTA--TATTCACTTGCCG...............	26	1	1.00	0.00	0.00	0.00	1.00	0.00
...............................................................ACT--CACGGCATTA--TATCCACTTGCAGT..............	27	1	1.00	0.00	1.00	0.00	0.00	0.00
........................AATGCGGGGATCGTGG....................................................................	16	1	1.00	0.00	0.00	0.00	1.00	0.00
...............................................................ACT--CACGCCATTA--TATTCACT....................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
...............................................................ACT--CACGGCATTA--TATTCCCTGG..................	23	1	1.00	0.00	0.00	0.00	0.00	1.00
...............................................................ACT--CACGGCATTA--TATTCACTTACAGT..............	27	1	1.00	0.00	1.00	0.00	0.00	0.00
.........................ATGCCGGGATTGTGGTTAT---T............................................................	20	1	1.00	0.00	0.00	1.00	0.00	0.00
.................AAGTGACAATGCCGGGATTG.......................................................................	20	1	1.00	0.00	0.00	1.00	0.00	0.00
....................................................................CACGGCATTA--TATTCACTTGCAGT..............	24	1	1.00	0.00	0.00	0.00	1.00	0.00
.......................TAATGCCGGGGTTGTG.....................................................................	16	1	1.00	0.00	0.00	0.00	1.00	0.00
.................AAGTGACCATGCCGGGATTGTGG....................................................................	23	1	1.00	0.00	0.00	1.00	0.00	0.00
..................AGTGACAATGCCGGGCTTGTGGTTA.................................................................	25	1	1.00	0.00	0.00	1.00	0.00	0.00
.................AAGTGACAATGCCGGGATTGTGGT...................................................................	24	1	1.00	0.00	0.00	1.00	0.00	0.00
.........................................................................CATTA--TATTCACTTGCAGTT.............	20	1	1.00	0.00	0.00	1.00	0.00	0.00
...............................................................ACT--TACGGCATTA--TATTCACTTGC.................	24	1	1.00	0.00	0.00	0.00	0.00	1.00
...............................................................ACT--CACGGCATTA--TxTTCACT....................	20	1	1.00	0.00	0.00	0.00	0.00	1.00
.................AAGTGACAATGCCGGGATTGT......................................................................	21	1	1.00	0.00	0.00	1.00	0.00	0.00
.......................CAATGCCGGGATTGTGGTTAT---TG...........................................................	23	1	1.00	0.00	0.00	1.00	0.00	0.00
.....................GACAAGGCCGGGAATGTGG....................................................................	19	1	1.00	0.00	0.00	1.00	0.00	0.00
...............GTAAGTGACAATTCCGGGATTGTGG....................................................................	25	1	1.00	0.00	0.00	0.00	0.00	1.00
..................AGTGACAATGCCGGGATTG.......................................................................	19	1	1.00	0.00	0.00	1.00	0.00	0.00
.....................GACAAGGCCGGGAATGTGGT...................................................................	20	1	1.00	0.00	0.00	1.00	0.00	0.00
................................................................CT--CACGGCATTA--TATTCACTTGCAG...............	25	1	1.00	0.00	1.00	0.00	0.00	0.00
....................................................................CACGGCATTA--TATTCACTTGC.................	21	1	1.00	0.00	0.00	0.00	0.00	1.00
................................................................CT--CCCGGCATTA--TATTCACGTGCAG...............	25	1	1.00	0.00	0.00	0.00	1.00	0.00
....................TTACAATGCCGGTATTGTG.....................................................................	19	1	1.00	0.00	0.00	0.00	1.00	0.00
...............................................................ACT--CACGGCATTA--TATTCACTTGCAGTT.............	28	1	1.00	0.00	0.00	1.00	0.00	0.00
...............................................................ACT--CACGGCATTA--TATTCACTGG..................	23	1	1.00	0.00	0.00	0.00	0.00	1.00
.................AAGTGACAATGCCGGGATTGTG.....................................................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
...............................................................ACT--CACGCCATTA--TATTCACTTT..................	23	1	1.00	0.00	0.00	0.00	1.00	0.00
.....................GACAATGCCGGGATTGTGGTTAT---.............................................................	23	1	1.00	0.00	0.00	1.00	0.00	0.00

droEre2

ACGTACATCACCAAGGTAAGTGACAGTGCCGGGATTGTGGTTAT---TAAAAATACCTTCTCCACT--CACGGCATTT--CATTCACTTGCAGTACATCACCGCCGAG	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
...............................................................ACT--CACGGCATTT--CATTCACT....................	21	1	113.00	0.00	1.00	0.00	112.00
...............................................................ACT--CACGGCATTT--CATTCACTT...................	22	1	109.00	0.00	3.00	0.00	106.00
...............................................................ACT--CACGGCATTT--CATTCACTTGCAG...............	26	1	25.00	1.00	0.00	0.00	24.00
...............................................................ACT--CACGGCATTT--CATTCACTTGCAGT..............	27	1	18.00	1.00	0.00	0.00	17.00
...............GTAAGTGACAGTGCCGGGATTGTGG....................................................................	25	1	17.00	0.00	0.00	0.00	17.00
...............................................................ACT--CACGGCATTT--CATTCACTTGCA................	25	1	14.00	0.00	3.00	0.00	11.00
................TAAGTGACAGTGCCGGGATTGT......................................................................	22	1	5.00	0.00	0.00	0.00	5.00
...............GTAAGTGACAGTGCCGGGA..........................................................................	19	1	4.00	0.00	0.00	0.00	4.00
...............................................................ACT--CACGGCACTT--CATTCACTT...................	22	1	3.00	0.00	0.00	0.00	3.00
...............GTAAGTGACAGTGCCGGGATT........................................................................	21	1	3.00	0.00	0.00	0.00	3.00
................TAAGTGACAGTGCCGGGATTGTGG....................................................................	24	1	3.00	0.00	0.00	0.00	3.00
...............GTAAGTGACAGTGCCGGGAT.........................................................................	20	1	3.00	0.00	0.00	0.00	3.00
...............................................................ACT--CACGGCATTT--CATTCACTTGC.................	24	1	3.00	0.00	2.00	0.00	1.00
...............................................................AAT--CACGGCATTT--CATTCACT....................	21	1	3.00	0.00	0.00	0.00	3.00
..........................................................................ATTT--CATTCACTTGCAGT..............	18	1	2.00	0.00	0.00	0.00	2.00
................................................................CT--CACGGCATTT--CATTCACT....................	20	1	2.00	0.00	0.00	0.00	2.00
...............................................................ACT--CATGGCATTT--CATTCACT....................	21	1	2.00	0.00	0.00	0.00	2.00
...............................................................ACT--CACGGCATTT--CATTCACTTACA................	25	1	2.00	0.00	0.00	0.00	2.00
...............GTAAGTGACAGTGCCGGGATTG.......................................................................	22	1	2.00	0.00	0.00	0.00	2.00
...............................................................ACT--CACGGCATTT--CATTCACTTGCAGA..............	27	1	2.00	0.00	0.00	0.00	2.00
...............................................................ACT--CATGGCATTT--CATTCACTT...................	22	1	2.00	0.00	0.00	0.00	2.00
...............................................................ACT--CACGGCATTT--CCTTCACTT...................	22	1	2.00	0.00	1.00	0.00	1.00
...............GTAAGTGACAGTGCCGGGATTGT......................................................................	23	1	2.00	0.00	0.00	0.00	2.00
...............GTAAGTGACAGTGCCGGGATTGTG.....................................................................	24	1	2.00	0.00	0.00	0.00	2.00
...............................................................ACT--CACGGCATTT--CATTCACTTG..................	23	1	2.00	0.00	0.00	0.00	2.00
...............................................................ACT--CACTGCATTT--CATTCACTT...................	22	1	2.00	0.00	0.00	0.00	2.00
...............................................................ACT--CACGGCATTT--CATTCAC.....................	20	1	2.00	0.00	1.00	0.00	1.00
...............GTAAGTGACAGTGCCGGAATTGTGG....................................................................	25	1	1.00	0.00	0.00	0.00	1.00
...............GTAAGTGACAGTGCCTGGATTGTGG....................................................................	25	1	1.00	0.00	0.00	0.00	1.00
....................................................................CACGGCATTT--CATTCACTTGCA................	22	1	1.00	0.00	0.00	0.00	1.00
................TAAGTGACAGTGCCGGGATTGTG.....................................................................	23	1	1.00	0.00	0.00	0.00	1.00
...............................................................ACT--CACGGCATCT--CATTCACTT...................	22	1	1.00	0.00	0.00	0.00	1.00
...............................................................ACT--CACGGCATTT--CATTCACTTGCAT...............	26	1	1.00	0.00	0.00	0.00	1.00
...............................................................ACT--CGCGGCATTT--CATTCACT....................	21	1	1.00	0.00	0.00	0.00	1.00
...............................................................ACT--CACGGCATTT--CATTAACT....................	21	1	1.00	0.00	0.00	0.00	1.00
...............................................................ACT--CACGTCATTT--CATTCACTTGCA................	25	1	1.00	0.00	0.00	0.00	1.00
...............................................................ACT--AACGGCATTT--CATTCACT....................	21	1	1.00	0.00	0.00	0.00	1.00
...............................................................AAT--CACGGAATTT--CATTCACT....................	21	1	1.00	0.00	0.00	0.00	1.00
........................AGTGCCGGGATTGTGGTT..................................................................	18	1	1.00	0.00	0.00	0.00	1.00
...............................................................ACT--CACGGAATTT--CATTCCCTT...................	22	1	1.00	0.00	0.00	0.00	1.00
...............................................................ACT--CACGGCATTT--CATTCACTTACAG...............	26	1	1.00	0.00	0.00	0.00	1.00
...............GTAAGTGACAGTGCCGGGATTGAGG....................................................................	25	1	1.00	0.00	0.00	0.00	1.00
...............................................................ACT--CACGGAATTT--CATTAACT....................	21	1	1.00	0.00	0.00	0.00	1.00
...............................................................ACT--AAAGGCATTT--CATTCACTTGCA................	25	1	1.00	0.00	0.00	0.00	1.00
...............................................................ACT--CACGGCATTT--CATTCACTTGTA................	25	1	1.00	0.00	0.00	0.00	1.00
................................................................CT--CACGGCATTT--CATTCACTTGCAGT..............	26	1	1.00	0.00	1.00	0.00	0.00
...............................................................ACT--CACGGCATTT--CATTCACTTGT.................	24	1	1.00	0.00	0.00	0.00	1.00
...............................................................ACT--CACGGCATTT--CCTTCACTTGA.................	24	1	1.00	0.00	0.00	0.00	1.00
...............................................................ACT--CACGGCATTT--CATTAACTT...................	22	1	1.00	0.00	0.00	0.00	1.00
...............................................................ACT--CACGACATTT--CATTCACT....................	21	1	1.00	0.00	0.00	0.00	1.00
...................GTGACAGTGCCGGGATTGTGGTTAT---.............................................................	25	1	1.00	0.00	0.00	0.00	1.00
...............................................................ATT--AACGGCATTT--CATTCACT....................	21	1	1.00	0.00	0.00	0.00	1.00
...............................................................ACT--CACGGCATCT--CATTCACTTGCAG...............	26	1	1.00	0.00	0.00	0.00	1.00
.....................GACAGTGCCGGGATTGTGGTTAT---T............................................................	24	1	1.00	0.00	0.00	0.00	1.00
....................................................................CACGGCATTT--CATTCACTTGCAG...............	23	1	1.00	0.00	0.00	0.00	1.00
...............................................................ACT--AACGGCATTT--CATTCACTTGCAG...............	26	1	1.00	0.00	0.00	0.00	1.00
...............................................................ACT--CACGTCATTT--CATTCACTTGCAGT..............	27	1	1.00	0.00	0.00	0.00	1.00
...............................................................ACT--CACTGCATTT--CATTCA......................	19	1	1.00	0.00	0.00	0.00	1.00
...............GTAAGTGACAGTGCCGGGATTGGGG....................................................................	25	1	1.00	0.00	0.00	0.00	1.00
....................................................................CACGGCATTT--CATTCACTTGCAGT..............	24	1	1.00	0.00	0.00	0.00	1.00
...............................................................ACT--CACGGCATTT--AATTCACT....................	21	1	1.00	0.00	0.00	0.00	1.00
...............GTACGTGACAGTGCCGGGATTGTGG....................................................................	25	1	1.00	0.00	0.00	0.00	1.00
.....................GACAGTGCCGGGATTGTGGT...................................................................	20	1	1.00	1.00	0.00	0.00	0.00
...............TTAAGTGACAGTGCCGGGATTGTGG....................................................................	25	1	1.00	0.00	0.00	0.00	1.00
...............................................................ACT--CACTGCATTT--CATTCACTTGCAGT..............	27	1	1.00	0.00	0.00	0.00	1.00
...............................................................ACT--CACGGCATTT--CATTCAAT....................	21	1	1.00	0.00	0.00	0.00	1.00
...............................................................ACT--CACGTCATTT--CATTCACTTGC.................	24	1	1.00	0.00	0.00	0.00	1.00
...............GTAAGTGACAGTGCCGGG...........................................................................	18	1	1.00	0.00	0.00	0.00	1.00
...............................................................ACT--CACGGCATTT--CATTCA......................	19	1	1.00	0.00	1.00	0.00	0.00
...............................................................ACT--AACGTCATTT--CATTCACT....................	21	1	1.00	0.00	0.00	0.00	1.00
...............................................................ACT--CACGGCATTT--CCTTCCCT....................	21	1	1.00	0.00	1.00	0.00	0.00
....................TGACAGTGCCGGGATTGT......................................................................	18	1	1.00	0.00	0.00	0.00	1.00
...............................................................ACT--CACGTCATTT--CATTCACTTGCAG...............	26	1	1.00	0.00	0.00	0.00	1.00
...............................................................ACT--CACGACATTT--CATTCACTTGCAG...............	26	1	1.00	0.00	0.00	0.00	1.00
................................................................TT--CACGGCATTT--CATTCACTT...................	21	1	1.00	0.00	0.00	0.00	1.00
...............................................................ACT--CACTGCATTT--CATTCACTTGCA................	25	1	1.00	0.00	0.00	0.00	1.00

droAna3

ACTTATATTACAAAGGTAAGTAT------------------------------------------C--CAAGTTATTTC-CTTCAATTTTCAGTTCATAACCGCCGAA

Size

Hit Count

Total Norm

V105
Male body

V106
Head

V055
Unknown

V039
Embryo

dp4

ACGTACATCACAAAGGTAAGTGGCTATGCCGCGACGG----GAT---TGAACCTCTCATCTCTTCT--CACGGCATAT--CAATCACTTGCAGTACATCACCGCCGAG	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
...............................................................TCT--CACGGCATAT--CAATCACTTGCA................	25	1	52.00	4.00	28.00	19.00	1.00
...............................................................TCT--CACGGCATAT--CAATCACTTGCAG...............	26	1	41.00	9.00	19.00	12.00	1.00
...............................................................TCT--CACGGCATAT--CAATCACTT...................	22	1	26.00	4.00	1.00	20.00	1.00
...............................................................TCT--CACGGCATAT--CAATCACT....................	21	1	19.00	5.00	1.00	12.00	1.00
...............................................................TCT--CACGGCATAT--CAATCACTTGC.................	24	1	14.00	2.00	4.00	7.00	1.00
...............................................................TCT--CACGGCATAT--CAATCACTTGCAGT..............	27	1	14.00	9.00	1.00	4.00	0.00
...............................................................TCT--CACGGCATAT--CAATCACTTG..................	23	1	7.00	1.00	1.00	4.00	1.00
...............GTAAGTGGCTATGCCGCGACGG----GT.................................................................	24	1	5.00	3.00	2.00	0.00	0.00
...............GTAAGTGGCTATGCCGCGACGG----GG.................................................................	24	1	3.00	0.00	3.00	0.00	0.00
...............................................................TCT--CACGGCATAT--CAATCACTTGCAA...............	26	1	2.00	0.00	1.00	1.00	0.00
...............................................................TCT--CACGGCATAT--CGATCACTTGC.................	24	1	2.00	0.00	1.00	1.00	0.00
...............GTAAGTGGCTATGCCGCGACGG----G..................................................................	23	1	2.00	0.00	1.00	1.00	0.00
.................................................................T--CACGGCATAT--CAATCACTTGCA................	23	1	2.00	0.00	2.00	0.00	0.00
...............................................................TCT--CACGGCATAT--CAATCACTTGCAC...............	26	1	1.00	0.00	0.00	1.00	0.00
...............................................................TCT--CACGGCATAT--CACTCACTTGCAG...............	26	1	1.00	0.00	1.00	0.00	0.00
.................AAGTGGCTATGCCGCGACGG----GA.................................................................	22	1	1.00	0.00	1.00	0.00	0.00
...............................................................TCT--CACGGCATAC--CAATCACTT...................	22	1	1.00	0.00	0.00	1.00	0.00
...............................................................TCT--CACGGCATAT--CAATCACTTGT.................	24	1	1.00	0.00	0.00	1.00	0.00
...............................................................TCT--CACGGCATAT--CTATCACTTGCAG...............	26	1	1.00	0.00	1.00	0.00	0.00
...............................................................TCT--CACGGCATAT--CCATCACTTG..................	23	1	1.00	0.00	0.00	1.00	0.00
...............................................................TCT--CACGGAATAT--CAATCACTTGCAG...............	26	1	1.00	0.00	1.00	0.00	0.00
................................................GAACAGCTCATCTCTTCT--........................................	18	1	1.00	0.00	1.00	0.00	0.00
...............GTAAGTGGCTATGCCGCCACCG----G..................................................................	23	1	1.00	0.00	1.00	0.00	0.00
.................AAGTGGCTATGCCGCGGCGG----GG.................................................................	22	1	1.00	0.00	1.00	0.00	0.00
......................................................................CGGCATAT--CAATCACTTGC.................	19	1	1.00	0.00	0.00	0.00	1.00
...............................................................TCA--CACGGCATAT--CAATCACTTGCAG...............	26	1	1.00	0.00	0.00	1.00	0.00
...............................................................TCT--CACGGCATCT--CAATCACTTGCCG...............	26	1	1.00	0.00	1.00	0.00	0.00
...............................................................TCT--CACGGCATAT--CAATCACTTGCAGTT.............	28	1	1.00	1.00	0.00	0.00	0.00
...............................................................TCT--CACGGCATAT--CGATCACTTGCAG...............	26	1	1.00	0.00	0.00	1.00	0.00
...............................................................TCG--GACGGCATAT--CAATCACTT...................	22	1	1.00	0.00	0.00	1.00	0.00
.....................................................................ACGGCATAT--CAATCACTTGCAG...............	22	1	1.00	0.00	1.00	0.00	0.00
...............................................................TCT--CACGGCATAT--CAATCCCTT...................	22	1	1.00	0.00	0.00	1.00	0.00
...............................................................TCT--CACGGCATAT--CCATCACTTGCA................	25	1	1.00	0.00	1.00	0.00	0.00
...............................................................TCT--CACGGCATAT--CAATCACTTGA.................	24	1	1.00	0.00	0.00	1.00	0.00
.................AAGTGGCTATGCCGCGACGG----GT.................................................................	22	1	1.00	0.00	1.00	0.00	0.00
...............................................................CCT--CACGGCATAT--CAATCACTTGCAG...............	26	1	1.00	0.00	1.00	0.00	0.00
...............................................................TCC--CACGGCATAT--CAATCACTTGCAGT..............	27	1	1.00	0.00	0.00	1.00	0.00
...............GTAAGTGGCTATGCCGCGACGG----GAT---TG...........................................................	27	1	1.00	1.00	0.00	0.00	0.00
...............................................................TCT--AACGGCATAT--CAATCACTTGCA................	25	1	1.00	0.00	1.00	0.00	0.00
...............................................................TCC--CACGGCATAT--CAATCACTTGCA................	25	1	1.00	0.00	1.00	0.00	0.00
...............................................................TCT--CACGTCATAT--CAATCAGTT...................	22	1	1.00	0.00	0.00	1.00	0.00
...............................................................TCT--CACGGCATAT--CAATCGCTTGCA................	25	1	1.00	0.00	0.00	1.00	0.00
...............................................................TCT--CACGGCATAT--CAATCACTTGCC................	25	1	1.00	0.00	0.00	1.00	0.00
...............................................................GCT--AACGGCATAT--CAATCACT....................	21	1	1.00	0.00	0.00	1.00	0.00
...............................................................TCT--TACGGCATAT--CAATCACTTGCAG...............	26	1	1.00	1.00	0.00	0.00	0.00

droPer1

ACGTACATCACAAAGGTAAGTGGCTATGCCGCGACGG----GAT---TGAACCTCTCATCTCTTCT--CACGGCATAT--CAATCACTTGCAGTACATCACCGCCGAG	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
...............................................................TCT--CACGGCATAT--CAATCACTTGCAG...............	26	1	64.00	0.00	10.00	16.00	27.00	11.00
...............................................................TCT--CACGGCATAT--CAATCACTT...................	22	1	39.00	1.00	2.00	12.00	17.00	7.00
...............................................................TCT--CACGGCATAT--CAATCACTTGCA................	25	1	37.00	0.00	4.00	10.00	13.00	10.00
...............................................................TCT--CACGGCATAT--CAATCACTTGCAGT..............	27	1	12.00	1.00	0.00	4.00	7.00	0.00
...............................................................TCT--CACGGCATAT--CAATCACT....................	21	1	12.00	0.00	0.00	5.00	6.00	1.00
...............................................................TCT--CACGGCATAT--CAATCACTTG..................	23	1	10.00	0.00	0.00	1.00	9.00	0.00
...............GTAAGTGGCTATGCCGCGACGG----GT.................................................................	24	1	7.00	3.00	0.00	2.00	2.00	0.00
...............................................................TCT--CACGGCATAT--CAATC.......................	18	1	7.00	0.00	0.00	0.00	0.00	7.00
................TAAGTGGCTATGCCGCGACGG----GT.................................................................	23	1	5.00	2.00	0.00	1.00	2.00	0.00
...............................................................TCT--CACGGCATAT--CAATCACTTGCAGA..............	27	1	4.00	0.00	0.00	0.00	2.00	2.00
...............................................................TCT--CACGGCATAT--CAATCACTTGC.................	24	1	4.00	0.00	0.00	1.00	3.00	0.00
................................................................CT--CACGGCATAT--CAATCACTT...................	21	1	2.00	0.00	0.00	0.00	2.00	0.00
...............GTAAGTGGCTATGCCGCGACGG----G..................................................................	23	1	2.00	0.00	0.00	0.00	2.00	0.00
...............GTAAGTGGCTATGCCGCGACGG----GG.................................................................	24	1	2.00	0.00	0.00	1.00	1.00	0.00
................TAAGTGGCTATGCCGCGACGG----GA.................................................................	23	1	2.00	0.00	1.00	0.00	1.00	0.00
.................................................................T--CTCGGCATAT--CAATCACTTGCAGT..............	25	1	2.00	2.00	0.00	0.00	0.00	0.00
...............................................................TCT--CACGGCATAT--CAATCTCTT...................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
...............................................................TCT--CACGGCATAT--CAATCACTTGCAC...............	26	1	1.00	0.00	0.00	0.00	1.00	0.00
...............................................................TCT--CACAGCATAT--CAATCACTTGCAG...............	26	1	1.00	0.00	0.00	0.00	1.00	0.00
...............................................................TCG--CACGGCATAT--AAATCACTT...................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
.................................................................A--CACGGCATAT--CAATCACTTGCAGA..............	25	1	1.00	0.00	0.00	0.00	1.00	0.00
...............................................................TCT--CACGGCATAT--CACTCACTT...................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
...............................................................TCT--CACGGCATAT--CAGTCACTTGCT................	25	1	1.00	0.00	0.00	0.00	1.00	0.00
.................................................................T--CACGGCATAT--CAATCACTT...................	20	1	1.00	0.00	0.00	0.00	1.00	0.00
...............................................................TCT--CACGTCATAT--CAATCACTTGCA................	25	1	1.00	0.00	0.00	1.00	0.00	0.00
..............................................................CTCT--CACCGCATAT--CAATCACTT...................	23	1	1.00	0.00	0.00	0.00	1.00	0.00
...............................................................TCT--CACGGCATAT--CAATCACCTCCA................	25	1	1.00	0.00	0.00	0.00	1.00	0.00
...............................................................GCT--CACTGCATAT--CAATCACTTGCAG...............	26	1	1.00	0.00	0.00	0.00	1.00	0.00
...............GTAAGTGGCTATGCCCCGACGG----GT.................................................................	24	1	1.00	0.00	0.00	0.00	1.00	0.00
...............................................................TCT--CACGGCATAT--CAATCACTTGCT................	25	1	1.00	0.00	1.00	0.00	0.00	0.00
...............................................................TCT--CACGGCATAT--CAATCACTTTCAG...............	26	1	1.00	0.00	0.00	1.00	0.00	0.00
...............GTAAGTGGCTATGTCGCGACGG----GT.................................................................	24	1	1.00	0.00	0.00	0.00	1.00	0.00
...............................................................TCG--CACGGCATAT--CAAGCACT....................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
...............................................................TCT--CACGGCATAT--CATTCACTTGCAG...............	26	1	1.00	0.00	0.00	0.00	1.00	0.00
...............................................................TCG--CACGGCATAT--CAATCACTT...................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
...............................................................TCT--CACTGCATAT--CAATCACTTGCAG...............	26	1	1.00	0.00	0.00	0.00	1.00	0.00
...............................................................TCT--CACGGCATAT--CAATCACTTGCAT...............	26	1	1.00	0.00	0.00	0.00	1.00	0.00
...............................................................TAT--CACGGCATAT--CAATCACTT...................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
...............................................................TCT--CAAGGCATAT--CCATCACTT...................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
...............................................................TCT--CACGGCATAT--CATTCACTTGT.................	24	1	1.00	0.00	0.00	0.00	1.00	0.00
...............................................................TCG--CACGGCATAT--CAATCACT....................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
...............................................................TCT--CACGGCATAT--CAATCACTTGCCG...............	26	1	1.00	0.00	0.00	0.00	1.00	0.00
...............................................................TCT--CACGGAATAT--CAATCACTT...................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
...............................................................TCT--CACGGCATAT--CAATGACTT...................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
...............GTAAGTGGCTATGCCCCGACGG----G..................................................................	23	1	1.00	0.00	0.00	0.00	1.00	0.00
.................................................................T--CACGGCATAT--CAATCACTTGCAG...............	24	1	1.00	0.00	0.00	0.00	1.00	0.00
...............................................................TCT--CACGGCATAT--CAATCACTTGA.................	24	1	1.00	0.00	0.00	1.00	0.00	0.00
...............................................................CCT--CACGGCATAT--CAATCACTTGCAG...............	26	1	1.00	0.00	0.00	0.00	1.00	0.00
...............................................................TCT--CACGGCATAT--CAATCACTTCC.................	24	1	1.00	0.00	0.00	0.00	1.00	0.00
...............................................................TCT--CACGGCAGAT--CAATCACTT...................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
...............................................................TCT--CACGGCTTAT--CAATCACTTGCAG...............	26	1	1.00	0.00	0.00	0.00	1.00	0.00

droWil1

ACTTACATTACCAAGGTGAGT------------------------------------------------------TTT--GTTTTTCTTACAGTACATTACATCGGAG	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
.................GxTT------------------------------------------------------TTT--GTTCTTCTTACAG...............	19	1	1.00	0.00	1.00	0.00	0.00

droVir3

ACGTGCATTACCAAGGTAAGC--------------------------------------CTCTTCT--CACGACATCCCTTAATCCCTTGCAGTACGTTGCCAACGAA

Size

Hit Count

Total Norm

V116
Male body

V053
Unknown

V047
Embryo

M027
Male body

M028
Head

droMoj3

ACATGCATAACCAGGGTAAGTGCTCA-GCTGCTtTTtTttTttT---tgttTTTTttT---------------TtTTT--CGTCGCCTTACAGTACATCTCCAAGGAG	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
......................................TTTTTT---TGTTTTTTGTT---------------TGTT...............................	21	12	0.08	0.08	0.00	0.00	0.00
.....................................TTGTTTT---TGTTGTTTTTT---------------TTT................................	21	12	0.08	0.08	0.00	0.00	0.00
..................................TTGTTTTTGT---TGTTTTTTTTT---------------...................................	21	12	0.08	0.08	0.00	0.00	0.00
......................................TTTTTT---TTTTTTTTTTT---------------TTTTT--............................	22	51	0.02	0.02	0.00	0.00	0.00
..................................TTTTTTTTTT---TTTTTTTTTTT---------------T..................................	22	51	0.02	0.02	0.00	0.00	0.00
.....................................ATTTTTT---TTTTTTTTTTT---------------TTT................................	21	74	0.01	0.00	0.00	0.00	0.01
....................................TTTTTTTT---TTTTTTTTTTT---------------TTT................................	22	51	0.02	0.02	0.00	0.00	0.00
...................................TTTTTTTTT---TTTTTTTTTTT---------------TT.................................	22	51	0.02	0.02	0.00	0.00	0.00
.......................................TTTTT---TGTTTTTTTCT---------------TTTGT--............................	21	6	0.17	0.17	0.00	0.00	0.00
...............................................TxTTTTTTTTT---------------TTTTG--CGTTGCC.....................	22	1	1.00	0.00	0.00	1.00	0.00
...............................CCGTTTTTTTTTT---TGTTTTT......................................................	20	2	0.50	0.00	0.00	0.50	0.00
.................................TTTTTTTTTTT---TTTTTTTTTTT---------------...................................	22	51	0.02	0.02	0.00	0.00	0.00
.....................................TTTTTTT---TTTTTTTTTTT---------------TTTT...............................	22	51	0.02	0.02	0.00	0.00	0.00
.....................GTTCA-GCGGCTTTTTTTT....................................................................	18	1	1.00	0.00	0.00	1.00	0.00
................................TTTTTTTTTTTT---TTTTTTTTTT...................................................	22	51	0.02	0.02	0.00	0.00	0.00

droGri2

ACCTACATTACTAAGGTATGT------TCGATGATTTTGGTTTTTTTTGGCTTTACTTTCACCGTTTACACGACAATTT-CATCCTTTTGCAGTACGTGACCAGTGAG	Size	Hit Count	Total Norm	V109 Male body
....................T------TCAATGATTTTTGTTTTT...............................................................	19	1	1.00	1.00
......ATTACTCAGGTATGA------TCGA.............................................................................	19	1	1.00	1.00

12-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droAna3	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image

20-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droEug1	droBia1	droTak1	droEle1	droRho1	droFic1	droKik1	droAna3	droBip1	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image