Possible Orthologs for dme-mir-2535b

droSim1 - 7 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

chrX:12918307-12918407 +

95.11

ACGTACATCACTAAGGTAAGTGACTATGCCGGGATTGTGGTTATTGAACTTAGCGTCTCCACTCACGGCATTTCATTCACTTGCAGTACATCACCGCCGAG ACGTACATCACCAAGGTAAGTGACTATGCCGGGATTGTGGTTATTATACTTAGCGTCTCCACTCACGGCATTTCATTCACTTGCAGTACATCACCGCCGAG	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
............................................................ACTCACGGCATTTCATTCACTTG..................	23	1	358.00	0.00	294.00	39.00	25.00
............................................................ACTCACGGCATTTCATTCACTT...................	22	1	89.00	3.00	79.00	5.00	2.00
............................................................ACTCACGGCATTTCATTCACT....................	21	1	81.00	3.00	73.00	2.00	3.00
............................................................ACTCACGGCATTTCATTCACTTGCAG...............	26	1	50.00	2.00	34.00	5.00	9.00
............................................................ACTCACGGCATTTCATTCACTTGCA................	25	1	34.00	3.00	22.00	6.00	3.00
............................................................ACTCACGGCATTTCATTCACTTGC.................	24	1	34.00	0.00	29.00	5.00	0.00
...............GTAAGTGACTATGCCGGGAT..................................................................	20	1	31.00	0.00	24.00	6.00	1.00
...............GTAAGTGACTATGCCGGGATTGTGG.............................................................	25	1	29.00	1.00	6.00	4.00	18.00
...............GTAAGTGACTATGCCGGGATT.................................................................	21	1	28.00	0.00	18.00	7.00	3.00
...............GTAAGTGACTATGCCGGGA...................................................................	19	1	13.00	1.00	8.00	1.00	3.00
............................................................ACTCACGGCATTTCATTCAC.....................	20	1	11.00	0.00	10.00	1.00	0.00
............................................................ACTCACGGCATTTCATTCACTTGCAGT..............	27	1	8.00	5.00	1.00	0.00	2.00
............................................................ACTCACGGCATTTCATTCACTGG..................	23	1	6.00	0.00	4.00	1.00	1.00
............................................................ACTCACGGCATTTCATTCACC....................	21	1	6.00	0.00	5.00	1.00	0.00
...............GTAAGTGACTATGCCGGGATTGT...............................................................	23	1	4.00	0.00	2.00	1.00	1.00
...............GTAAGTGACTATGCCGGGATTG................................................................	22	1	4.00	0.00	2.00	0.00	2.00
................TAAGTGACTATGCCGGGATTGT...............................................................	22	1	3.00	0.00	1.00	2.00	0.00
...............GTAAGTGACTATGCCGGGATTGTG..............................................................	24	1	3.00	1.00	1.00	0.00	1.00
...............GTAAGTGACTATGCCGGGATTGTGGTT...........................................................	27	1	3.00	0.00	0.00	2.00	1.00
............................................................ACTCACGGCATTTCATTCACG....................	21	1	2.00	0.00	2.00	0.00	0.00
...............GTAAGTGACTATGCCGGGATTGTGT.............................................................	25	1	2.00	0.00	0.00	0.00	2.00
........................................TTATTATACTTAGCGTCTCC.........................................	20	1	2.00	0.00	2.00	0.00	0.00
..............................................................TCACGGCATTTCATTCACTTGC.................	22	1	2.00	0.00	2.00	0.00	0.00
............................................................ACTCACGGCATTTCATTC.......................	18	1	2.00	0.00	1.00	0.00	1.00
............................................................ACTCACGGCATTTCATTCACTTGT.................	24	1	2.00	0.00	0.00	1.00	1.00
............................................................ACTCACGGCATTTCATTCACTTGCGG...............	26	1	2.00	0.00	1.00	1.00	0.00
............................................................ACTCACGACATTTCATTCACTTG..................	23	1	2.00	0.00	2.00	0.00	0.00
...............................................................TACGGCATTTCATTCACTTG..................	20	1	2.00	0.00	2.00	0.00	0.00
.............................................................CTCACGGCATTTCATTCACTTG..................	22	1	2.00	0.00	2.00	0.00	0.00
............................................................ACTCACGGCATTTCATTCACTTGA.................	24	1	2.00	0.00	0.00	2.00	0.00
............................................................GCTCACGGCATTTCATTCACTTGCAG...............	26	1	1.00	0.00	0.00	1.00	0.00
...............GTGAGTGACTATGCCGGGATTGTGG.............................................................	25	1	1.00	0.00	0.00	0.00	1.00
...............GTAAGTGACTATGCCGGGATTGG...............................................................	23	1	1.00	0.00	1.00	0.00	0.00
............................................................ACTCACGGCATTTCATTCACTTGCAGG..............	27	1	1.00	0.00	0.00	1.00	0.00
............................................................ACTCACGGCATTTCATTCACTTAA.................	24	1	1.00	0.00	1.00	0.00	0.00
...............GTAAGTGACTATGCCGGGATTTTGG.............................................................	25	1	1.00	0.00	0.00	0.00	1.00
............................................................ACTCACGTCATTTCATTCACTTG..................	23	1	1.00	0.00	1.00	0.00	0.00
.............................................................CTCACGGCATTTCATTCACTTGCAGT..............	26	1	1.00	0.00	0.00	0.00	1.00
..............................................................TCACGGCATTTCATTCACTTGCAGT..............	25	1	1.00	1.00	0.00	0.00	0.00
............................................................ACTGACGGCATTTCATTCACTTG..................	23	1	1.00	0.00	1.00	0.00	0.00
............................................................ACTCACGGGATTTCATTCACTTG..................	23	1	1.00	0.00	1.00	0.00	0.00
............................................................ACTCACGGCATTTCATTCCCTTGCAGT..............	27	1	1.00	1.00	0.00	0.00	0.00
............................................................ACTCATGGCATTTCATTCACTT...................	22	1	1.00	0.00	1.00	0.00	0.00
...............................................................CACGGCATTTCATTCACTTGCAG...............	23	1	1.00	0.00	1.00	0.00	0.00
........................TATGCCGGGATTGTGGTTATT........................................................	21	1	1.00	1.00	0.00	0.00	0.00
...............GTAAGTGACTATGCCGGGG...................................................................	19	1	1.00	0.00	0.00	1.00	0.00
............................................................ACTCACGGCATTTCATTCACTTGCAC...............	26	1	1.00	0.00	1.00	0.00	0.00
...............GTAAGTGACTATGCCGGGATTGTGGT............................................................	26	1	1.00	0.00	0.00	0.00	1.00
...............GTAAGTGACTATGCCGGGAA..................................................................	20	1	1.00	0.00	0.00	0.00	1.00
.............................................................CTCACGGCATTTCATTCACTTGCT................	24	1	1.00	0.00	1.00	0.00	0.00
.................AAGTGACTATGCCGGGAT..................................................................	18	1	1.00	0.00	0.00	1.00	0.00
..............................................................TCACGGCATTTCATTCAC.....................	18	1	1.00	0.00	1.00	0.00	0.00
...............GTAAGTGACTATGCCGGGATTGTGGAA...........................................................	27	1	1.00	0.00	0.00	0.00	1.00
...............GTAAGTGACTATGCCGGGATTT................................................................	22	1	1.00	0.00	0.00	1.00	0.00
............................................................ACTCACGGCATTTCATTCACTTGCCG...............	26	1	1.00	1.00	0.00	0.00	0.00
............................................................ACTCACGGAATTTCATTCACTTG..................	23	1	1.00	0.00	1.00	0.00	0.00
........................................TTATTATACTTAGCGTCTCCACT......................................	23	1	1.00	0.00	1.00	0.00	0.00
............................................................ACTCGCGGCATTTCATTCACTTGCAG...............	26	1	1.00	1.00	0.00	0.00	0.00
................TAAGTGACTATGCCGGGATTG................................................................	21	1	1.00	0.00	1.00	0.00	0.00
...............GTAAGTGACTATGCCGGGATG.................................................................	21	1	1.00	0.00	0.00	1.00	0.00
............................................................ACTCACGGCATTTCTTTCACC....................	21	1	1.00	0.00	1.00	0.00	0.00
...............GTAAGTGACTATGCCGGCATTGTGG.............................................................	25	1	1.00	0.00	0.00	0.00	1.00
..............................................................TCACGGCATTTCATTCACTTG..................	21	1	1.00	0.00	1.00	0.00	0.00
................................................CTTAGCGTCTCCACTCACGGC................................	21	1	1.00	0.00	0.00	1.00	0.00

chr3L:17130729-17130826 -

49.98

ACGTACATCACTAAGGTAAGTGACTATGCCGGGATTGTGGTTATTGAACTTAGCGTCTCCACTCACGGCATTTCATTCACTTGCAGTACATCACCGCCGAG
ATGGACAACGGTAACGAAATTATTCTTGCAACCATTGACGTTATATTATCTAATGATTC-TCATACTCTATGTCGTCCA--TCGAAGAGATCGTCGAGGAA

Size

Hit Count

Total Norm

V044
Embryo

M023
Head

M024
Male body

M025
Embryo

chr3L_random:796814-796910 -

45.72

ACGTACATCACTAAGGTAAGTGACTATGCCGGGATTGTGGTTATTGAACTTAGCGTCTCCACTCACGGCATTTCATTCACTTGCAGTACATCACCGCCGAG GTGGTTATC----AGATTGACAACGGTAACGAAATTATAGCCGTGAAGGTTATATTATCTAATGATTCTCATACTCTATGTTGCAGTCGATCGTCGAGGAA	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
..................................................................................GCAGTCGATCTTCGAGGG.	18	1	2.00	0.00	2.00	0.00	0.00

chrX:12150149-12150243 +

45.6

ACGTACATCACTAAGGTAAGTGACTATGCCGGGATTGTGGTTATTGAACTTAGCGTCTCCACTCACGGCATTTCATTCACTTGCAGTACATCACCGCCGAG
ACCATCCTAACTAGGGTTCGTGCAATTCCATAGCCAAACATTC--CAGCTTAC-A-TTCAACTTTCGC--TTTCCCACTTTTCCAGCTGATCGTTGAGGAA

Size

Hit Count

Total Norm

V044
Embryo

M023
Head

M024
Male body

M025
Embryo

chr3R:5674798-5674886 -

38.4

ACGTACATCACTAAGGTAAGTGACTATGCCGGGATTGTGGTTATTGAACTTAGCGTCTCCACTCACGGCATTTCATTCAC-----TT--GCAGTACATCACCGCCGAG
ATCACAATTGTAAAGGTATG-------------------ATAAAAAAACTAAGTTCATTAATAAAACCCCCTTAACCTCATTTTGTTGCAAAGTATGTAGTAGCTGAA

Size

Hit Count

Total Norm

V044
Embryo

M023
Head

M024
Male body

M025
Embryo

chr2R:14811891-14811989 +

36.89

ACGTACATCACTAAGGTAAGTGACTATGCCGGGATTGTGGTTATTGAACTTAGCGTCTCCACTCACGGCATTTCATT--CACTTGCAGTACATCACCGCCGAG
CCGT----CACCATATCCGCCGCATATCTTGCCCAAGTATGCACTGAGTTATTTACTTCCATATATGCTAGCTTAATGGTATTTTTAGATGATTGTGATGGAA

Size

Hit Count

Total Norm

V044
Embryo

M023
Head

M024
Male body

M025
Embryo

chr3L:17063048-17063081 -

6.93

ACGTACATCACTAAGGTAAGTGACTATGCCGGGATTGTGGTTATTGAACTTAGCGTCTCCACTCACGGCATTTCATTCACTTGCAGTACATCACCGCCGAG GCCTCGA---------------------------CTGTGACCA-----------------------------------------AGTATGTGACCAGCGAA	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
.CCTCGA---------------------------CTGTxACCA-----------------------------------------AGTC.............	18	1	2.00	0.00	0.00	0.00	2.00

droSec1 - 5 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

super_8:3476294-3476394 -

94.14

ACGTACATCACTAAGGTAAGTGACTATGCCGGGATTGTGGTTATTGAACTTAGCGTCTCCACTCACGGCATTTCATTCACTTGCAGTACATCACCGCCGAG ACGTACATCACCAAGGTAAGTGACTATGCCGGGATTGTGGTTATTATACTTAGAGTCTCCACTCACGGCATTTCATTCACTTGCAGTACATCACCGCCGAG	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
............................................................ACTCACGGCATTTCATTCACTTGCAGT..............	27	1	53.00	5.00	30.00	18.00
............................................................ACTCACGGCATTTCATTCACTT...................	22	1	50.00	0.00	3.00	47.00
............................................................ACTCACGGCATTTCATTCACT....................	21	1	47.00	1.00	0.00	46.00
..............................................................TCACGGCATTTCATTCACTTGCAGT..............	25	1	21.00	1.00	15.00	5.00
............................................................ACTCACGGCATTTCATTCACTTGCAG...............	26	1	14.00	1.00	5.00	8.00
...............GTAAGTGACTATGCCGGGATTGTGG.............................................................	25	1	11.00	0.00	8.00	3.00
...............GTAAGTGACTATGCCGGGATTGT...............................................................	23	1	6.00	3.00	1.00	2.00
............................................................ACTCACGGCATTTCATTCACTTGCA................	25	1	4.00	2.00	1.00	1.00
.................AAGTGACTATGCCGGGATTGTGGTT...........................................................	25	1	4.00	3.00	0.00	1.00
................TAAGTGACTATGCCGGGATTG................................................................	21	1	4.00	2.00	2.00	0.00
...............GTAAGTGACTATGCCGGGAT..................................................................	20	1	3.00	1.00	1.00	1.00
...............GTAAGTGACTATGCCGGGATTG................................................................	22	1	3.00	2.00	0.00	1.00
................TAAGTGACTATGCCGGGATTGT...............................................................	22	1	3.00	1.00	1.00	1.00
.....................................................................ATTTCATTCACTTGCAGT..............	18	1	2.00	0.00	2.00	0.00
.....................GACTATGCCGGGATTGTGGTT...........................................................	21	1	2.00	2.00	0.00	0.00
.....................GACTATGCCGGGATTGTGGTTATT........................................................	24	1	2.00	0.00	2.00	0.00
..............................................................TCACGGCATTTCATTCACTTGC.................	22	1	2.00	0.00	0.00	2.00
.............................................................CTCACGGCATTTCATTCACTTGCAGT..............	26	1	2.00	0.00	2.00	0.00
.....................GACTATGCCGGGATTGTGGTTA..........................................................	22	1	2.00	0.00	2.00	0.00
..............................................................TCACGGCATTTCATTCACTTGCAGA..............	25	1	2.00	0.00	2.00	0.00
...............GTAAGTGACTATGCCGGGATTGTG..............................................................	24	1	2.00	0.00	2.00	0.00
...............GTAAGTGACTATGCCGGGATTGTGGTT...........................................................	27	1	2.00	1.00	1.00	0.00
..............................................................TCACGGCATTTCATTCACTTGCAG...............	24	1	2.00	0.00	0.00	2.00
...............GTAAGTGACTATGCCGGGATT.................................................................	21	1	2.00	2.00	0.00	0.00
..............................................................TCACGGCATTTCATTCACTTG..................	21	1	2.00	0.00	0.00	2.00
..............................................................TCACGGTATTTCATTCACTTGCAG...............	24	1	1.00	0.00	1.00	0.00
...............GTAAGTGACTATGCCGGG....................................................................	18	1	1.00	0.00	0.00	1.00
.....................GACTATGCCGGGATTGTGGTTAT.........................................................	23	1	1.00	1.00	0.00	0.00
.......................CTATGCCGGGATTGTGGTTATTA.......................................................	23	1	1.00	1.00	0.00	0.00
...................GTGACTATGCCGGGATTGTGGTTA..........................................................	24	1	1.00	1.00	0.00	0.00
.................AAGTGACTATGCCGGGATTGTGT.............................................................	23	1	1.00	0.00	0.00	1.00
............................................TATACTTAGAGTCTCCACTCACGGCA...............................	26	1	1.00	0.00	1.00	0.00
...............TTAAGTGACTATGCCGGGATT.................................................................	21	1	1.00	1.00	0.00	0.00
............................................................ACTCACGGCATTTCATTCACTTGCAT...............	26	1	1.00	0.00	1.00	0.00
..............................................................TCACGGCATTTCATTCACTTGCA................	23	1	1.00	0.00	0.00	1.00
............................................................ACTCTCGGCATTTCATTCACTTGCA................	25	1	1.00	0.00	0.00	1.00
........................TAAGCCGGGATTGTGGGT...........................................................	18	1	1.00	0.00	1.00	0.00
.......................CTATGCCGGGATTGTGGTTATT........................................................	22	1	1.00	1.00	0.00	0.00
.................AAGTGACTATGCCGGGATTG................................................................	20	1	1.00	1.00	0.00	0.00
............................................................ACTCACGGCATTTCATTCACTTGCAGA..............	27	1	1.00	0.00	1.00	0.00
.............................................................CTCACGGCATTTCATTCACTTGCA................	24	1	1.00	0.00	0.00	1.00
.............................................................CTCACGGCATTTCATTCACTTGT.................	23	1	1.00	0.00	0.00	1.00
...................GTGACTATGCCGGGATTGTGGTT...........................................................	23	1	1.00	1.00	0.00	0.00
....................................................................CATTTCATTCACTTGCAGTT.............	20	1	1.00	1.00	0.00	0.00
...................................................AGAGTCTCCACAAACGGC................................	18	1	1.00	0.00	1.00	0.00
............................................................ACTCACGTCATTTCATTCACTTGCAGT..............	27	1	1.00	0.00	1.00	0.00
...................GTGACTATGCCGGGATGCTG..............................................................	20	1	1.00	1.00	0.00	0.00
...............GTAAGTGACTATGCCGGGATTGTGGT............................................................	26	1	1.00	1.00	0.00	0.00
............................................................ACTCACGGCATTTCATTCACTTA..................	23	1	1.00	0.00	0.00	1.00
............................................................ACTCACGGCATTTCATTCACTTGC.................	24	1	1.00	0.00	0.00	1.00
........................................................CTCCACTCACGGCATTTCATTCACTT...................	26	1	1.00	0.00	1.00	0.00
..............................................................TCACGGCATTTCATTCACTT...................	20	1	1.00	0.00	0.00	1.00
..........................................ATTATACTTAGAGTCTCCACTCACGGCA...............................	28	1	1.00	0.00	0.00	1.00
.............................................ATACTTAGAGTCTCCACTCACGGCA...............................	25	1	1.00	1.00	0.00	0.00
............................................................ACTCACGGCATTTCATTCA......................	19	1	1.00	0.00	1.00	0.00
..........................................ATTATACTTAGAGTCTCCACT......................................	21	1	1.00	0.00	1.00	0.00
.............................................................CTCACGGCATTTCATTCACTTGCAG...............	25	1	1.00	0.00	0.00	1.00
............................................................ACTCACGGCATTTCATTCACTTG..................	23	1	1.00	0.00	0.00	1.00
..................................................TAGAGTCTCCACTCACGGCATTTCATT........................	27	1	1.00	1.00	0.00	0.00
............................................................ACTCACTGCATTTCATTCACTTGCA................	25	1	1.00	0.00	1.00	0.00
............................................................ACTCACGGCATTTCATTCAC.....................	20	1	1.00	0.00	0.00	1.00

super_0:9838271-9838364 -

38.88

ACGTACATCACTAAGGTAAGTGACTATGCCGGGATTGTGGTTATTGAAC--TTAGCGT-CTCCACTCACGGCATTTCATTCACTTGCAGTACATCACCGCCGAG AGTTATCAGATTGACAACGGTAACGAAATTATAGCCGTGATTATCTATTATCTAATGATTCTCATACTCTAT----------GTTGCAGTCGATCGTCGAGGAA	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
....................TAACGAAATAGTAGCCGTGA................................................................	20	2	0.50	0.00	0.00	0.50
....................TAACGAAATAGTAGCCGTGAT...............................................................	21	2	0.50	0.00	0.00	0.50

super_58:147977-148067 -

38.37

ACGTACATCACTAAGGTAAGTGACTATGCCGGGATTGTGGTTATTGAACTTAGCGTCTCCACTCACGGCATTTCATTCACTT-------GCAGTACATCACCGCCGAG
ATCACAATTGTCAAGGTATGATAAA-----------------AAAAAACTAAGTACTTTAATAAAACCCCCTTAACCTCATTTTGTTGCAAAGTATGTAGTAGCTGAA

Size

Hit Count

Total Norm

V113
Male body

V114
Embryo

V115
Head

super_1:13719322-13719416 +

37.83

ACGTACATCACTAAGGTAAGTGACTATGCCGGGATTGTGGTTATTGAACTTAGCGTCTCCACTCACGGCATTTCATT--CACTTGCAGTACATCACCGCCGAG CACCATATCCGCCGCATATCTGGCCCAAGTATGCAC--------TATGTTATTTACTTCCATATATGCTAGCTTAATGGTATTTTTAGATGATTGTGATGGAA	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
.............................................ATGTTATTTAATTCGATA........................................	18	1	1.00	0.00	0.00	1.00

super_0:9773156-9773189 -

6.93

ACGTACATCACTAAGGTAAGTGACTATGCCGGGATTGTGGTTATTGAACTTAGCGTCTCCACTCACGGCATTTCATTCACTTGCAGTACATCACCGCCGAG GCCTCGA---------------------------CTGTGACCA-----------------------------------------AGTATGTGACCAGCGAA	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
.........................................CA-----------------------------------------AGTATGTGACCAAGGA.	18	1	1.00	0.00	1.00	0.00

droYak2 - 4 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

chrX:20345010-20345110 -

90.26

ACGTACATCACTAAGGTAAGTGACTATGCCGGGATTGTGGTTATTGAACTTAGCGTCTCCACTCACGGCATTTCATTCACTTGCAGTACATCACCGCCGAG ACGTACATCACCAAGGTAAGTGACAATGCCGGGATTGTGGTTATTGAAAATACCTTCTCCACTCACGGCATTATATTCACTTGCAGTACATCACCGCCGAG	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
............................................................ACTCACGGCATTATATTCACTTG..................	23	1	162.00	0.00	0.00	0.00	1.00	161.00
............................................................ACTCACGGCATTATATTCACTTGCA................	25	1	33.00	0.00	0.00	1.00	0.00	32.00
............................................................ACTCACGGCATTATATTCACTTGC.................	24	1	29.00	0.00	0.00	0.00	0.00	29.00
............................................................ACTCACGGCATTATATTCACTT...................	22	1	20.00	0.00	3.00	0.00	4.00	13.00
............................................................ACTCACGGCATTATATTCACT....................	21	1	19.00	0.00	0.00	0.00	3.00	16.00
............................................................ACTCACGGCATTATATTCACTTGCAG...............	26	1	18.00	1.00	2.00	0.00	3.00	12.00
...............GTAAGTGACAATGCCGGGATTGT...............................................................	23	1	9.00	0.00	0.00	7.00	0.00	2.00
............................................................ACTCACGGCATTATATTCACTTGCAGT..............	27	1	8.00	3.00	2.00	0.00	1.00	2.00
...............GTAAGTGACAATGCCGGGATTGTGG.............................................................	25	1	8.00	0.00	0.00	1.00	0.00	7.00
......................ATAATGCCGGGGTTGTG..............................................................	17	1	6.00	0.00	0.00	0.00	6.00	0.00
...............GTAAGTGACAATGCCGGGATTGTGGTT...........................................................	27	1	6.00	0.00	0.00	2.00	0.00	4.00
...............GTAAGTGACAATGCCGGGATTGTGGT............................................................	26	1	5.00	0.00	0.00	3.00	0.00	2.00
.................AAGTGAGAATGCCGGTAT..................................................................	18	1	3.00	0.00	1.00	1.00	1.00	0.00
...............GTAAGTGACAATGCCGGGATTGTGGTTAT.........................................................	29	1	3.00	0.00	0.00	0.00	0.00	3.00
...............GTAAGTGACAATGCCGGGATTG................................................................	22	1	3.00	1.00	0.00	2.00	0.00	0.00
.....................GACAATGCCGGGATTGTGGTT...........................................................	21	1	2.00	0.00	0.00	2.00	0.00	0.00
...............GTAAGTGACAATGCCGGGATTTGG..............................................................	24	1	2.00	0.00	0.00	0.00	0.00	2.00
............................................................ACTCACGGCATTATATTCACTTGCG................	25	1	2.00	0.00	0.00	0.00	0.00	2.00
.................AAGTGACAATGCCGGGATTGTGGTTATTG.......................................................	29	1	2.00	0.00	0.00	2.00	0.00	0.00
............................................................ACTCACGGCATTATATTCACC....................	21	1	2.00	0.00	0.00	0.00	0.00	2.00
...............GTAAGTGACAATGCCGGGATTGTG..............................................................	24	1	2.00	0.00	0.00	2.00	0.00	0.00
.......................CAATGCCGGGATTGTGGTT...........................................................	19	1	2.00	0.00	0.00	2.00	0.00	0.00
............................................................ACGCACGGCATTATATTCACTTGCAG...............	26	1	1.00	0.00	1.00	0.00	0.00	0.00
............................................................ACTCACGGCATTATATTCACTTGCT................	25	1	1.00	0.00	0.00	0.00	0.00	1.00
............................................................ACTCCCGGCATTTTATTCACTT...................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
...............GTAAGTGACAATGCCGGGAT..................................................................	20	1	1.00	0.00	0.00	0.00	0.00	1.00
...............GTAAGTGACAATGCCGGGA...................................................................	19	1	1.00	0.00	0.00	1.00	0.00	0.00
...............GTAAGTGACAATGCCGGGATTGG...............................................................	23	1	1.00	0.00	0.00	0.00	0.00	1.00
............................................................ACTCACGACATTATATTCACTTGCAGT..............	27	1	1.00	0.00	0.00	0.00	1.00	0.00
..................AGTGACAATGCCGGGATTGT...............................................................	20	1	1.00	0.00	0.00	1.00	0.00	0.00
..............................................................TCACGGCATTATATTCACTTGCAGT..............	25	1	1.00	0.00	0.00	0.00	1.00	0.00
............................................................AATCACGGCATTATATTCACT....................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
............................................................ACTCACGGCATTATGTTCACTTGCAGT..............	27	1	1.00	0.00	0.00	0.00	1.00	0.00
........................AATGCCGGGATTGTGGTTA..........................................................	19	1	1.00	0.00	0.00	1.00	0.00	0.00
............................................................ACTCACGGTATTATATTCACTTG..................	23	1	1.00	0.00	0.00	0.00	0.00	1.00
...............................................................CACGGCATTATATTCACTTTCAGT..............	24	1	1.00	0.00	1.00	0.00	0.00	0.00
...............................................................CACGGCATTATATTCACTTGCA................	22	1	1.00	0.00	0.00	0.00	0.00	1.00
............................................................ACTCACGGCATTATATTCACTTTCA................	25	1	1.00	0.00	1.00	0.00	0.00	0.00
............................................................ACTCACGGCATTATATTCACTTGG.................	24	1	1.00	0.00	0.00	0.00	0.00	1.00
............................................................ACTCACGGCATTATATTCACTTGCCG...............	26	1	1.00	0.00	0.00	0.00	1.00	0.00
............................................................ACTCACGGCATTATATCCACTTGCAGT..............	27	1	1.00	0.00	1.00	0.00	0.00	0.00
........................AATGCGGGGATCGTGG.............................................................	16	1	1.00	0.00	0.00	0.00	1.00	0.00
............................................................ACTCACGCCATTATATTCACT....................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
............................................................ACTCACGGCATTATATTCCCTGG..................	23	1	1.00	0.00	0.00	0.00	0.00	1.00
............................................................ACTCACGGCATTATATTCACTTACAGT..............	27	1	1.00	0.00	1.00	0.00	0.00	0.00
.........................ATGCCGGGATTGTGGTTATT........................................................	20	1	1.00	0.00	0.00	1.00	0.00	0.00
.................AAGTGACAATGCCGGGATTG................................................................	20	1	1.00	0.00	0.00	1.00	0.00	0.00
...............................................................CACGGCATTATATTCACTTGCAGT..............	24	1	1.00	0.00	0.00	0.00	1.00	0.00
.......................TAATGCCGGGGTTGTG..............................................................	16	1	1.00	0.00	0.00	0.00	1.00	0.00
.................AAGTGACCATGCCGGGATTGTGG.............................................................	23	1	1.00	0.00	0.00	1.00	0.00	0.00
..................AGTGACAATGCCGGGCTTGTGGTTA..........................................................	25	1	1.00	0.00	0.00	1.00	0.00	0.00
.................AAGTGACAATGCCGGGATTGTGGT............................................................	24	1	1.00	0.00	0.00	1.00	0.00	0.00
....................................................................CATTATATTCACTTGCAGTT.............	20	1	1.00	0.00	0.00	1.00	0.00	0.00
............................................................ACTTACGGCATTATATTCACTTGC.................	24	1	1.00	0.00	0.00	0.00	0.00	1.00
............................................................ACTCACGGCATTATxTTCACT....................	20	1	1.00	0.00	0.00	0.00	0.00	1.00
.................AAGTGACAATGCCGGGATTGT...............................................................	21	1	1.00	0.00	0.00	1.00	0.00	0.00
.......................CAATGCCGGGATTGTGGTTATTG.......................................................	23	1	1.00	0.00	0.00	1.00	0.00	0.00
.....................GACAAGGCCGGGAATGTGG.............................................................	19	1	1.00	0.00	0.00	1.00	0.00	0.00
...............GTAAGTGACAATTCCGGGATTGTGG.............................................................	25	1	1.00	0.00	0.00	0.00	0.00	1.00
..................AGTGACAATGCCGGGATTG................................................................	19	1	1.00	0.00	0.00	1.00	0.00	0.00
.....................GACAAGGCCGGGAATGTGGT............................................................	20	1	1.00	0.00	0.00	1.00	0.00	0.00
.............................................................CTCACGGCATTATATTCACTTGCAG...............	25	1	1.00	0.00	1.00	0.00	0.00	0.00
...............................................................CACGGCATTATATTCACTTGC.................	21	1	1.00	0.00	0.00	0.00	0.00	1.00
.............................................................CTCCCGGCATTATATTCACGTGCAG...............	25	1	1.00	0.00	0.00	0.00	1.00	0.00
....................TTACAATGCCGGTATTGTG..............................................................	19	1	1.00	0.00	0.00	0.00	1.00	0.00
............................................................ACTCACGGCATTATATTCACTTGCAGTT.............	28	1	1.00	0.00	0.00	1.00	0.00	0.00
............................................................ACTCACGGCATTATATTCACTGG..................	23	1	1.00	0.00	0.00	0.00	0.00	1.00
.................AAGTGACAATGCCGGGATTGTG..............................................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
............................................................ACTCACGCCATTATATTCACTTT..................	23	1	1.00	0.00	0.00	0.00	1.00	0.00
.....................GACAATGCCGGGATTGTGGTTAT.........................................................	23	1	1.00	0.00	0.00	1.00	0.00	0.00

chr3L:16265543-16265639 +

46.66

ACGTACATCACTAAGGTAAGTGACTATGCCGGGATTGTGGTTATTGAACTTAGCGTCTCCACTCACGGCATTTCATTCAC----TTGCAGTACATCACCGCCGAG
TTGACTATAAATTTGACAAAGG----TATCGGAATAATAGCTATATTGTTCAGATTATCC----AAAGTTTCTCATACTCTATGTTGCAGACCATCGTCGAGGAA

Size

Hit Count

Total Norm

V046
Embryo

V052
Head

V120
Male body

V058
Head

M026
Head

chr3R:4580746-4580833 +

35.72

ACGTACATCACTAAGGTAAGTGACTATGCCGGGATTGTGGTTATTGAACTTAGCGTCTCCACTCA----CGGCATTTCATTCACTTG--CAGTACATCACCGCCGAG
ATCACGATTGCCAAGGTAT-------------------GATAAACTAACTAAGTACATTAATAAAATCCCTAAACCTTATTTTGTTGCAAAGTATGTAGTAGCTGAA

Size

Hit Count

Total Norm

V046
Embryo

V052
Head

V120
Male body

V058
Head

M026
Head

chr3L:16329852-16329885 +

7.59

ACGTACATCACTAAGGTAAGTGACTATGCCGGGATTGTGGTTATTGAACTTAGCGTCTCCACTCACGGCATTTCATTCACTTGCAGTACATCACCGCCGAG
---------------------------GCCGCGACTGTGACCA-----------------------------------------AGTATGTGACCAGCGAG

Size

Hit Count

Total Norm

V046
Embryo

V052
Head

V120
Male body

V058
Head

M026
Head

droEre2 - 4 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scaffold_4690:17698644-17698744 -

90.26

ACGTACATCACTAAGGTAAGTGACTATGCCGGGATTGTGGTTATTGAACTTAGCGTCTCCACTCACGGCATTTCATTCACTTGCAGTACATCACCGCCGAG ACGTACATCACCAAGGTAAGTGACAGTGCCGGGATTGTGGTTATTAAAAATACCTTCTCCACTCACGGCATTTCATTCACTTGCAGTACATCACCGCCGAG	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
............................................................ACTCACGGCATTTCATTCACT....................	21	1	113.00	0.00	1.00	0.00	112.00
............................................................ACTCACGGCATTTCATTCACTT...................	22	1	109.00	0.00	3.00	0.00	106.00
............................................................ACTCACGGCATTTCATTCACTTGCAG...............	26	1	25.00	1.00	0.00	0.00	24.00
............................................................ACTCACGGCATTTCATTCACTTGCAGT..............	27	1	18.00	1.00	0.00	0.00	17.00
...............GTAAGTGACAGTGCCGGGATTGTGG.............................................................	25	1	17.00	0.00	0.00	0.00	17.00
............................................................ACTCACGGCATTTCATTCACTTGCA................	25	1	14.00	0.00	3.00	0.00	11.00
................TAAGTGACAGTGCCGGGATTGT...............................................................	22	1	5.00	0.00	0.00	0.00	5.00
...............GTAAGTGACAGTGCCGGGA...................................................................	19	1	4.00	0.00	0.00	0.00	4.00
............................................................ACTCACGGCACTTCATTCACTT...................	22	1	3.00	0.00	0.00	0.00	3.00
...............GTAAGTGACAGTGCCGGGATT.................................................................	21	1	3.00	0.00	0.00	0.00	3.00
................TAAGTGACAGTGCCGGGATTGTGG.............................................................	24	1	3.00	0.00	0.00	0.00	3.00
...............GTAAGTGACAGTGCCGGGAT..................................................................	20	1	3.00	0.00	0.00	0.00	3.00
............................................................ACTCACGGCATTTCATTCACTTGC.................	24	1	3.00	0.00	2.00	0.00	1.00
............................................................AATCACGGCATTTCATTCACT....................	21	1	3.00	0.00	0.00	0.00	3.00
.....................................................................ATTTCATTCACTTGCAGT..............	18	1	2.00	0.00	0.00	0.00	2.00
.............................................................CTCACGGCATTTCATTCACT....................	20	1	2.00	0.00	0.00	0.00	2.00
............................................................ACTCATGGCATTTCATTCACT....................	21	1	2.00	0.00	0.00	0.00	2.00
............................................................ACTCACGGCATTTCATTCACTTACA................	25	1	2.00	0.00	0.00	0.00	2.00
...............GTAAGTGACAGTGCCGGGATTG................................................................	22	1	2.00	0.00	0.00	0.00	2.00
............................................................ACTCACGGCATTTCATTCACTTGCAGA..............	27	1	2.00	0.00	0.00	0.00	2.00
............................................................ACTCATGGCATTTCATTCACTT...................	22	1	2.00	0.00	0.00	0.00	2.00
............................................................ACTCACGGCATTTCCTTCACTT...................	22	1	2.00	0.00	1.00	0.00	1.00
...............GTAAGTGACAGTGCCGGGATTGT...............................................................	23	1	2.00	0.00	0.00	0.00	2.00
...............GTAAGTGACAGTGCCGGGATTGTG..............................................................	24	1	2.00	0.00	0.00	0.00	2.00
............................................................ACTCACGGCATTTCATTCACTTG..................	23	1	2.00	0.00	0.00	0.00	2.00
............................................................ACTCACTGCATTTCATTCACTT...................	22	1	2.00	0.00	0.00	0.00	2.00
............................................................ACTCACGGCATTTCATTCAC.....................	20	1	2.00	0.00	1.00	0.00	1.00
...............GTAAGTGACAGTGCCGGAATTGTGG.............................................................	25	1	1.00	0.00	0.00	0.00	1.00
...............GTAAGTGACAGTGCCTGGATTGTGG.............................................................	25	1	1.00	0.00	0.00	0.00	1.00
...............................................................CACGGCATTTCATTCACTTGCA................	22	1	1.00	0.00	0.00	0.00	1.00
................TAAGTGACAGTGCCGGGATTGTG..............................................................	23	1	1.00	0.00	0.00	0.00	1.00
............................................................ACTCACGGCATCTCATTCACTT...................	22	1	1.00	0.00	0.00	0.00	1.00
............................................................ACTCACGGCATTTCATTCACTTGCAT...............	26	1	1.00	0.00	0.00	0.00	1.00
............................................................ACTCGCGGCATTTCATTCACT....................	21	1	1.00	0.00	0.00	0.00	1.00
............................................................ACTCACGGCATTTCATTAACT....................	21	1	1.00	0.00	0.00	0.00	1.00
............................................................ACTCACGTCATTTCATTCACTTGCA................	25	1	1.00	0.00	0.00	0.00	1.00
............................................................ACTAACGGCATTTCATTCACT....................	21	1	1.00	0.00	0.00	0.00	1.00
............................................................AATCACGGAATTTCATTCACT....................	21	1	1.00	0.00	0.00	0.00	1.00
........................AGTGCCGGGATTGTGGTT...........................................................	18	1	1.00	0.00	0.00	0.00	1.00
............................................................ACTCACGGAATTTCATTCCCTT...................	22	1	1.00	0.00	0.00	0.00	1.00
............................................................ACTCACGGCATTTCATTCACTTACAG...............	26	1	1.00	0.00	0.00	0.00	1.00
...............GTAAGTGACAGTGCCGGGATTGAGG.............................................................	25	1	1.00	0.00	0.00	0.00	1.00
............................................................ACTCACGGAATTTCATTAACT....................	21	1	1.00	0.00	0.00	0.00	1.00
............................................................ACTAAAGGCATTTCATTCACTTGCA................	25	1	1.00	0.00	0.00	0.00	1.00
............................................................ACTCACGGCATTTCATTCACTTGTA................	25	1	1.00	0.00	0.00	0.00	1.00
.............................................................CTCACGGCATTTCATTCACTTGCAGT..............	26	1	1.00	0.00	1.00	0.00	0.00
............................................................ACTCACGGCATTTCATTCACTTGT.................	24	1	1.00	0.00	0.00	0.00	1.00
............................................................ACTCACGGCATTTCCTTCACTTGA.................	24	1	1.00	0.00	0.00	0.00	1.00
............................................................ACTCACGGCATTTCATTAACTT...................	22	1	1.00	0.00	0.00	0.00	1.00
............................................................ACTCACGACATTTCATTCACT....................	21	1	1.00	0.00	0.00	0.00	1.00
...................GTGACAGTGCCGGGATTGTGGTTAT.........................................................	25	1	1.00	0.00	0.00	0.00	1.00
............................................................ATTAACGGCATTTCATTCACT....................	21	1	1.00	0.00	0.00	0.00	1.00
............................................................ACTCACGGCATCTCATTCACTTGCAG...............	26	1	1.00	0.00	0.00	0.00	1.00
.....................GACAGTGCCGGGATTGTGGTTATT........................................................	24	1	1.00	0.00	0.00	0.00	1.00
...............................................................CACGGCATTTCATTCACTTGCAG...............	23	1	1.00	0.00	0.00	0.00	1.00
............................................................ACTAACGGCATTTCATTCACTTGCAG...............	26	1	1.00	0.00	0.00	0.00	1.00
............................................................ACTCACGTCATTTCATTCACTTGCAGT..............	27	1	1.00	0.00	0.00	0.00	1.00
............................................................ACTCACTGCATTTCATTCA......................	19	1	1.00	0.00	0.00	0.00	1.00
...............GTAAGTGACAGTGCCGGGATTGGGG.............................................................	25	1	1.00	0.00	0.00	0.00	1.00
...............................................................CACGGCATTTCATTCACTTGCAGT..............	24	1	1.00	0.00	0.00	0.00	1.00
............................................................ACTCACGGCATTTAATTCACT....................	21	1	1.00	0.00	0.00	0.00	1.00
...............GTACGTGACAGTGCCGGGATTGTGG.............................................................	25	1	1.00	0.00	0.00	0.00	1.00
.....................GACAGTGCCGGGATTGTGGT............................................................	20	1	1.00	1.00	0.00	0.00	0.00
...............TTAAGTGACAGTGCCGGGATTGTGG.............................................................	25	1	1.00	0.00	0.00	0.00	1.00
............................................................ACTCACTGCATTTCATTCACTTGCAGT..............	27	1	1.00	0.00	0.00	0.00	1.00
............................................................ACTCACGGCATTTCATTCAAT....................	21	1	1.00	0.00	0.00	0.00	1.00
............................................................ACTCACGTCATTTCATTCACTTGC.................	24	1	1.00	0.00	0.00	0.00	1.00
...............GTAAGTGACAGTGCCGGG....................................................................	18	1	1.00	0.00	0.00	0.00	1.00
............................................................ACTCACGGCATTTCATTCA......................	19	1	1.00	0.00	1.00	0.00	0.00
............................................................ACTAACGTCATTTCATTCACT....................	21	1	1.00	0.00	0.00	0.00	1.00
............................................................ACTCACGGCATTTCCTTCCCT....................	21	1	1.00	0.00	1.00	0.00	0.00
....................TGACAGTGCCGGGATTGT...............................................................	18	1	1.00	0.00	0.00	0.00	1.00
............................................................ACTCACGTCATTTCATTCACTTGCAG...............	26	1	1.00	0.00	0.00	0.00	1.00
............................................................ACTCACGACATTTCATTCACTTGCAG...............	26	1	1.00	0.00	0.00	0.00	1.00
.............................................................TTCACGGCATTTCATTCACTT...................	21	1	1.00	0.00	0.00	0.00	1.00
............................................................ACTCACTGCATTTCATTCACTTGCA................	25	1	1.00	0.00	0.00	0.00	1.00

scaffold_4770:5861711-5861797 -

36.54

ACGTACATCACTAAGGTAAGTGACTATGCCGGGATTGTGGTTATTGAACTTAGCGTCTCCA--------CTCACGGCATTTCATTCACTTGCAGTACATCACCGCCGAG
ATCACAATTGCCAAGGTA-------------------TGATAAACAAACTACGTACATTAATAAAATCCCTAAAGCTCTTTTGTTG---CAAAGTATGTAGTAGCTGAA

Size

Hit Count

Total Norm

V040
Embryo

V060
Head

V047
Embryo

V108
Head

scaffold_4784:16071397-16071417 +

14.14

ACGTACATCACTAAGGTAAGTGACTATGCCGGGATTGTGGTTATTGAACTTAGCGTCTCCACTCACGGCATTTCATTCACTTGCAGTACATCACCGCCGAG
T--------------------------------------------------------------------------------TGCAGTTTATCGTCGATGAA

Size

Hit Count

Total Norm

V040
Embryo

V060
Head

V047
Embryo

V108
Head

None

scaffold_4784:16131693-16131726 +

6.93

ACGTACATCACTAAGGTAAGTGACTATGCCGGGATTGTGGTTATTGAACTTAGCGTCTCCACTCACGGCATTTCATTCACTTGCAGTACATCACCGCCGAG
GCCTCGA---------------------------CTGTGACCA-----------------------------------------AGTATGTGACCAGCGAA

Size

Hit Count

Total Norm

V040
Embryo

V060
Head

V047
Embryo

V108
Head

droFic1 - 5 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scf7180000454077:620842-620934 -

64.69

ACGTACATCACTAAGGTAAGTGACTATGCCGGGATTGTGGTTATTGAACTTAG-----CGTCTCCACTCACGGCATTTCATTCACTTGCAGTACATCACCGCCGAG
ACGTACATCACCAAGGTAAGT-------------TTATATTTATTTGTGTTGGTGTACCTCCTCCACTCACAACATTTCATTCACCTGCAGTTCATTACCGCCGAG

Size

Hit Count

Total Norm

scf7180000453851:885342-885428 +

47.32

ACGTACATCACTAAGGTAA---GTGACTATGCCGGGATTGTGGTTATTGAACTTAGCGTCTCCACTCACGGCATTTCATTCACTTGCAGTACATCACCGCCGAG
ATGGGTATGATTAAGGTAAGCAGTGGCTATATCCGGATTGAAGGTTTT-----------------ACACCACAATACTTTGAATTTCAGTTTATCGTCGCAGAG

Size

Hit Count

Total Norm

scf7180000454126:827624-827720 +

41.86

ACGTACATCACTAAGGTAAGTGACTATGCCGGGATTGTGGTTATTGAACTTAGCGTCTCCACTCACGGCATTTCAT-----------------------TCACTTGCAGTACATCACCGCCGAG
ATAACGATCGTCAAGGTAAG---------------------------ATCTAAAGTTTCCCATGCAAATTTTTAATCTTATTCGCCTTGTTTTCGCTGATTTCTTAAAGTATATAGTTGCCGAA

Size

Hit Count

Total Norm

scf7180000453784:578299-578325 +

16.16

ACGTACATCACTAAGGTAAGTGACTATGCCGGGATTGTGGTTATTGAACTTAGCGTCTCCACTCACGGCATTTCATTCACTTGCAGTACATCACCGCCGAG
A--------------------------------------------------------------------------TTCTATTGCAGAGCATTGTGGAGGAA

Size

Hit Count

Total Norm

scf7180000454107:1314064-1314093 -

7.2

ACGTACATCACTAAGGTAAGTGACTATGCCGGGATTGTGGTTATTGAACTTAGCGTCTCCACTCACGGCATTTCATTCACTTGCAGTACATCACCGCCGAG
TCCACTGTGACCAA-----------------------------------------------------------------------GTTCGTGACCGCCGAA

Size

Hit Count

Total Norm

None

droEug1 - 6 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scf7180000408193:313028-313128 +

83.46

ACGTACATCACTAAGGTAAGTGACTATGCCGGGATTGTGGTTATTGAACTTAGCGTCTCCACTCACGGCATTTCATTCACTTGCAGTACATCACCGCCGAG
ACGTATATCACCAAGGTAAGTGGCTATGCCGGGATCGTGGTTGATCTATGTACCTTCTCCACTCACGGCATTTCATTCACTTGTAGTACATCACCGCTGAA

Size

Hit Count

Total Norm

scf7180000409672:2481139-2481237 -

65.35

ACGTACATCACTAAGGTAAGTGACTATGCCGGGATTGTGGTTATTGAACTTAGCGTCTCCACTCACGGCATTTCATTCACTTGCAGTACATCACCGCCGAG
ATAAACATCATTAAAGTAAGTGTCTATAGCAGGATTGATGAACAAATATATAGATTATGCATTTCCTGGCTTTC--TCATTTGCAGTTCATCGCCGCCGAG

Size

Hit Count

Total Norm

scf7180000409804:2112763-2112857 +

44.65

ACGTACATCACTAAGGTAAGTGACTATGCCGG-----GATT---GTGGTTATTGAACTTAGCGTCTCCACTCACGGCATTTCATTCACTTGCAGTACATCACCGCCGAG
ATGACAACGGTTAAGGTATG--------CTAAGATCAGCTTAAAATATTAATCAAAATTCCAATCTTATTTTGTTGTATTT------CTTAAAGTACATCGTTGACGAA

Size

Hit Count

Total Norm

scf7180000409474:1823994-1824073 -

30.6

ACGTACATCACTAAGGTAAGTGACTATGCCGGGATTGTGGTTATTGAACTTAGCGTCTCCACTCACGGCATTTCATTCAC--TTGCAGTACATCACCGCCGAG
GCATATCTTGCCCAAGT-------------------ATGCTTATTTAGCTTGATATGAGTA----CAGTAGCTTATTTGTTGTTTCAGATGATTGTGACGGAA

Size

Hit Count

Total Norm

scf7180000409471:1768065-1768089 -

16.16

ACGTACATCACTAAGGTAAGTGACTATGCCGGGATTGTGGTTATTGAACTTAGCGTCTCCACTCACGGCATTTCATTCACTTGCAGTACATCACCGCCGAG
----------------------------------------------------------------------------TCCATTGCAGTCAATCGTCGAGGAA

Size

Hit Count

Total Norm

None

scf7180000409471:1834594-1834623 +

6.0

ACGTACATCACTAAGGTAAGTGACTATGCCGGGATTGTGGTTATTGAACTTAGCGTCTCCACTCACGGCATTTCATTCACTTGCAGTACATCACCGCCGAG
TCGACGGTGACCAAG-----------------------------------------------------------------------TTTGTGAACATCGAA

Size

Hit Count

Total Norm

None

droBia1 - 6 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scf7180000302187:362231-362333 +

81.19

ACGTACATCACTAAGGTAAGTGACTATGCCGGGATTGTGGTTATTGAACTTAG----------CGTCTCCACTCACGGCATTTCATTCACTTGCAGTACATCACCGCCGAG
ACGTACATCACCAAAGTAAGTGGCCATGCCGGGATTGTGGTT--------TAACCAGAGGTTCCTCCTCCACTCACGGCATTTCATTCACTTGCAGTACATCACCGCCGAG

Size

Hit Count

Total Norm

scf7180000301506:2066483-2066576 +

52.36

ACGTACATCACTAAGGTAAGTGACTATGCCGGGATTGTGGTTA--------TTGAACTTAGCGTCTCCACTCACGGCATTTCATTCACTTGCAGTACATCACCGCCGAG
ACGTGTATCACCAAAGTATGTTGCTGTACCAAAG-----GTTAACTACATTCTTAATCCAG--TTTCCATCCATT--------TCCGATCGCAGTCCATTGCCGTTGAG

Size

Hit Count

Total Norm

scf7180000302428:5652336-5652428 -

48.31

ACGTACATCACTAAGGTAAGTGACTATGCCGGGATTGTGGTTATTGAACTTAGCGTCTCCACTCACGGCATT-T----CATTCACTTGCAGTACATCACCGCCGAG
TCATAAGTCT--------GACAAAGGTATCGAGATCGAAGCTGTGTAAGC---CATATC--CTCCTGACTTTCTCATACTCTTCCTTACAGTCCATAGTCGAAGAA

Size

Hit Count

Total Norm

scf7180000302402:1582526-1582623 +

44.68

ACGTACATCACTAAGGTAAG------TGACTATGCCGGGATTGTGGTTATTGAACTTAGCGTCTCCACTCA-----CGGCATTTCATTCACTTGCAGTACATCACCGCCGAG
ATAACGATTTCCAAGGTATGACAAGCTAACTAAGTAGGGTAATTAATTATA---------ATTACTATTTATTTTTTGA-----TAATTTTCCCAAGAACATCGTAGCTGAA

Size

Hit Count

Total Norm

scf7180000302291:3167588-3167669 -

33.29

ACGTACATCACTAAGGTAAGT-GACTATGCCGGGATTGTGGTTATTGAACTTAGCGTCTCCACTCACGGCATTTCATTCAC---TTGCAGTACATCACCGCCGAG
GCATATCTTGCCCAAGTATCCCCACTAAGCCC-----------------------GATCACGTGTATGGTAGCTGATTAGTATTTTTTAGATGATTGTAATGGAG

Size

Hit Count

Total Norm

scf7180000302193:1033830-1033859 -

6.3

ACGTACATCACTAAGGTAAGTGACTATGCCGGGATTGTGGTTATTGAACTTAGCGTCTCCACTCACGGCATTTCATTCACTTGCAGTACATCACCGCCGAG
TCGGCGGTGACCAA-----------------------------------------------------------------------GTACATAACAGCCGAG

Size

Hit Count

Total Norm

None

droTak1 - 7 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scf7180000415158:278082-278185 +

82.38

ACGTACATCACTAAGGTAAGTGACTATGCCGGGATTGTGGTT----ATTGAACTTAG--CGTCTCCACTCACGGCATTTCATTCACTTGCAGTACATCACCGCCGAG
ACGTACATCACCAAGGTAAGTGGCTATGCCGGGATTGTGGTTTACAATAGAA---AGATCCCCTCCACTCACGGCATTTCATTCACTTGCAGTACATCACCGCCGAG

Size

Hit Count

Total Norm

scf7180000414326:19913-20008 -

63.37

ACGTACATCACTAAGGTAAGTGACTATGCCGGGATTGTGGTTATTGAACTTAGCGTCTCCACTCACGGCATTTCATTCACTTGCAGTACATCACCGCCGAG
CTGTGCATCACCAAGGTAAGTAGCAATACCGGAC-AAC----GTTTTTCCCTTCTCCTCCAATCACGGTATTGTCTTCGCTTTCAGTTTATCGCCGCCGAG

Size

Hit Count

Total Norm

scf7180000412369:72190-72273 +

35.77

ACGTACATCACTAAGGTAAGTGAC-TATGCCGGGATTGTGGTTATTGAACTTAGCGTCTCCACTCA---CGGCATTTCATTCACTTGCAGTACATCACCGCCGAG
GCATATATTGCTCAAGTATTCTTTCCAAGTCGAA-----------------TAGGGTTTT----TATGGTAGCTGATTAGTATTTTTCAGATGATTGTAATGGAA

Size

Hit Count

Total Norm

scf7180000415220:107867-107900 -

21.21

ACGTACATCACTAAGGTAAGTGACTATGCCGGGATTGTGGTTATTGAACTTAGCGTCTCCACTCACGGCATTTCATTCACTT---GCAGTACATCACCGCCGAG
TTTT----------------------------------------------------------------------GATAACTTTCCAAAGAACATCGTTGCCGAA

Size

Hit Count

Total Norm

scf7180000415235:2679-2708 +

17.99

ACGTACATCACTAAGGTAAGTGACTATGCCGGGATTGTGGTTATTGAACTTAGCGTCTCCACTCACGGCATTTCATTCACTTGCAGTACATCACCGCCGAG
ATTTC-----------------------------------------------------------------------TCCGTTACAGTATATTGTCCAAGAA

Size

Hit Count

Total Norm

None

scf7180000415261:885281-885310 +

17.99

Size

Hit Count

Total Norm

None

scf7180000415409:522604-522633 -

6.3

ACGTACATCACTAAGGTAAGTGACTATGCCGGGATTGTGGTTATTGAACTTAGCGTCTCCACTCACGGCATTTCATTCACTTGCAGTACATCACCGCCGAG
TCGGTGGTTACCAA-----------------------------------------------------------------------GTATGTGACGGCCGAA

Size

Hit Count

Total Norm

None

droEle1 - 3 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scf7180000490214:747380-747480 +

83.46

ACGTACATCACTAAGGTAAGTGACTATGCCGGGATTGTGGTTATTGAACTTAGCGTCTCCACTCACGGCATTTCATTCACTTGCAGTACATCACCGCCGAG
ACGTACATCACCAAGGTAAGTGGGTATGCCGGGACTGTGGTTCTAAATGCCATCACCACCACTCACGGCATTTCATTCACTTGCAGTACATCACCGCCGAG

Size

Hit Count

Total Norm

scf7180000491008:1106765-1106877 -

34.49

ACGTACATCACTAAGGTAAGT-------GACTATGCCGGGATTGTGGTTATTGAACTTAGCGTCTCCACTCACGGCATTTCATTCACTTG--------------------------CAGTACATCACCGCCGAG
ATAACTATCGCGAAGGTATGATTATCTAGCTTAAGC---------------------TAGCAATCCCACTCTTAATATTAATCTCATTTGTCAATTTTTTTTCATGTGATTTTCCAAAGAATATAGTTGCCGAA

Size

Hit Count

Total Norm

scf7180000490993:651623-651652 -

5.7

ACGTACATCACTAAGGTAAGTGACTATGCCGGGATTGTGGTTATTGAACTTAGCGTCTCCACTCACGGCATTTCATTCACTTGCAGTACATCACCGCCGAG
TCGACGGTGACCAA-----------------------------------------------------------------------GTATGTGACCACCGAG

Size

Hit Count

Total Norm

None

droRho1 - 5 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scf7180000780082:43771-43867 +

86.34

ACGTACATCACTAAGGTAAGTGACTATGCCGGGATTGTGGTTATTGAACTTAGCGTCTCCACTCACGGCATTTCATTCACTTGCAGTACATCACCGCCGAG
ACGTACATCACCAAGGTAAGTGGGTATGCCGGGATTGTGGTTAATACACCT----CCTCCACTCACGGCATTTCATTCACTTGCAGTACATCACCGCCGAG

Size

Hit Count

Total Norm

scf7180000780274:19967-20067 -

46.76

ACGTACATCACTAAGGTAAGTGACTATGCCGGGATTGTGGTTATTGAACTTAGCGTCTCCACTCACGGCATTTCATTCAC----------------------TTGCAGTACATCACCGCCGAG
ATAACAATCGCCAAGGTA-------------------TGATTAGCAAGTTAAGTGTAG-CACTCATAA--TCTAATTTATCTTTTTTGTTTTTTGTGATTTTTCAAAGTATATAGTAGCCGAA

Size

Hit Count

Total Norm

scf7180000777892:3476-3530 +

30.3

ACGTACATCACTAAGGTAAGTGACTATGCCGGGATTGTGGTTATTGAACTTAGCGTCTCCACTCAC--GGCATTTCA-----TTCACTTGCAGTACATCACCGCCGAG
-----------------------------------------------------CGTTTTCACTTATCCAGCGTTTTTCCAATCTCCGTTACAGTATATTGTCCAGGAA

Size

Hit Count

Total Norm

scf7180000779490:35650-35679 -

6.0

ACGTACATCACTAAGGTAAGTGACTATGCCGGGATTGTGGTTATTGAACTTAGCGTCTCCACTCACGGCATTTCATTCACTTGCAGTACATCACCGCCGAG
TCGACTGTGACAAA-----------------------------------------------------------------------GTATGTGACCACCGAA

Size

Hit Count

Total Norm

None

scf7180000777499:5611-5613 +

2.02

Size

Hit Count

Total Norm

None

droKik1 - 4 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scf7180000302395:540407-540502 -

57.81

ACGTACATCACTAAGGTAAGTGACT-ATGCCGGGATTGTGGTTATTGAACTTAGCGTCTCCACTCACGG-----------CA----TTTCATTCACTTGCAGTACATCACCGCCGAG
ACGTACATCACCAAGGTAAGTCTCCGAGAACGGGAAC---------GAATC------------GCACAGATCCATATCTGTATCTGTATCCTTCTTGTGTAGTACATCACCGCCGAG

Size

Hit Count

Total Norm

scf7180000302228:74515-74604 -

38.7

ACGTACATCACTAAGGTAAGTGACTATGCCGGGATTGTGGTTATTGAACTTAGCGTCTCCACTCACGGCATTTCATTCACTTGCAGTACAT-CACCGCCGAG-----------------------------
GC-CATATCATCGGCATATCTGGCACA---------------------------------------GGTG-CATATATATATGTGGTACAGTGGCTGCAGAGTCTTTATTTTATGTTTTAGGTAATCATTG

Size

Hit Count

Total Norm

scf7180000302351:156278-156307 +

6.6

ACGTACATCACTAAGGTAAGTGACTATGCCGGGATTGTGGTTATTGAACTTAGCGTCTCCACTCACGGCATTTCATTCACTTGCAGTACATCACCGCCGAG
TCGGTGGTGACCAG-----------------------------------------------------------------------GCATGTGGCCACCGAG

Size

Hit Count

Total Norm

None

scf7180000302351:161972-162001 +

5.7

ACGTACATCACTAAGGTAAGTGACTATGCCGGGATTGTGGTTATTGAACTTAGCGTCTCCACTCACGGCATTTCATTCACTTGCAGTACATCACCGCCGAG
TCTGTGGTGACCAAGG-----------------------------------------------------------------------ATGTGGCCGCCGAA

Size

Hit Count

Total Norm

None

droAna3 - 5 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scaffold_13334:1052535-1052576 +

30.3

ACGTACATCACTAAGGTAAGTGACTATGCCGGGATTGTGGTTATTGAACTTAGCGTCTCCACTCACGGCATTTCATTCACT-TGCAGTACATCACCGCCGAG
A------------------------------------------------------------TCCAAGTTATTTCCTTCAATTTTCAGTTCATAACCGCCGAA

Size

Hit Count

Total Norm

V105
Male body

V106
Head

V055
Unknown

V039
Embryo

scaffold_13334:1051909-1051935 +

22.22

ACGTACATCACTAAGGTAAGTGACTATGCCGGGATTGTGGTTATTGAACTTAGCGTCTCCACTCACGGCATTTCATTCACTTGCAGTACATCACCGCCGAG
ACTTATATTACAAAGGTAAGTGGCTAT--------------------------------------------------------------------------

Size

Hit Count

Total Norm

V105
Male body

V106
Head

V055
Unknown

V039
Embryo

scaffold_13340:2378392-2378421 +

18.57

ACGTACATCACTAAGGTAAGTGACTATGCCGGGATTGTGGTTATTGAACTTAGCGTCTCCACTCACGGCATTTCATTCACTTGCAGTACATCACCGCCGAG
TTTTGTTCTTTCAA-----------------------------------------------------------------------GCATATTATTGCCGAA

Size

Hit Count

Total Norm

V105
Male body

V106
Head

V055
Unknown

V039
Embryo

None

scaffold_13337:4815362-4815385 -

16.16

ACGTACATCACTAAGGTAAGTGACTATGCCGGGATTGTGGTTATTGAACTTAGCGTCTCCACTCACGGCATTTCATTCACTTGCAGTACATCACCGCCGAG
CTTGCC-----------------------------------------------------------------------------TAGGTCATAATCGAGGAG

Size

Hit Count

Total Norm

V105
Male body

V106
Head

V055
Unknown

V039
Embryo

None

scaffold_13337:14423216-14423245 -

4.5

ACGTACATCACTAAGGTAAGTGACTATGCCGGGATTGTGGTTATTGAACTTAGCGTCTCCACTCACGGCATTTCATTCACTTGCAGTACATCACCGCCGAG
ACCGTGGTCGCCAGAGC-----------------------------------------------------------------------CGTAACCAACGAA

Size

Hit Count

Total Norm

V105
Male body

V106
Head

V055
Unknown

V039
Embryo

None

droBip1 - 4 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scf7180000396733:700642-700737 +

54.19

ACGTACATCACTAAGGTAAGTGACTATGCCGGG-ATTGTGGTTATTGAACTTAGCGTCTCCACTCACGGCATTTCATT-CACTTGCAGTACATCACCGCCGAG
ACGTATATAACAAAGGTGAGAGG----GACGAGGTCTATAGCTTTCGGGTT--GTGTA-ATACTTTAAATATTTTATTCCAATTTCAGTATATAACCGCCGAA

Size

Hit Count

Total Norm

scf7180000396371:147227-147255 -

15.15

ACGTACATCACTAAGGTAAGTGACTATGCCGGGATTGTGGTTATTGAACTTAGCGTCTCCACTCACGGCATTTCATTCACTTGCAGTACATCACCGCCGAG
TTATCCTTCTTTA------------------------------------------------------------------------GGTCATTCTCGAGGAG

Size

Hit Count

Total Norm

None

scf7180000396712:1961144-1961170 -

15.15

ACGTACATCACTAAGGTAAGTGACTATGCCGGGATTGTGGTTATTGAACTTAGCGTCTCCACTCACGGCATTTCATTCACTTGCAGTACATCACCGCCGAG
ACTTTTTTTA--------------------------------------------------------------------------AGCACATTGTTGCCGAA

Size

Hit Count

Total Norm

None

scf7180000396641:861467-861496 +

6.3

ACGTACATCACTAAGGTAAGTGACTATGCCGGGATTGTGGTTATTGAACTTAGCGTCTCCACTCACGGCATTTCATTCACTTGCAGTACATCACCGCCGAG
ACCGTGGTTACCAGGGCG-----------------------------------------------------------------------GTGACCAACGAA

Size

Hit Count

Total Norm

None

dp4 - 5 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

chrXL_group1a:9058690-9058790 +

78.42

ACGTACATCACTAAGGTAAGTGACTATGCCGGGATTGTGGTTATTGAACTTAGCGTCT----CCACTCACGGCATTTCATTCACTTGCAGTACATCACCGCCGAG ACGTACATCACAAAGGTAAGTGGCTATGCCGCGACG----GGATTGAACCTCTCATCTCTCACCTCTCACGGCATATCAATCACTTGCAGTACATCACCGCCGAG	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
................................................................TCTCACGGCATATCAATCACTTGCA................	25	1	52.00	4.00	28.00	19.00	1.00
................................................................TCTCACGGCATATCAATCACTTGCAG...............	26	1	41.00	9.00	19.00	12.00	1.00
................................................................TCTCACGGCATATCAATCACTT...................	22	1	26.00	4.00	1.00	20.00	1.00
................................................................TCTCACGGCATATCAATCACT....................	21	1	19.00	5.00	1.00	12.00	1.00
................................................................TCTCACGGCATATCAATCACTTGC.................	24	1	14.00	2.00	4.00	7.00	1.00
................................................................TCTCACGGCATATCAATCACTTGCAGT..............	27	1	14.00	9.00	1.00	4.00	0.00
................................................................TCTCACGGCATATCAATCACTTG..................	23	1	7.00	1.00	1.00	4.00	1.00
...............GTAAGTGGCTATGCCGCGACG----GGT..............................................................	24	1	5.00	3.00	2.00	0.00	0.00
...............GTAAGTGGCTATGCCGCGACG----GGG..............................................................	24	1	3.00	0.00	3.00	0.00	0.00
................................................................TCTCACGGCATATCGATCACTTGC.................	24	1	2.00	0.00	1.00	1.00	0.00
..................................................................TCACGGCATATCAATCACTTGCA................	23	1	2.00	0.00	2.00	0.00	0.00
...............GTAAGTGGCTATGCCGCGACG----GG...............................................................	23	1	2.00	0.00	1.00	1.00	0.00
................................................................TCTCACGGCATATCAATCACTTGCAA...............	26	1	2.00	0.00	1.00	1.00	0.00
................................................................TCTCACGGCATATCAATCACTTGCAC...............	26	1	1.00	0.00	0.00	1.00	0.00
.................AAGTGGCTATGCCGCGACG----GGA..............................................................	22	1	1.00	0.00	1.00	0.00	0.00
................................................................TCTCACGGCATATCAATCCCTT...................	22	1	1.00	0.00	0.00	1.00	0.00
................................................................TCTCACGGCATATCAATCACTTGCC................	25	1	1.00	0.00	0.00	1.00	0.00
................................................................TCTCACGGCATACCAATCACTT...................	22	1	1.00	0.00	0.00	1.00	0.00
................................................................GCTAACGGCATATCAATCACT....................	21	1	1.00	0.00	0.00	1.00	0.00
................................................................TCTCACGGCATATCACTCACTTGCAG...............	26	1	1.00	0.00	1.00	0.00	0.00
................................................................TCCCACGGCATATCAATCACTTGCA................	25	1	1.00	0.00	1.00	0.00	0.00
................................................................TCGGACGGCATATCAATCACTT...................	22	1	1.00	0.00	0.00	1.00	0.00
...............GTAAGTGGCTATGCCGCCACC----GG...............................................................	23	1	1.00	0.00	1.00	0.00	0.00
................................................................TCTCACGGCATATCCATCACTTGCA................	25	1	1.00	0.00	1.00	0.00	0.00
.................AAGTGGCTATGCCGCGGCG----GGG..............................................................	22	1	1.00	0.00	1.00	0.00	0.00
................................................................TCTCACGGCATCTCAATCACTTGCCG...............	26	1	1.00	0.00	1.00	0.00	0.00
................................................................TCCCACGGCATATCAATCACTTGCAGT..............	27	1	1.00	0.00	0.00	1.00	0.00
................................................................TCTCACGGCATATCGATCACTTGCAG...............	26	1	1.00	0.00	0.00	1.00	0.00
....................................................................ACGGCATATCAATCACTTGCAG...............	22	1	1.00	0.00	1.00	0.00	0.00
................................................................CCTCACGGCATATCAATCACTTGCAG...............	26	1	1.00	0.00	1.00	0.00	0.00
................................................................TCTTACGGCATATCAATCACTTGCAG...............	26	1	1.00	1.00	0.00	0.00	0.00
................................................................TCTCACGGAATATCAATCACTTGCAG...............	26	1	1.00	0.00	1.00	0.00	0.00
................................................................TCTCACGGCATATCCATCACTTG..................	23	1	1.00	0.00	0.00	1.00	0.00
................................................................TCTCACGGCATATCAATCACTTGCAGTT.............	28	1	1.00	1.00	0.00	0.00	0.00
................................................................TCTCACGGCATATCTATCACTTGCAG...............	26	1	1.00	0.00	1.00	0.00	0.00
................................................................TCACACGGCATATCAATCACTTGCAG...............	26	1	1.00	0.00	0.00	1.00	0.00
.................AAGTGGCTATGCCGCGACG----GGT..............................................................	22	1	1.00	0.00	1.00	0.00	0.00
...............GTAAGTGGCTATGCCGCGACG----GGATTG...........................................................	27	1	1.00	1.00	0.00	0.00	0.00
................................................................TCTCACGGCATATCAATCACTTGT.................	24	1	1.00	0.00	0.00	1.00	0.00
................................................................TCTCACGTCATATCAATCAGTT...................	22	1	1.00	0.00	0.00	1.00	0.00
................................................................TCTAACGGCATATCAATCACTTGCA................	25	1	1.00	0.00	1.00	0.00	0.00
.....................................................................CGGCATATCAATCACTTGC.................	19	1	1.00	0.00	0.00	0.00	1.00
................................................................TCTCACGGCATATCAATCACTTGA.................	24	1	1.00	0.00	0.00	1.00	0.00
................................................................TCTCACGGCATATCAATCGCTTGCA................	25	1	1.00	0.00	0.00	1.00	0.00

chr2:2666781-2666811 +

20.26

ACGTACATCACTAAGGTAAGTGACTATGCCGGGATTGTGGTTATTGAACTTAGCGTCTCCACTCACGGCATTTCATTCACTTGCAGTACATCACCGCCGAG GCGT-------------------------------------------------------------------TTCATT---TGGCAGGACATTGTCGAGGAA	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
..................................................................................GCAGGACATTGGCGTGGA.	18	2	0.50	0.00	0.00	0.50	0.00
..................................................................................GTAGGACATTGTGGAGGA.	18	2	0.50	0.00	0.50	0.00	0.00

Unknown_singleton_3077:2110-2140 -

20.26

ACGTACATCACTAAGGTAAGTGACTATGCCGGGATTGTGGTTATTGAACTTAGCGTCTCCACTCACGGCATTTCATTCACTTGCAGTACATCACCGCCGAG GCGT-------------------------------------------------------------------TTCATT---TGGCAGGACATTGTCGAGGAA	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
..................................................................................GCAGGACATTGGCGTGGA.	18	2	0.50	0.00	0.00	0.50	0.00
..................................................................................GTAGGACATTGTGGAGGA.	18	2	0.50	0.00	0.50	0.00	0.00

chr4_group5:770870-770894 -

15.15

Size

Hit Count

Total Norm

V112
Male body

V043
Embryo

V051
Head

M022
Male body

chrXR_group6:7555492-7555521 -

6.3

ACGTACATCACTAAGGTAAGTGACTATGCCGGGATTGTGGTTATTGAACTTAGCGTCTCCACTCACGGCATTTCATTCACTTGCAGTACATCACCGCCGAG
TCGTTTGTGGCGA-----------------------------------------------------------------------AGCAAGTGACCAACGAG

Size

Hit Count

Total Norm

V112
Male body

V043
Embryo

V051
Head

M022
Male body

None

droPer1 - 4 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

super_15:1452144-1452244 +

78.42

ACGTACATCACTAAGGTAAGTGACTATGCCGGGATTGTGGTTATTGAACTTAGCGTCT----CCACTCACGGCATTTCATTCACTTGCAGTACATCACCGCCGAG ACGTACATCACAAAGGTAAGTGGCTATGCCGCGACG----GGATTGAACCTCTCATCTCTCACCTCTCACGGCATATCAATCACTTGCAGTACATCACCGCCGAG	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
................................................................TCTCACGGCATATCAATCACTTGCAG...............	26	1	64.00	0.00	10.00	16.00	27.00	11.00
................................................................TCTCACGGCATATCAATCACTT...................	22	1	39.00	1.00	2.00	12.00	17.00	7.00
................................................................TCTCACGGCATATCAATCACTTGCA................	25	1	37.00	0.00	4.00	10.00	13.00	10.00
................................................................TCTCACGGCATATCAATCACT....................	21	1	12.00	0.00	0.00	5.00	6.00	1.00
................................................................TCTCACGGCATATCAATCACTTGCAGT..............	27	1	12.00	1.00	0.00	4.00	7.00	0.00
................................................................TCTCACGGCATATCAATCACTTG..................	23	1	10.00	0.00	0.00	1.00	9.00	0.00
...............GTAAGTGGCTATGCCGCGACG----GGT..............................................................	24	1	7.00	3.00	0.00	2.00	2.00	0.00
................................................................TCTCACGGCATATCAATC.......................	18	1	7.00	0.00	0.00	0.00	0.00	7.00
................TAAGTGGCTATGCCGCGACG----GGT..............................................................	23	1	5.00	2.00	0.00	1.00	2.00	0.00
................................................................TCTCACGGCATATCAATCACTTGCAGA..............	27	1	4.00	0.00	0.00	0.00	2.00	2.00
................................................................TCTCACGGCATATCAATCACTTGC.................	24	1	4.00	0.00	0.00	1.00	3.00	0.00
...............GTAAGTGGCTATGCCGCGACG----GG...............................................................	23	1	2.00	0.00	0.00	0.00	2.00	0.00
...............GTAAGTGGCTATGCCGCGACG----GGG..............................................................	24	1	2.00	0.00	0.00	1.00	1.00	0.00
................TAAGTGGCTATGCCGCGACG----GGA..............................................................	23	1	2.00	0.00	1.00	0.00	1.00	0.00
..................................................................TCTCGGCATATCAATCACTTGCAGT..............	25	1	2.00	2.00	0.00	0.00	0.00	0.00
.................................................................CTCACGGCATATCAATCACTT...................	21	1	2.00	0.00	0.00	0.00	2.00	0.00
................................................................TATCACGGCATATCAATCACTT...................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
................................................................TCTCACTGCATATCAATCACTTGCAG...............	26	1	1.00	0.00	0.00	0.00	1.00	0.00
................................................................TCTCACGGCATATCAATCACCTCCA................	25	1	1.00	0.00	0.00	0.00	1.00	0.00
................................................................TCTCACGGCATATCAATCACTTGCT................	25	1	1.00	0.00	1.00	0.00	0.00	0.00
................................................................TCTCAAGGCATATCCATCACTT...................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
................................................................TCTCACAGCATATCAATCACTTGCAG...............	26	1	1.00	0.00	0.00	0.00	1.00	0.00
................................................................TCTCACGGCATATCAGTCACTTGCT................	25	1	1.00	0.00	0.00	0.00	1.00	0.00
................................................................TCTCACGGAATATCAATCACTT...................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
................................................................CCTCACGGCATATCAATCACTTGCAG...............	26	1	1.00	0.00	0.00	0.00	1.00	0.00
................................................................TCTCACGGCATATCACTCACTT...................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
................................................................TCTCACGGCATATCAATCACTTCC.................	24	1	1.00	0.00	0.00	0.00	1.00	0.00
...............GTAAGTGGCTATGCCCCGACG----GGT..............................................................	24	1	1.00	0.00	0.00	0.00	1.00	0.00
...............................................................CTCTCACCGCATATCAATCACTT...................	23	1	1.00	0.00	0.00	0.00	1.00	0.00
...............GTAAGTGGCTATGTCGCGACG----GGT..............................................................	24	1	1.00	0.00	0.00	0.00	1.00	0.00
................................................................TCTCACGTCATATCAATCACTTGCA................	25	1	1.00	0.00	0.00	1.00	0.00	0.00
................................................................TCTCACGGCTTATCAATCACTTGCAG...............	26	1	1.00	0.00	0.00	0.00	1.00	0.00
..................................................................TCACGGCATATCAATCACTT...................	20	1	1.00	0.00	0.00	0.00	1.00	0.00
................................................................TCTCACGGCATATCAATGACTT...................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
................................................................TCTCACGGCATATCAATCACTTGCAC...............	26	1	1.00	0.00	0.00	0.00	1.00	0.00
................................................................TCTCACGGCAGATCAATCACTT...................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
................................................................TCTCACGGCATATCATTCACTTGT.................	24	1	1.00	0.00	0.00	0.00	1.00	0.00
..................................................................TCACGGCATATCAATCACTTGCAG...............	24	1	1.00	0.00	0.00	0.00	1.00	0.00
................................................................TCGCACGGCATATCAAGCACT....................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
................................................................TCTCACGGCATATCAATCACTTGCAT...............	26	1	1.00	0.00	0.00	0.00	1.00	0.00
................................................................TCGCACGGCATATAAATCACTT...................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
..................................................................ACACGGCATATCAATCACTTGCAGA..............	25	1	1.00	0.00	0.00	0.00	1.00	0.00
................................................................TCTCACGGCATATCAATCTCTT...................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
................................................................TCTCACGGCATATCAATCACTTGCCG...............	26	1	1.00	0.00	0.00	0.00	1.00	0.00
...............GTAAGTGGCTATGCCCCGACG----GG...............................................................	23	1	1.00	0.00	0.00	0.00	1.00	0.00
................................................................GCTCACTGCATATCAATCACTTGCAG...............	26	1	1.00	0.00	0.00	0.00	1.00	0.00
................................................................TCGCACGGCATATCAATCACT....................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
................................................................TCTCACGGCATATCAATCACTTTCAG...............	26	1	1.00	0.00	0.00	1.00	0.00	0.00
................................................................TCGCACGGCATATCAATCACTT...................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
................................................................TCTCACGGCATATCATTCACTTGCAG...............	26	1	1.00	0.00	0.00	0.00	1.00	0.00
................................................................TCTCACGGCATATCAATCACTTGA.................	24	1	1.00	0.00	0.00	1.00	0.00	0.00

super_7:1704134-1704164 +

20.26

ACGTACATCACTAAGGTAAGTGACTATGCCGGGATTGTGGTTATTGAACTTAGCGTCTCCACTCACGGCATTTCATTCACTTGCAGTACATCACCGCCGAG
GCGT-------------------------------------------------------------------TTCATT---TGGCAGGACATTGTCGAGGAA

Size

Hit Count

Total Norm

V111
Male body

V042
Embryo

V050
Head

V057
Head

M021
Embryo

super_7:1686266-1686296 -

19.34

ACGTACATCACTAAGGTAAGTGACTATGCCGGGATTGTGGTTATTGAACTTAGCGTCTCCACTCACGGCATTTCATTCACTTGCAGTACATCACCGCCGAG GCGT-------------------------------------------------------------------TTCATT---TGGAAGGACATTGTCGAGGAA	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
..................................................................................GAAGGACATTGCCAAGGA.	18	1	1.00	0.00	0.00	0.00	0.00	1.00
..................................................................................GAAGGACATGGTCGAGAA.	18	1	1.00	0.00	0.00	0.00	0.00	1.00

super_5:5176746-5176770 -

15.15

Size

Hit Count

Total Norm

V111
Male body

V042
Embryo

V050
Head

V057
Head

M021
Embryo

droWil1 - 4 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scaffold_180708:10817645-10817740 +

40.88

ACGTACATCACTAAGGTAAGTGACTATGCCGGGATTGTGGTTATTGAACTTAGCGTCTCCACTCACGGCATTTCATTCACTTGCAG-TACATCACCGCCGAG TTGCCCATAGTTTTCCTGTTAGCCTATGTG------GTGCCTAGCTATTTCATGGTCCGCACTATGTGCGATGAGCTTGATCGTAGCTTCATGAAGACCCTC	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
.........................................CAGCTATTTCATGGACCGC..........................................	19	1	1.00	0.00	0.00	0.00	1.00
............................................................ACTATGTGCGAxGAGATTG.......................	18	1	1.00	0.00	1.00	0.00	0.00

scaffold_180699:2185446-2185539 +

35.03

A--CGTACATCACTAAGGTAAGTGACTATGCCGGGATTGTGGTTATTGAACTTAGCGTCTCCACTCACGGCA-------------TTTCATTCACTTGCAGTACATCACCGCCG----AG GATCGTCTAT--------------------------TTGTGGTTATTAAATT-GTTACTCCCAGTCGGAGTAATGTTCTCATATTCCTTCTCCAGCTATAGTATGGCCTCATCGATCACG	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
.................................................................................................AAAGTATGGCCTxATCGAT....	18	1	1.00	0.00	1.00	0.00	0.00
.........T--------------------------TTGTGGxAATTAAATT-GTT................................................................	19	1	1.00	0.00	1.00	0.00	0.00

scaffold_180702:164779-164809 -

22.22

Size

Hit Count

Total Norm

V117
Male body

V118
Embryo

V119
Head

M020
Head

scaffold_180702:165380-165400 -

17.17

ACGTACATCACTAAGGTAAGTGACTATGCCGGGATTGTGGTTATTGAACTTAGCGTCTCCACTCACGGCATTTCATTCACTTGCAGTACATCACCGCCGAG
ACTTACATTACCAAGGTGAGT--------------------------------------------------------------------------------

Size

Hit Count

Total Norm

V117
Male body

V118
Embryo

V119
Head

M020
Head

None

droVir3 - 3 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scaffold_12970:7928311-7928357 -

32.32

ACGTACATCACTAAGGTAAGTGACTATGCCGGGATTGTGGTTATTGAACTTAGCGTCTCCACTCACGGCATTTCAT--TCACTTGCAGTACATCACCGCCGAG
--------------------------------------------------------CTCTTCTCACGACATCCCTTAATCCCTTGCAGTACGTTGCCAACGAA

Size

Hit Count

Total Norm

V116
Male body

V053
Unknown

V047
Embryo

M027
Male body

M028
Head

scaffold_12970:7928786-7928812 -

19.19

ACGTACATCACTAAGGTAAGTGACTATGCCGGGATTGTGGTTATTGAACTTAGCGTCTCCACTCACGGCATTTCATTCACTTGCAGTACATCACCGCCGAG
ACGTGCATTACCAAGGTAAGCAATCGT--------------------------------------------------------------------------

Size

Hit Count

Total Norm

V116
Male body

V053
Unknown

V047
Embryo

M027
Male body

M028
Head

scaffold_12875:3325258-3325278 -

13.13

Size

Hit Count

Total Norm

V116
Male body

V053
Unknown

V047
Embryo

M027
Male body

M028
Head

None

droMoj3 - 3 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scaffold_6482:1598771-1598842 +

38.5

ACGTACATCACTAAGGTAAGTGACTATGCCGGGATTGTGGTTATTGAACTTAGCGTCTCCACTCACGGCATTTCATTCACTTGCAGTACATCACCGCCGAG
----------------TAATTGGCTCAGCTGCTATTATAATAATACAATTTTAAT-------------TATTTCGTCGCCTTACAGTACATCTCCAAGGAG

Size

Hit Count

Total Norm

V110
Male body

V056
Unknown

V049
Head

V041
Embryo

scaffold_6482:1598170-1598194 +

19.19

ACGTACATCACTAAGGTAAGTGACTATGCCGGGATTGTGGTTATTGAACTTAGCGTCTCCACTCACGGCATTTCATTCACTTGCAGTACATCACCGCCGAG
ACATGCATAACCAGGGTAAGTAACT----------------------------------------------------------------------------

Size

Hit Count

Total Norm

V110
Male body

V056
Unknown

V049
Head

V041
Embryo

scaffold_6496:21818246-21818270 +

15.15

Size

Hit Count

Total Norm

V110
Male body

V056
Unknown

V049
Head

V041
Embryo

droGri2 - 2 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scaffold_15203:11132616-11132716 +

62.29

ACGTACATCACTAAGGTAAGTGACTATGCCGGGATTGTGGTTA---TTGAACTTAGCGTCTCCACTC--ACGGC-ATTTCATTCACTTGCAGTACATCACCGCCGAG ACCTACATTACTAAGGTATGT------TCGATGATTTTGGTTTTTTTTGGCTTTACTTTCACCGTTTACACGACAATTTCATCCTTTTGCAGTACGTGACCAGTGAG	Size	Hit Count	Total Norm	V109 Male body
....................T------TCAATGATTTTTGTTTTT..............................................................	19	2	0.50	0.50
......ATTACTCAGGTATGA------TCGA............................................................................	19	1	1.00	1.00

scaffold_15112:2819905-2819963 +

32.02

ACGTACATCACTAAGGTAAGTGACTATGCCGGGATTGTGGTTATTGAACTTAGCGTCTCCACTCACGGCATTTCATTCACTTGCAGTACATCACCGCCGAG
TT-----------------------------------TGATAGTAGCACTTACCCATCTTTATTTCGACATTT-------TCACAGCAAATTGTCGTGGAG

Size

Hit Count

Total Norm

V109
Male body

Generated: 04/20/2012 at 05:24:38 EDT