dme-mir-219- Best orthologs

dme-mir-219	chr3L:17308106-17308205 +	Known_mirbase
[View on miRBase]	[View on UCSC Genome Browser {Cornell Mirror}]	intergenic

Legend:

   mature strand at position 17308124-17308144
   star strand at position 17308164-17308185
   mutations
   read mismatches

20-way Fast Statistical Aligner (FSA) re-alignment

Visually pleasing best hits from LASTZ and MAF

Species	Coordinate	Source	Confidence	Alignment
dm3	chr3L:17308091-17308220 +		1	AAATAAATA-TTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCGGCAACCAAA-T-CA
droSim1	chr3L:16646167-16646296 +	LASTZ	1	AAATAAATA-TTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCGGCAACCAAA-T-CA
droSec1	super_0:9359464-9359593 +	LASTZ	1	AAATAAATA-TTTGGTTAATTCAATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCGGCAACCAAA-T-CA
droYak2	chr3L:16762572-16762701 -	LASTZ	1	AAATAAATA-TTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCGGCAACCAAA-T-CA
droEre2	scaffold_4784:16541302-16541431 -	LASTZ	1	AAATAAATA-TTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCGGCAACCAAA-T-CA
droEug1	scf7180000409711:25996-26125 -	LASTZ	4	AAATAAATA-TTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCGGCAGCCAAA-T-CA
droBia1	scf7180000302428:6673843-6673972 +	LASTZ	4	AAATAAATA-TTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATACTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCGGCAACCAAA-T-CG
droTak1	scf7180000415815:374397-374526 -	LASTZ	4	ATATAAATA-TTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATACTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCAACAACCAAA-T-CT
droEle1	scf7180000490993:219049-219178 +	LASTZ	4	AAATAAATA-TTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCAGCAACCAAT-T-CA
droRho1	scf7180000780124:81260-81389 +	LASTZ	4	AAATATATA-TTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCAGCAACCAAA-T-CA
droFic1	scf7180000454107:825208-825337 +	LASTZ	4	AAACAAATA-TTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-CCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCAACAACCAAG-T-CA
droKik1	scf7180000302474:640179-640299 +	LASTZ	4	A------TA-CTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGAT-T-CCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACGACTCGGCAACCAAG-----
droAna3	scaffold_13337:8265335-8265463 +	LASTZ	1	CAAAA--TATTTTGGTTAATTCAATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGAATT-CAAATACTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATACGAATACAACGAAGAGAACCAT-T-TC
droBip1	scf7180000396541:409877-410006 +	LASTZ	4	CAAAATATT-TTTGGTTAATTCAATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGAATT-CAAATACTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATACGAATACAACAAAGAAAACCAT-T-TA
dp4	chrXR_group6:9338098-9338227 -	LASTZ	1	ATCAAAATA-TTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-CCAATACTCAAGGGTTGTGACTGGACATCGCGGCTCGAAATAAGAATACAACCCAGCAACCAAA-A-TC
droPer1	super_35:387455-387584 +	LASTZ	1	ATCAAAATA-TTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-CCAATACTCAAGGGTTGTGACTGGACATCGCGGCTCGAAATAAGAATACAACCCATCAACCAAA-A-TC
droWil1	scaffold_180955:2086476-2086593 +	LASTZ	1	AA---AATA-TTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATTT-CAAATACTCAAGGGTTGCATCTGGGCATCGCGGCTCGAAATAAGAATACA---------CCCAA-T-AA
droVir3	scaffold_13049:5991414-5991542 -	LASTZ	1	GTATAAATA-TTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATTT-CAAATACTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATGAGAATCCAACCCA-CAACCAAA-C-AA
droMoj3	scaffold_6680:4316890-4317021 -	LASTZ	1	AAACATATA-TTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATTTTTAAATACTCAAGGGTTGCATCTGGGCATCGCGGCTCGAAATGAGAATCCAACACAAAG-CCAAAATATA
droGri2	scaffold_15110:13121815-13121944 +	LASTZ	1	TAACAAACA-TTTGGTGAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATTT-CAAAAACTCAAGGGTTGCATCTGGGCATCGCGGCTCGAAATGAGAATACAACACAAAAATCAAA-A-CA

Legend

0- The ortholog is absent. A better synthenic sequence candidate could not be found.
1- Reads w/ good pileup on mature and star strand & folds into hairpin structure.
2- Reads w/ good pileup on mature and star strand BUT does not fold into hairpin structure.
3- Sporadic reads & folds into a hairpin structure.
4- No reads but folds into a hairpin structure.
5- Ortholog is confident but miRNA appears absent (no reads and does not fold into a hairpin)

Re-alignment after removal of non-confident orthologs

Species	Alignment
dm3	AAATAAATA-TTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCGGCAACCAAA-T-CA
droSim1	AAATAAATA-TTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCGGCAACCAAA-T-CA
droSec1	AAATAAATA-TTTGGTTAATTCAATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCGGCAACCAAA-T-CA
droYak2	AAATAAATA-TTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCGGCAACCAAA-T-CA
droEre2	AAATAAATA-TTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCGGCAACCAAA-T-CA
droEug1	AAATAAATA-TTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCGGCAGCCAAA-T-CA
droBia1	AAATAAATA-TTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATACTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCGGCAACCAAA-T-CG
droTak1	ATATAAATA-TTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATACTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCAACAACCAAA-T-CT
droEle1	AAATAAATA-TTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCAGCAACCAAT-T-CA
droRho1	AAATATATA-TTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCAGCAACCAAA-T-CA
droFic1	AAACAAATA-TTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-CCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCAACAACCAAG-T-CA
droKik1	A------TA-CTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGAT-T-CCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACGACTCGGCAACCAAG-----
droAna3	CAAAA--TATTTTGGTTAATTCAATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGAATT-CAAATACTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATACGAATACAACGAAGAGAACCAT-T-TC
droBip1	CAAAATATT-TTTGGTTAATTCAATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGAATT-CAAATACTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATACGAATACAACAAAGAAAACCAT-T-TA
dp4	ATCAAAATA-TTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-CCAATACTCAAGGGTTGTGACTGGACATCGCGGCTCGAAATAAGAATACAACCCAGCAACCAAA-A-TC
droPer1	ATCAAAATA-TTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-CCAATACTCAAGGGTTGTGACTGGACATCGCGGCTCGAAATAAGAATACAACCCATCAACCAAA-A-TC
droWil1	AA---AATA-TTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATTT-CAAATACTCAAGGGTTGCATCTGGGCATCGCGGCTCGAAATAAGAATACA---------CCCAA-T-AA
droVir3	GTATAAATA-TTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATTT-CAAATACTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATGAGAATCCAACCCA-CAACCAAA-C-AA
droMoj3	AAACATATA-TTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATTTTTAAATACTCAAGGGTTGCATCTGGGCATCGCGGCTCGAAATGAGAATCCAACACAAAG-CCAAAATATA
droGri2	TAACAAACA-TTTGGTGAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATTT-CAAAAACTCAAGGGTTGCATCTGGGCATCGCGGCTCGAAATGAGAATACAACACAAAAATCAAA-A-CA

20-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droEug1	droBia1	droTak1	droEle1	droRho1	droFic1	droKik1	droAna3	droBip1	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image

Small RNA-seq read pileup

Species

Alignment

droSim1

AAATAAATA-TTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCGGCAACCAAA-T-CA	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
..................................TGATTGTCCAAACGCAATTC................................................................................	20	1	1042.00	0.00	1010.00	29.00	3.00
..................................TGATTGTCCAAACGCAATTCT...............................................................................	21	1	311.00	0.00	299.00	12.00	0.00
..................................TGATTGTCCAAACGCAATTCTTG.............................................................................	23	1	143.00	2.00	120.00	4.00	17.00
...........................................................................AGGGTTGCGACTGGGCATCGCG.....................................	22	1	76.00	28.00	23.00	0.00	25.00
..................................TTATTGTCCAAACGCAATTCTTG.............................................................................	23	1	23.00	0.00	19.00	2.00	2.00
..................................TGATTGTCCAAACGCAATTCTT..............................................................................	22	1	23.00	0.00	23.00	0.00	0.00
..................................TGATTGTCCAAACGCAATT.................................................................................	19	1	22.00	0.00	22.00	0.00	0.00
.....................................TTGTCCAAACGCAATTCTTG.............................................................................	20	1	19.00	0.00	17.00	1.00	1.00
...................................TATTGTCCAAACGCAATTCTTG.............................................................................	22	1	18.00	0.00	16.00	2.00	0.00
..................................TGATTGTCCAAACTCAATTCT...............................................................................	21	1	17.00	0.00	17.00	0.00	0.00
...........................................................................AGGGTTGCGACTGGGCATCGC......................................	21	1	15.00	1.00	9.00	0.00	5.00
....................................ATTGTCCAAACGCAATTCTTG.............................................................................	21	1	12.00	0.00	11.00	1.00	0.00
..................................TGATTGTCCAAACGCAAT..................................................................................	18	1	8.00	0.00	8.00	0.00	0.00
...........................................................................AGGGTTGCGACTGGGCATC........................................	19	1	7.00	0.00	5.00	0.00	2.00
.......................................GTCCAAACGCAATTCTTG.............................................................................	18	1	6.00	0.00	5.00	0.00	1.00
...........................................................................AGGGTTGCGACTGGGCATCGCGA....................................	23	1	5.00	0.00	5.00	0.00	0.00
..................................TGATTTTCCAAACGCAATTCTTG.............................................................................	23	1	5.00	0.00	5.00	0.00	0.00
..........................................................................AAGGGTTGCGACTGGGCATCGC......................................	22	1	4.00	0.00	3.00	0.00	1.00
..................................TGATTGTCCAAACTCAATTC................................................................................	20	1	4.00	0.00	4.00	0.00	0.00
..................................TTATTGTCCAAACGCAATTC................................................................................	20	1	4.00	0.00	4.00	0.00	0.00
......................................TGTCCAAACGCAATTCTTG.............................................................................	19	1	3.00	0.00	3.00	0.00	0.00
..................................TGATTGTCCAGACGCAATTCTTG.............................................................................	23	1	3.00	0.00	3.00	0.00	0.00
...........................................................................AGGGTTGCGACTGGGCATCG.......................................	20	1	2.00	0.00	2.00	0.00	0.00
..................................TGATTGTCCAAACCCAATTC................................................................................	20	1	2.00	0.00	2.00	0.00	0.00
..................................TGATTGTCCAAACTCAATTCTT..............................................................................	22	1	2.00	0.00	2.00	0.00	0.00
..................................TGATTGTCCGGACGCAATTCTTG.............................................................................	23	1	2.00	0.00	2.00	0.00	0.00
..................................TGATTGTCCAGACGCAATTCT...............................................................................	21	1	2.00	0.00	2.00	0.00	0.00
..................................TGATxxTCCAAACGCAATTCTTG.............................................................................	21	1	2.00	0.00	2.00	0.00	0.00
..................................TGATTGTCCAGACGCAATTC................................................................................	20	1	2.00	0.00	2.00	0.00	0.00
..................................TGATTCTCCAAACGCAATTCTTG.............................................................................	23	1	2.00	0.00	2.00	0.00	0.00
..................................TGATTGTCCAAACGCAATTCG...............................................................................	21	1	2.00	0.00	2.00	0.00	0.00
..................................TTATTGTCCAAACGCAATTCT...............................................................................	21	1	2.00	0.00	2.00	0.00	0.00
..................................TGATTGTCCAAACGCAATTCC...............................................................................	21	1	2.00	0.00	2.00	0.00	0.00
..................................TGATTGTCCAAACGCxATTCT...............................................................................	20	1	2.00	0.00	2.00	0.00	0.00
..................................TCATTGTCCAAACGCAATTCTTG.............................................................................	23	1	2.00	0.00	2.00	0.00	0.00
..................................TGATTGCCCAAACGCAATTC................................................................................	20	1	2.00	0.00	2.00	0.00	0.00
..................................TTATTGTCCAAACGCAATTCTT..............................................................................	22	1	2.00	0.00	2.00	0.00	0.00
..................................TGATTGTCCAAACGTAATTCT...............................................................................	21	1	1.00	0.00	1.00	0.00	0.00
..................................TGATCGTCCAAACGCAATTCTTG.............................................................................	23	1	1.00	0.00	1.00	0.00	0.00
..................................TGATCGTCCAAACGCAATTC................................................................................	20	1	1.00	0.00	1.00	0.00	0.00
...................................TATTGTCCAAACGCAATTCT...............................................................................	20	1	1.00	0.00	1.00	0.00	0.00
..................................TGATTGCCCAAACGCAATTCT...............................................................................	21	1	1.00	0.00	1.00	0.00	0.00
..................................TGATTGTCCAAACGCGATTC................................................................................	20	1	1.00	0.00	1.00	0.00	0.00
....................................ATTGTCCAAACGCAATTC................................................................................	18	1	1.00	0.00	1.00	0.00	0.00
..................................TGATTGTCCxAACGCAATTC................................................................................	19	1	1.00	0.00	1.00	0.00	0.00
..................................TGATTGTCCAAACGCAATTT................................................................................	20	1	1.00	0.00	1.00	0.00	0.00
..................................TGATTGTCCAAACGAAATTCT...............................................................................	21	1	1.00	0.00	1.00	0.00	0.00
..................................TGATTGTCCGGACGCAATTCT...............................................................................	21	1	1.00	0.00	1.00	0.00	0.00
..................................TGATTGTCCAAACxCAATTCTT..............................................................................	21	1	1.00	0.00	0.00	1.00	0.00
....................................TGTGTCCAAACGCAATTCTTG.............................................................................	21	1	1.00	0.00	0.00	0.00	1.00
...........................................................................AGGGTTGCGACTGGGCATCGCGT....................................	23	1	1.00	1.00	0.00	0.00	0.00
..................................TGATTxTCCAAACGCAATTCT...............................................................................	20	1	1.00	0.00	1.00	0.00	0.00
..................................TTATTCTCCAAACGCAATTCTTG.............................................................................	23	1	1.00	0.00	1.00	0.00	0.00
..................................TGATxxTCCAAACGCAATTCT...............................................................................	19	1	1.00	0.00	1.00	0.00	0.00
..................................TGATTCTCCAGACGCAATTCTTG.............................................................................	23	1	1.00	0.00	1.00	0.00	0.00
...........................................................................AGGGTTGCGACTCGGCATCGCG.....................................	22	1	1.00	1.00	0.00	0.00	0.00
...................................TATTGTCCAAACGCAATTCTT..............................................................................	21	1	1.00	0.00	1.00	0.00	0.00
..................................TGAATGTCCAAACGCAATTC................................................................................	20	1	1.00	0.00	1.00	0.00	0.00
...........................................................................AGGGTTGCGACTGGGCATCGCGG....................................	23	1	1.00	0.00	1.00	0.00	0.00
....................................ATTGTCCAAACGCAATTCT...............................................................................	19	1	1.00	0.00	1.00	0.00	0.00
..................................TGATTGTCCAAACxAAATTCT...............................................................................	20	1	1.00	0.00	1.00	0.00	0.00
..................................TCATTGTCCAAACGCAATTCTGG.............................................................................	23	1	1.00	0.00	1.00	0.00	0.00
..................................TGATTxTCCAAACGCAATT.................................................................................	18	1	1.00	0.00	1.00	0.00	0.00
...........................................................................ATGGTTGCGACTGGGCATCGC......................................	21	1	1.00	0.00	0.00	0.00	1.00
..................................TGATTCTCCAAACGCAATTCT...............................................................................	21	1	1.00	0.00	1.00	0.00	0.00
..................................TGACTGTCCAAACGCAATTCTTG.............................................................................	23	1	1.00	0.00	1.00	0.00	0.00
....................................TCTGTCCAAACGCAATTCTTG.............................................................................	21	1	1.00	0.00	1.00	0.00	0.00
..................................TGATTGTCCAAACGCATTCC................................................................................	20	1	1.00	0.00	1.00	0.00	0.00
...........................................................................AGGGTTGCGACTGGGCATCGCGC....................................	23	1	1.00	0.00	1.00	0.00	0.00
..................................TCATTGTCCAAACTCAATTC................................................................................	20	1	1.00	0.00	1.00	0.00	0.00
..................................TGATTGTCCAAACGCATTTCTT..............................................................................	22	1	1.00	0.00	1.00	0.00	0.00
..................................TGATTATCCAAACGCAATTC................................................................................	20	1	1.00	0.00	1.00	0.00	0.00
............................................................ATAT-TAAATATTCAAGGC.......................................................	18	1	1.00	0.00	0.00	0.00	1.00
..................................TGATTGTCCAAACCCAATTCT...............................................................................	21	1	1.00	0.00	1.00	0.00	0.00
...........................................................................AGGGGTGCGACTGGGCATCGC......................................	21	1	1.00	0.00	0.00	0.00	1.00
..................................TGATTGTCCAAACGCxATTCTT..............................................................................	21	1	1.00	0.00	1.00	0.00	0.00
..................................TGATTGTCCAAACxCAATTCTGG.............................................................................	22	1	1.00	0.00	1.00	0.00	0.00
..................................TGATTTTCCAAACGCAATTCT...............................................................................	21	1	1.00	0.00	1.00	0.00	0.00
..................................TGATTGTCCAAATGCAATTC................................................................................	20	1	1.00	0.00	1.00	0.00	0.00
...........................................................................AGGGTTGCGGCTGGGCATCGCG.....................................	22	1	1.00	1.00	0.00	0.00	0.00
..................................TGATTGTCCAAACTCAATT.................................................................................	19	1	1.00	0.00	1.00	0.00	0.00
...................................TATTGTCCAAACTCAATTCT...............................................................................	20	1	1.00	0.00	1.00	0.00	0.00
..................................TGATTTTCCAAACGCAATTCTT..............................................................................	22	1	1.00	0.00	1.00	0.00	0.00
...........................................................................AGGGTTGGGACTGGGCATCGCG.....................................	22	1	1.00	1.00	0.00	0.00	0.00
..................................TGATTGTCCAAACxCAATTCT...............................................................................	20	1	1.00	0.00	1.00	0.00	0.00
..................................TGATTGTCCAAACGTAATTCTT..............................................................................	22	1	1.00	0.00	1.00	0.00	0.00

droSec1

AAATAAATA-TTTGGTTAATTCAATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCGGCAACCAAA-T-CA	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
...........................................................................AGGGTTGCGACTGGGCATCGCG.....................................	22	1	130.00	15.00	72.00	43.00
..................................TGATTGTCCAAACGCAATTCT...............................................................................	21	1	31.00	3.00	0.00	28.00
..................................TGATTGTCCAAACGCAATTCTTG.............................................................................	23	1	27.00	0.00	4.00	23.00
......ATx-TTGGGTTAAATCAATT............................................................................................................	18	1	24.00	0.00	24.00	0.00
..................................TGATTGTCCAAACGCAATTCTT..............................................................................	22	1	15.00	3.00	0.00	12.00
..........................................................................AAGGGTTGCGACTGGGCATCGC......................................	22	1	14.00	0.00	12.00	2.00
..................................TGATTGTCCAAACGCAATT.................................................................................	19	1	10.00	0.00	0.00	10.00
...........................................................................AGGGTTGCGACTGGGCATCGCGT....................................	23	1	6.00	0.00	5.00	1.00
..................................TGATTGTCCAAACGCAATTC................................................................................	20	1	4.00	0.00	0.00	4.00
..................................TGATTGTCCAAACGTAATTCTTG.............................................................................	23	1	3.00	0.00	3.00	0.00
...........................................................................AGGGTTGCGACTGGGCATCGCGA....................................	23	1	3.00	0.00	1.00	2.00
...........................................................................AGGGTTGCGACTGGGCATCGC......................................	21	1	3.00	0.00	1.00	2.00
.....................................TTGTCCAAACGCAATTCTTG.............................................................................	20	1	3.00	0.00	0.00	3.00
..................................TTATTGTCCAAACGCAATTCTTG.............................................................................	23	1	2.00	0.00	0.00	2.00
..................................TGATTTTCCAAACGCAATTCT...............................................................................	21	1	2.00	0.00	0.00	2.00
..................................TGATTGTCCAAACGCAATTCTTGT............................................................................	24	1	2.00	0.00	0.00	2.00
...........................................................................CGGGTTGCGACTGGGCATCGCG.....................................	22	1	2.00	0.00	1.00	1.00
...........................................................................AGGGTTGCGACTGGGCATTGCGT....................................	23	1	1.00	0.00	1.00	0.00
..................................TGATAGTCCAAACGCAATTCT...............................................................................	21	1	1.00	0.00	0.00	1.00
..................................TGATTCTCCAAACGCAATTCTTG.............................................................................	23	1	1.00	0.00	0.00	1.00
.......TA-TTTGGTTAAACCAATT............................................................................................................	18	1	1.00	0.00	1.00	0.00
...........................................................................AGGCTTGCGACTGGGCATCGCG.....................................	22	1	1.00	0.00	1.00	0.00
...................................TATTGTCCAAACGCAATTCTTG.............................................................................	22	1	1.00	0.00	1.00	0.00
...........................................................................AGGGTTGCCACTGGGCATCGCG.....................................	22	1	1.00	0.00	1.00	0.00
..................................TGATTGTCCGGACGCAATTCTT..............................................................................	22	1	1.00	0.00	0.00	1.00
..................................TGATTGTCCGAACGCAATTCT...............................................................................	21	1	1.00	0.00	0.00	1.00
...........................................................................AGGGTTGCGACTGGGCATGGCG.....................................	22	1	1.00	1.00	0.00	0.00
..................................GGATTGTCCAAACGCAATTCTT..............................................................................	22	1	1.00	0.00	0.00	1.00
...........................................................................AGGTTTGCGACTGGGCATCGCG.....................................	22	1	1.00	0.00	1.00	0.00
......................................TGTCCAAACGCAATTCTTG.............................................................................	19	1	1.00	0.00	0.00	1.00
...........................................................................AGGGTTGCGGCTGGGCATCGCG.....................................	22	1	1.00	0.00	1.00	0.00
..................................TGATTTTCCAAACGCAATTCTT..............................................................................	22	1	1.00	0.00	0.00	1.00
..................................TGATTGTCCAGACGCAATTCTTGT............................................................................	24	1	1.00	0.00	0.00	1.00
..................................TCATTGTCCAAACGCAATTCTTG.............................................................................	23	1	1.00	0.00	0.00	1.00
.....................................TTGTCCAAACGCAATTCTTGA............................................................................	21	1	1.00	0.00	0.00	1.00
...........................................................................ATGGTTGCGACTGGGCATCGCG.....................................	22	1	1.00	0.00	1.00	0.00
...........................................................................AGGGTTGCGACTCGGCATCGCG.....................................	22	1	1.00	0.00	1.00	0.00
..................................TGATAGTCCAAACGCAATTCTTG.............................................................................	23	1	1.00	0.00	0.00	1.00
..................................TGATTGTCAAAACGCAATTCTTGT............................................................................	24	1	1.00	0.00	0.00	1.00
....................................ATTGTCCAAACGCAATTCT...............................................................................	19	1	1.00	0.00	0.00	1.00
.............................................................................GGTTGCGACTGGGCATCGCG.....................................	20	1	1.00	0.00	0.00	1.00
...........................................................................AGGGTTGCGACTGGGCATCGCT.....................................	22	1	1.00	0.00	0.00	1.00
..................................TCATTGTCCAAACGCAATTCTT..............................................................................	22	1	1.00	0.00	0.00	1.00

droYak2

AAATAAATA-TTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCGGCAACCAAA-T-CA	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
...........................................................................AGGGTTGCGACTGGGCATCGCG.....................................	22	1	92.00	21.00	16.00	5.00	36.00	14.00
..................................TGATTGTCCAAACGCAATTCTTG.............................................................................	23	1	41.00	2.00	7.00	5.00	16.00	11.00
..................................TGATTGTCCAAACGCAATTCT...............................................................................	21	1	30.00	0.00	7.00	0.00	8.00	15.00
..................................TGATTGTCCAAACGCAATTC................................................................................	20	1	29.00	0.00	2.00	2.00	3.00	22.00
..................................TGATTGTCCAAACGCAATTCTT..............................................................................	22	1	9.00	0.00	4.00	0.00	4.00	1.00
...........................................................................AGGGTTGCGACTGGGCATCGC......................................	21	1	8.00	2.00	0.00	0.00	0.00	6.00
..................................TGATTGTCCAAACGCAATTCTTGT............................................................................	24	1	6.00	0.00	1.00	1.00	4.00	0.00
..........................................................................AAGGGTTGCGACTGGGCATCGC......................................	22	1	5.00	2.00	0.00	0.00	0.00	3.00
...........................................................................AGGGTTGCGACTGGGCATC........................................	19	1	5.00	0.00	0.00	0.00	0.00	5.00
...........................................................................AGGGTTGCGACTGGGCATCGCGT....................................	23	1	2.00	1.00	0.00	0.00	1.00	0.00
..................................TGATTGTCCAAACGCCATTCTTG.............................................................................	23	1	2.00	0.00	0.00	0.00	2.00	0.00
..................................TGATTGTCCAAACGCAATTCC...............................................................................	21	1	2.00	0.00	0.00	0.00	0.00	2.00
..................................TGATTGTCCAAACGCAATT.................................................................................	19	1	2.00	0.00	0.00	0.00	2.00	0.00
...........................................................................AGGGTTGCGACTGGGCATCG.......................................	20	1	1.00	0.00	0.00	0.00	0.00	1.00
.......................................GTCCAAACGCAATTCTTG.............................................................................	18	1	1.00	0.00	0.00	0.00	0.00	1.00
...........................................................................AGGGTTGCGACTGGGAATCGCT.....................................	22	1	1.00	1.00	0.00	0.00	0.00	0.00
...................................GATTGTCCAAACGCAATTCTTGT............................................................................	23	1	1.00	1.00	0.00	0.00	0.00	0.00
...........................................................................AGGGTTGCGAATGGGCATCGCG.....................................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
..................................TGATTGTCCAAACGCAAA..................................................................................	18	1	1.00	0.00	0.00	0.00	0.00	1.00
..................................TGATTGTCCAAACGCACTTCTTG.............................................................................	23	1	1.00	0.00	0.00	0.00	1.00	0.00
..................................TGATTGTCCAAACACAATGC................................................................................	20	1	1.00	0.00	1.00	0.00	0.00	0.00
...........................................................................AGGGGTGCGACTGGGCATCGCG.....................................	22	1	1.00	0.00	1.00	0.00	0.00	0.00
..................................TGATTGTGCAAACGCAATTCTTG.............................................................................	23	1	1.00	0.00	0.00	0.00	1.00	0.00
..................................TGATTGTCCAAACTCAATTCTT..............................................................................	22	1	1.00	0.00	0.00	0.00	0.00	1.00
..................................TGATTGTCCAAACGCAATTT................................................................................	20	1	1.00	0.00	1.00	0.00	0.00	0.00
...........................................................................AGGGTTGCGACTGGGCATCTCG.....................................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
..................................TTATTGTCCAAACGCAATTCTTG.............................................................................	23	1	1.00	0.00	0.00	0.00	0.00	1.00
...........................................................................AGGGTTGCGACTGGGCATCCCC.....................................	22	1	1.00	0.00	1.00	0.00	0.00	0.00
...........................................................................AGGGTTGCGCCTGGGCCTCGCG.....................................	22	1	1.00	1.00	0.00	0.00	0.00	0.00
..................................TGATTGTCTAAACGCAATTATTGT............................................................................	24	1	1.00	0.00	0.00	0.00	1.00	0.00
...........................................................................AGGGCTGCGACTGGGCATCGCC.....................................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
..................................TGATTGTCCAAAAGCAATTAT...............................................................................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
...........................................................................AGGGTTGCGACCGGGCATCGCG.....................................	22	1	1.00	0.00	0.00	0.00	0.00	1.00
..................................TGATTGTCCAAACACAATTCTT..............................................................................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
..............................................................................GTTGCGACTGGGCATCGCG.....................................	19	1	1.00	0.00	0.00	0.00	0.00	1.00
...........................................................................AGGGTTGCGCCTGGGCATCGCG.....................................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
...................................TATTGTCCAAACGCAATTCTTG.............................................................................	22	1	1.00	0.00	0.00	0.00	0.00	1.00
...........................................................................AGGGTTCCGACTGCGCATCGCG.....................................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
..................................TGATTGTCCAAACGCAACT.................................................................................	19	1	1.00	0.00	1.00	0.00	0.00	0.00
...........................................................................AGGGTTGCGACTGGGCATCGCGA....................................	23	1	1.00	0.00	0.00	0.00	0.00	1.00
......................................TGTCCAAACGCAATTCTCG.............................................................................	19	1	1.00	0.00	0.00	0.00	1.00	0.00
...........................................................................AGGGTTGCGACTGGGCATCGCGTT...................................	24	1	1.00	0.00	0.00	0.00	0.00	1.00
...........................................................................AGGGTTGCGACTGGGCCTCGCG.....................................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
...........................................................................ACGGTCGCGACTGGGCATCGCG.....................................	22	1	1.00	1.00	0.00	0.00	0.00	0.00
...........................................................................AGCGTTGCGACTGGGCATCGCG.....................................	22	1	1.00	0.00	0.00	0.00	0.00	1.00
...........................................................................AGGGTTGCGACTGGGCAGCGCG.....................................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
..................................TGATTGGCCAAATGCAATTCTT..............................................................................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
..................................TGATTGACCAAACGCAATGCTT..............................................................................	22	1	1.00	0.00	1.00	0.00	0.00	0.00

droEre2

AAATAAATA-TTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCGGCAACCAAA-T-CA	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
...........................................................................AGGGTTGCGACTGGGCATCGCG.....................................	22	1	178.00	11.00	22.00	0.00	145.00
..................................TGATTGTCCAAACGCAATTCTTG.............................................................................	23	1	66.00	1.00	14.00	0.00	51.00
..................................TGATTGTCCAAACGCAATTCT...............................................................................	21	1	52.00	0.00	13.00	0.00	39.00
..................................TGATTGTCCAAACGCAATTCTT..............................................................................	22	1	26.00	0.00	2.00	0.00	24.00
..................................TGATTGTCCAAACGCAATTC................................................................................	20	1	9.00	0.00	1.00	0.00	8.00
..........................................................................AAGGGTTGCGACTGGGCATCGC......................................	22	1	7.00	1.00	0.00	0.00	6.00
.....................................TTGTCCAAACGCAATTCTTG.............................................................................	20	1	6.00	0.00	0.00	0.00	6.00
...........................................................................AGGGTTGCGACTGGGCATCGC......................................	21	1	4.00	0.00	1.00	0.00	3.00
..................................TGATTGTCCAAACGCAATTCTTGT............................................................................	24	1	4.00	0.00	2.00	0.00	2.00
..................................TGATTGTCCAAACGCAATT.................................................................................	19	1	4.00	0.00	0.00	0.00	4.00
...........................................................................ATGGTTGCGACTGGGCATCGCG.....................................	22	1	4.00	1.00	0.00	0.00	3.00
..................................TTATTGTCCAAACGCAATTCTTG.............................................................................	23	1	3.00	0.00	0.00	0.00	3.00
...........................................................................AGGGTTGCGACTGGGCATCGCGT....................................	23	1	3.00	1.00	0.00	0.00	2.00
...........................................................................AGGGTTGCTACTGGGCATCGCG.....................................	22	1	3.00	0.00	0.00	0.00	3.00
....................................ATTGTCCAAACGCAATTCTTGT............................................................................	22	1	2.00	0.00	0.00	0.00	2.00
...........................................................................GGGGTTGCGACTGGGCATCGCG.....................................	22	1	2.00	0.00	0.00	0.00	2.00
...........................................................................AGGGTTGCGACTTGGCATCGCG.....................................	22	1	2.00	0.00	0.00	0.00	2.00
...........................................................................AGGGCTGCGACTGGGCATCGCG.....................................	22	1	2.00	0.00	0.00	0.00	2.00
..................................TGATTGTCCAAACGCAATTCTTCT............................................................................	24	1	1.00	0.00	0.00	0.00	1.00
...........................................................................AGGGTTGCGACTGGGCATCG.......................................	20	1	1.00	0.00	0.00	0.00	1.00
..................................TGATTGTCCAAACGCAACTCTTG.............................................................................	23	1	1.00	0.00	0.00	0.00	1.00
..................................TGATTGTCCAAACGCxATTCTTG.............................................................................	22	1	1.00	0.00	0.00	0.00	1.00
..................................TGATTGTCCAAACGCAATTCTTT.............................................................................	23	1	1.00	0.00	0.00	0.00	1.00
..................................TTATTGTCCAAACGCAATTCTTGT............................................................................	24	1	1.00	0.00	0.00	0.00	1.00
..................................TGATTGTCCAAACGCAATTCTTA.............................................................................	23	1	1.00	0.00	0.00	0.00	1.00
...........................................................................AGGGTTGCGAATGGGCATCGCG.....................................	22	1	1.00	0.00	0.00	0.00	1.00
...........................................................................AGGGTTGCGACTGGGCATCGAGT....................................	23	1	1.00	0.00	0.00	0.00	1.00
...........................................................................AGGGTTGCGACTGGGCATCTCG.....................................	22	1	1.00	0.00	1.00	0.00	0.00
...........................................................................AGGGTTGCGACTGGGCATGGCG.....................................	22	1	1.00	0.00	1.00	0.00	0.00
...........................................................................AGGGTTGCGACTGGGAATCGCG.....................................	22	1	1.00	0.00	0.00	0.00	1.00
...........................................................................AGGTTTGCGACTGGGCATCGCG.....................................	22	1	1.00	1.00	0.00	0.00	0.00
..................................TGATTGTCCAAACTCAATTCTTG.............................................................................	23	1	1.00	0.00	0.00	0.00	1.00
...........................................................................AAGGTTGCGACTGGGCATCGCG.....................................	22	1	1.00	0.00	1.00	0.00	0.00
..................................TGATTGTCCCAACGCACTTCTT..............................................................................	22	1	1.00	0.00	1.00	0.00	0.00
...........................................................................AGGGTTGCGACTGGGCATCACG.....................................	22	1	1.00	0.00	1.00	0.00	0.00
...........................................................................ATGGTTGCGACTGGGCATCGCGT....................................	23	1	1.00	0.00	1.00	0.00	0.00
..................................TGATATTCCAAACGCAATTCT...............................................................................	21	1	1.00	0.00	0.00	0.00	1.00
...........................................................................AGGGTTCCGACTGGGCATCGCG.....................................	22	1	1.00	0.00	0.00	0.00	1.00
..................................TGATTGTCCAAACGCAATGCTTG.............................................................................	23	1	1.00	0.00	1.00	0.00	0.00
...........................................................................AGGGTTGCGACTGGGCATCCCG.....................................	22	1	1.00	0.00	1.00	0.00	0.00
...........................................................................AGGGTTGCGACTGGGCATCGCT.....................................	22	1	1.00	0.00	0.00	0.00	1.00
...........................................................................AGGGTTGCGACCGGGCATCGCG.....................................	22	1	1.00	0.00	0.00	0.00	1.00
...........................................................................AGGGTTGTGACTGGGCATCGCG.....................................	22	1	1.00	0.00	0.00	0.00	1.00
...........................................................................AGGGTTGCGACTGGTCATCGCG.....................................	22	1	1.00	0.00	0.00	0.00	1.00
..........TTTGGxTAATGCGATTTTT.........................................................................................................	18	1	1.00	0.00	0.00	0.00	1.00
...........................................................................AGTGTTGCGACTGGGCATCGCG.....................................	22	1	1.00	0.00	0.00	0.00	1.00
..................................TGATTATCCAAACGCAATTCTTG.............................................................................	23	1	1.00	0.00	0.00	0.00	1.00
...........................................................................AGGGTTGCGACTGGGCATTGCG.....................................	22	1	1.00	0.00	0.00	0.00	1.00
..................................TTATTGTCCAAACGCAATTCT...............................................................................	21	1	1.00	0.00	0.00	0.00	1.00
...........................................................................AGGGTTGCGACTGGGCATCGAG.....................................	22	1	1.00	0.00	0.00	0.00	1.00
..................................TGATTGTCCAAACGCCATTCTTG.............................................................................	23	1	1.00	0.00	1.00	0.00	0.00
...........................................................................AGGGTTGCGTCTGGTCATCGCG.....................................	22	1	1.00	0.00	0.00	0.00	1.00
......................................TGTCCAAATGCAATTCTTG.............................................................................	19	1	1.00	0.00	0.00	0.00	1.00
...........................................................................AGGGTTGCGACTGTGCATCGCG.....................................	22	1	1.00	0.00	0.00	0.00	1.00
..................................TGATTCTCCAAACGCAATTCTT..............................................................................	22	1	1.00	0.00	0.00	0.00	1.00
..................................TGATxxTCCAAACGCAATTCTT..............................................................................	20	1	1.00	0.00	0.00	0.00	1.00
..................................TTATTGTCCAAACGCxATTCTTG.............................................................................	22	1	1.00	0.00	0.00	0.00	1.00
...........................................................................AGGGTTGTGACTGGGCCTCGCG.....................................	22	1	1.00	1.00	0.00	0.00	0.00
...........................................................................AGGGTTGCGACTAGGCATCGCG.....................................	22	1	1.00	0.00	0.00	0.00	1.00
..................................TGATTGTCCAAACGCxATTCT...............................................................................	20	1	1.00	0.00	0.00	0.00	1.00
...........................................................................AGGGTTGTGACTGGACATCGCG.....................................	22	1	1.00	1.00	0.00	0.00	0.00
..........................................................................AATGGTTGCGACTGGGCATCGC......................................	22	1	1.00	0.00	0.00	0.00	1.00
..................................TGCTTGTCCAAACGCAATTCTTG.............................................................................	23	1	1.00	0.00	0.00	0.00	1.00
..................................TGACTGTCCAAGCGCAATTCTT..............................................................................	22	1	1.00	0.00	1.00	0.00	0.00
..................................TGATTTTCCAAACGCAATTCTTG.............................................................................	23	1	1.00	0.00	0.00	0.00	1.00
...........................................................................AGGGTTGCGACTGGGCATCGGG.....................................	22	1	1.00	0.00	1.00	0.00	0.00
...........................................................................AGCGTTGCGACTGGGCATCGCG.....................................	22	1	1.00	0.00	0.00	0.00	1.00
...........................................................................AGGGTTGCGACTxGGCATCGCG.....................................	21	1	1.00	0.00	0.00	0.00	1.00
..................................TGATTGTCCAAACxCAATTCT...............................................................................	20	1	1.00	0.00	0.00	0.00	1.00
..................................TGATTTTCCAAACGCAATTC................................................................................	20	1	1.00	0.00	0.00	0.00	1.00
..................................TCATTGTCCAAACGAAATTCTT..............................................................................	22	1	1.00	0.00	0.00	0.00	1.00

droEug1

AAATAAATA-TTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCGGCAGCCAAA-T-CA

Size

Hit Count

Total Norm

droBia1

AAATAAATA-TTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATACTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCGGCAACCAAA-T-CG

Size

Hit Count

Total Norm

droTak1

ATATAAATA-TTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATACTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCAACAACCAAA-T-CT

Size

Hit Count

Total Norm

droEle1

AAATAAATA-TTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCAGCAACCAAT-T-CA

Size

Hit Count

Total Norm

droRho1

AAATATATA-TTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCAGCAACCAAA-T-CA

Size

Hit Count

Total Norm

droFic1

AAACAAATA-TTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-CCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCAACAACCAAG-T-CA

Size

Hit Count

Total Norm

droKik1

A------TA-CTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGAT-T-CCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACGACTCGGCAACCAAG-----

Size

Hit Count

Total Norm

droAna3

CAAAA--TATTTTGGTTAATTCAATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGAATT-CAAATACTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATACGAATACAACGAAGAGAACCAT-T-TC	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
...........................................................................AGGGTTGCGACTGGGCATCGCG.....................................	22	1	77.00	2.00	59.00	16.00	0.00
..................................TGATTGTCCAAACGCAATTCTTG.............................................................................	23	1	43.00	2.00	26.00	15.00	0.00
..................................TGATTGTCCAAACGCAATTCT...............................................................................	21	1	43.00	1.00	29.00	13.00	0.00
..................................TGATTGTCCAAACGCAATTC................................................................................	20	1	19.00	3.00	9.00	7.00	0.00
..................................TGATTGTCCAAACGCAATTCTT..............................................................................	22	1	17.00	1.00	12.00	4.00	0.00
..................................TGATTGTCCAAACGCAATTCTTGT............................................................................	24	1	10.00	0.00	6.00	4.00	0.00
..................................TGATTGTCCAAACGCAATT.................................................................................	19	1	10.00	1.00	8.00	1.00	0.00
...........................................................................AGGGTTGCGACTGGGCATCGC......................................	21	1	3.00	0.00	3.00	0.00	0.00
..........................................................................AAGGGTTGCGACTGGGCATCGC......................................	22	1	3.00	0.00	3.00	0.00	0.00
..................................TGATTGTCTAAACGCAATTCTTG.............................................................................	23	1	3.00	0.00	2.00	1.00	0.00
..................................TGATTGTCCAAACGAAATT.................................................................................	19	1	2.00	0.00	2.00	0.00	0.00
...........................................................................AGGGTTTCGACTGGGCATCGCG.....................................	22	1	2.00	0.00	2.00	0.00	0.00
...........................................................................AGGGTTGCGACTGGGCATAGCG.....................................	22	1	2.00	0.00	2.00	0.00	0.00
..................................TGATTGTCCAAACxCAATTCTTG.............................................................................	22	1	2.00	0.00	2.00	0.00	0.00
..................................TGATTTTCCAAACGCAATTCTTG.............................................................................	23	1	1.00	0.00	1.00	0.00	0.00
..................................TGATTCTCCAAACGCAATTC................................................................................	20	1	1.00	0.00	1.00	0.00	0.00
..................................TGATTGACCAAACGCAATTCT...............................................................................	21	1	1.00	0.00	0.00	1.00	0.00
..................................TGACTGTCCAAACGCAATTCT...............................................................................	21	1	1.00	0.00	1.00	0.00	0.00
.....................................................................................................AAAATACGAACACAACGAA..............	19	1	1.00	0.00	0.00	0.00	1.00
..................................TGATTGTCCAAACGCAATGCTGG.............................................................................	23	1	1.00	0.00	0.00	1.00	0.00
...........................................................................AGTGTTGCGACTGGGCATCGC......................................	21	1	1.00	0.00	1.00	0.00	0.00
..................................TGATTGCCCAAACGCAATTCT...............................................................................	21	1	1.00	0.00	0.00	1.00	0.00
...........................................................................AGGGTTGCGACTGGGCATCGAG.....................................	22	1	1.00	0.00	1.00	0.00	0.00
..................................TGATTGTCCAACCGCAATTCTT..............................................................................	22	1	1.00	0.00	0.00	1.00	0.00
...........................................................................AGGGTTGCGACTGGGCATCACG.....................................	22	1	1.00	1.00	0.00	0.00	0.00
..................................TGGTTGTCCAAACGCAAT..................................................................................	18	1	1.00	0.00	0.00	1.00	0.00
..................................AGATTGTCCAAACGCAATTCTTGT............................................................................	24	1	1.00	0.00	0.00	1.00	0.00
...........................................................................AGAGTTGCGACTGGGCATCGC......................................	21	1	1.00	0.00	0.00	1.00	0.00
...........................................................................GGGGTTGCGACTGGGCATCGCG.....................................	22	1	1.00	0.00	1.00	0.00	0.00
...................................TGTTGTCCAAACGCAATTCTTG.............................................................................	22	1	1.00	0.00	1.00	0.00	0.00
...........................................................................AGGGTTGAGACTGGGCATCGCG.....................................	22	1	1.00	0.00	1.00	0.00	0.00
..................................TGATTGTCAAAACGCAATTCTTGT............................................................................	24	1	1.00	0.00	1.00	0.00	0.00
...........................................................................CGGGTTGCGACTGGGCCTCGCG.....................................	22	1	1.00	0.00	0.00	1.00	0.00
..................................TGATTGTCCAAACGCAATTCTCG.............................................................................	23	1	1.00	0.00	0.00	1.00	0.00
..................................TGATTGTCCAAACGAAATTCT...............................................................................	21	1	1.00	0.00	1.00	0.00	0.00
...................................GATTGTCCAAACGCAATTC................................................................................	19	1	1.00	0.00	1.00	0.00	0.00
.....................................................................................CTGGGCATCGGGGTTCGA...............................	18	1	1.00	0.00	0.00	1.00	0.00
..................................TGATTGTCCAAGCGCAATTCT...............................................................................	21	1	1.00	0.00	0.00	1.00	0.00
..................................TGATTGTCCAAACGCAATTCCTG.............................................................................	23	1	1.00	0.00	1.00	0.00	0.00
..................................TGATTGTCCGAACGCAATTC................................................................................	20	1	1.00	0.00	1.00	0.00	0.00
.......................................................................................GTGCATCxCGGCTCGAA..............................	16	1	1.00	0.00	0.00	1.00	0.00
...........................................................................AGGGTTGCGACTGGGCTCCGCG.....................................	22	1	1.00	0.00	0.00	1.00	0.00
..........CTCGGTTAATTCAATTTT..........................................................................................................	18	1	1.00	0.00	0.00	0.00	1.00
..................................TGATTGTCCAAACGCAATTT................................................................................	20	1	1.00	0.00	1.00	0.00	0.00
..................................TGATTGGCCAAACGCAATTCT...............................................................................	21	1	1.00	0.00	0.00	1.00	0.00
...........................................................................AGGGATGCGACTGGGCATCGCG.....................................	22	1	1.00	0.00	1.00	0.00	0.00
...........................................................................AGTGTTGCGACTGGGCATCGCG.....................................	22	1	1.00	0.00	1.00	0.00	0.00
..................................TGATTGTCCAAACGCAATTTTTG.............................................................................	23	1	1.00	0.00	1.00	0.00	0.00

droBip1

CAAAATATT-TTTGGTTAATTCAATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGAATT-CAAATACTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATACGAATACAACAAAGAAAACCAT-T-TA

Size

Hit Count

Total Norm

dp4

ATCAAAATA-TTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-CCAATACTCAAGGGTTGTGACTGGACATCGCGGCTCGAAATAAGAATACAACCCAGCAACCAAA-A-TC	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
...........................................................................AGGGTTGTGACTGGACATCGCG.....................................	22	1	42.00	3.00	20.00	18.00	1.00
..................................TGATTGTCCAAACGCAATTCTTG.............................................................................	23	1	17.00	0.00	4.00	13.00	0.00
..................................TGATTGTCCAAACGCAATTCT...............................................................................	21	1	12.00	0.00	0.00	12.00	0.00
...........................................................................AGGGTTGTGACTGGACATCGC......................................	21	1	7.00	0.00	4.00	3.00	0.00
..................................TGATTGTCCAAACGCAATTCTT..............................................................................	22	1	7.00	0.00	0.00	7.00	0.00
..................................TGATTGTCCAAACGCAATTC................................................................................	20	1	7.00	0.00	0.00	7.00	0.00
..................................TGATTGTCCAAACGCAATTCTTGT............................................................................	24	1	4.00	0.00	0.00	4.00	0.00
..........................................................................AAGGGTTGTGACTGGACATCGC......................................	22	1	3.00	0.00	3.00	0.00	0.00
..................................TGATTGTCCAAACGCACTTCTTG.............................................................................	23	1	2.00	0.00	1.00	1.00	0.00
...........................................................................AGGGTTGTGACTGGACATCGCGT....................................	23	1	2.00	1.00	1.00	0.00	0.00
...........................................................................AGGGTTGTGACTGGACATCGTG.....................................	22	1	2.00	0.00	2.00	0.00	0.00
...........................................................................AGGGATGTGACTGGACATCGCC.....................................	22	1	1.00	0.00	0.00	1.00	0.00
...........................................................................AGGGTTGTGACTGGCCATCGCG.....................................	22	1	1.00	0.00	1.00	0.00	0.00
....................TGGATTTTTAGCTATGTT................................................................................................	18	1	1.00	0.00	0.00	1.00	0.00
...........................................................................AGGGTTGTGACTGGACATCGCC.....................................	22	1	1.00	0.00	0.00	1.00	0.00
......................................TGTCCAAACGCAATTCTTG.............................................................................	19	1	1.00	0.00	1.00	0.00	0.00
...........................................................................AGGGTTGTGACTGGACATCACG.....................................	22	1	1.00	0.00	0.00	1.00	0.00
..................................TGATTTTCCAAACGCAATTCTTG.............................................................................	23	1	1.00	1.00	0.00	0.00	0.00
..................................TAATTGTCCAAACGCAGTTCT...............................................................................	21	1	1.00	0.00	0.00	1.00	0.00
...........................................................................AGGGTTGTGACTGGACATCTCG.....................................	22	1	1.00	0.00	0.00	1.00	0.00
...........................................................................AGGGTTGTGACTGGACCTCGCG.....................................	22	1	1.00	0.00	1.00	0.00	0.00
...........................................................................AGGGTTGTGACTGGACATCG.......................................	20	1	1.00	0.00	0.00	1.00	0.00
...........................................................................AGGGTTGTGATTGGACATCGCG.....................................	22	1	1.00	0.00	1.00	0.00	0.00
..................................TGATTGTCCAAACGAAATTCTTG.............................................................................	23	1	1.00	0.00	0.00	1.00	0.00
...........................................................................AGGGTTGTGACTGGGCATCGCG.....................................	22	1	1.00	0.00	0.00	1.00	0.00

droPer1

ATCAAAATA-TTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-CCAATACTCAAGGGTTGTGACTGGACATCGCGGCTCGAAATAAGAATACAACCCATCAACCAAA-A-TC	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
...........................................................................AGGGTTGTGACTGGACATCGCG.....................................	22	1	61.00	3.00	4.00	14.00	24.00	16.00
..................................TGATTGTCCAAACGCAATTCTTG.............................................................................	23	1	43.00	0.00	1.00	20.00	20.00	2.00
..................................TGATTGTCCAAACGCAATTCT...............................................................................	21	1	31.00	0.00	0.00	9.00	22.00	0.00
..................................TGATTGTCCAAACGCAATTCTT..............................................................................	22	1	18.00	0.00	0.00	4.00	14.00	0.00
..................................TGATTGTCCAAACGCAATTC................................................................................	20	1	8.00	0.00	0.00	2.00	6.00	0.00
...........................................................................AGGGTTGTGACTGGACATCGC......................................	21	1	7.00	0.00	1.00	3.00	3.00	0.00
..................................TGATTGTCCAAACGCAATTCTTGT............................................................................	24	1	6.00	0.00	0.00	1.00	5.00	0.00
..........................................................................AAGGGTTGTGACTGGACATCGC......................................	22	1	5.00	0.00	0.00	0.00	2.00	3.00
.......................................GTCCAAACGCAATTCTTG.............................................................................	18	1	3.00	0.00	0.00	0.00	0.00	3.00
..................................TGATTGTCCAAACGCAATT.................................................................................	19	1	3.00	0.00	0.00	1.00	2.00	0.00
...........................................................................AGGGCTGTGACTGGACATCGCG.....................................	22	1	2.00	0.00	0.00	0.00	2.00	0.00
......................................TGTCCAAACGCAATTCTTG.............................................................................	19	1	2.00	0.00	2.00	0.00	0.00	0.00
..................................TGATTGTCCAAACGCACTTCT...............................................................................	21	1	2.00	0.00	0.00	0.00	2.00	0.00
...........................................................................AGGGTTGTGACTGGACATC........................................	19	1	2.00	0.00	0.00	1.00	0.00	1.00
...........................................................................AGGGTTGTGACTGGACATCGCT.....................................	22	1	2.00	0.00	0.00	0.00	2.00	0.00
..................................TGATTGTCCAAACGCAGTTCTTG.............................................................................	23	1	1.00	0.00	0.00	0.00	1.00	0.00
..................................TGATTGTCTAAACGCAGTTCTTG.............................................................................	23	1	1.00	0.00	0.00	0.00	1.00	0.00
..................................TGAGTGTCCAAACGCAATTCTTG.............................................................................	23	1	1.00	0.00	0.00	0.00	1.00	0.00
..................................TGATTATCCAAACGCAATTCT...............................................................................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
..................................TGATTGTCCAAACGCCATAC................................................................................	20	1	1.00	0.00	0.00	0.00	1.00	0.00
..................................TGATTGGCCAAACGCAATTCTTG.............................................................................	23	1	1.00	0.00	0.00	0.00	1.00	0.00
..................................TGATTGTCCAAACTCAATTC................................................................................	20	1	1.00	0.00	0.00	0.00	1.00	0.00
..................................TGATTGTCCAAACGCAATTCTTT.............................................................................	23	1	1.00	0.00	0.00	1.00	0.00	0.00
..................................TGACTGTCCAAACGCAATTCTT..............................................................................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
...........................................................................AGGGTGGTGACTGGACATCGCG.....................................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
..................................TGATTGTCGAAACGCAATTC................................................................................	20	1	1.00	0.00	0.00	0.00	1.00	0.00
.....................................TTGTCCAAACGCAATTTCTG.............................................................................	20	1	1.00	0.00	1.00	0.00	0.00	0.00
..................................TGATTGTCCGAACGCAATTCT...............................................................................	21	1	1.00	1.00	0.00	0.00	0.00	0.00
..................................TGATTGTCCAAACGCAATTCTTC.............................................................................	23	1	1.00	0.00	0.00	0.00	1.00	0.00
..................................TGATTGGCCAAACGCAATTCTTGT............................................................................	24	1	1.00	0.00	0.00	0.00	1.00	0.00
...........................................................................AGGGTTGTGACTGGACACCCCG.....................................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
...........................................................................AGGGTTGTGACTGGACATCGAG.....................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
..................................GGATTGTCCAAACGCAATTCTT..............................................................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
...........................................................................AGGGATGTGACTGGACATCGCG.....................................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
..................................TGATTGTCCAAACGCTATTCTAG.............................................................................	23	1	1.00	0.00	0.00	0.00	1.00	0.00
...........................................................................AGGGTTGGGAATGGACATCGCG.....................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
.................................CTGATTGTCCAAACGCAATTCTTGT............................................................................	25	1	1.00	0.00	0.00	1.00	0.00	0.00
..................................TGATTGCCCAAACGCAATTC................................................................................	20	1	1.00	0.00	0.00	1.00	0.00	0.00
...........................................................................AGGGTTGTGACTGGACATCCCG.....................................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
......................................................................ACTCAAGGGTTGTGACTGGA............................................	20	1	1.00	0.00	0.00	0.00	1.00	0.00
.....................................TTGTCCAAACGCAATTCTTG.............................................................................	20	1	1.00	0.00	0.00	1.00	0.00	0.00
..................................TGGTTGTCCAAACGCAATTCT...............................................................................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
...........................................................................AGGGTTGTGACTGAACATCGCG.....................................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
...........................................................................AGGGTTGTGACTGGGCATCGCG.....................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
..................................TGATTGTCCAAACGCAATTCGTG.............................................................................	23	1	1.00	0.00	0.00	1.00	0.00	0.00

droWil1

AA---AATA-TTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATTT-CAAATACTCAAGGGTTGCATCTGGGCATCGCGGCTCGAAATAAGAATACA---------CCCAA-T-AA	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
..................................TGATTGTCCAAACGCAATTC................................................................................	20	1	185.00	1.00	1.00	14.00	169.00
...........................................................................AGGGTTGCATCTGGGCATCGCG.....................................	22	1	174.00	2.00	113.00	41.00	18.00
..................................TGATTGTCCAAACGCAATTCTTG.............................................................................	23	1	108.00	1.00	14.00	48.00	45.00
..................................TGATTGTCCAAACGCAATTCT...............................................................................	21	1	82.00	0.00	0.00	27.00	55.00
...........................................................................AGGGTTGCATCTGGGCATCGC......................................	21	1	21.00	1.00	15.00	4.00	1.00
..................................TGATTGTCCAAACGCAATTCTT..............................................................................	22	1	20.00	0.00	1.00	12.00	7.00
..................................TTATTGTCCAAACGCAATTCTTG.............................................................................	23	1	18.00	0.00	0.00	1.00	17.00
..........................................................................AAGGGTTGCATCTGGGCATCGC......................................	22	1	12.00	0.00	5.00	3.00	4.00
..................................TGATTGTCCAAACGCAATT.................................................................................	19	1	9.00	0.00	0.00	6.00	3.00
..................................TGATTGTCCAAACGCAATTCTTGT............................................................................	24	1	6.00	0.00	1.00	5.00	0.00
..................................TGAxTGTCCAAACGCAATTCTTG.............................................................................	22	1	5.00	0.00	0.00	2.00	3.00
.....................................TTGTCCAAACGCAATTCTTG.............................................................................	20	1	4.00	0.00	0.00	2.00	2.00
....................................ATTGTCCAAACGCAATTCTTG.............................................................................	21	1	4.00	0.00	0.00	1.00	3.00
...........................................................................AGGGTTGCATCTGGGCATC........................................	19	1	4.00	0.00	0.00	4.00	0.00
...........................................................................AGGGTTGCATCTGGGCATCG.......................................	20	1	3.00	0.00	0.00	1.00	2.00
..................................TGATxxTCCAAACGCAATTCTTG.............................................................................	21	1	3.00	0.00	0.00	0.00	3.00
.......................................GTCCAAACGCAATTCTTG.............................................................................	18	1	3.00	0.00	0.00	1.00	2.00
......................................TGTCCAAACGCAATTCTTG.............................................................................	19	1	3.00	0.00	0.00	2.00	1.00
..................................TGATTGTCCAAACGCATTC.................................................................................	19	1	2.00	0.00	0.00	2.00	0.00
...................................TATTGTCCAAACGCAATTCTTG.............................................................................	22	1	2.00	0.00	0.00	0.00	2.00
...........................................................................AGGGTTGCATATGGGCATCGCG.....................................	22	1	2.00	0.00	0.00	2.00	0.00
..................................TGACTGTCCAAACGCAATTCTTG.............................................................................	23	1	2.00	0.00	0.00	2.00	0.00
..................................TGATTGTCCAAACGCAATTCC...............................................................................	21	1	2.00	0.00	0.00	0.00	2.00
...........................................................................AGGGCTGCATCTGGGCATCGCG.....................................	22	1	2.00	0.00	2.00	0.00	0.00
..................................TGATTGTCCAAACGCxATTCTTG.............................................................................	22	1	2.00	0.00	0.00	1.00	1.00
...........................................................................AGTGTTGCATCTGGGCATAGCG.....................................	22	1	1.00	0.00	0.00	1.00	0.00
...........................................................................AGGGTTGCATCTGGGCATAGCG.....................................	22	1	1.00	0.00	0.00	1.00	0.00
..................................AGATTGTCCAAACGCAATTCTTG.............................................................................	23	1	1.00	0.00	0.00	0.00	1.00
...........................................................................ACGGATGCATCTGGGCATCGCG.....................................	22	1	1.00	0.00	1.00	0.00	0.00
..................................TGATTGTCCAAACGCAATTCG...............................................................................	21	1	1.00	0.00	0.00	1.00	0.00
..................................TGATTGTAAAAACGCAATTCTTG.............................................................................	23	1	1.00	0.00	0.00	1.00	0.00
...........................................................................AGGGTTGCATCTGGGCATCGCGT....................................	23	1	1.00	0.00	1.00	0.00	0.00
...........................................................................AGGGTTGCGACTGGGCATCGCG.....................................	22	1	1.00	0.00	1.00	0.00	0.00
..................................TGATTGTCCAAACCCAATTC................................................................................	20	1	1.00	0.00	0.00	0.00	1.00
..................................TGATTGTCCAAACGCAATTCTCG.............................................................................	23	1	1.00	0.00	0.00	1.00	0.00
..................................TGAxTCTCCAAACGCAATTCTT..............................................................................	21	1	1.00	0.00	0.00	0.00	1.00
..................................TGATATTCCAAACGCAATTCTTG.............................................................................	23	1	1.00	0.00	0.00	0.00	1.00
..................................TGATTGTCCAAATGCAATTCTTG.............................................................................	23	1	1.00	0.00	0.00	0.00	1.00
...........................................................................AGGGTTGCATCTTGGCATCGCG.....................................	22	1	1.00	0.00	1.00	0.00	0.00
..................................TGATTGTCCAAATGCAATTC................................................................................	20	1	1.00	0.00	0.00	0.00	1.00
...........................................................................AGGTTTGCATCTGGGCATCGCG.....................................	22	1	1.00	0.00	0.00	1.00	0.00
..................................TGATTGTCCAAACGTAATTCTT..............................................................................	22	1	1.00	0.00	0.00	0.00	1.00
..................................TGATTGTCCAAACGCAATTT................................................................................	20	1	1.00	0.00	0.00	1.00	0.00
..................................TGATTGTACAAACGCAATTCT...............................................................................	21	1	1.00	0.00	0.00	1.00	0.00
..................................TGATTGGCCAAACGCAATTCTTG.............................................................................	23	1	1.00	0.00	0.00	0.00	1.00
..................................TGATTGTCCAAACGCAAT..................................................................................	18	1	1.00	0.00	0.00	0.00	1.00
...........................................................................AGGGTTGCATCTGGGCACCGCG.....................................	22	1	1.00	0.00	1.00	0.00	0.00
..................................TGATCGTCCAAACGCAATTCTTG.............................................................................	23	1	1.00	0.00	0.00	1.00	0.00
...........................................................................AGGGTTGAATCTGGGCATCGCG.....................................	22	1	1.00	0.00	0.00	1.00	0.00
..................................CGATTGTCCAAACGCAATTCT...............................................................................	21	1	1.00	0.00	0.00	1.00	0.00
...........................................................................AGGGTTGCGACTGGGCATCGC......................................	21	1	1.00	0.00	0.00	1.00	0.00
...........................................................................AGGGTTGCATCTGGGCCTCGCG.....................................	22	1	1.00	0.00	1.00	0.00	0.00
.....................................TTGTCCAAACGAAATTCTTG.............................................................................	20	1	1.00	0.00	0.00	1.00	0.00
..................................CGATTGTCCAAACGCAATTCTTG.............................................................................	23	1	1.00	0.00	0.00	1.00	0.00
..................................TGATTGTCCAGACGCAATTCTTG.............................................................................	23	1	1.00	0.00	1.00	0.00	0.00
..................................TGATTGTCCAAACGCAATTA................................................................................	20	1	1.00	0.00	0.00	1.00	0.00
..................................TTATTGTCCAAACGCAATTCT...............................................................................	21	1	1.00	0.00	0.00	1.00	0.00
..................................TGATTxTCCAAACGCAATTCTTG.............................................................................	22	1	1.00	0.00	0.00	0.00	1.00
...........................................................................AGGGTTGCGTCTGGGCATCGCG.....................................	22	1	1.00	0.00	0.00	0.00	1.00
...........................................................................AGGGTTGCATCTGGGAATCGCG.....................................	22	1	1.00	0.00	0.00	1.00	0.00
..................................TGATTGTCCAAACGCAATTCA...............................................................................	21	1	1.00	0.00	0.00	1.00	0.00
............................................................................GGGTTGCATCTGGGCATCGCG.....................................	21	1	1.00	0.00	1.00	0.00	0.00
..................................TGATTTTCCAAACGCAATTCTTG.............................................................................	23	1	1.00	0.00	0.00	0.00	1.00
..................................TGATTGTCCACACGCAATTCTTG.............................................................................	23	1	1.00	0.00	0.00	1.00	0.00
..................................TGATTGTCCAAACTCAATTCTTG.............................................................................	23	1	1.00	0.00	0.00	1.00	0.00
..................................TGAxTGTCCAAACGCAATTCT...............................................................................	20	1	1.00	0.00	0.00	0.00	1.00
..................................TGATTGTCCAAACGTAATTCTTG.............................................................................	23	1	1.00	0.00	0.00	1.00	0.00
..................................TGATTTTCCAAACGCAATTCT...............................................................................	21	1	1.00	0.00	0.00	0.00	1.00
..................................TGATTTTCCAAAAGCAATTCTT..............................................................................	22	1	1.00	0.00	0.00	0.00	1.00
...........................................................................AGGGTTGCATCTGGACATCGCG.....................................	22	1	1.00	0.00	1.00	0.00	0.00
..................................TAATTGTCCAAACGCAATTCTTG.............................................................................	23	1	1.00	0.00	0.00	1.00	0.00
..................................TGATxxTCCAAACGCAATTCT...............................................................................	19	1	1.00	0.00	0.00	0.00	1.00
..................................TGACTGTCCAAACGCAATTCTT..............................................................................	22	1	1.00	0.00	0.00	0.00	1.00
.......................................TTCCAAACGCAATTCTTG.............................................................................	18	1	1.00	0.00	1.00	0.00	0.00
..................................TGATTGTCCAAACGCACTTCTTG.............................................................................	23	1	1.00	0.00	1.00	0.00	0.00
...........................................................................AGGGTTGCATCTGGGCATCGCT.....................................	22	1	1.00	0.00	0.00	0.00	1.00
...........................................................................AGGGGTGCATCTGGGCATCGCG.....................................	22	1	1.00	0.00	1.00	0.00	0.00
...........................................................................AGGGTTGCCTCTGGGCATCGCG.....................................	22	1	1.00	0.00	0.00	1.00	0.00
..................................TCATTGTCCAAACGCAATTCTTG.............................................................................	23	1	1.00	0.00	0.00	0.00	1.00
..................................TGATTTTCCAAACGCAATTCTT..............................................................................	22	1	1.00	0.00	0.00	1.00	0.00
...........................................................................AGGGTTTCATCTGGGCATCGCG.....................................	22	1	1.00	0.00	1.00	0.00	0.00
..................................TTATTGTCCAAACGCAATTC................................................................................	20	1	1.00	0.00	0.00	0.00	1.00

droVir3

GTATAAATA-TTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATTT-CAAATACTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATGAGAATCCAACCCA-CAACCAAA-C-AA	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
..................................TGATTGTCCAAACGCAATTC................................................................................	20	1	58.00	0.00	4.00	0.00	4.00	50.00
...........................................................................AGGGTTGCGACTGGGCATCGCG.....................................	22	1	49.00	5.00	20.00	17.00	2.00	5.00
..................................TGATTGTCCAAACGCAATTCT...............................................................................	21	1	32.00	0.00	17.00	0.00	1.00	14.00
..................................TGATTGTCCAAACGCAATTCTTG.............................................................................	23	1	23.00	1.00	13.00	3.00	0.00	6.00
..................................TGATTGTCCAAACGCAATTCTT..............................................................................	22	1	14.00	0.00	12.00	0.00	0.00	2.00
..................................TGATTGTCCAAACGCAATT.................................................................................	19	1	7.00	0.00	6.00	0.00	0.00	1.00
...........................................................................AGGGTTGCGACTGGGCATC........................................	19	1	6.00	0.00	0.00	0.00	0.00	6.00
..................................TGATTGTCCAAACGCAATTCTTGT............................................................................	24	1	4.00	0.00	4.00	0.00	0.00	0.00
..........................................................................AAGGGTTGCGACTGGGCATCGC......................................	22	1	2.00	0.00	1.00	0.00	1.00	0.00
...........................................................................AGGGTTGCGACTGGGCATCGCGG....................................	23	1	2.00	0.00	0.00	0.00	0.00	2.00
...................................GATTGTCCAAACGCAATTC................................................................................	19	1	1.00	0.00	0.00	0.00	0.00	1.00
.......................................GTCCAAACGCAATTCTTG.............................................................................	18	1	1.00	0.00	0.00	0.00	1.00	0.00
...........................................................................AGGATTGCGACTGGGCATCGCG.....................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
..................................TGGTTGTCCAAACGCAATTCTTG.............................................................................	23	1	1.00	0.00	1.00	0.00	0.00	0.00
..........TTAGGTCAATTCGATTTT..........................................................................................................	18	1	1.00	0.00	0.00	1.00	0.00	0.00
...........................................................................AGGGGTGCGACTGGGCATCGCG.....................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
...........................................................................AGGGTTGCGACTGGGCATCTCG.....................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
..................................TTATTGTCCAAACGCAATTCTTG.............................................................................	23	1	1.00	0.00	0.00	0.00	0.00	1.00
..................................TGATTGTCCAAACGAAATTCT...............................................................................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
..................................TGCTTGTCCGAACGCAATTCT...............................................................................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
...........................................................................AGGGTGGCGACTGGGCATCGTG.....................................	22	1	1.00	0.00	1.00	0.00	0.00	0.00
..................................TGATTGCCCAAACGCAATT.................................................................................	19	1	1.00	0.00	1.00	0.00	0.00	0.00
...................................GATTGTCCAAACGCAATTCTTG.............................................................................	22	1	1.00	0.00	0.00	0.00	0.00	1.00
...........................................................................AGGGTTGCGACTTGGCATCTCG.....................................	22	1	1.00	0.00	1.00	0.00	0.00	0.00
..................................TGATTGTCCAAACTCAATTCT...............................................................................	21	1	1.00	0.00	0.00	0.00	0.00	1.00
..................................TGATTGTCCAAACGCACTTC................................................................................	20	1	1.00	0.00	1.00	0.00	0.00	0.00
...................................GATTGGCCAAACGCAATTCTTG.............................................................................	22	1	1.00	0.00	1.00	0.00	0.00	0.00
...........................................................................AGGGTTGCGACTGGGTATCGCG.....................................	22	1	1.00	0.00	1.00	0.00	0.00	0.00
...........................................................................AGGGTTGCGACGGGGCATCGCG.....................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
..................................TGATTGTCCAAACGCAATTAT...............................................................................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
..................................CGATTCTCCAAACGCAATTCT...............................................................................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
...........................................................................AGGGTTGCGACTGGGCATCCCG.....................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
...........................................................................AGGGTTGCGACCGGGCATCGCG.....................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
...........................................................................AGGGTTGTGACTGGGCATCGCG.....................................	22	1	1.00	0.00	1.00	0.00	0.00	0.00
...........................................................................AGGGTGGCGACTGGGCATCGCG.....................................	22	1	1.00	0.00	1.00	0.00	0.00	0.00
..................................TGATTGTCCAAACGCAATTCG...............................................................................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
..................................GGATTGTCCAAACGCAATTC................................................................................	20	1	1.00	0.00	0.00	0.00	1.00	0.00
..................................TGATTATCCAAACGCAATTCTTG.............................................................................	23	1	1.00	0.00	1.00	0.00	0.00	0.00
...........................................................................AGTGTTGCGACTGGGCATCGCG.....................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
...........................................................................AGGGTTGCGACTGGGCATTGCG.....................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
...................................TATTGTCCAAACGCAATTCTTG.............................................................................	22	1	1.00	0.00	0.00	0.00	0.00	1.00
...........................................................................AGGGTTGCGACTGGGCATCGAG.....................................	22	1	1.00	0.00	1.00	0.00	0.00	0.00
...........................................................................AGGGTTGCGACTGGGCATCGCC.....................................	22	1	1.00	0.00	1.00	0.00	0.00	0.00
...........................................................................AGGGTTGCGACGGGGCATTGCG.....................................	22	1	1.00	0.00	1.00	0.00	0.00	0.00
...........................................................................AGGGTTGCGACTTGGCATCGCG.....................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
...........................................................................AGGGTTGCGACTGGGCATAGCG.....................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
..................................TGATTGTCCAAACACAATTCT...............................................................................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
...........................................................................AGGGTTGCGACTGGGCATCACGT....................................	23	1	1.00	0.00	0.00	1.00	0.00	0.00
..................................TGATTGTCCAAACGCAAATCCTG.............................................................................	23	1	1.00	0.00	1.00	0.00	0.00	0.00
..................................TGATTGTCCAAACGCAACTCT...............................................................................	21	1	1.00	1.00	0.00	0.00	0.00	0.00
...........................................................................AGGGTTGCGACTGGGCATCTCC.....................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
.....................................TTGTCCAAACGCAATTCTTG.............................................................................	20	1	1.00	0.00	0.00	0.00	0.00	1.00

droMoj3

AAACATATA-TTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATTTTTAAATACTCAAGGGTTGCATCTGGGCATCGCGGCTCGAAATGAGAATCCAACACAAAG-CCAAAATATA	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
..................................TGATTGTCCAAACGCAATTCTTG.............................................................................	23	1	54.00	0.00	28.00	26.00	0.00
..................................TGATTGTCCAAACGCAATTCT...............................................................................	21	1	48.00	1.00	27.00	19.00	1.00
...........................................................................AGGGTTGCATCTGGGCATCGCG.....................................	22	1	23.00	1.00	7.00	6.00	9.00
..................................TGATTGTCCAAACGCAATTCTT..............................................................................	22	1	14.00	0.00	10.00	4.00	0.00
..................................TGATTGTCCAAACGCAATTC................................................................................	20	1	12.00	0.00	5.00	7.00	0.00
..................................TGATTGTCCAAACGCAATTCTTGT............................................................................	24	1	7.00	0.00	4.00	2.00	1.00
...........................................................................AGGGTTGCATCTGGGCATCGC......................................	21	1	4.00	0.00	0.00	3.00	1.00
..................................TGATTGTCCAAACGCAATT.................................................................................	19	1	4.00	0.00	2.00	2.00	0.00
...........................................................................AGGGTTGCATCTGCGCCTCGCG.....................................	22	1	1.00	0.00	0.00	1.00	0.00
...........................................................................AGGGTTGCATCTGGTCATCGCG.....................................	22	1	1.00	0.00	1.00	0.00	0.00
..................................TGATTGTCCAAACGCAATTCTTT.............................................................................	23	1	1.00	0.00	1.00	0.00	0.00
..................................TGACTGTCCAAACGCAATTCT...............................................................................	21	1	1.00	0.00	0.00	1.00	0.00
..................................TGATTGTCCAAACGCCATTCTTG.............................................................................	23	1	1.00	0.00	0.00	1.00	0.00
...........................................................................AGGGTTGCATCTGGGCATCG.......................................	20	1	1.00	0.00	1.00	0.00	0.00
..................................TGAGTGTTCAAACGCAATTCTT..............................................................................	22	1	1.00	0.00	1.00	0.00	0.00
..................................TGATTGTCCACACGCAATTC................................................................................	20	1	1.00	0.00	1.00	0.00	0.00
........................................TCCAAACGCAATTCTTGT............................................................................	18	1	1.00	0.00	1.00	0.00	0.00
..................................TGATTGTCCAAACGCACTTCTTG.............................................................................	23	1	1.00	0.00	0.00	1.00	0.00
..................................TGATTGTCCAAACGCCATTCTT..............................................................................	22	1	1.00	0.00	0.00	1.00	0.00
..................................TGATTGTCCAAACGCGATTCTT..............................................................................	22	1	1.00	0.00	1.00	0.00	0.00
..................................TGATTGTCCAAACGCACTT.................................................................................	19	1	1.00	0.00	0.00	1.00	0.00
..................................TGATTGTCCAAGCGCAATTCT...............................................................................	21	1	1.00	0.00	1.00	0.00	0.00
..................................TGATTGTCCAAACGAAATTCTTT.............................................................................	23	1	1.00	0.00	0.00	1.00	0.00
..................................TGATTGTCCAAACGCAGTTCT...............................................................................	21	1	1.00	0.00	1.00	0.00	0.00
..................................TGATTGTCCAAACGCACTTCT...............................................................................	21	1	1.00	0.00	1.00	0.00	0.00
..................................TGATTGTCCAGACGCAATTCT...............................................................................	21	1	1.00	0.00	1.00	0.00	0.00
..................................TGATTGTCCAGACGCAATTCTTG.............................................................................	23	1	1.00	0.00	0.00	1.00	0.00
..................................TGATTGTCCAAACGCAATGCTTG.............................................................................	23	1	1.00	0.00	1.00	0.00	0.00
..................................GGATTGTCCAAACGCATTTCT...............................................................................	21	1	1.00	0.00	1.00	0.00	0.00
..................................TGATTGTCCAAACGCGATTCTTGT............................................................................	24	1	1.00	0.00	0.00	1.00	0.00
..................................CGATTGTCCAAACGCAATTCT...............................................................................	21	1	1.00	0.00	1.00	0.00	0.00

droGri2

TAACAAACA-TTTGGTGAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATTT-CAAAAACTCAAGGGTTGCATCTGGGCATCGCGGCTCGAAATGAGAATACAACACAAAAATCAAA-A-CA	Size	Hit Count	Total Norm	V109 Male body
...........................................................................AGGGTTGCATCTGGGCATCGCG.....................................	22	1	3.00	3.00

Generated: 04/20/2012 at 05:20:26 EDT

dme-mir-219

chr3L:17308106-17308205 +

Known_mirbase

intergenic

20-way Fast Statistical Aligner (FSA) re-alignment

Visually pleasing best hits from LASTZ and MAF

Legend

Re-alignment after removal of non-confident orthologs

20-way Secondary Structure

Small RNA-seq read pileup