dme-mir-219- 12- and 20-way alignments

dme-mir-219	chr3L:17308106-17308205 +	Known_mirbase
[View on miRBase]	[View on UCSC Genome Browser {Cornell Mirror}]	intergenic

Legend:

   mature strand at position 17308124-17308144
   star strand at position 17308164-17308185
   mutations
   read mismatches
   coordinate mismatch (possible incorrect ortholog)

12-way Fast Statistical Aligner re-alignment (From MAFs)

Species	Coordinate	Alignment
dm3	chr3L:17308091-17308220 +	AAATAAA--TAT-TTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCGGCAACCAAATCA
droSim1	chr3L:16646167-16646296 +	AAATAAA--TAT-TTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCGGCAACCAAATCA
droSec1	super_0:9359464-9359593 +	AAATAAA--TAT-TTGGTTAATTCAATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCGGCAACCAAATCA
droYak2	chr3L:16762572-16762701 -	AAATAAA--TAT-TTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCGGCAACCAAATCA
droEre2	scaffold_4784:16541302-16541431 -	AAATAAA--TAT-TTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCGGCAACCAAATCA
droAna3	scaffold_13337:8265335-8265463 +	CA--AAA--TATTTTGGTTAATTCAATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGAATT-CAAATACTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATACGAATACAACGAAGAGAACCATTTC
dp4	chrXR_group6:9338098-9338227 -	ATCAAAA--TAT-TTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-CCAATACTCAAGGGTTGTGACTGGACATCGCGGCTCGAAATAAGAATACAACCCAGCAACCAAAATC
droPer1	super_35:387455-387584 +	ATCAAAA--TAT-TTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-CCAATACTCAAGGGTTGTGACTGGACATCGCGGCTCGAAATAAGAATACAACCCATCAACCAAAATC
droWil1	scaffold_180955:2086473-2086601 +	aacaaaa--TAT-TTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATTT-CAAATACTCAAGGGTTGCATCTGGGCATCGCGGCTCGAAATAAGAATACA-CCCAATAACCAAAGTG
droVir3	scaffold_13049:5991416-5991542 -	GTATAAA--TAT-TTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATTT-CAAATACTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATGAGAATCCAACCCA-CAACCAAAC--
droMoj3	scaffold_6680:4316894-4317023 -	ACAAACATATAT-TTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATTTTTAAATACTCAAGGGTTGCATCTGGGCATCGCGGCTCGAAATGAGAATCCAACACA-AAGCCaaa--a
droGri2	scaffold_15110:13121817-13121942 +	A--CAAA--CAT-TTGGTGAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATTT-CAAAAACTCAAGGGTTGCATCTGGGCATCGCGGCTCGAAATGAGAATACAACACAAAAATCAAA--A

20-way Fast Statistical Aligner re-alignment (Top LASTZ hits)

Species	Coordinate	Lastz Id	Alignment
dm3	chr3L:17308091-17308220 +	NA	AAATAAATA-TTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCGGCAACCAAA-T-CA
droSim1	chr3L:16646167-16646296 +	2	AAATAAATA-TTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCGGCAACCAAA-T-CA
droSec1	super_0:9359464-9359593 +	2	AAATAAATA-TTTGGTTAATTCAATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCGGCAACCAAA-T-CA
droYak2	chr3L:16762572-16762701 -	9	AAATAAATA-TTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCGGCAACCAAA-T-CA
droEre2	scaffold_4784:16541302-16541431 -	7	AAATAAATA-TTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCGGCAACCAAA-T-CA
droEug1	scf7180000409711:25996-26125 -	14	AAATAAATA-TTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCGGCAGCCAAA-T-CA
droBia1	scf7180000302428:6673843-6673972 +	2	AAATAAATA-TTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATACTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCGGCAACCAAA-T-CG
droTak1	scf7180000415815:374397-374526 -	4	ATATAAATA-TTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATACTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCAACAACCAAA-T-CT
droEle1	scf7180000490993:219049-219178 +	3	AAATAAATA-TTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCAGCAACCAAT-T-CA
droRho1	scf7180000780124:81260-81389 +	3	AAATATATA-TTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCAGCAACCAAA-T-CA
droFic1	scf7180000454107:825208-825337 +	3	AAACAAATA-TTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-CCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCAACAACCAAG-T-CA
droKik1	scf7180000302474:640179-640299 +	6	A------TA-CTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGAT-T-CCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACGACTCGGCAACCAAG-----
droAna3	scaffold_13337:8265335-8265463 +	5	CAAAA--TATTTTGGTTAATTCAATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGAATT-CAAATACTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATACGAATACAACGAAGAGAACCAT-T-TC
droBip1	scf7180000396541:409877-410006 +	2	CAAAATATT-TTTGGTTAATTCAATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGAATT-CAAATACTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATACGAATACAACAAAGAAAACCAT-T-TA
dp4	chrXR_group6:9338098-9338227 -	14	ATCAAAATA-TTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-CCAATACTCAAGGGTTGTGACTGGACATCGCGGCTCGAAATAAGAATACAACCCAGCAACCAAA-A-TC
droPer1	super_35:387455-387584 +	8	ATCAAAATA-TTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-CCAATACTCAAGGGTTGTGACTGGACATCGCGGCTCGAAATAAGAATACAACCCATCAACCAAA-A-TC
droWil1	scaffold_180955:2086476-2086593 +	9	AA---AATA-TTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATTT-CAAATACTCAAGGGTTGCATCTGGGCATCGCGGCTCGAAATAAGAATACA---------CCCAA-T-AA
droVir3	scaffold_13049:5991414-5991542 -	55	GTATAAATA-TTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATTT-CAAATACTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATGAGAATCCAACCCA-CAACCAAA-C-AA
droMoj3	scaffold_6680:4316890-4317021 -	86	AAACATATA-TTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATTTTTAAATACTCAAGGGTTGCATCTGGGCATCGCGGCTCGAAATGAGAATCCAACACAAAG-CCAAAATATA
droGri2	scaffold_15110:13121815-13121944 +	21	TAACAAACA-TTTGGTGAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATTT-CAAAAACTCAAGGGTTGCATCTGGGCATCGCGGCTCGAAATGAGAATACAACACAAAAATCAAA-A-CA

[View All Possible Orthologs]

Original 12-way multiz alignment with reads super-imposed

Species

Alignment

dm3

AAATAAA--TAT-TTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCGGCAACCAAATCA

Size

Hit Count

Total Norm

droSim1

AAATAAA--TAT-TTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCGGCAACCAAATCA	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
....................................TGATTGTCCAAACGCAATTC..............................................................................	20	1	1042.00	0.00	1010.00	29.00	3.00
....................................TGATTGTCCAAACGCAATTCT.............................................................................	21	1	311.00	0.00	299.00	12.00	0.00
....................................TGATTGTCCAAACGCAATTCTTG...........................................................................	23	1	143.00	2.00	120.00	4.00	17.00
.............................................................................AGGGTTGCGACTGGGCATCGCG...................................	22	1	76.00	28.00	23.00	0.00	25.00
....................................TTATTGTCCAAACGCAATTCTTG...........................................................................	23	1	23.00	0.00	19.00	2.00	2.00
....................................TGATTGTCCAAACGCAATTCTT............................................................................	22	1	23.00	0.00	23.00	0.00	0.00
....................................TGATTGTCCAAACGCAATT...............................................................................	19	1	22.00	0.00	22.00	0.00	0.00
.......................................TTGTCCAAACGCAATTCTTG...........................................................................	20	1	19.00	0.00	17.00	1.00	1.00
.....................................TATTGTCCAAACGCAATTCTTG...........................................................................	22	1	18.00	0.00	16.00	2.00	0.00
....................................TGATTGTCCAAACTCAATTCT.............................................................................	21	1	17.00	0.00	17.00	0.00	0.00
.............................................................................AGGGTTGCGACTGGGCATCGC....................................	21	1	15.00	1.00	9.00	0.00	5.00
......................................ATTGTCCAAACGCAATTCTTG...........................................................................	21	1	12.00	0.00	11.00	1.00	0.00
....................................TGATTGTCCAAACGCAAT................................................................................	18	1	8.00	0.00	8.00	0.00	0.00
.............................................................................AGGGTTGCGACTGGGCATC......................................	19	1	7.00	0.00	5.00	0.00	2.00
.........................................GTCCAAACGCAATTCTTG...........................................................................	18	1	6.00	0.00	5.00	0.00	1.00
.............................................................................AGGGTTGCGACTGGGCATCGCGA..................................	23	1	5.00	0.00	5.00	0.00	0.00
....................................TGATTTTCCAAACGCAATTCTTG...........................................................................	23	1	5.00	0.00	5.00	0.00	0.00
............................................................................AAGGGTTGCGACTGGGCATCGC....................................	22	1	4.00	0.00	3.00	0.00	1.00
....................................TGATTGTCCAAACTCAATTC..............................................................................	20	1	4.00	0.00	4.00	0.00	0.00
....................................TTATTGTCCAAACGCAATTC..............................................................................	20	1	4.00	0.00	4.00	0.00	0.00
........................................TGTCCAAACGCAATTCTTG...........................................................................	19	1	3.00	0.00	3.00	0.00	0.00
....................................TGATTGTCCAGACGCAATTCTTG...........................................................................	23	1	3.00	0.00	3.00	0.00	0.00
.............................................................................AGGGTTGCGACTGGGCATCG.....................................	20	1	2.00	0.00	2.00	0.00	0.00
....................................TGATTGTCCAAACCCAATTC..............................................................................	20	1	2.00	0.00	2.00	0.00	0.00
....................................TGATTGTCCAAACTCAATTCTT............................................................................	22	1	2.00	0.00	2.00	0.00	0.00
....................................TGATTGTCCGGACGCAATTCTTG...........................................................................	23	1	2.00	0.00	2.00	0.00	0.00
....................................TGATTGTCCAGACGCAATTCT.............................................................................	21	1	2.00	0.00	2.00	0.00	0.00
....................................TGATxxTCCAAACGCAATTCTTG...........................................................................	21	1	2.00	0.00	2.00	0.00	0.00
....................................TGATTGTCCAGACGCAATTC..............................................................................	20	1	2.00	0.00	2.00	0.00	0.00
....................................TGATTCTCCAAACGCAATTCTTG...........................................................................	23	1	2.00	0.00	2.00	0.00	0.00
....................................TGATTGTCCAAACGCAATTCG.............................................................................	21	1	2.00	0.00	2.00	0.00	0.00
....................................TTATTGTCCAAACGCAATTCT.............................................................................	21	1	2.00	0.00	2.00	0.00	0.00
....................................TGATTGTCCAAACGCAATTCC.............................................................................	21	1	2.00	0.00	2.00	0.00	0.00
....................................TGATTGTCCAAACGCxATTCT.............................................................................	20	1	2.00	0.00	2.00	0.00	0.00
....................................TCATTGTCCAAACGCAATTCTTG...........................................................................	23	1	2.00	0.00	2.00	0.00	0.00
....................................TGATTGCCCAAACGCAATTC..............................................................................	20	1	2.00	0.00	2.00	0.00	0.00
....................................TTATTGTCCAAACGCAATTCTT............................................................................	22	1	2.00	0.00	2.00	0.00	0.00
....................................TGATTGTCCAAACGTAATTCT.............................................................................	21	1	1.00	0.00	1.00	0.00	0.00
....................................TGATCGTCCAAACGCAATTCTTG...........................................................................	23	1	1.00	0.00	1.00	0.00	0.00
....................................TGATCGTCCAAACGCAATTC..............................................................................	20	1	1.00	0.00	1.00	0.00	0.00
.....................................TATTGTCCAAACGCAATTCT.............................................................................	20	1	1.00	0.00	1.00	0.00	0.00
....................................TGATTGCCCAAACGCAATTCT.............................................................................	21	1	1.00	0.00	1.00	0.00	0.00
....................................TGATTGTCCAAACGCGATTC..............................................................................	20	1	1.00	0.00	1.00	0.00	0.00
......................................ATTGTCCAAACGCAATTC..............................................................................	18	1	1.00	0.00	1.00	0.00	0.00
....................................TGATTGTCCxAACGCAATTC..............................................................................	19	1	1.00	0.00	1.00	0.00	0.00
....................................TGATTGTCCAAACGCAATTT..............................................................................	20	1	1.00	0.00	1.00	0.00	0.00
....................................TGATTGTCCAAACGAAATTCT.............................................................................	21	1	1.00	0.00	1.00	0.00	0.00
....................................TGATTGTCCGGACGCAATTCT.............................................................................	21	1	1.00	0.00	1.00	0.00	0.00
....................................TGATTGTCCAAACxCAATTCTT............................................................................	21	1	1.00	0.00	0.00	1.00	0.00
......................................TGTGTCCAAACGCAATTCTTG...........................................................................	21	1	1.00	0.00	0.00	0.00	1.00
.............................................................................AGGGTTGCGACTGGGCATCGCGT..................................	23	1	1.00	1.00	0.00	0.00	0.00
....................................TGATTxTCCAAACGCAATTCT.............................................................................	20	1	1.00	0.00	1.00	0.00	0.00
....................................TTATTCTCCAAACGCAATTCTTG...........................................................................	23	1	1.00	0.00	1.00	0.00	0.00
....................................TGATxxTCCAAACGCAATTCT.............................................................................	19	1	1.00	0.00	1.00	0.00	0.00
....................................TGATTCTCCAGACGCAATTCTTG...........................................................................	23	1	1.00	0.00	1.00	0.00	0.00
.............................................................................AGGGTTGCGACTCGGCATCGCG...................................	22	1	1.00	1.00	0.00	0.00	0.00
.....................................TATTGTCCAAACGCAATTCTT............................................................................	21	1	1.00	0.00	1.00	0.00	0.00
....................................TGAATGTCCAAACGCAATTC..............................................................................	20	1	1.00	0.00	1.00	0.00	0.00
.............................................................................AGGGTTGCGACTGGGCATCGCGG..................................	23	1	1.00	0.00	1.00	0.00	0.00
......................................ATTGTCCAAACGCAATTCT.............................................................................	19	1	1.00	0.00	1.00	0.00	0.00
....................................TGATTGTCCAAACxAAATTCT.............................................................................	20	1	1.00	0.00	1.00	0.00	0.00
....................................TCATTGTCCAAACGCAATTCTGG...........................................................................	23	1	1.00	0.00	1.00	0.00	0.00
....................................TGATTxTCCAAACGCAATT...............................................................................	18	1	1.00	0.00	1.00	0.00	0.00
.............................................................................ATGGTTGCGACTGGGCATCGC....................................	21	1	1.00	0.00	0.00	0.00	1.00
....................................TGATTCTCCAAACGCAATTCT.............................................................................	21	1	1.00	0.00	1.00	0.00	0.00
....................................TGACTGTCCAAACGCAATTCTTG...........................................................................	23	1	1.00	0.00	1.00	0.00	0.00
......................................TCTGTCCAAACGCAATTCTTG...........................................................................	21	1	1.00	0.00	1.00	0.00	0.00
....................................TGATTGTCCAAACGCATTCC..............................................................................	20	1	1.00	0.00	1.00	0.00	0.00
.............................................................................AGGGTTGCGACTGGGCATCGCGC..................................	23	1	1.00	0.00	1.00	0.00	0.00
....................................TCATTGTCCAAACTCAATTC..............................................................................	20	1	1.00	0.00	1.00	0.00	0.00
....................................TGATTGTCCAAACGCATTTCTT............................................................................	22	1	1.00	0.00	1.00	0.00	0.00
....................................TGATTATCCAAACGCAATTC..............................................................................	20	1	1.00	0.00	1.00	0.00	0.00
..............................................................ATAT-TAAATATTCAAGGC.....................................................	18	1	1.00	0.00	0.00	0.00	1.00
....................................TGATTGTCCAAACCCAATTCT.............................................................................	21	1	1.00	0.00	1.00	0.00	0.00
.............................................................................AGGGGTGCGACTGGGCATCGC....................................	21	1	1.00	0.00	0.00	0.00	1.00
....................................TGATTGTCCAAACGCxATTCTT............................................................................	21	1	1.00	0.00	1.00	0.00	0.00
....................................TGATTGTCCAAACxCAATTCTGG...........................................................................	22	1	1.00	0.00	1.00	0.00	0.00
....................................TGATTTTCCAAACGCAATTCT.............................................................................	21	1	1.00	0.00	1.00	0.00	0.00
....................................TGATTGTCCAAATGCAATTC..............................................................................	20	1	1.00	0.00	1.00	0.00	0.00
.............................................................................AGGGTTGCGGCTGGGCATCGCG...................................	22	1	1.00	1.00	0.00	0.00	0.00
....................................TGATTGTCCAAACTCAATT...............................................................................	19	1	1.00	0.00	1.00	0.00	0.00
.....................................TATTGTCCAAACTCAATTCT.............................................................................	20	1	1.00	0.00	1.00	0.00	0.00
....................................TGATTTTCCAAACGCAATTCTT............................................................................	22	1	1.00	0.00	1.00	0.00	0.00
.............................................................................AGGGTTGGGACTGGGCATCGCG...................................	22	1	1.00	1.00	0.00	0.00	0.00
....................................TGATTGTCCAAACxCAATTCT.............................................................................	20	1	1.00	0.00	1.00	0.00	0.00
....................................TGATTGTCCAAACGTAATTCTT............................................................................	22	1	1.00	0.00	1.00	0.00	0.00

droSec1

AAATAAA--TAT-TTGGTTAATTCAATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCGGCAACCAAATCA	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
.............................................................................AGGGTTGCGACTGGGCATCGCG...................................	22	1	130.00	15.00	72.00	43.00
....................................TGATTGTCCAAACGCAATTCT.............................................................................	21	1	31.00	3.00	0.00	28.00
....................................TGATTGTCCAAACGCAATTCTTG...........................................................................	23	1	27.00	0.00	4.00	23.00
......A--TxT-TGGGTTAAATCAATT..........................................................................................................	18	1	24.00	0.00	24.00	0.00
....................................TGATTGTCCAAACGCAATTCTT............................................................................	22	1	15.00	3.00	0.00	12.00
............................................................................AAGGGTTGCGACTGGGCATCGC....................................	22	1	14.00	0.00	12.00	2.00
....................................TGATTGTCCAAACGCAATT...............................................................................	19	1	10.00	0.00	0.00	10.00
.............................................................................AGGGTTGCGACTGGGCATCGCGT..................................	23	1	6.00	0.00	5.00	1.00
....................................TGATTGTCCAAACGCAATTC..............................................................................	20	1	4.00	0.00	0.00	4.00
....................................TGATTGTCCAAACGTAATTCTTG...........................................................................	23	1	3.00	0.00	3.00	0.00
.............................................................................AGGGTTGCGACTGGGCATCGCGA..................................	23	1	3.00	0.00	1.00	2.00
.............................................................................AGGGTTGCGACTGGGCATCGC....................................	21	1	3.00	0.00	1.00	2.00
.......................................TTGTCCAAACGCAATTCTTG...........................................................................	20	1	3.00	0.00	0.00	3.00
....................................TTATTGTCCAAACGCAATTCTTG...........................................................................	23	1	2.00	0.00	0.00	2.00
....................................TGATTTTCCAAACGCAATTCT.............................................................................	21	1	2.00	0.00	0.00	2.00
....................................TGATTGTCCAAACGCAATTCTTGT..........................................................................	24	1	2.00	0.00	0.00	2.00
.............................................................................CGGGTTGCGACTGGGCATCGCG...................................	22	1	2.00	0.00	1.00	1.00
.............................................................................AGGGTTGCGACTGGGCATTGCGT..................................	23	1	1.00	0.00	1.00	0.00
....................................TGATAGTCCAAACGCAATTCT.............................................................................	21	1	1.00	0.00	0.00	1.00
....................................TGATTCTCCAAACGCAATTCTTG...........................................................................	23	1	1.00	0.00	0.00	1.00
.........TAT-TTGGTTAAACCAATT..........................................................................................................	18	1	1.00	0.00	1.00	0.00
.............................................................................AGGCTTGCGACTGGGCATCGCG...................................	22	1	1.00	0.00	1.00	0.00
.....................................TATTGTCCAAACGCAATTCTTG...........................................................................	22	1	1.00	0.00	1.00	0.00
.............................................................................AGGGTTGCCACTGGGCATCGCG...................................	22	1	1.00	0.00	1.00	0.00
....................................TGATTGTCCGGACGCAATTCTT............................................................................	22	1	1.00	0.00	0.00	1.00
....................................TGATTGTCCGAACGCAATTCT.............................................................................	21	1	1.00	0.00	0.00	1.00
.............................................................................AGGGTTGCGACTGGGCATGGCG...................................	22	1	1.00	1.00	0.00	0.00
....................................GGATTGTCCAAACGCAATTCTT............................................................................	22	1	1.00	0.00	0.00	1.00
.............................................................................AGGTTTGCGACTGGGCATCGCG...................................	22	1	1.00	0.00	1.00	0.00
........................................TGTCCAAACGCAATTCTTG...........................................................................	19	1	1.00	0.00	0.00	1.00
.............................................................................AGGGTTGCGGCTGGGCATCGCG...................................	22	1	1.00	0.00	1.00	0.00
....................................TGATTTTCCAAACGCAATTCTT............................................................................	22	1	1.00	0.00	0.00	1.00
....................................TGATTGTCCAGACGCAATTCTTGT..........................................................................	24	1	1.00	0.00	0.00	1.00
....................................TCATTGTCCAAACGCAATTCTTG...........................................................................	23	1	1.00	0.00	0.00	1.00
.......................................TTGTCCAAACGCAATTCTTGA..........................................................................	21	1	1.00	0.00	0.00	1.00
.............................................................................ATGGTTGCGACTGGGCATCGCG...................................	22	1	1.00	0.00	1.00	0.00
.............................................................................AGGGTTGCGACTCGGCATCGCG...................................	22	1	1.00	0.00	1.00	0.00
....................................TGATAGTCCAAACGCAATTCTTG...........................................................................	23	1	1.00	0.00	0.00	1.00
....................................TGATTGTCAAAACGCAATTCTTGT..........................................................................	24	1	1.00	0.00	0.00	1.00
......................................ATTGTCCAAACGCAATTCT.............................................................................	19	1	1.00	0.00	0.00	1.00
...............................................................................GGTTGCGACTGGGCATCGCG...................................	20	1	1.00	0.00	0.00	1.00
.............................................................................AGGGTTGCGACTGGGCATCGCT...................................	22	1	1.00	0.00	0.00	1.00
....................................TCATTGTCCAAACGCAATTCTT............................................................................	22	1	1.00	0.00	0.00	1.00

droYak2

AAATAAA--TAT-TTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCGGCAACCAAATCA	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
.............................................................................AGGGTTGCGACTGGGCATCGCG...................................	22	1	92.00	21.00	16.00	5.00	36.00	14.00
....................................TGATTGTCCAAACGCAATTCTTG...........................................................................	23	1	41.00	2.00	7.00	5.00	16.00	11.00
....................................TGATTGTCCAAACGCAATTCT.............................................................................	21	1	30.00	0.00	7.00	0.00	8.00	15.00
....................................TGATTGTCCAAACGCAATTC..............................................................................	20	1	29.00	0.00	2.00	2.00	3.00	22.00
....................................TGATTGTCCAAACGCAATTCTT............................................................................	22	1	9.00	0.00	4.00	0.00	4.00	1.00
.............................................................................AGGGTTGCGACTGGGCATCGC....................................	21	1	8.00	2.00	0.00	0.00	0.00	6.00
....................................TGATTGTCCAAACGCAATTCTTGT..........................................................................	24	1	6.00	0.00	1.00	1.00	4.00	0.00
............................................................................AAGGGTTGCGACTGGGCATCGC....................................	22	1	5.00	2.00	0.00	0.00	0.00	3.00
.............................................................................AGGGTTGCGACTGGGCATC......................................	19	1	5.00	0.00	0.00	0.00	0.00	5.00
.............................................................................AGGGTTGCGACTGGGCATCGCGT..................................	23	1	2.00	1.00	0.00	0.00	1.00	0.00
....................................TGATTGTCCAAACGCCATTCTTG...........................................................................	23	1	2.00	0.00	0.00	0.00	2.00	0.00
....................................TGATTGTCCAAACGCAATTCC.............................................................................	21	1	2.00	0.00	0.00	0.00	0.00	2.00
....................................TGATTGTCCAAACGCAATT...............................................................................	19	1	2.00	0.00	0.00	0.00	2.00	0.00
.............................................................................AGGGTTGCGACTGGGCATCG.....................................	20	1	1.00	0.00	0.00	0.00	0.00	1.00
.........................................GTCCAAACGCAATTCTTG...........................................................................	18	1	1.00	0.00	0.00	0.00	0.00	1.00
.............................................................................AGGGTTGCGACTGGGAATCGCT...................................	22	1	1.00	1.00	0.00	0.00	0.00	0.00
.....................................GATTGTCCAAACGCAATTCTTGT..........................................................................	23	1	1.00	1.00	0.00	0.00	0.00	0.00
.............................................................................AGGGTTGCGAATGGGCATCGCG...................................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
....................................TGATTGTCCAAACGCAAA................................................................................	18	1	1.00	0.00	0.00	0.00	0.00	1.00
....................................TGATTGTCCAAACGCACTTCTTG...........................................................................	23	1	1.00	0.00	0.00	0.00	1.00	0.00
....................................TGATTGTCCAAACACAATGC..............................................................................	20	1	1.00	0.00	1.00	0.00	0.00	0.00
.............................................................................AGGGGTGCGACTGGGCATCGCG...................................	22	1	1.00	0.00	1.00	0.00	0.00	0.00
....................................TGATTGTGCAAACGCAATTCTTG...........................................................................	23	1	1.00	0.00	0.00	0.00	1.00	0.00
....................................TGATTGTCCAAACTCAATTCTT............................................................................	22	1	1.00	0.00	0.00	0.00	0.00	1.00
....................................TGATTGTCCAAACGCAATTT..............................................................................	20	1	1.00	0.00	1.00	0.00	0.00	0.00
.............................................................................AGGGTTGCGACTGGGCATCTCG...................................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
....................................TTATTGTCCAAACGCAATTCTTG...........................................................................	23	1	1.00	0.00	0.00	0.00	0.00	1.00
.............................................................................AGGGTTGCGACTGGGCATCCCC...................................	22	1	1.00	0.00	1.00	0.00	0.00	0.00
.............................................................................AGGGTTGCGCCTGGGCCTCGCG...................................	22	1	1.00	1.00	0.00	0.00	0.00	0.00
....................................TGATTGTCTAAACGCAATTATTGT..........................................................................	24	1	1.00	0.00	0.00	0.00	1.00	0.00
.............................................................................AGGGCTGCGACTGGGCATCGCC...................................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
....................................TGATTGTCCAAAAGCAATTAT.............................................................................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
.............................................................................AGGGTTGCGACCGGGCATCGCG...................................	22	1	1.00	0.00	0.00	0.00	0.00	1.00
....................................TGATTGTCCAAACACAATTCTT............................................................................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
................................................................................GTTGCGACTGGGCATCGCG...................................	19	1	1.00	0.00	0.00	0.00	0.00	1.00
.............................................................................AGGGTTGCGCCTGGGCATCGCG...................................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
.....................................TATTGTCCAAACGCAATTCTTG...........................................................................	22	1	1.00	0.00	0.00	0.00	0.00	1.00
.............................................................................AGGGTTCCGACTGCGCATCGCG...................................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
....................................TGATTGTCCAAACGCAACT...............................................................................	19	1	1.00	0.00	1.00	0.00	0.00	0.00
.............................................................................AGGGTTGCGACTGGGCATCGCGA..................................	23	1	1.00	0.00	0.00	0.00	0.00	1.00
........................................TGTCCAAACGCAATTCTCG...........................................................................	19	1	1.00	0.00	0.00	0.00	1.00	0.00
.............................................................................AGGGTTGCGACTGGGCATCGCGTT.................................	24	1	1.00	0.00	0.00	0.00	0.00	1.00
.............................................................................AGGGTTGCGACTGGGCCTCGCG...................................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
.............................................................................ACGGTCGCGACTGGGCATCGCG...................................	22	1	1.00	1.00	0.00	0.00	0.00	0.00
.............................................................................AGCGTTGCGACTGGGCATCGCG...................................	22	1	1.00	0.00	0.00	0.00	0.00	1.00
.............................................................................AGGGTTGCGACTGGGCAGCGCG...................................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
....................................TGATTGGCCAAATGCAATTCTT............................................................................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
....................................TGATTGACCAAACGCAATGCTT............................................................................	22	1	1.00	0.00	1.00	0.00	0.00	0.00

droEre2

AAATAAA--TAT-TTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCGGCAACCAAATCA	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
.............................................................................AGGGTTGCGACTGGGCATCGCG...................................	22	1	195.00	11.00	22.00	17.00	145.00
....................................TGATTGTCCAAACGCAATTCTTG...........................................................................	23	1	69.00	1.00	14.00	3.00	51.00
....................................TGATTGTCCAAACGCAATTCT.............................................................................	21	1	52.00	0.00	13.00	0.00	39.00
....................................TGATTGTCCAAACGCAATTCTT............................................................................	22	1	26.00	0.00	2.00	0.00	24.00
....................................TGATTGTCCAAACGCAATTC..............................................................................	20	1	9.00	0.00	1.00	0.00	8.00
............................................................................AAGGGTTGCGACTGGGCATCGC....................................	22	1	7.00	1.00	0.00	0.00	6.00
.......................................TTGTCCAAACGCAATTCTTG...........................................................................	20	1	6.00	0.00	0.00	0.00	6.00
.............................................................................AGGGTTGCGACTGGGCATCGC....................................	21	1	4.00	0.00	1.00	0.00	3.00
....................................TGATTGTCCAAACGCAATTCTTGT..........................................................................	24	1	4.00	0.00	2.00	0.00	2.00
....................................TGATTGTCCAAACGCAATT...............................................................................	19	1	4.00	0.00	0.00	0.00	4.00
.............................................................................ATGGTTGCGACTGGGCATCGCG...................................	22	1	4.00	1.00	0.00	0.00	3.00
....................................TTATTGTCCAAACGCAATTCTTG...........................................................................	23	1	3.00	0.00	0.00	0.00	3.00
.............................................................................AGGGTTGCGACTGGGCATCGCGT..................................	23	1	3.00	1.00	0.00	0.00	2.00
.............................................................................AGGGTTGCGACTTGGCATCGCG...................................	22	1	3.00	0.00	0.00	1.00	2.00
.............................................................................AGGGTTGCTACTGGGCATCGCG...................................	22	1	3.00	0.00	0.00	0.00	3.00
......................................ATTGTCCAAACGCAATTCTTGT..........................................................................	22	1	2.00	0.00	0.00	0.00	2.00
.............................................................................AGGGTTGCGACTGGGCATCTCG...................................	22	1	2.00	0.00	1.00	1.00	0.00
.............................................................................GGGGTTGCGACTGGGCATCGCG...................................	22	1	2.00	0.00	0.00	0.00	2.00
.............................................................................AGGGTTGCGACTGGGCATCCCG...................................	22	1	2.00	0.00	1.00	1.00	0.00
.............................................................................AGGGTTGCGACCGGGCATCGCG...................................	22	1	2.00	0.00	0.00	1.00	1.00
.............................................................................AGTGTTGCGACTGGGCATCGCG...................................	22	1	2.00	0.00	0.00	1.00	1.00
.............................................................................AGGGTTGCGACTGGGCATTGCG...................................	22	1	2.00	0.00	0.00	1.00	1.00
.............................................................................AGGGCTGCGACTGGGCATCGCG...................................	22	1	2.00	0.00	0.00	0.00	2.00
....................................TGATTGTCCAAACGCAATTCTTCT..........................................................................	24	1	1.00	0.00	0.00	0.00	1.00
.............................................................................AGGGTTGCGACTGGGCATCG.....................................	20	1	1.00	0.00	0.00	0.00	1.00
....................................TGATTGTCCAAACGCAACTCTTG...........................................................................	23	1	1.00	0.00	0.00	0.00	1.00
....................................TGATTGTCCAAACGCxATTCTTG...........................................................................	22	1	1.00	0.00	0.00	0.00	1.00
....................................TGATTGTCCAAACGCAATTCTTT...........................................................................	23	1	1.00	0.00	0.00	0.00	1.00
....................................TTATTGTCCAAACGCAATTCTTGT..........................................................................	24	1	1.00	0.00	0.00	0.00	1.00
....................................TGATTGTCCAAACGCAATTCTTA...........................................................................	23	1	1.00	0.00	0.00	0.00	1.00
.............................................................................AGGGTTGCGAATGGGCATCGCG...................................	22	1	1.00	0.00	0.00	0.00	1.00
.............................................................................AGGATTGCGACTGGGCATCGCG...................................	22	1	1.00	0.00	0.00	1.00	0.00
.............................................................................AGGGTTGCGACTGGGCATCGAGT..................................	23	1	1.00	0.00	0.00	0.00	1.00
...........T-TAGGTCAATTCGATTTT........................................................................................................	18	1	1.00	0.00	0.00	1.00	0.00
.............................................................................AGGGGTGCGACTGGGCATCGCG...................................	22	1	1.00	0.00	0.00	1.00	0.00
.............................................................................AGGGTTGCGACTGGGCATGGCG...................................	22	1	1.00	0.00	1.00	0.00	0.00
.............................................................................AGGGTTGCGACTGGGAATCGCG...................................	22	1	1.00	0.00	0.00	0.00	1.00
....................................TGATTGTCCAAACTCAATTCTTG...........................................................................	23	1	1.00	0.00	0.00	0.00	1.00
.............................................................................AGGTTTGCGACTGGGCATCGCG...................................	22	1	1.00	1.00	0.00	0.00	0.00
.............................................................................AAGGTTGCGACTGGGCATCGCG...................................	22	1	1.00	0.00	1.00	0.00	0.00
....................................TGATTGTCCCAACGCACTTCTT............................................................................	22	1	1.00	0.00	1.00	0.00	0.00
.............................................................................AGGGTTGCGACTGGGCATCACG...................................	22	1	1.00	0.00	1.00	0.00	0.00
.............................................................................ATGGTTGCGACTGGGCATCGCGT..................................	23	1	1.00	0.00	1.00	0.00	0.00
.............................................................................AGGGTTGCGACGGGGCATCGCG...................................	22	1	1.00	0.00	0.00	1.00	0.00
....................................TGATATTCCAAACGCAATTCT.............................................................................	21	1	1.00	0.00	0.00	0.00	1.00
.............................................................................AGGGTTCCGACTGGGCATCGCG...................................	22	1	1.00	0.00	0.00	0.00	1.00
....................................TGATTGTCCAAACGCAATGCTTG...........................................................................	23	1	1.00	0.00	1.00	0.00	0.00
.............................................................................AGGGTTGCGACTGGGCATCGCT...................................	22	1	1.00	0.00	0.00	0.00	1.00
.............................................................................AGGGTTGTGACTGGGCATCGCG...................................	22	1	1.00	0.00	0.00	0.00	1.00
.............................................................................AGGGTTGCGACTGGTCATCGCG...................................	22	1	1.00	0.00	0.00	0.00	1.00
...........T-TTGGxTAATGCGATTTTT.......................................................................................................	18	1	1.00	0.00	0.00	0.00	1.00
....................................TGATTATCCAAACGCAATTCTTG...........................................................................	23	1	1.00	0.00	0.00	0.00	1.00
....................................TTATTGTCCAAACGCAATTCT.............................................................................	21	1	1.00	0.00	0.00	0.00	1.00
.............................................................................AGGGTTGCGACTGGGCATCGAG...................................	22	1	1.00	0.00	0.00	0.00	1.00
....................................TGATTGTCCAAACGCCATTCTTG...........................................................................	23	1	1.00	0.00	1.00	0.00	0.00
.............................................................................AGGGTTGCGTCTGGTCATCGCG...................................	22	1	1.00	0.00	0.00	0.00	1.00
.............................................................................AGGGTTGCGACTGTGCATCGCG...................................	22	1	1.00	0.00	0.00	0.00	1.00
........................................TGTCCAAATGCAATTCTTG...........................................................................	19	1	1.00	0.00	0.00	0.00	1.00
....................................TGATTCTCCAAACGCAATTCTT............................................................................	22	1	1.00	0.00	0.00	0.00	1.00
.............................................................................AGGGTTGCGACTGGGCATAGCG...................................	22	1	1.00	0.00	0.00	1.00	0.00
....................................TGATxxTCCAAACGCAATTCTT............................................................................	20	1	1.00	0.00	0.00	0.00	1.00
....................................TTATTGTCCAAACGCxATTCTTG...........................................................................	22	1	1.00	0.00	0.00	0.00	1.00
.............................................................................AGGGTTGTGACTGGGCCTCGCG...................................	22	1	1.00	1.00	0.00	0.00	0.00
.............................................................................AGGGTTGCGACTAGGCATCGCG...................................	22	1	1.00	0.00	0.00	0.00	1.00
....................................TGATTGTCCAAACGCxATTCT.............................................................................	20	1	1.00	0.00	0.00	0.00	1.00
.............................................................................AGGGTTGCGACTGGGCATCACGT..................................	23	1	1.00	0.00	0.00	1.00	0.00
.............................................................................AGGGTTGTGACTGGACATCGCG...................................	22	1	1.00	1.00	0.00	0.00	0.00
............................................................................AATGGTTGCGACTGGGCATCGC....................................	22	1	1.00	0.00	0.00	0.00	1.00
....................................TGCTTGTCCAAACGCAATTCTTG...........................................................................	23	1	1.00	0.00	0.00	0.00	1.00
....................................TGATTTTCCAAACGCAATTCTTG...........................................................................	23	1	1.00	0.00	0.00	0.00	1.00
....................................TGACTGTCCAAGCGCAATTCTT............................................................................	22	1	1.00	0.00	1.00	0.00	0.00
.............................................................................AGGGTTGCGACTGGGCATCGGG...................................	22	1	1.00	0.00	1.00	0.00	0.00
.............................................................................AGCGTTGCGACTGGGCATCGCG...................................	22	1	1.00	0.00	0.00	0.00	1.00
.............................................................................AGGGTTGCGACTxGGCATCGCG...................................	21	1	1.00	0.00	0.00	0.00	1.00
....................................TGATTGTCCAAACxCAATTCT.............................................................................	20	1	1.00	0.00	0.00	0.00	1.00
.............................................................................AGGGTTGCGACTGGGCATCTCC...................................	22	1	1.00	0.00	0.00	1.00	0.00
....................................TGATTTTCCAAACGCAATTC..............................................................................	20	1	1.00	0.00	0.00	0.00	1.00
....................................TCATTGTCCAAACGAAATTCTT............................................................................	22	1	1.00	0.00	0.00	0.00	1.00

droAna3

CA--AAA--TATTTTGGTTAATTCAATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGAATT-CAAATACTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATACGAATACAACGAAGAGAACCATTTC	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
.............................................................................AGGGTTGCGACTGGGCATCGCG...................................	22	1	77.00	2.00	59.00	16.00	0.00
....................................TGATTGTCCAAACGCAATTCTTG...........................................................................	23	1	43.00	2.00	26.00	15.00	0.00
....................................TGATTGTCCAAACGCAATTCT.............................................................................	21	1	43.00	1.00	29.00	13.00	0.00
....................................TGATTGTCCAAACGCAATTC..............................................................................	20	1	19.00	3.00	9.00	7.00	0.00
....................................TGATTGTCCAAACGCAATTCTT............................................................................	22	1	17.00	1.00	12.00	4.00	0.00
....................................TGATTGTCCAAACGCAATTCTTGT..........................................................................	24	1	10.00	0.00	6.00	4.00	0.00
....................................TGATTGTCCAAACGCAATT...............................................................................	19	1	10.00	1.00	8.00	1.00	0.00
.............................................................................AGGGTTGCGACTGGGCATCGC....................................	21	1	3.00	0.00	3.00	0.00	0.00
............................................................................AAGGGTTGCGACTGGGCATCGC....................................	22	1	3.00	0.00	3.00	0.00	0.00
....................................TGATTGTCTAAACGCAATTCTTG...........................................................................	23	1	3.00	0.00	2.00	1.00	0.00
....................................TGATTGTCCAAACGAAATT...............................................................................	19	1	2.00	0.00	2.00	0.00	0.00
.............................................................................AGGGTTTCGACTGGGCATCGCG...................................	22	1	2.00	0.00	2.00	0.00	0.00
.............................................................................AGGGTTGCGACTGGGCATAGCG...................................	22	1	2.00	0.00	2.00	0.00	0.00
....................................TGATTGTCCAAACxCAATTCTTG...........................................................................	22	1	2.00	0.00	2.00	0.00	0.00
....................................TGATTTTCCAAACGCAATTCTTG...........................................................................	23	1	1.00	0.00	1.00	0.00	0.00
....................................TGATTCTCCAAACGCAATTC..............................................................................	20	1	1.00	0.00	1.00	0.00	0.00
....................................TGATTGACCAAACGCAATTCT.............................................................................	21	1	1.00	0.00	0.00	1.00	0.00
....................................TGACTGTCCAAACGCAATTCT.............................................................................	21	1	1.00	0.00	1.00	0.00	0.00
.......................................................................................................AAAATACGAACACAACGAA............	19	1	1.00	0.00	0.00	0.00	1.00
....................................TGATTGTCCAAACGCAATGCTGG...........................................................................	23	1	1.00	0.00	0.00	1.00	0.00
.............................................................................AGTGTTGCGACTGGGCATCGC....................................	21	1	1.00	0.00	1.00	0.00	0.00
....................................TGATTGCCCAAACGCAATTCT.............................................................................	21	1	1.00	0.00	0.00	1.00	0.00
.............................................................................AGGGTTGCGACTGGGCATCGAG...................................	22	1	1.00	0.00	1.00	0.00	0.00
....................................TGATTGTCCAACCGCAATTCTT............................................................................	22	1	1.00	0.00	0.00	1.00	0.00
.............................................................................AGGGTTGCGACTGGGCATCACG...................................	22	1	1.00	1.00	0.00	0.00	0.00
....................................TGGTTGTCCAAACGCAAT................................................................................	18	1	1.00	0.00	0.00	1.00	0.00
....................................AGATTGTCCAAACGCAATTCTTGT..........................................................................	24	1	1.00	0.00	0.00	1.00	0.00
.............................................................................AGAGTTGCGACTGGGCATCGC....................................	21	1	1.00	0.00	0.00	1.00	0.00
.............................................................................GGGGTTGCGACTGGGCATCGCG...................................	22	1	1.00	0.00	1.00	0.00	0.00
.....................................TGTTGTCCAAACGCAATTCTTG...........................................................................	22	1	1.00	0.00	1.00	0.00	0.00
.............................................................................AGGGTTGAGACTGGGCATCGCG...................................	22	1	1.00	0.00	1.00	0.00	0.00
....................................TGATTGTCAAAACGCAATTCTTGT..........................................................................	24	1	1.00	0.00	1.00	0.00	0.00
.............................................................................CGGGTTGCGACTGGGCCTCGCG...................................	22	1	1.00	0.00	0.00	1.00	0.00
....................................TGATTGTCCAAACGCAATTCTCG...........................................................................	23	1	1.00	0.00	0.00	1.00	0.00
....................................TGATTGTCCAAACGAAATTCT.............................................................................	21	1	1.00	0.00	1.00	0.00	0.00
.....................................GATTGTCCAAACGCAATTC..............................................................................	19	1	1.00	0.00	1.00	0.00	0.00
.......................................................................................CTGGGCATCGGGGTTCGA.............................	18	1	1.00	0.00	0.00	1.00	0.00
....................................TGATTGTCCAAGCGCAATTCT.............................................................................	21	1	1.00	0.00	0.00	1.00	0.00
....................................TGATTGTCCAAACGCAATTCCTG...........................................................................	23	1	1.00	0.00	1.00	0.00	0.00
....................................TGATTGTCCGAACGCAATTC..............................................................................	20	1	1.00	0.00	1.00	0.00	0.00
.........................................................................................GTGCATCxCGGCTCGAA............................	16	1	1.00	0.00	0.00	1.00	0.00
.............................................................................AGGGTTGCGACTGGGCTCCGCG...................................	22	1	1.00	0.00	0.00	1.00	0.00
............CTCGGTTAATTCAATTTT........................................................................................................	18	1	1.00	0.00	0.00	0.00	1.00
....................................TGATTGTCCAAACGCAATTT..............................................................................	20	1	1.00	0.00	1.00	0.00	0.00
....................................TGATTGGCCAAACGCAATTCT.............................................................................	21	1	1.00	0.00	0.00	1.00	0.00
.............................................................................AGGGATGCGACTGGGCATCGCG...................................	22	1	1.00	0.00	1.00	0.00	0.00
.............................................................................AGTGTTGCGACTGGGCATCGCG...................................	22	1	1.00	0.00	1.00	0.00	0.00
....................................TGATTGTCCAAACGCAATTTTTG...........................................................................	23	1	1.00	0.00	1.00	0.00	0.00

dp4

ATCAAAA--TAT-TTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-CCAATACTCAAGGGTTGTGACTGGACATCGCGGCTCGAAATAAGAATACAACCCAGCAACCAAAATC	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
.............................................................................AGGGTTGTGACTGGACATCGCG...................................	22	1	42.00	3.00	20.00	18.00	1.00
....................................TGATTGTCCAAACGCAATTCTTG...........................................................................	23	1	17.00	0.00	4.00	13.00	0.00
....................................TGATTGTCCAAACGCAATTCT.............................................................................	21	1	12.00	0.00	0.00	12.00	0.00
.............................................................................AGGGTTGTGACTGGACATCGC....................................	21	1	7.00	0.00	4.00	3.00	0.00
....................................TGATTGTCCAAACGCAATTCTT............................................................................	22	1	7.00	0.00	0.00	7.00	0.00
....................................TGATTGTCCAAACGCAATTC..............................................................................	20	1	7.00	0.00	0.00	7.00	0.00
....................................TGATTGTCCAAACGCAATTCTTGT..........................................................................	24	1	4.00	0.00	0.00	4.00	0.00
............................................................................AAGGGTTGTGACTGGACATCGC....................................	22	1	3.00	0.00	3.00	0.00	0.00
....................................TGATTGTCCAAACGCACTTCTTG...........................................................................	23	1	2.00	0.00	1.00	1.00	0.00
.............................................................................AGGGTTGTGACTGGACATCGCGT..................................	23	1	2.00	1.00	1.00	0.00	0.00
.............................................................................AGGGTTGTGACTGGACATCGTG...................................	22	1	2.00	0.00	2.00	0.00	0.00
.............................................................................AGGGATGTGACTGGACATCGCC...................................	22	1	1.00	0.00	0.00	1.00	0.00
.............................................................................AGGGTTGTGACTGGCCATCGCG...................................	22	1	1.00	0.00	1.00	0.00	0.00
......................TGGATTTTTAGCTATGTT..............................................................................................	18	1	1.00	0.00	0.00	1.00	0.00
.............................................................................AGGGTTGTGACTGGACATCGCC...................................	22	1	1.00	0.00	0.00	1.00	0.00
........................................TGTCCAAACGCAATTCTTG...........................................................................	19	1	1.00	0.00	1.00	0.00	0.00
.............................................................................AGGGTTGTGACTGGACATCACG...................................	22	1	1.00	0.00	0.00	1.00	0.00
....................................TGATTTTCCAAACGCAATTCTTG...........................................................................	23	1	1.00	1.00	0.00	0.00	0.00
....................................TAATTGTCCAAACGCAGTTCT.............................................................................	21	1	1.00	0.00	0.00	1.00	0.00
.............................................................................AGGGTTGTGACTGGACATCTCG...................................	22	1	1.00	0.00	0.00	1.00	0.00
.............................................................................AGGGTTGTGACTGGACCTCGCG...................................	22	1	1.00	0.00	1.00	0.00	0.00
.............................................................................AGGGTTGTGACTGGACATCG.....................................	20	1	1.00	0.00	0.00	1.00	0.00
.............................................................................AGGGTTGTGATTGGACATCGCG...................................	22	1	1.00	0.00	1.00	0.00	0.00
....................................TGATTGTCCAAACGAAATTCTTG...........................................................................	23	1	1.00	0.00	0.00	1.00	0.00
.............................................................................AGGGTTGTGACTGGGCATCGCG...................................	22	1	1.00	0.00	0.00	1.00	0.00

droPer1

ATCAAAA--TAT-TTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-CCAATACTCAAGGGTTGTGACTGGACATCGCGGCTCGAAATAAGAATACAACCCATCAACCAAAATC	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
.............................................................................AGGGTTGTGACTGGACATCGCG...................................	22	1	61.00	3.00	4.00	14.00	24.00	16.00
....................................TGATTGTCCAAACGCAATTCTTG...........................................................................	23	1	43.00	0.00	1.00	20.00	20.00	2.00
....................................TGATTGTCCAAACGCAATTCT.............................................................................	21	1	31.00	0.00	0.00	9.00	22.00	0.00
....................................TGATTGTCCAAACGCAATTCTT............................................................................	22	1	18.00	0.00	0.00	4.00	14.00	0.00
....................................TGATTGTCCAAACGCAATTC..............................................................................	20	1	8.00	0.00	0.00	2.00	6.00	0.00
.............................................................................AGGGTTGTGACTGGACATCGC....................................	21	1	7.00	0.00	1.00	3.00	3.00	0.00
....................................TGATTGTCCAAACGCAATTCTTGT..........................................................................	24	1	6.00	0.00	0.00	1.00	5.00	0.00
............................................................................AAGGGTTGTGACTGGACATCGC....................................	22	1	5.00	0.00	0.00	0.00	2.00	3.00
.........................................GTCCAAACGCAATTCTTG...........................................................................	18	1	3.00	0.00	0.00	0.00	0.00	3.00
....................................TGATTGTCCAAACGCAATT...............................................................................	19	1	3.00	0.00	0.00	1.00	2.00	0.00
.............................................................................AGGGCTGTGACTGGACATCGCG...................................	22	1	2.00	0.00	0.00	0.00	2.00	0.00
........................................TGTCCAAACGCAATTCTTG...........................................................................	19	1	2.00	0.00	2.00	0.00	0.00	0.00
....................................TGATTGTCCAAACGCACTTCT.............................................................................	21	1	2.00	0.00	0.00	0.00	2.00	0.00
.............................................................................AGGGTTGTGACTGGACATC......................................	19	1	2.00	0.00	0.00	1.00	0.00	1.00
.............................................................................AGGGTTGTGACTGGACATCGCT...................................	22	1	2.00	0.00	0.00	0.00	2.00	0.00
....................................TGATTGTCCAAACGCAGTTCTTG...........................................................................	23	1	1.00	0.00	0.00	0.00	1.00	0.00
....................................TGATTGTCTAAACGCAGTTCTTG...........................................................................	23	1	1.00	0.00	0.00	0.00	1.00	0.00
....................................TGAGTGTCCAAACGCAATTCTTG...........................................................................	23	1	1.00	0.00	0.00	0.00	1.00	0.00
....................................TGATTATCCAAACGCAATTCT.............................................................................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
....................................TGATTGTCCAAACGCCATAC..............................................................................	20	1	1.00	0.00	0.00	0.00	1.00	0.00
....................................TGATTGGCCAAACGCAATTCTTG...........................................................................	23	1	1.00	0.00	0.00	0.00	1.00	0.00
....................................TGATTGTCCAAACTCAATTC..............................................................................	20	1	1.00	0.00	0.00	0.00	1.00	0.00
....................................TGATTGTCCAAACGCAATTCTTT...........................................................................	23	1	1.00	0.00	0.00	1.00	0.00	0.00
....................................TGACTGTCCAAACGCAATTCTT............................................................................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
.............................................................................AGGGTGGTGACTGGACATCGCG...................................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
....................................TGATTGTCGAAACGCAATTC..............................................................................	20	1	1.00	0.00	0.00	0.00	1.00	0.00
.......................................TTGTCCAAACGCAATTTCTG...........................................................................	20	1	1.00	0.00	1.00	0.00	0.00	0.00
....................................TGATTGTCCGAACGCAATTCT.............................................................................	21	1	1.00	1.00	0.00	0.00	0.00	0.00
....................................TGATTGTCCAAACGCAATTCTTC...........................................................................	23	1	1.00	0.00	0.00	0.00	1.00	0.00
....................................TGATTGGCCAAACGCAATTCTTGT..........................................................................	24	1	1.00	0.00	0.00	0.00	1.00	0.00
.............................................................................AGGGTTGTGACTGGACACCCCG...................................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
.............................................................................AGGGTTGTGACTGGACATCGAG...................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
....................................GGATTGTCCAAACGCAATTCTT............................................................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
.............................................................................AGGGATGTGACTGGACATCGCG...................................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
....................................TGATTGTCCAAACGCTATTCTAG...........................................................................	23	1	1.00	0.00	0.00	0.00	1.00	0.00
.............................................................................AGGGTTGGGAATGGACATCGCG...................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
...................................CTGATTGTCCAAACGCAATTCTTGT..........................................................................	25	1	1.00	0.00	0.00	1.00	0.00	0.00
....................................TGATTGCCCAAACGCAATTC..............................................................................	20	1	1.00	0.00	0.00	1.00	0.00	0.00
.............................................................................AGGGTTGTGACTGGACATCCCG...................................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
........................................................................ACTCAAGGGTTGTGACTGGA..........................................	20	1	1.00	0.00	0.00	0.00	1.00	0.00
.......................................TTGTCCAAACGCAATTCTTG...........................................................................	20	1	1.00	0.00	0.00	1.00	0.00	0.00
....................................TGGTTGTCCAAACGCAATTCT.............................................................................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
.............................................................................AGGGTTGTGACTGAACATCGCG...................................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
.............................................................................AGGGTTGTGACTGGGCATCGCG...................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
....................................TGATTGTCCAAACGCAATTCGTG...........................................................................	23	1	1.00	0.00	0.00	1.00	0.00	0.00

droWil1

aacaaaa--TAT-TTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATTT-CAAATACTCAAGGGTTGCATCTGGGCATCGCGGCTCGAAATAAGAATACA-CCCAATAACCAAAGTG	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
....................................TGATTGTCCAAACGCAATTC..............................................................................	20	1	185.00	1.00	1.00	14.00	169.00
.............................................................................AGGGTTGCATCTGGGCATCGCG...................................	22	1	174.00	2.00	113.00	41.00	18.00
....................................TGATTGTCCAAACGCAATTCTTG...........................................................................	23	1	108.00	1.00	14.00	48.00	45.00
....................................TGATTGTCCAAACGCAATTCT.............................................................................	21	1	82.00	0.00	0.00	27.00	55.00
.............................................................................AGGGTTGCATCTGGGCATCGC....................................	21	1	21.00	1.00	15.00	4.00	1.00
....................................TGATTGTCCAAACGCAATTCTT............................................................................	22	1	20.00	0.00	1.00	12.00	7.00
....................................TTATTGTCCAAACGCAATTCTTG...........................................................................	23	1	18.00	0.00	0.00	1.00	17.00
............................................................................AAGGGTTGCATCTGGGCATCGC....................................	22	1	12.00	0.00	5.00	3.00	4.00
....................................TGATTGTCCAAACGCAATT...............................................................................	19	1	9.00	0.00	0.00	6.00	3.00
....................................TGATTGTCCAAACGCAATTCTTGT..........................................................................	24	1	6.00	0.00	1.00	5.00	0.00
....................................TGAxTGTCCAAACGCAATTCTTG...........................................................................	22	1	5.00	0.00	0.00	2.00	3.00
.............................................................................AGGGTTGCATCTGGGCATC......................................	19	1	4.00	0.00	0.00	4.00	0.00
......................................ATTGTCCAAACGCAATTCTTG...........................................................................	21	1	4.00	0.00	0.00	1.00	3.00
.......................................TTGTCCAAACGCAATTCTTG...........................................................................	20	1	4.00	0.00	0.00	2.00	2.00
.........................................GTCCAAACGCAATTCTTG...........................................................................	18	1	3.00	0.00	0.00	1.00	2.00
....................................TGATxxTCCAAACGCAATTCTTG...........................................................................	21	1	3.00	0.00	0.00	0.00	3.00
.............................................................................AGGGTTGCATCTGGGCATCG.....................................	20	1	3.00	0.00	0.00	1.00	2.00
........................................TGTCCAAACGCAATTCTTG...........................................................................	19	1	3.00	0.00	0.00	2.00	1.00
.............................................................................AGGGCTGCATCTGGGCATCGCG...................................	22	1	2.00	0.00	2.00	0.00	0.00
....................................TGATTGTCCAAACGCxATTCTTG...........................................................................	22	1	2.00	0.00	0.00	1.00	1.00
.............................................................................AGGGTTGCATATGGGCATCGCG...................................	22	1	2.00	0.00	0.00	2.00	0.00
....................................TGACTGTCCAAACGCAATTCTTG...........................................................................	23	1	2.00	0.00	0.00	2.00	0.00
....................................TGATTGTCCAAACGCATTC...............................................................................	19	1	2.00	0.00	0.00	2.00	0.00
.....................................TATTGTCCAAACGCAATTCTTG...........................................................................	22	1	2.00	0.00	0.00	0.00	2.00
....................................TGATTGTCCAAACGCAATTCC.............................................................................	21	1	2.00	0.00	0.00	0.00	2.00
.............................................................................AGGGTTGCATCTGGGAATCGCG...................................	22	1	1.00	0.00	0.00	1.00	0.00
....................................AGATTGTCCAAACGCAATTCTTG...........................................................................	23	1	1.00	0.00	0.00	0.00	1.00
.............................................................................AGGTTTGCATCTGGGCATCGCG...................................	22	1	1.00	0.00	0.00	1.00	0.00
.............................................................................AGGGTTTCATCTGGGCATCGCG...................................	22	1	1.00	0.00	1.00	0.00	0.00
....................................TGATTGGCCAAACGCAATTCTTG...........................................................................	23	1	1.00	0.00	0.00	0.00	1.00
....................................TGACTGTCCAAACGCAATTCTT............................................................................	22	1	1.00	0.00	0.00	0.00	1.00
....................................TGATTGTCCAAACGCAATTA..............................................................................	20	1	1.00	0.00	0.00	1.00	0.00
....................................TGATTGTCCAAACGCAATTCA.............................................................................	21	1	1.00	0.00	0.00	1.00	0.00
....................................TGATCGTCCAAACGCAATTCTTG...........................................................................	23	1	1.00	0.00	0.00	1.00	0.00
.............................................................................AGGGTTGCGACTGGGCATCGC....................................	21	1	1.00	0.00	0.00	1.00	0.00
.............................................................................AGGGTTGCGTCTGGGCATCGCG...................................	22	1	1.00	0.00	0.00	0.00	1.00
....................................TGATTGTCCAAACGCACTTCTTG...........................................................................	23	1	1.00	0.00	1.00	0.00	0.00
.............................................................................AGGGTTGAATCTGGGCATCGCG...................................	22	1	1.00	0.00	0.00	1.00	0.00
....................................TGAxTGTCCAAACGCAATTCT.............................................................................	20	1	1.00	0.00	0.00	0.00	1.00
....................................TGATTGTCCAAACCCAATTC..............................................................................	20	1	1.00	0.00	0.00	0.00	1.00
....................................TGATTGTCCAAATGCAATTCTTG...........................................................................	23	1	1.00	0.00	0.00	0.00	1.00
.......................................TTGTCCAAACGAAATTCTTG...........................................................................	20	1	1.00	0.00	0.00	1.00	0.00
....................................TGATTGTCCAAACGCAATTT..............................................................................	20	1	1.00	0.00	0.00	1.00	0.00
....................................TGATATTCCAAACGCAATTCTTG...........................................................................	23	1	1.00	0.00	0.00	0.00	1.00
....................................TGATTGTCCAAACTCAATTCTTG...........................................................................	23	1	1.00	0.00	0.00	1.00	0.00
.............................................................................AGGGTTGCATCTGGGCATAGCG...................................	22	1	1.00	0.00	0.00	1.00	0.00
....................................TGATTGTACAAACGCAATTCT.............................................................................	21	1	1.00	0.00	0.00	1.00	0.00
....................................TGATTGTCCAAACGCAATTCTCG...........................................................................	23	1	1.00	0.00	0.00	1.00	0.00
....................................TGATxxTCCAAACGCAATTCT.............................................................................	19	1	1.00	0.00	0.00	0.00	1.00
.............................................................................ACGGATGCATCTGGGCATCGCG...................................	22	1	1.00	0.00	1.00	0.00	0.00
.............................................................................AGGGTTGCATCTTGGCATCGCG...................................	22	1	1.00	0.00	1.00	0.00	0.00
....................................TGATTxTCCAAACGCAATTCTTG...........................................................................	22	1	1.00	0.00	0.00	0.00	1.00
.............................................................................AGGGTTGCATCTGGACATCGCG...................................	22	1	1.00	0.00	1.00	0.00	0.00
.............................................................................AGGGTTGCATCTGGGCACCGCG...................................	22	1	1.00	0.00	1.00	0.00	0.00
....................................TGATTGTCCAAACGTAATTCTTG...........................................................................	23	1	1.00	0.00	0.00	1.00	0.00
....................................TGATTGTCCAAACGCAAT................................................................................	18	1	1.00	0.00	0.00	0.00	1.00
....................................TGATTGTCCACACGCAATTCTTG...........................................................................	23	1	1.00	0.00	0.00	1.00	0.00
....................................TGATTGTCCAAACGCAATTCG.............................................................................	21	1	1.00	0.00	0.00	1.00	0.00
.............................................................................AGGGTTGCATCTGGGCCTCGCG...................................	22	1	1.00	0.00	1.00	0.00	0.00
....................................TTATTGTCCAAACGCAATTCT.............................................................................	21	1	1.00	0.00	0.00	1.00	0.00
.........................................TTCCAAACGCAATTCTTG...........................................................................	18	1	1.00	0.00	1.00	0.00	0.00
....................................TAATTGTCCAAACGCAATTCTTG...........................................................................	23	1	1.00	0.00	0.00	1.00	0.00
.............................................................................AGGGTTGCGACTGGGCATCGCG...................................	22	1	1.00	0.00	1.00	0.00	0.00
.............................................................................AGGGTTGCCTCTGGGCATCGCG...................................	22	1	1.00	0.00	0.00	1.00	0.00
.............................................................................AGGGTTGCATCTGGGCATCGCT...................................	22	1	1.00	0.00	0.00	0.00	1.00
....................................TGATTTTCCAAACGCAATTCT.............................................................................	21	1	1.00	0.00	0.00	0.00	1.00
....................................TGATTGTCCAAATGCAATTC..............................................................................	20	1	1.00	0.00	0.00	0.00	1.00
..............................................................................GGGTTGCATCTGGGCATCGCG...................................	21	1	1.00	0.00	1.00	0.00	0.00
.............................................................................AGTGTTGCATCTGGGCATAGCG...................................	22	1	1.00	0.00	0.00	1.00	0.00
....................................TGATTTTCCAAACGCAATTCTTG...........................................................................	23	1	1.00	0.00	0.00	0.00	1.00
....................................TGATTTTCCAAACGCAATTCTT............................................................................	22	1	1.00	0.00	0.00	1.00	0.00
....................................TGATTGTCCAGACGCAATTCTTG...........................................................................	23	1	1.00	0.00	1.00	0.00	0.00
.............................................................................AGGGTTGCATCTGGGCATCGCGT..................................	23	1	1.00	0.00	1.00	0.00	0.00
....................................TCATTGTCCAAACGCAATTCTTG...........................................................................	23	1	1.00	0.00	0.00	0.00	1.00
....................................TGATTTTCCAAAAGCAATTCTT............................................................................	22	1	1.00	0.00	0.00	0.00	1.00
....................................TGAxTCTCCAAACGCAATTCTT............................................................................	21	1	1.00	0.00	0.00	0.00	1.00
.............................................................................AGGGGTGCATCTGGGCATCGCG...................................	22	1	1.00	0.00	1.00	0.00	0.00
....................................CGATTGTCCAAACGCAATTCTTG...........................................................................	23	1	1.00	0.00	0.00	1.00	0.00
....................................TTATTGTCCAAACGCAATTC..............................................................................	20	1	1.00	0.00	0.00	0.00	1.00
....................................TGATTGTAAAAACGCAATTCTTG...........................................................................	23	1	1.00	0.00	0.00	1.00	0.00
....................................CGATTGTCCAAACGCAATTCT.............................................................................	21	1	1.00	0.00	0.00	1.00	0.00
....................................TGATTGTCCAAACGTAATTCTT............................................................................	22	1	1.00	0.00	0.00	0.00	1.00

droVir3

GTATAAA--TAT-TTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATTT-CAAATACTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATGAGAATCCAACCCA-CAACCAAAC--	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
....................................TGATTGTCCAAACGCAATTC..............................................................................	20	1	58.00	0.00	4.00	0.00	4.00	50.00
.............................................................................AGGGTTGCGACTGGGCATCGCG...................................	22	1	49.00	5.00	20.00	17.00	2.00	5.00
....................................TGATTGTCCAAACGCAATTCT.............................................................................	21	1	32.00	0.00	17.00	0.00	1.00	14.00
....................................TGATTGTCCAAACGCAATTCTTG...........................................................................	23	1	23.00	1.00	13.00	3.00	0.00	6.00
....................................TGATTGTCCAAACGCAATTCTT............................................................................	22	1	14.00	0.00	12.00	0.00	0.00	2.00
....................................TGATTGTCCAAACGCAATT...............................................................................	19	1	7.00	0.00	6.00	0.00	0.00	1.00
.............................................................................AGGGTTGCGACTGGGCATC......................................	19	1	6.00	0.00	0.00	0.00	0.00	6.00
....................................TGATTGTCCAAACGCAATTCTTGT..........................................................................	24	1	4.00	0.00	4.00	0.00	0.00	0.00
............................................................................AAGGGTTGCGACTGGGCATCGC....................................	22	1	2.00	0.00	1.00	0.00	1.00	0.00
.............................................................................AGGGTTGCGACTGGGCATCGCGG..................................	23	1	2.00	0.00	0.00	0.00	0.00	2.00
.....................................GATTGTCCAAACGCAATTC..............................................................................	19	1	1.00	0.00	0.00	0.00	0.00	1.00
.........................................GTCCAAACGCAATTCTTG...........................................................................	18	1	1.00	0.00	0.00	0.00	1.00	0.00
.............................................................................AGGATTGCGACTGGGCATCGCG...................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
....................................TGGTTGTCCAAACGCAATTCTTG...........................................................................	23	1	1.00	0.00	1.00	0.00	0.00	0.00
...........T-TAGGTCAATTCGATTTT........................................................................................................	18	1	1.00	0.00	0.00	1.00	0.00	0.00
.............................................................................AGGGGTGCGACTGGGCATCGCG...................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
.............................................................................AGGGTTGCGACTGGGCATCTCG...................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
....................................TTATTGTCCAAACGCAATTCTTG...........................................................................	23	1	1.00	0.00	0.00	0.00	0.00	1.00
....................................TGATTGTCCAAACGAAATTCT.............................................................................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
....................................TGCTTGTCCGAACGCAATTCT.............................................................................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
.............................................................................AGGGTGGCGACTGGGCATCGTG...................................	22	1	1.00	0.00	1.00	0.00	0.00	0.00
....................................TGATTGCCCAAACGCAATT...............................................................................	19	1	1.00	0.00	1.00	0.00	0.00	0.00
.....................................GATTGTCCAAACGCAATTCTTG...........................................................................	22	1	1.00	0.00	0.00	0.00	0.00	1.00
.............................................................................AGGGTTGCGACTTGGCATCTCG...................................	22	1	1.00	0.00	1.00	0.00	0.00	0.00
....................................TGATTGTCCAAACTCAATTCT.............................................................................	21	1	1.00	0.00	0.00	0.00	0.00	1.00
....................................TGATTGTCCAAACGCACTTC..............................................................................	20	1	1.00	0.00	1.00	0.00	0.00	0.00
.....................................GATTGGCCAAACGCAATTCTTG...........................................................................	22	1	1.00	0.00	1.00	0.00	0.00	0.00
.............................................................................AGGGTTGCGACTGGGTATCGCG...................................	22	1	1.00	0.00	1.00	0.00	0.00	0.00
.............................................................................AGGGTTGCGACGGGGCATCGCG...................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
....................................TGATTGTCCAAACGCAATTAT.............................................................................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
....................................CGATTCTCCAAACGCAATTCT.............................................................................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
.............................................................................AGGGTTGCGACTGGGCATCCCG...................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
.............................................................................AGGGTTGCGACCGGGCATCGCG...................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
.............................................................................AGGGTTGTGACTGGGCATCGCG...................................	22	1	1.00	0.00	1.00	0.00	0.00	0.00
.............................................................................AGGGTGGCGACTGGGCATCGCG...................................	22	1	1.00	0.00	1.00	0.00	0.00	0.00
....................................TGATTGTCCAAACGCAATTCG.............................................................................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
....................................GGATTGTCCAAACGCAATTC..............................................................................	20	1	1.00	0.00	0.00	0.00	1.00	0.00
....................................TGATTATCCAAACGCAATTCTTG...........................................................................	23	1	1.00	0.00	1.00	0.00	0.00	0.00
.............................................................................AGTGTTGCGACTGGGCATCGCG...................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
.............................................................................AGGGTTGCGACTGGGCATTGCG...................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
.....................................TATTGTCCAAACGCAATTCTTG...........................................................................	22	1	1.00	0.00	0.00	0.00	0.00	1.00
.............................................................................AGGGTTGCGACTGGGCATCGAG...................................	22	1	1.00	0.00	1.00	0.00	0.00	0.00
.............................................................................AGGGTTGCGACTGGGCATCGCC...................................	22	1	1.00	0.00	1.00	0.00	0.00	0.00
.............................................................................AGGGTTGCGACGGGGCATTGCG...................................	22	1	1.00	0.00	1.00	0.00	0.00	0.00
.............................................................................AGGGTTGCGACTTGGCATCGCG...................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
.............................................................................AGGGTTGCGACTGGGCATAGCG...................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
....................................TGATTGTCCAAACACAATTCT.............................................................................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
.............................................................................AGGGTTGCGACTGGGCATCACGT..................................	23	1	1.00	0.00	0.00	1.00	0.00	0.00
....................................TGATTGTCCAAACGCAAATCCTG...........................................................................	23	1	1.00	0.00	1.00	0.00	0.00	0.00
....................................TGATTGTCCAAACGCAACTCT.............................................................................	21	1	1.00	1.00	0.00	0.00	0.00	0.00
.............................................................................AGGGTTGCGACTGGGCATCTCC...................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
.......................................TTGTCCAAACGCAATTCTTG...........................................................................	20	1	1.00	0.00	0.00	0.00	0.00	1.00

droMoj3

ACAAACATATAT-TTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATTTTTAAATACTCAAGGGTTGCATCTGGGCATCGCGGCTCGAAATGAGAATCCAACACA-AAGCCaaa--a	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
....................................TGATTGTCCAAACGCAATTCTTG...........................................................................	23	1	54.00	0.00	28.00	26.00	0.00
....................................TGATTGTCCAAACGCAATTCT.............................................................................	21	1	48.00	1.00	27.00	19.00	1.00
.............................................................................AGGGTTGCATCTGGGCATCGCG...................................	22	1	23.00	1.00	7.00	6.00	9.00
....................................TGATTGTCCAAACGCAATTCTT............................................................................	22	1	14.00	0.00	10.00	4.00	0.00
....................................TGATTGTCCAAACGCAATTC..............................................................................	20	1	12.00	0.00	5.00	7.00	0.00
....................................TGATTGTCCAAACGCAATTCTTGT..........................................................................	24	1	7.00	0.00	4.00	2.00	1.00
....................................TGATTGTCCAAACGCAATT...............................................................................	19	1	4.00	0.00	2.00	2.00	0.00
.............................................................................AGGGTTGCATCTGGGCATCGC....................................	21	1	4.00	0.00	0.00	3.00	1.00
..........................................TCCAAACGCAATTCTTGT..........................................................................	18	1	1.00	0.00	1.00	0.00	0.00
....................................TGATTGTCCACACGCAATTC..............................................................................	20	1	1.00	0.00	1.00	0.00	0.00
....................................TGATTGTCCAAACGAAATTCTTT...........................................................................	23	1	1.00	0.00	0.00	1.00	0.00
....................................TGATTGTCCAAACGCCATTCTT............................................................................	22	1	1.00	0.00	0.00	1.00	0.00
....................................TGATTGTCCAAACGCACTT...............................................................................	19	1	1.00	0.00	0.00	1.00	0.00
....................................TGATTGTCCAAACGCGATTCTT............................................................................	22	1	1.00	0.00	1.00	0.00	0.00
....................................TGATTGTCCAGACGCAATTCTTG...........................................................................	23	1	1.00	0.00	0.00	1.00	0.00
....................................TGATTGTCCAAACGCACTTCT.............................................................................	21	1	1.00	0.00	1.00	0.00	0.00
....................................TGATTGTCCAAACGCAGTTCT.............................................................................	21	1	1.00	0.00	1.00	0.00	0.00
....................................TGATTGTCCAAACGCAATTCTTT...........................................................................	23	1	1.00	0.00	1.00	0.00	0.00
....................................TGATTGTCCAAACGCACTTCTTG...........................................................................	23	1	1.00	0.00	0.00	1.00	0.00
.............................................................................AGGGTTGCATCTGCGCCTCGCG...................................	22	1	1.00	0.00	0.00	1.00	0.00
....................................TGATTGTCCAAACGCCATTCTTG...........................................................................	23	1	1.00	0.00	0.00	1.00	0.00
.............................................................................AGGGTTGCATCTGGGCATCG.....................................	20	1	1.00	0.00	1.00	0.00	0.00
....................................CGATTGTCCAAACGCAATTCT.............................................................................	21	1	1.00	0.00	1.00	0.00	0.00
....................................TGACTGTCCAAACGCAATTCT.............................................................................	21	1	1.00	0.00	0.00	1.00	0.00
....................................TGATTGTCCAAACGCAATGCTTG...........................................................................	23	1	1.00	0.00	1.00	0.00	0.00
....................................GGATTGTCCAAACGCATTTCT.............................................................................	21	1	1.00	0.00	1.00	0.00	0.00
....................................TGATTGTCCAAACGCGATTCTTGT..........................................................................	24	1	1.00	0.00	0.00	1.00	0.00
.............................................................................AGGGTTGCATCTGGTCATCGCG...................................	22	1	1.00	0.00	1.00	0.00	0.00
....................................TGATTGTCCAAGCGCAATTCT.............................................................................	21	1	1.00	0.00	1.00	0.00	0.00
....................................TGAGTGTTCAAACGCAATTCTT............................................................................	22	1	1.00	0.00	1.00	0.00	0.00
....................................TGATTGTCCAGACGCAATTCT.............................................................................	21	1	1.00	0.00	1.00	0.00	0.00

droGri2

A--CAAA--CAT-TTGGTGAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATTT-CAAAAACTCAAGGGTTGCATCTGGGCATCGCGGCTCGAAATGAGAATACAACACAAAAATCAAA--A	Size	Hit Count	Total Norm	V109 Male body
.............................................................................AGGGTTGCATCTGGGCATCGCG...................................	22	1	3.00	3.00

12-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droAna3	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image

20-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droEug1	droBia1	droTak1	droEle1	droRho1	droFic1	droKik1	droAna3	droBip1	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image