dme-mir-190- Best orthologs

dme-mir-190	chr3L:8564899-8564998 +	Known_mirbase
[View on miRBase]	[View on UCSC Genome Browser {Cornell Mirror}]	intron

Legend:

   mature strand at position 8564922-8564942
   star strand at position 8564963-8564984
   mutations
   read mismatches

20-way Fast Statistical Aligner (FSA) re-alignment

Visually pleasing best hits from LASTZ and MAF

Species	Coordinate	Source	Confidence	Alignment
dm3	chr3L:8564884-8565013 +		1	ACTT---GCC------------------------------------------C------------TTCAAAA---------C-GAACT-----------AA-----------TTGATGGTTCCAGTGAGATATGTTTGATATTCTTGGTTGTTTCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCG---CC-AATCTACTAAAACA-------
droSim1	chr3L:8005898-8006027 +	LASTZ	1	ACTT---GCC------------------------------------------C------------TTCAAAA---------C-GAACT-----------AA-----------TTGATGGTTCCAGTGAGATATGTTTGATATTCTTGGTTGTATCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCG---CC-AATCTACTAAAACA-------
droSec1	super_0:844136-844265 +	LASTZ	1	ACTT---GCC------------------------------------------C------------TTCAAAA---------T-GAACT-----------AA-----------TTGATGGTTCCAGTGAGATATGTTTGATATTCTTGGTTGTTTCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCG---CC-AATCTACTAAAACA-------
droYak2	chr3L:3348658-3348787 -	LASTZ	1	ACTA---GCC------------------------------------------C------------TTCAAAA---------C-GAACT-----------AA-----------TTGATGGTTCCAGTGAGATATGTTTGATATTCTTGGTTGTTTCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCG---CC-AATCTACTAAAACA-------
droEre2	scaffold_4784:5482466-5482595 -	LASTZ	1	ACTA---GCC------------------------------------------C------------TTCAAAT---------C-GAACT-----------AA-----------TTGATGGTTCCAGTGAGATATGTTTGATATTCTTGGTTGTTTCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTAGCCTTCG---CC-AATCTACTAAAACA-------
droEug1	scf7180000409524:96530-96659 -	LASTZ	4	ACTA---GTC------------------------------------------C------------CTCAAAA---------C-GAACT-----------AA-----------TTGATGGTTCCAGTGAGATATGTTTGATATTCTTGGTTGTTTCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCG---CC-AATCTACTAAAAAA-------
droBia1	scf7180000302428:10499125-10499254 +	LASTZ	4	ACTA---GCC------------------------------------------C------------TTCAAAA---------C-GAACT-----------AA-----------TTGATGGTTCCAGTGAGATATGTTTGATATTCTTGGTTGTTTCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCG---CC-AATCTACTAAAACA-------
droTak1	scf7180000414445:150042-150172 -	LASTZ	4	ACCA---GCC------------------------------------------C------------TTCAAAA---------C-GAACT-----------AA-----------TTGATGGTTCCAGTGAGATATGTTTGATATTCTTGGTTGTTTCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCG---CTAAATCTACTAAAACA-------
droEle1	scf7180000491268:124838-124968 -	LASTZ	4	ACTA---GTC------------------------------------------C------------TTCAAAA---------C-CAACT-----------AA-----------TTGATGGTTCCAGTGAGATATGTTTGATATTCTTGGTTGTTTCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCG---CC-AATCTACTAAAACA------A
droRho1	scf7180000779204:207656-207785 +	LASTZ	4	ACTA---GTC------------------------------------------C------------TTCAAAA---------C-AAACT-----------AA-----------TTGATGGTTCCAGTGAGATATGTTTGATATTCTTGGTTGTTTCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCG---CC-AATCTACTAAAACA-------
droFic1	scf7180000453833:743441-743570 +	LASTZ	4	ACTA---GTC------------------------------------------C------------CTCAAAA---------C-GAACT-----------AA-----------TTGATGGTTCCAGTGAGATATGTTTGATATTCTTGGTTGTTACATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCG---CC-AATCTACTAAAACA-------
droKik1	scf7180000302474:426003-426134 -	LASTZ	4	ACTCCACG-C------------------------------------------T------------CTCAAAA---------C-GAACT-----------AA-----------TTGATGGCTCCAGTGAGATATGTTTGATATTCTTGGTTGTTACATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGGCCCTCG---CC-AATCTACTAAACCT-------
droAna3	scaffold_13337:8074872-8075002 -	LASTZ	1	ACTC---GCC------------------------------------------T------------CTCCAAA---------CACAACT-----------AA-----------TTGATGGTTCCAGTGAGATATGTTTGATATTCTTGGTTGTTACATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACTCTCG---CC-AATCTACTAAAATA-------
droBip1	scf7180000396541:230884-231015 -	LASTZ	4	ACTC---GCC------------------------------------------CT-----------CTCGAAA---------CCAAACT-----------AA-----------TTGAGGCTTCCAGTGAGATATGTTTGATATTCTTGGTTGTTTCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCG---CC-AATCTACTAAACTT-------
dp4	chrXR_group3a:147689-147845 -	LASTZ	1	ACTA---GTT-----------------------AACC------CTAA-----CTCTCATCTGCCCACAAA--CCAACCCAAC-GAACT-----------AA-----------TTGGGGATTCCAGTGAGATATGTTTGATATTCTTGGTTGTTACATTCAAGAGTTCACCCAGGAATCAAACATATTATTACTGTGATACCCG---GA-AATCTACTAAACCC-------
droPer1	super_23:151050-151206 -	LASTZ	1	ACTA---GTT-----------------------AACC------CTAA-----CTCTCATCTGCCCACAAA--CCAACCCAAC-GAACT-----------AA-----------TTGGGGATTCCAGTGAGATATGTTTGATATTCTTGGTTGTTACATTCAAGAGTTCACCCAGGAATCAAACATATTATTACTGTGATACCCG---GA-AATCTACTAAACCC-------
droWil1	scaffold_180949:5214317-5214457 +	LASTZ	1	ACTT---GCC------------------------------------------CTCTCATCTGCCCACAAAAA---------C-GAACT-----------AA-----------TTGATGGTCCCAGTGAGATATGTTTGATATTCTTGGTTGTTACATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGATCGTCG---G--AATCTACTAAAAAC-------
droVir3	scaffold_13049:6215347-6215479 +	LASTZ	1	AC-----------------------------------------------------------------CAAAT---------C-AAACT-----------ACCCCCCACTCATCTAATGATTCCAGTAAGATATGTTTGATATTCTTGGTTGTTACATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGATTGTTG---AA-ACTCTACTAAACCA-------
droMoj3	scaffold_6680:4536880-4537026 +	LASTZ	1	AGC-------------------------------------------------C------------ACCAAAATCAACC-----AAACTACCTATCCACTAC------CTCATCTAACGATTCCAGTGAGATATGTTTGATATTCTTGGTTGTTACATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGA---TCGCTTAA-ACTCTACTAAAA-A-------
droGri2	scaffold_15072:36258-36427 +	LASTZ	1	ACTA---CCAATAAAATAAAAATCCAACCAATCAACCAACCAACCAACTACCCA-----------------------------------------------------CTCATCTAATGATTCCAGTGAGATATGTTTGATATTCTTGGTTGTTACATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGATTGTTG---AA-ACTCTACTAAAAACAAATCAA

Legend

0- The ortholog is absent. A better synthenic sequence candidate could not be found.
1- Reads w/ good pileup on mature and star strand & folds into hairpin structure.
2- Reads w/ good pileup on mature and star strand BUT does not fold into hairpin structure.
3- Sporadic reads & folds into a hairpin structure.
4- No reads but folds into a hairpin structure.
5- Ortholog is confident but miRNA appears absent (no reads and does not fold into a hairpin)

Re-alignment after removal of non-confident orthologs

Species	Alignment
dm3	ACTT---GCC------------------------------------------C------------TTCAAAA---------C-GAACT-----------AA-----------TTGATGGTTCCAGTGAGATATGTTTGATATTCTTGGTTGTTTCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCG---CC-AATCTACTAAAACA-------
droSim1	ACTT---GCC------------------------------------------C------------TTCAAAA---------C-GAACT-----------AA-----------TTGATGGTTCCAGTGAGATATGTTTGATATTCTTGGTTGTATCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCG---CC-AATCTACTAAAACA-------
droSec1	ACTT---GCC------------------------------------------C------------TTCAAAA---------T-GAACT-----------AA-----------TTGATGGTTCCAGTGAGATATGTTTGATATTCTTGGTTGTTTCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCG---CC-AATCTACTAAAACA-------
droYak2	ACTA---GCC------------------------------------------C------------TTCAAAA---------C-GAACT-----------AA-----------TTGATGGTTCCAGTGAGATATGTTTGATATTCTTGGTTGTTTCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCG---CC-AATCTACTAAAACA-------
droEre2	ACTA---GCC------------------------------------------C------------TTCAAAT---------C-GAACT-----------AA-----------TTGATGGTTCCAGTGAGATATGTTTGATATTCTTGGTTGTTTCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTAGCCTTCG---CC-AATCTACTAAAACA-------
droEug1	ACTA---GTC------------------------------------------C------------CTCAAAA---------C-GAACT-----------AA-----------TTGATGGTTCCAGTGAGATATGTTTGATATTCTTGGTTGTTTCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCG---CC-AATCTACTAAAAAA-------
droBia1	ACTA---GCC------------------------------------------C------------TTCAAAA---------C-GAACT-----------AA-----------TTGATGGTTCCAGTGAGATATGTTTGATATTCTTGGTTGTTTCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCG---CC-AATCTACTAAAACA-------
droTak1	ACCA---GCC------------------------------------------C------------TTCAAAA---------C-GAACT-----------AA-----------TTGATGGTTCCAGTGAGATATGTTTGATATTCTTGGTTGTTTCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCG---CTAAATCTACTAAAACA-------
droEle1	ACTA---GTC------------------------------------------C------------TTCAAAA---------C-CAACT-----------AA-----------TTGATGGTTCCAGTGAGATATGTTTGATATTCTTGGTTGTTTCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCG---CC-AATCTACTAAAACA------A
droRho1	ACTA---GTC------------------------------------------C------------TTCAAAA---------C-AAACT-----------AA-----------TTGATGGTTCCAGTGAGATATGTTTGATATTCTTGGTTGTTTCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCG---CC-AATCTACTAAAACA-------
droFic1	ACTA---GTC------------------------------------------C------------CTCAAAA---------C-GAACT-----------AA-----------TTGATGGTTCCAGTGAGATATGTTTGATATTCTTGGTTGTTACATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCG---CC-AATCTACTAAAACA-------
droKik1	ACTCCACG-C------------------------------------------T------------CTCAAAA---------C-GAACT-----------AA-----------TTGATGGCTCCAGTGAGATATGTTTGATATTCTTGGTTGTTACATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGGCCCTCG---CC-AATCTACTAAACCT-------
droAna3	ACTC---GCC------------------------------------------T------------CTCCAAA---------CACAACT-----------AA-----------TTGATGGTTCCAGTGAGATATGTTTGATATTCTTGGTTGTTACATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACTCTCG---CC-AATCTACTAAAATA-------
droBip1	ACTC---GCC------------------------------------------CT-----------CTCGAAA---------CCAAACT-----------AA-----------TTGAGGCTTCCAGTGAGATATGTTTGATATTCTTGGTTGTTTCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCG---CC-AATCTACTAAACTT-------
dp4	ACTA---GTT-----------------------AACC------CTAA-----CTCTCATCTGCCCACAAA--CCAACCCAAC-GAACT-----------AA-----------TTGGGGATTCCAGTGAGATATGTTTGATATTCTTGGTTGTTACATTCAAGAGTTCACCCAGGAATCAAACATATTATTACTGTGATACCCG---GA-AATCTACTAAACCC-------
droPer1	ACTA---GTT-----------------------AACC------CTAA-----CTCTCATCTGCCCACAAA--CCAACCCAAC-GAACT-----------AA-----------TTGGGGATTCCAGTGAGATATGTTTGATATTCTTGGTTGTTACATTCAAGAGTTCACCCAGGAATCAAACATATTATTACTGTGATACCCG---GA-AATCTACTAAACCC-------
droWil1	ACTT---GCC------------------------------------------CTCTCATCTGCCCACAAAAA---------C-GAACT-----------AA-----------TTGATGGTCCCAGTGAGATATGTTTGATATTCTTGGTTGTTACATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGATCGTCG---G--AATCTACTAAAAAC-------
droVir3	AC-----------------------------------------------------------------CAAAT---------C-AAACT-----------ACCCCCCACTCATCTAATGATTCCAGTAAGATATGTTTGATATTCTTGGTTGTTACATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGATTGTTG---AA-ACTCTACTAAACCA-------
droMoj3	AGC-------------------------------------------------C------------ACCAAAATCAACC-----AAACTACCTATCCACTAC------CTCATCTAACGATTCCAGTGAGATATGTTTGATATTCTTGGTTGTTACATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGA---TCGCTTAA-ACTCTACTAAAA-A-------
droGri2	ACTA---CCAATAAAATAAAAATCCAACCAATCAACCAACCAACCAACTACCCA-----------------------------------------------------CTCATCTAATGATTCCAGTGAGATATGTTTGATATTCTTGGTTGTTACATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGATTGTTG---AA-ACTCTACTAAAAACAAATCAA

20-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droEug1	droBia1	droTak1	droEle1	droRho1	droFic1	droKik1	droAna3	droBip1	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image

Small RNA-seq read pileup

Species

Alignment

droSim1

ACTT---GCC------------------------------------------C------------TTCAAAA---------C-GAACT-----------AA-----------TTGATGGTTCCAGTGAGATATGTTTGATATTCTTGGTTGTATCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCG---CC-AATCTACTAAAACA-------	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
...............................................................................................................................AGATATGTTTGATATTCTTGGTTG...............................................................................	24	1	16497.00	218.00	6691.00	1807.00	7781.00
...............................................................................................................................AGATATGTTTGATATTCTTGGTT................................................................................	23	1	1423.00	8.00	1002.00	176.00	237.00
...............................................................................................................................AGATATGTTTGATATTCTTGGTTGT..............................................................................	25	1	1402.00	18.00	817.00	136.00	431.00
...............................................................................................................................AGATATGTTTGATATTCTTGGTGG...............................................................................	24	1	757.00	0.00	233.00	101.00	423.00
...............................................................................................................................AGATATGTTTGATATTCTTGG..................................................................................	21	1	637.00	4.00	461.00	111.00	61.00
........................................................................................................................................................................CCCAGGAATCAAACATATTATTA.......................................	23	1	516.00	416.00	37.00	11.00	52.00
...............................................................................................................................AGATATGTTTGATATTCTTG...................................................................................	20	1	510.00	10.00	442.00	23.00	35.00
........................................................................................................................................................................CCCAGGAATCAAACATATTATT........................................	22	1	332.00	161.00	140.00	11.00	20.00
...............................................................................................................................AGATATGTTTGATATTCTTGGTTGC..............................................................................	25	1	221.00	0.00	138.00	26.00	57.00
...............................................................................................................................AGATATGTTTGATATTCTTGGTTGG..............................................................................	25	1	148.00	0.00	63.00	12.00	73.00
...............................................................................................................................AGATATGTTTGATATTCTTGGT.................................................................................	22	1	137.00	14.00	83.00	18.00	22.00
...............................................................................................................................AGATATTTTTGATATTCTTGGTTG...............................................................................	24	1	118.00	0.00	33.00	6.00	79.00
...............................................................................................................................ATATATGTTTGATATTCTTGGTTG...............................................................................	24	1	73.00	0.00	22.00	5.00	46.00
...............................................................................................................................AGATATGTTTGATATTCTT....................................................................................	19	1	66.00	0.00	62.00	4.00	0.00
...............................................................................................................................AGATATGTTTGATATTCT.....................................................................................	18	1	64.00	0.00	54.00	8.00	2.00
........................................................................................................................................................................CCCAGGAATCAAACATATTAT.........................................	21	1	56.00	4.00	46.00	3.00	3.00
...............................................................................................................................AGATATGTTTGATATTCTTGGTC................................................................................	23	1	44.00	0.00	34.00	2.00	8.00
...............................................................................................................................ACATATGTTTGATATTCTTGGTTG...............................................................................	24	1	43.00	0.00	17.00	4.00	22.00
...............................................................................................................................AGATATGTTTGATATTCTTGGTTGA..............................................................................	25	1	39.00	2.00	29.00	5.00	3.00
...............................................................................................................................AGATATxTTTGATATTCTTGGTTG...............................................................................	23	1	37.00	0.00	14.00	4.00	19.00
...............................................................................................................................AGATATGTTTGATATTCTTGGAC................................................................................	23	1	36.00	0.00	30.00	4.00	2.00
...............................................................................................................................AGATATGTTTGATATTCTTGGA.................................................................................	22	1	31.00	0.00	26.00	5.00	0.00
...............................................................................................................................AGATATGTTTGATATTCTTGGTTGAC.............................................................................	26	1	26.00	0.00	21.00	2.00	3.00
...............................................................................................................................AGATATCTTTGATATTCTTGGTTG...............................................................................	24	1	25.00	0.00	9.00	2.00	14.00
.....................................................................................................................................GTTTGATATTCTTGGTTG...............................................................................	18	1	22.00	9.00	1.00	7.00	5.00
...............................................................................................................................AGATATGTTTGATATTCTTGGG.................................................................................	22	1	20.00	0.00	8.00	7.00	5.00
........................................................................................................................................................................CCCAGGAATCAAACATATTA..........................................	20	1	19.00	11.00	7.00	1.00	0.00
...............................................................................................................................AGATATGTTTGATATTCTTGGTG................................................................................	23	1	18.00	0.00	17.00	1.00	0.00
.................................................................................................................................ATATGTTTGATATTCTTGGTTG...............................................................................	22	1	18.00	1.00	11.00	0.00	6.00
...............................................................................................................................GGATATGTTTGATATTCTTGGTTG...............................................................................	24	1	18.00	0.00	7.00	2.00	9.00
................................................................................................................................GATATGTTTGATATTCTTGGTTG...............................................................................	23	1	17.00	1.00	7.00	2.00	7.00
...............................................................................................................................AGAGATGTTTGATATTCTTGGTTG...............................................................................	24	1	17.00	0.00	8.00	2.00	7.00
...............................................................................................................................AGATATGTTTGATATTCTTGGTA................................................................................	23	1	16.00	0.00	13.00	1.00	2.00
...............................................................................................................................AGATATGTTTGATATTCTTGGC.................................................................................	22	1	16.00	0.00	11.00	2.00	3.00
...............................................................................................................................AGATATGCTTGATATTCTTGGTTG...............................................................................	24	1	15.00	0.00	3.00	2.00	10.00
...............................................................................................................................AGATATGTTTGATATTCTTGGTTT...............................................................................	24	1	15.00	11.00	3.00	0.00	1.00
...................................................................................................................................ATGTTTGATATTCTTGGTTG...............................................................................	20	1	15.00	2.00	8.00	2.00	3.00
..................................................................................................................................TATGTTTGATATTCTTGGTTG...............................................................................	21	1	14.00	0.00	3.00	3.00	8.00
...............................................................................................................................AGATATGTTTGATATTCTTGGCTG...............................................................................	24	1	14.00	0.00	4.00	2.00	8.00
...............................................................................................................................AGATATGTTTGATATTCTTTGTTG...............................................................................	24	1	14.00	9.00	4.00	0.00	1.00
...............................................................................................................................AGATGTGTTTGATATTCTTGGTTG...............................................................................	24	1	14.00	0.00	4.00	2.00	8.00
...............................................................................................................................AGGTATGTTTGATATTCTTGGTTG...............................................................................	24	1	13.00	1.00	6.00	2.00	4.00
.................................................................................................................................AGATTTTTGATATTCTTGGTTG...............................................................................	22	1	13.00	0.00	6.00	1.00	6.00
...............................................................................................................................AGATATGTTTGATATTCTTGGTTGTT.............................................................................	26	1	11.00	0.00	4.00	5.00	2.00
...............................................................................................................................AGATATGTTTGATATTCTTGGTCG...............................................................................	24	1	11.00	0.00	8.00	0.00	3.00
........................................................................................................................................................................CCCAGGAATCCAACATATTATTA.......................................	23	1	10.00	10.00	0.00	0.00	0.00
...............................................................................................................................AGATATGGTTGATATTCTTGGTTG...............................................................................	24	1	10.00	2.00	4.00	1.00	3.00
........................................................................................................................................................................CCCAGGAATCAAACATATTATTAA......................................	24	1	9.00	3.00	3.00	0.00	3.00
...............................................................................................................................AGATATGTTTGATATTCCTGGTTG...............................................................................	24	1	9.00	0.00	3.00	2.00	4.00
...............................................................................................................................AGATATGTTTTATATTCTTGGTTG...............................................................................	24	1	9.00	0.00	7.00	0.00	2.00
...............................................................................................................................AGATATGTTTGATATTCTTGGTTGTC.............................................................................	26	1	8.00	0.00	4.00	1.00	3.00
...............................................................................................................................AGATATGTTTGATATTTTTGGTTG...............................................................................	24	1	8.00	0.00	3.00	2.00	3.00
........................................................................................................................................................................CCCAGGAATCAAACATATT...........................................	19	1	8.00	2.00	6.00	0.00	0.00
.................................................................................................................................AGATGTTTGATATTCTTGGTTG...............................................................................	22	1	8.00	0.00	5.00	0.00	3.00
...............................................................................................................................AGATATGTTCGATATTCTTGGTTG...............................................................................	24	1	7.00	0.00	1.00	1.00	5.00
.........................................................................................................................................................................CCAGGAATCAAACATATTATT........................................	21	1	7.00	6.00	1.00	0.00	0.00
...............................................................................................................................AGATATGTTTxATATTCTTGGTTG...............................................................................	23	1	7.00	0.00	6.00	1.00	0.00
...............................................................................................................................AGATATTTTTGATATTCTTGGTGG...............................................................................	24	1	7.00	0.00	0.00	0.00	7.00
...............................................................................................................................AGATATTTTTGATATTCTTGGTTGT..............................................................................	25	1	6.00	0.00	4.00	2.00	0.00
...............................................................................................................................ATATATGTTTGATATTCTTG...................................................................................	20	1	6.00	0.00	6.00	0.00	0.00
...............................................................................................................................AGATATGTTTGGTATTCTTGGTTG...............................................................................	24	1	6.00	0.00	2.00	0.00	4.00
...............................................................................................................................AGATATGTTTCATATTCTTGGTTG...............................................................................	24	1	6.00	0.00	4.00	0.00	2.00
...............................................................................................................................AGATACGTTTGATATTCTTGGTTG...............................................................................	24	1	6.00	0.00	3.00	0.00	3.00
........................................................................................................................................................................CCCAGGAATCACACATATTATTA.......................................	23	1	6.00	6.00	0.00	0.00	0.00
...............................................................................................................................AGATATGTTxxATATTCTTGGTTG...............................................................................	22	1	6.00	0.00	0.00	1.00	5.00
.................................................................................................................................AGATGTTTGATATTCTTGGTT................................................................................	21	1	5.00	0.00	3.00	0.00	2.00
...............................................................................................................................AGATATGTTTGATATTCTTGGTTA...............................................................................	24	1	5.00	0.00	0.00	2.00	3.00
...............................................................................................................................AGATATGTTTGACATTCTTGGTTG...............................................................................	24	1	5.00	1.00	2.00	0.00	2.00
...................................................................................................................................ATGTTTGATATTCTTGGTT................................................................................	19	1	5.00	0.00	3.00	2.00	0.00
...............................................................................................................................ATATATGTTTGATATTCTTGGTT................................................................................	23	1	5.00	0.00	4.00	0.00	1.00
...............................................................................................................................AGATATGTTTGATATTCTCGGTTG...............................................................................	24	1	5.00	0.00	2.00	0.00	3.00
..............................................................................................................................CAGATATGTTTGATATTCTTGGTTG...............................................................................	25	1	5.00	1.00	2.00	0.00	2.00
...............................................................................................................................ATATATGTTTGATATTCTTGGTGG...............................................................................	24	1	4.00	0.00	1.00	1.00	2.00
...............................................................................................................................AGATATGTTTGATATTCTGG...................................................................................	20	1	4.00	0.00	3.00	1.00	0.00
........................................................................................................................................................................CACAGGAATCAAACATATTATTA.......................................	23	1	4.00	4.00	0.00	0.00	0.00
...............................................................................................................................AGATATGTTTGCTATTCTTGGTTG...............................................................................	24	1	4.00	1.00	0.00	0.00	3.00
...............................................................................................................................AGATATGTTTGATATTCTTGA..................................................................................	21	1	4.00	0.00	4.00	0.00	0.00
...............................................................................................................................AAATATGTTTGATATTCTTGGTTG...............................................................................	24	1	4.00	0.00	3.00	0.00	1.00
..................................................................................................................................TATGTTTGATATTCTTGGTT................................................................................	20	1	4.00	1.00	1.00	2.00	0.00
...............................................................................................................................AGATATGTTTGATATCCTTGGTTG...............................................................................	24	1	4.00	1.00	0.00	0.00	3.00
.........................................................................................................................................................................CCAGGAATCAAACATATTATTA.......................................	22	1	4.00	3.00	0.00	0.00	1.00
...............................................................................................................................AGATATGTTTGATGTTCTTGGTTG...............................................................................	24	1	4.00	0.00	1.00	0.00	3.00
...............................................................................................................................TGATATGTTTGATATTCTTGGTTG...............................................................................	24	1	4.00	0.00	2.00	1.00	1.00
...............................................................................................................................AGATATGTTTGATATTCTTGGGTG...............................................................................	24	1	4.00	1.00	2.00	0.00	1.00
...............................................................................................................................AGATATGTTTGATATTCTTGGTTC...............................................................................	24	1	4.00	0.00	1.00	2.00	1.00
...............................................................................................................................AGATATGTTTGATATTCC.....................................................................................	18	1	3.00	0.00	3.00	0.00	0.00
...............................................................................................................................AGATATGTTTGATACTCTTGGTTG...............................................................................	24	1	3.00	0.00	1.00	2.00	0.00
.................................................................................................................................AGATxTTTGATATTCTTGGTTG...............................................................................	21	1	3.00	0.00	0.00	0.00	3.00
...............................................................................................................................ATATATGTTTGATATTCTTGG..................................................................................	21	1	3.00	0.00	3.00	0.00	0.00
.................................................................................................................................AGATATTTGATATTCTTGGTTG...............................................................................	22	1	3.00	0.00	3.00	0.00	0.00
...............................................................................................................................AGATATGTTTGATATTCGTGG..................................................................................	21	1	3.00	0.00	0.00	2.00	1.00
...............................................................................................................................AGATATGTCTGATATTCTTGGTTG...............................................................................	24	1	3.00	0.00	2.00	0.00	1.00
...............................................................................................................................AGATATGxTTGATATTCTTGGTTG...............................................................................	23	1	3.00	0.00	2.00	0.00	1.00
...............................................................................................................................AGATATGTTTGATATTATTGGTTG...............................................................................	24	1	3.00	1.00	1.00	0.00	1.00
...............................................................................................................................AGATATGTTTAATATTCTTGGTTG...............................................................................	24	1	3.00	0.00	1.00	0.00	2.00
................................................................................................................................AATATGTTTGATATTCTTGGTTG...............................................................................	23	1	3.00	0.00	0.00	0.00	3.00
...............................................................................................................................AGATATGTTTGATATTCTTGT..................................................................................	21	1	3.00	0.00	3.00	0.00	0.00
...............................................................................................................................AGACATGTTTGATATTCTTGGTTG...............................................................................	24	1	3.00	0.00	1.00	0.00	2.00
...............................................................................................................................AGATATGTTTGATATTCTTGGTTGTCT............................................................................	27	1	3.00	0.00	0.00	1.00	2.00
.................................................................................................................................ATATGTTTGATATTCTTG...................................................................................	18	1	3.00	0.00	1.00	1.00	1.00
...............................................................................................................................AGATATGTTTCATATTCTTGGTTGT..............................................................................	25	1	3.00	0.00	1.00	0.00	2.00

droSec1

ACTT---GCC------------------------------------------C------------TTCAAAA---------T-GAACT-----------AA-----------TTGATGGTTCCAGTGAGATATGTTTGATATTCTTGGTTGTTTCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCG---CC-AATCTACTAAAACA-------	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
........................................................................................................................................................................CCCAGGAATCAAACATATTATT........................................	22	1	557.00	39.00	133.00	385.00
........................................................................................................................................................................CCCAGGAATCAAACATATTATTA.......................................	23	1	533.00	26.00	302.00	205.00
...............................................................................................................................AGATATGTTTGATATTCTTGGTTG...............................................................................	24	1	163.00	24.00	86.00	53.00
...............................................................................................................................AGATATGTTTGATATTCTTGGTTGT..............................................................................	25	1	160.00	33.00	39.00	88.00
........................................................................................................................................................................CCCAGGAATCAAACATATTAT.........................................	21	1	90.00	4.00	7.00	79.00
........................................................................................................................................................................CCCAGGAATCAAACATATT...........................................	19	1	84.00	0.00	5.00	79.00
........................................................................................................................................................................CCCAGGAATCAAACATATTA..........................................	20	1	68.00	4.00	10.00	54.00
...............................................................................................................................AGATATGTTTGATATTCTTGG..................................................................................	21	1	42.00	5.00	14.00	23.00
...............................................................................................................................AGATATGTTTGATATTCTTGGT.................................................................................	22	1	35.00	8.00	4.00	23.00
...............................................................................................................................AGATATGTTTGATATTCTTGGTT................................................................................	23	1	31.00	5.00	10.00	16.00
...............................................................................................................................AGATATGTTTGATATTCTTG...................................................................................	20	1	25.00	0.00	5.00	20.00
...............................................................................................................................AGATATGTTTGATATTCTTGGTTGA..............................................................................	25	1	25.00	5.00	2.00	18.00
...............................................................................................................................AGATATGTTTGATATTCTT....................................................................................	19	1	17.00	0.00	1.00	16.00
........................................................................................................................................................................CCCAGGAATCAAACATATTATTAA......................................	24	1	10.00	1.00	3.00	6.00
.........................................................................................................................................................................CCAGGAATCAAACATATTATT........................................	21	1	8.00	1.00	2.00	5.00
...................................................................................................................................ATGTTTGATATTCTTGGTTG...............................................................................	20	1	8.00	4.00	1.00	3.00
.................................................................................................................................ATATGTTTGATATTCTTGGTTG...............................................................................	22	1	7.00	1.00	4.00	2.00
...............................................................................................................................AGATATGTTTGATATTCTTGT..................................................................................	21	1	7.00	1.00	2.00	4.00
.................................................................................................................................ATATGTTTGATATTCTTGGT.................................................................................	20	1	6.00	1.00	0.00	5.00
...............................................................................................................................ATATATGTTTGATATTCTTGGTTG...............................................................................	24	1	5.00	0.00	3.00	2.00
.........................................................................................................................................................................CCAGGAATCAAACATATTATTA.......................................	22	1	5.00	0.00	3.00	2.00
...............................................................................................................................AGATATGTTTGATATTCT.....................................................................................	18	1	5.00	0.00	0.00	5.00
........................................................................................................................................................................CCCAGGAATCAAACACATTATTA.......................................	23	1	4.00	0.00	4.00	0.00
...............................................................................................................................AGATATGTTTGATATTCTTGTTG................................................................................	23	1	4.00	0.00	3.00	1.00
........................................................................................................................................................................CCCAGGAATCAAACACATTATT........................................	22	1	4.00	1.00	1.00	2.00
...............................................................................................................................AGATATGTTTGATATTCTTTGTTG...............................................................................	24	1	4.00	0.00	2.00	2.00
.................................................................................................................................AGATGTTTGATATTCTTGGTTG...............................................................................	22	1	4.00	0.00	4.00	0.00
........................................................................................................................................................................CCCAGGAATCAAACATATAATT........................................	22	1	3.00	1.00	0.00	2.00
...............................................................................................................................AGATATGTTTGATATTCTTGGTTGAG.............................................................................	26	1	3.00	0.00	0.00	3.00
........................................................................................................................................................................CCCAGGAATCAAACCTATTATT........................................	22	1	3.00	0.00	0.00	3.00
........................................................................................................................................................................CTCAGGAATCAAACATATTATT........................................	22	1	3.00	0.00	2.00	1.00
.................................................................................................................................ATATGTTTGATATTCTTGG..................................................................................	19	1	3.00	0.00	3.00	0.00
....................................................................................................................................TGTTTGATATTCTTGGTTG...............................................................................	19	1	3.00	1.00	1.00	1.00

droYak2

ACTA---GCC------------------------------------------C------------TTCAAAA---------C-GAACT-----------AA-----------TTGATGGTTCCAGTGAGATATGTTTGATATTCTTGGTTGTTTCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCG---CC-AATCTACTAAAACA-------	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
...............................................................................................................................AGATATGTTTGATATTCTTGGTTG...............................................................................	24	1	2118.00	99.00	3.00	9.00	11.00	1996.00
........................................................................................................................................................................CCCAGGAATCAAACATATTATTA.......................................	23	1	246.00	200.00	6.00	14.00	11.00	15.00
...............................................................................................................................AGATATGTTTGATATTCTTGGTT................................................................................	23	1	193.00	4.00	0.00	3.00	2.00	184.00
........................................................................................................................................................................CCCAGGAATCAAACATATTATT........................................	22	1	190.00	100.00	15.00	13.00	28.00	34.00
...............................................................................................................................AGATATGTTTGATATTCTTGGTTGT..............................................................................	25	1	162.00	8.00	1.00	6.00	4.00	143.00
...............................................................................................................................AGATATGTTTGATATTCTTG...................................................................................	20	1	120.00	0.00	3.00	1.00	17.00	99.00
...............................................................................................................................AGATATGTTTGATATTCTTGG..................................................................................	21	1	101.00	6.00	1.00	0.00	6.00	88.00
...............................................................................................................................AGATATGTTTGATATTCTTGGTGG...............................................................................	24	1	83.00	0.00	0.00	0.00	0.00	83.00
........................................................................................................................................................................CCCAGGAATCAAACATATTAT.........................................	21	1	43.00	4.00	2.00	3.00	23.00	11.00
...............................................................................................................................AGATATGTTTGATATTCTTGGT.................................................................................	22	1	32.00	2.00	0.00	7.00	2.00	21.00
...............................................................................................................................AGATATTTTTGATATTCTTGGTTG...............................................................................	24	1	22.00	0.00	0.00	0.00	0.00	22.00
...............................................................................................................................AGATATGTTTGATATTCTT....................................................................................	19	1	18.00	0.00	5.00	0.00	4.00	9.00
........................................................................................................................................................................CCCAGGAATCAAACATATTA..........................................	20	1	14.00	6.00	2.00	0.00	3.00	3.00
...............................................................................................................................AGATATGTTTGATATTCTTGGTTGA..............................................................................	25	1	12.00	5.00	1.00	1.00	1.00	4.00
...............................................................................................................................AGATATGTTTGATATTCT.....................................................................................	18	1	10.00	1.00	1.00	0.00	2.00	6.00
...............................................................................................................................AGATATGTTTGATATTCTTGGTTGG..............................................................................	25	1	10.00	0.00	0.00	0.00	0.00	10.00
........................................................................................................................................................................CCCAGGAATCCAACATATTATTA.......................................	23	1	9.00	9.00	0.00	0.00	0.00	0.00
...............................................................................................................................AGATATGTTTGATATTCTTGGTTGC..............................................................................	25	1	9.00	0.00	0.00	0.00	0.00	9.00
...................................................................................................................................ATGTTTGATATTCTTGGTTG...............................................................................	20	1	9.00	3.00	0.00	2.00	1.00	3.00
...............................................................................................................................ACATATGTTTGATATTCTTGGTTG...............................................................................	24	1	7.00	0.00	0.00	0.00	0.00	7.00
...............................................................................................................................AGATATGTTTGATATTCTTGGTTT...............................................................................	24	1	7.00	3.00	0.00	0.00	0.00	4.00
...............................................................................................................................AGATATxTTTGATATTCTTGGTTG...............................................................................	23	1	6.00	0.00	0.00	0.00	0.00	6.00
...............................................................................................................................AGATATGTTTGATATTCTTGGTC................................................................................	23	1	6.00	0.00	0.00	0.00	0.00	6.00
...............................................................................................................................ATATATGTTTGATATTCTTGGTTG...............................................................................	24	1	5.00	0.00	0.00	0.00	0.00	5.00
...............................................................................................................................AGATATGTTTGATATTCTTGT..................................................................................	21	1	5.00	0.00	1.00	0.00	3.00	1.00
...............................................................................................................................AGATATGTTTGCTATTCTTGGTTG...............................................................................	24	1	4.00	0.00	0.00	0.00	0.00	4.00
...............................................................................................................................AGGTATGTTTGATATTCTTGGTTG...............................................................................	24	1	4.00	1.00	0.00	0.00	0.00	3.00
........................................................................................................................................................................CCCAGGAATCAAACATATT...........................................	19	1	4.00	1.00	0.00	0.00	2.00	1.00
...............................................................................................................................AGATATGCTTGATATTCTTGGTTG...............................................................................	24	1	4.00	0.00	0.00	0.00	1.00	3.00
.................................................................................................................................ATATGTTTGATATTCTTGGTTG...............................................................................	22	1	3.00	0.00	0.00	0.00	0.00	3.00
........................................................................................................................................................................CCCAGGAATCAAACATATTATTAA......................................	24	1	3.00	0.00	1.00	1.00	1.00	0.00
.........................................................................................................................................................................CCAGGAATCAAACATATTATTA.......................................	22	1	3.00	2.00	0.00	0.00	0.00	1.00
.........................................................................................................................................................................CCAGGAATCAAACATATTATT........................................	21	1	3.00	2.00	0.00	0.00	0.00	1.00
...............................................................................................................................AGATATGTTTGATATTCTTTGTTG...............................................................................	24	1	3.00	2.00	0.00	0.00	0.00	1.00
...............................................................................................................................AGATATGTTTGATATTCTTGGTTGTT.............................................................................	26	1	3.00	1.00	0.00	0.00	1.00	1.00
...............................................................................................................................AGATATCTTTGATATTCTTGGTTG...............................................................................	24	1	3.00	0.00	0.00	0.00	0.00	3.00
...............................................................................................................................AGATATGTTTTATATTCTTGGTTG...............................................................................	24	1	3.00	0.00	1.00	0.00	0.00	2.00
...............................................................................................................................AGATATGTTTGATATTCTTGGA.................................................................................	22	1	3.00	0.00	0.00	0.00	0.00	3.00

droEre2

ACTA---GCC------------------------------------------C------------TTCAAAT---------C-GAACT-----------AA-----------TTGATGGTTCCAGTGAGATATGTTTGATATTCTTGGTTGTTTCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTAGCCTTCG---CC-AATCTACTAAAACA-------	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
........................................................................................................................................................................CCCAGGAATCAAACATATTATT........................................	22	1	997.00	45.00	3.00	0.00	949.00
........................................................................................................................................................................CCCAGGAATCAAACATATTATTA.......................................	23	1	847.00	94.00	1.00	0.00	752.00
...............................................................................................................................AGATATGTTTGATATTCTTGGTTG...............................................................................	24	1	179.00	35.00	6.00	0.00	138.00
........................................................................................................................................................................CCCAGGAATCAAACATATTAT.........................................	21	1	167.00	1.00	0.00	0.00	166.00
........................................................................................................................................................................CCCAGGAATCAAACATATTA..........................................	20	1	91.00	2.00	0.00	0.00	89.00
...............................................................................................................................AGATATGTTTGATATTCTTGGTTGT..............................................................................	25	1	86.00	2.00	2.00	0.00	82.00
...............................................................................................................................AGATATGTTTGATATTCTTGGT.................................................................................	22	1	71.00	2.00	10.00	0.00	59.00
........................................................................................................................................................................CCCAGGAATCAAACATATT...........................................	19	1	66.00	1.00	2.00	0.00	63.00
...............................................................................................................................AGATATGTTTGATATTCTTG...................................................................................	20	1	60.00	0.00	11.00	0.00	49.00
...............................................................................................................................AGATATGTTTGATATTCTTGG..................................................................................	21	1	43.00	2.00	6.00	0.00	35.00
...............................................................................................................................AGATATGTTTGATATTCTT....................................................................................	19	1	40.00	1.00	5.00	0.00	34.00
...............................................................................................................................AGATATGTTTGATATTCTTGGTT................................................................................	23	1	37.00	0.00	5.00	0.00	32.00
........................................................................................................................................................................CCCAGGAATCAAACATATTATTAA......................................	24	1	26.00	0.00	0.00	0.00	26.00
........................................................................................................................................................................CCAAGGAATCAAACATATTATT........................................	22	1	26.00	0.00	0.00	0.00	26.00
.........................................................................................................................................................................CCAGGAATCAAACATATTATT........................................	21	1	18.00	1.00	0.00	0.00	17.00
........................................................................................................................................................................CCAAGGAATCAAACATATTATTA.......................................	23	1	17.00	0.00	0.00	0.00	17.00
........................................................................................................................................................................ACCAGGAATCAAACATATTATT........................................	22	1	17.00	0.00	0.00	0.00	17.00
........................................................................................................................................................................CACAGGAATCAAACATATTATT........................................	22	1	16.00	0.00	0.00	0.00	16.00
........................................................................................................................................................................CCCAGTAATCAAACATATTATTA.......................................	23	1	15.00	0.00	0.00	0.00	15.00
ACTA---GCC------------------------------------------C------------TTAAAAT---------G-GA.................................................................................................................................................	18	1	15.00	12.00	0.00	0.00	3.00
.....................................................................................................................................GTTTGATATTCTTGGTTG...............................................................................	18	1	12.00	5.00	0.00	0.00	7.00
...............................................................................................................................AGATATGTTTGATATTCTTGGTTGA..............................................................................	25	1	12.00	3.00	0.00	0.00	9.00
........................................................................................................................................................................CCCAGGAATCAAACATATTATTC.......................................	23	1	12.00	0.00	0.00	0.00	12.00
........................................................................................................................................................................CCCAGGAATAAAACATATTATT........................................	22	1	12.00	0.00	0.00	0.00	12.00
........................................................................................................................................................................CCCATGAATCAAACATATTATT........................................	22	1	11.00	0.00	0.00	0.00	11.00
...............................................................................................................................AGATATGTTTGATATTCTTGT..................................................................................	21	1	11.00	1.00	2.00	0.00	8.00
.........................................................................................................................................................................CCAGGAATCAAACATATTATTA.......................................	22	1	11.00	0.00	0.00	0.00	11.00
........................................................................................................................................................................ACCAGGAATCAAACATATTATTA.......................................	23	1	10.00	0.00	0.00	0.00	10.00
..................................................................................................................................TATGTTTGATATTCTTGGTTG...............................................................................	21	1	9.00	0.00	0.00	0.00	9.00
.................................................................................................................................ATATGTTTGATATTCTTGGT.................................................................................	20	1	9.00	0.00	0.00	0.00	9.00
........................................................................................................................................................................CCCAGGAATCAAACATATTATTT.......................................	23	1	9.00	0.00	0.00	0.00	9.00
........................................................................................................................................................................CACAGGAATCAAACATATTATTA.......................................	23	1	8.00	0.00	0.00	0.00	8.00
........................................................................................................................................................................CCCATGAATCAAACATATTATTA.......................................	23	1	8.00	0.00	0.00	0.00	8.00
........................................................................................................................................................................CCCAGGAATCAAACATATTATTAAA.....................................	25	1	8.00	0.00	0.00	0.00	8.00
...............................................................................................................................AGATATGTTTGATATTCTTGGTTT...............................................................................	24	1	7.00	5.00	0.00	0.00	2.00
...............................................................................................................................ATATATGTTTGATATTCTTGGTTG...............................................................................	24	1	7.00	0.00	0.00	0.00	7.00
........................................................................................................................................................................CCCAGTAATCAAACATATTATT........................................	22	1	7.00	1.00	0.00	0.00	6.00
...............................................................................................................................AGATATGTTTGATATTCT.....................................................................................	18	1	7.00	0.00	0.00	0.00	7.00
...................................................................................................................................ATGTTTGATATTCTTGGT.................................................................................	18	1	7.00	0.00	0.00	0.00	7.00
........................................................................................................................................................................CCTAGGAATCAAACATATTATTA.......................................	23	1	6.00	0.00	0.00	0.00	6.00
..................................................................................................................................TATGTTTGATATTCTTGGT.................................................................................	19	1	6.00	0.00	0.00	0.00	6.00
....................................................................................................................................TGTTTGATATTCTTGGTTG...............................................................................	19	1	6.00	1.00	1.00	0.00	4.00
........................................................................................................................................................................CCCAGGAATCAAAAATATTATT........................................	22	1	6.00	0.00	0.00	0.00	6.00
...............................................................................................................................AGATATGTTTGATATTCTTTGTTG...............................................................................	24	1	5.00	3.00	0.00	0.00	2.00
.................................................................................................................................ATATGTTTGATATTCTTGGTTG...............................................................................	22	1	5.00	1.00	0.00	0.00	4.00
...............................................................................................................................AGATATGTTTGATATTCTTT...................................................................................	20	1	4.00	1.00	1.00	0.00	2.00
..........................................................................................................................................................................CAGGAATCAAACATATTATT........................................	20	1	4.00	0.00	0.00	0.00	4.00
........................................................................................................................................................................CCCAGGAATCCAACATATTATTA.......................................	23	1	4.00	1.00	0.00	0.00	3.00
........................................................................................................................................................................CCCAGGAATAAAACATATTATTA.......................................	23	1	4.00	0.00	0.00	0.00	4.00
........................................................................................................................................................................CCCAGGAATCCAACATATTATT........................................	22	1	4.00	0.00	0.00	0.00	4.00
.................................................................................................................................ATATGTTTGATATTCTTG...................................................................................	18	1	4.00	0.00	1.00	0.00	3.00
...............................................................................................................................AGATATGTTTGATATTCTTGTTG................................................................................	23	1	4.00	0.00	0.00	0.00	4.00
...............................................................................................................................AGATATGTTTGATATTCTTTGTTT...............................................................................	24	1	4.00	4.00	0.00	0.00	0.00
........................................................................................................................................................................CCCAGGAATCAAACATATTATTAT......................................	24	1	3.00	0.00	0.00	0.00	3.00
........................................................................................................................................................................CCCAGGAATCAAACATCTTATTA.......................................	23	1	3.00	1.00	0.00	0.00	2.00
........................................................................................................................................................................CCCAGGAACCAAACATATTATT........................................	22	1	3.00	0.00	0.00	0.00	3.00
........................................................................................................................................................................CACAGGAATCAAACATATTAT.........................................	21	1	3.00	0.00	0.00	0.00	3.00
........................................................................................................................................................................CCAAGGAATCAAACATATTAT.........................................	21	1	3.00	0.00	0.00	0.00	3.00
........................................................................................................................................................................TCCAGGAATCAAACATATTATTA.......................................	23	1	3.00	0.00	0.00	0.00	3.00
...................................................................................................................................ATGTTTGATATTCTTGGTT................................................................................	19	1	3.00	1.00	0.00	0.00	2.00
...................................................................................................................................ATGTTTGATATTCTTGGTTG...............................................................................	20	1	3.00	0.00	0.00	0.00	3.00
...............................................................................................................................AGATATGTTTGATATTCTTGTTTG...............................................................................	24	1	3.00	3.00	0.00	0.00	0.00
........................................................................................................................................................................CCCAGGAATCAAACATATTATTG.......................................	23	1	3.00	0.00	0.00	0.00	3.00
........................................................................................................................................................................CCCAGGAATCAAACATCTTATT........................................	22	1	3.00	0.00	0.00	0.00	3.00
........................................................................................................................................................................CCCAGGAATCAAACATATTCTT........................................	22	1	3.00	2.00	0.00	0.00	1.00
..........................................................................................................................................................................CAGGAATCAAACATATTATTA.......................................	21	1	3.00	0.00	0.00	0.00	3.00

droEug1

ACTA---GTC------------------------------------------C------------CTCAAAA---------C-GAACT-----------AA-----------TTGATGGTTCCAGTGAGATATGTTTGATATTCTTGGTTGTTTCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCG---CC-AATCTACTAAAAAA-------

Size

Hit Count

Total Norm

droBia1

ACTA---GCC------------------------------------------C------------TTCAAAA---------C-GAACT-----------AA-----------TTGATGGTTCCAGTGAGATATGTTTGATATTCTTGGTTGTTTCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCG---CC-AATCTACTAAAACA-------

Size

Hit Count

Total Norm

droTak1

ACCA---GCC------------------------------------------C------------TTCAAAA---------C-GAACT-----------AA-----------TTGATGGTTCCAGTGAGATATGTTTGATATTCTTGGTTGTTTCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCG---CTAAATCTACTAAAACA-------

Size

Hit Count

Total Norm

droEle1

ACTA---GTC------------------------------------------C------------TTCAAAA---------C-CAACT-----------AA-----------TTGATGGTTCCAGTGAGATATGTTTGATATTCTTGGTTGTTTCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCG---CC-AATCTACTAAAACA------A

Size

Hit Count

Total Norm

droRho1

ACTA---GTC------------------------------------------C------------TTCAAAA---------C-AAACT-----------AA-----------TTGATGGTTCCAGTGAGATATGTTTGATATTCTTGGTTGTTTCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCG---CC-AATCTACTAAAACA-------

Size

Hit Count

Total Norm

droFic1

ACTA---GTC------------------------------------------C------------CTCAAAA---------C-GAACT-----------AA-----------TTGATGGTTCCAGTGAGATATGTTTGATATTCTTGGTTGTTACATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCG---CC-AATCTACTAAAACA-------

Size

Hit Count

Total Norm

droKik1

ACTCCACG-C------------------------------------------T------------CTCAAAA---------C-GAACT-----------AA-----------TTGATGGCTCCAGTGAGATATGTTTGATATTCTTGGTTGTTACATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGGCCCTCG---CC-AATCTACTAAACCT-------

Size

Hit Count

Total Norm

droAna3

ACTC---GCC------------------------------------------T------------CTCCAAA---------CACAACT-----------AA-----------TTGATGGTTCCAGTGAGATATGTTTGATATTCTTGGTTGTTACATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACTCTCG---CC-AATCTACTAAAATA-------	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
........................................................................................................................................................................CCCAGGAATCAAACATATTATT........................................	22	1	399.00	15.00	360.00	8.00	16.00
........................................................................................................................................................................CCCAGGAATCAAACATATTATTA.......................................	23	1	398.00	12.00	373.00	4.00	9.00
...............................................................................................................................AGATATGTTTGATATTCTTGGTTG...............................................................................	24	1	98.00	5.00	70.00	14.00	9.00
........................................................................................................................................................................CCCAGGAATCAAACATATTAT.........................................	21	1	86.00	8.00	72.00	4.00	2.00
...............................................................................................................................AGATATGTTTGATATTCTTGGTTGT..............................................................................	25	1	78.00	13.00	59.00	4.00	2.00
........................................................................................................................................................................CCCAGGAATCAAACATATTA..........................................	20	1	53.00	1.00	49.00	2.00	1.00
........................................................................................................................................................................CCCAGGAATCAAACATATT...........................................	19	1	40.00	1.00	39.00	0.00	0.00
...............................................................................................................................AGATATGTTTGATATTCTTGGT.................................................................................	22	1	27.00	4.00	17.00	6.00	0.00
...............................................................................................................................AGATATGTTTGATATTCTTG...................................................................................	20	1	25.00	0.00	11.00	14.00	0.00
...............................................................................................................................AGATATGTTTGATATTCTTGG..................................................................................	21	1	24.00	1.00	14.00	8.00	1.00
...............................................................................................................................AGATATGTTTGATATTCTTGGTT................................................................................	23	1	23.00	5.00	14.00	4.00	0.00
.........................................................................................................................................................................CCAGGAATCAAACATATTATT........................................	21	1	19.00	1.00	17.00	1.00	0.00
...............................................................................................................................AGATATGTTTGATATTCTT....................................................................................	19	1	16.00	0.00	13.00	3.00	0.00
...............................................................................................................................AGATATGTTTGATATTCTTGGTTGA..............................................................................	25	1	11.00	0.00	7.00	0.00	4.00
........................................................................................................................................................................CCCAGGAATCAAACATATTATTAA......................................	24	1	8.00	0.00	8.00	0.00	0.00
...............................................................................................................................AGATATGTTTGATATTCTTGT..................................................................................	21	1	8.00	0.00	3.00	5.00	0.00
.....................................................................................................................................GTTTGATATTCTTGGTTG...............................................................................	18	1	6.00	0.00	4.00	0.00	2.00
........................................................................................................................................................................CCCAGGAATCAAACATATTACTA.......................................	23	1	5.00	0.00	4.00	0.00	1.00
...............................................................................................................................AGATATGTTTGATATTCTTGGTTT...............................................................................	24	1	5.00	1.00	1.00	1.00	2.00
.........................................................................................................................................................................CCAGGAATCAAACATATTATTA.......................................	22	1	5.00	1.00	4.00	0.00	0.00
........................................................................................................................................................................CCCAGTAATCAAACATATTATT........................................	22	1	4.00	0.00	3.00	1.00	0.00
..................................................................................................................................TATGTTTGATATTCTTGGTTG...............................................................................	21	1	4.00	0.00	2.00	0.00	2.00
...................................................................................................................................ATGTTTGATATTCTTGGT.................................................................................	18	1	4.00	1.00	3.00	0.00	0.00
...............................................................................................................................AGATATGTTTGATATTCTTGGTTGAA.............................................................................	26	1	3.00	0.00	1.00	1.00	1.00
..........................................................................................................................CAGTGAGATATGGTAGAT..........................................................................................	18	1	3.00	2.00	0.00	0.00	1.00
........................................................................................................................................................................ACCAGGAATCAAACATATTATT........................................	22	1	3.00	0.00	3.00	0.00	0.00
...............................................................................................................................AGATATGTTTGATATTCTTGGTTGTT.............................................................................	26	1	3.00	0.00	3.00	0.00	0.00
...............................................................................................................................AGATATGGTTGATATTCTTG...................................................................................	20	1	3.00	0.00	0.00	3.00	0.00
...............................................................................................................................AGATATGTTTGATATTCTTGTTTG...............................................................................	24	1	3.00	0.00	0.00	0.00	3.00
...............................................................................................................................AGATATGTTTGATATTCTTGTTT................................................................................	23	1	3.00	0.00	2.00	1.00	0.00

droBip1

ACTC---GCC------------------------------------------CT-----------CTCGAAA---------CCAAACT-----------AA-----------TTGAGGCTTCCAGTGAGATATGTTTGATATTCTTGGTTGTTTCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCG---CC-AATCTACTAAACTT-------

Size

Hit Count

Total Norm

dp4

ACTA---GTT-----------------------AACC------CTAA-----CTCTCATCTGCCCACAAA--CCAACCCAAC-GAACT-----------AA-----------TTGGGGATTCCAGTGAGATATGTTTGATATTCTTGGTTGTTACATTCAAGAGTTCACCCAGGAATCAAACATATTATTACTGTGATACCCG---GA-AATCTACTAAACCC-------	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
........................................................................................................................................................................CCCAGGAATCAAACATATTATTA.......................................	23	1	224.00	14.00	205.00	5.00	0.00
...............................................................................................................................AGATATGTTTGATATTCTTGGTTG...............................................................................	24	1	202.00	10.00	109.00	18.00	65.00
........................................................................................................................................................................CCCAGGAATCAAACATATTATT........................................	22	1	128.00	14.00	110.00	4.00	0.00
...............................................................................................................................AGATATGTTTGATATTCTTG...................................................................................	20	1	39.00	1.00	11.00	26.00	1.00
...............................................................................................................................AGATATGTTTGATATTCTTGG..................................................................................	21	1	32.00	1.00	8.00	20.00	3.00
...............................................................................................................................AGATATGTTTGATATTCTTGGTTGT..............................................................................	25	1	32.00	5.00	19.00	6.00	2.00
...............................................................................................................................AGATATGTTTGATATTCTTGGT.................................................................................	22	1	25.00	5.00	5.00	14.00	1.00
...............................................................................................................................AGATATGTTTGATATTCTTGGTT................................................................................	23	1	20.00	4.00	5.00	5.00	6.00
........................................................................................................................................................................CCCAGGAATCAAACATATTAT.........................................	21	1	14.00	5.00	3.00	5.00	1.00
...............................................................................................................................AGATATGTTTGATATTCTTGT..................................................................................	21	1	11.00	0.00	1.00	10.00	0.00
.....................................................................................................................................GTTTGATATTCTTGGTTG...............................................................................	18	1	10.00	0.00	9.00	1.00	0.00
........................................................................................................................................................................CCCAGGAATCAAACATATTA..........................................	20	1	8.00	1.00	4.00	3.00	0.00
........................................................................................................................................................................CCCAGGAATCCAACATATTATTA.......................................	23	1	8.00	0.00	8.00	0.00	0.00
...............................................................................................................................AGATATGTTTGATATTCTTGGTTT...............................................................................	24	1	7.00	0.00	7.00	0.00	0.00
.........................................................................................................................................................................CCAGGAATCAAACATATTATT........................................	21	1	4.00	1.00	2.00	1.00	0.00
...............................................................................................................................AGATATGTTTGATATTCTTGGTTGA..............................................................................	25	1	3.00	0.00	3.00	0.00	0.00
........................................................................................................................................................................CCCAGGAATCAAACATATT...........................................	19	1	3.00	0.00	1.00	2.00	0.00

droPer1

ACTA---GTT-----------------------AACC------CTAA-----CTCTCATCTGCCCACAAA--CCAACCCAAC-GAACT-----------AA-----------TTGGGGATTCCAGTGAGATATGTTTGATATTCTTGGTTGTTACATTCAAGAGTTCACCCAGGAATCAAACATATTATTACTGTGATACCCG---GA-AATCTACTAAACCC-------	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
...............................................................................................................................AGATATGTTTGATATTCTTGGTTG...............................................................................	24	1	1031.00	3.00	13.00	20.00	25.00	970.00
...............................................................................................................................AGATATGTTTGATATTCTTGGTT................................................................................	23	1	101.00	2.00	1.00	12.00	25.00	61.00
...............................................................................................................................AGATATGTTTGATATTCTTG...................................................................................	20	1	77.00	0.00	4.00	26.00	43.00	4.00
........................................................................................................................................................................CCCAGGAATCAAACATATTATT........................................	22	1	75.00	3.00	22.00	10.00	34.00	6.00
........................................................................................................................................................................CCCAGGAATCAAACATATTATTA.......................................	23	1	59.00	5.00	32.00	5.00	11.00	6.00
...............................................................................................................................AGATATGTTTGATATTCTTGGTTGT..............................................................................	25	1	50.00	2.00	3.00	7.00	10.00	28.00
...............................................................................................................................AGATATGTTTGATATTCTTGGTGG...............................................................................	24	1	46.00	0.00	0.00	0.00	0.00	46.00
...............................................................................................................................AGATATGTTTGATATTCTTGG..................................................................................	21	1	43.00	0.00	2.00	13.00	18.00	10.00
........................................................................................................................................................................CCCAGGAATCAAACATATTAT.........................................	21	1	33.00	1.00	0.00	7.00	24.00	1.00
...............................................................................................................................AGATATGTTTGATATTCTTGGT.................................................................................	22	1	27.00	2.00	3.00	6.00	15.00	1.00
...............................................................................................................................AGATATGTTTGATATTCTT....................................................................................	19	1	12.00	0.00	0.00	5.00	7.00	0.00
...............................................................................................................................AGATATTTTTGATATTCTTGGTTG...............................................................................	24	1	11.00	0.00	0.00	0.00	0.00	11.00
...............................................................................................................................AGATATGTTTGATATTCTTGT..................................................................................	21	1	11.00	0.00	0.00	5.00	6.00	0.00
........................................................................................................................................................................CCCAGGAATCAAACATATTA..........................................	20	1	8.00	2.00	1.00	1.00	4.00	0.00
................................................................................................................................GATATGTTTGATATTCTTGGTTG...............................................................................	23	1	6.00	0.00	0.00	0.00	0.00	6.00
...............................................................................................................................ATATATGTTTGATATTCTTGGTTG...............................................................................	24	1	5.00	0.00	1.00	0.00	0.00	4.00
...................................................................................................................................ATGTTTGATATTCTTGGTTG...............................................................................	20	1	5.00	0.00	1.00	1.00	1.00	2.00
...............................................................................................................................AGATATGTTTGAGATTCTTGGTTG...............................................................................	24	1	4.00	0.00	0.00	0.00	0.00	4.00
...............................................................................................................................ACATATGTTTGATATTCTTGGTTG...............................................................................	24	1	4.00	0.00	0.00	0.00	0.00	4.00
..................................................................................................................................TATGTTTGATATTCTTGGT.................................................................................	19	1	3.00	1.00	1.00	1.00	0.00	0.00
.....................................................................................................................................GTTTGATATTCTTGGTTG...............................................................................	18	1	3.00	0.00	1.00	0.00	0.00	2.00
........................................................................................................................................................................CCCAGGAATCAAACATATTATTAA......................................	24	1	3.00	0.00	0.00	0.00	3.00	0.00
...............................................................................................................................AGATATGTTTGATATTCTTT...................................................................................	20	1	3.00	0.00	0.00	0.00	3.00	0.00
...............................................................................................................................AGATATxTTTGATATTCTTGGTTG...............................................................................	23	1	3.00	0.00	0.00	0.00	0.00	3.00

droWil1

ACTT---GCC------------------------------------------CTCTCATCTGCCCACAAAAA---------C-GAACT-----------AA-----------TTGATGGTCCCAGTGAGATATGTTTGATATTCTTGGTTGTTACATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGATCGTCG---G--AATCTACTAAAAAC-------	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
...............................................................................................................................AGATATGTTTGATATTCTTGGTTG...............................................................................	24	1	6221.00	5.00	310.00	135.00	5771.00
........................................................................................................................................................................CCCAGGAATCAAACATATTATTA.......................................	23	1	2935.00	6.00	1739.00	1149.00	41.00
........................................................................................................................................................................CCCAGGAATCAAACATATTATT........................................	22	1	2686.00	11.00	685.00	1916.00	74.00
...............................................................................................................................AGATATGTTTGATATTCTTGGTT................................................................................	23	1	577.00	1.00	41.00	20.00	515.00
...............................................................................................................................AGATATGTTTGATATTCTTGGTTGT..............................................................................	25	1	576.00	5.00	70.00	85.00	416.00
...............................................................................................................................AGATATGTTTGATATTCTTGG..................................................................................	21	1	355.00	1.00	52.00	35.00	267.00
...............................................................................................................................AGATATGTTTGATATTCTTG...................................................................................	20	1	265.00	0.00	16.00	26.00	223.00
........................................................................................................................................................................CCCAGGAATCAAACATATTAT.........................................	21	1	259.00	2.00	28.00	210.00	19.00
...............................................................................................................................AGATATGTTTGATATTCTTGGTGG...............................................................................	24	1	191.00	0.00	0.00	0.00	191.00
........................................................................................................................................................................CCCAGGAATCAAACATATTA..........................................	20	1	135.00	1.00	37.00	94.00	3.00
...............................................................................................................................AGATATGTTTGATATTCTTGGT.................................................................................	22	1	118.00	7.00	22.00	39.00	50.00
........................................................................................................................................................................CCCAGGAATCAAACATATT...........................................	19	1	91.00	0.00	6.00	85.00	0.00
...............................................................................................................................AGATATTTTTGATATTCTTGGTTG...............................................................................	24	1	79.00	0.00	1.00	0.00	78.00
...............................................................................................................................AGATATGTTTGATATTCTTGGTC................................................................................	23	1	42.00	0.00	0.00	1.00	41.00
........................................................................................................................................................................CCCAGGAATCAAACATATTATTAA......................................	24	1	39.00	0.00	24.00	14.00	1.00
...............................................................................................................................AGATATGTTTGATATTCTTGGTTGG..............................................................................	25	1	37.00	0.00	2.00	1.00	34.00
...............................................................................................................................AGATATGTTTGATATTCTTGGTTGC..............................................................................	25	1	29.00	0.00	0.00	0.00	29.00
.........................................................................................................................................................................CCAGGAATCAAACATATTATT........................................	21	1	27.00	0.00	8.00	19.00	0.00
.........................................................................................................................................................................CCAGGAATCAAACATATTATTA.......................................	22	1	25.00	0.00	20.00	5.00	0.00
...............................................................................................................................AGATATGTTTGATATTCTTGGTTGA..............................................................................	25	1	22.00	0.00	12.00	2.00	8.00
...............................................................................................................................ATATATGTTTGATATTCTTGGTTG...............................................................................	24	1	22.00	0.00	7.00	1.00	14.00
...............................................................................................................................AGATATGTTTGATATTCTTGTTG................................................................................	23	1	21.00	0.00	14.00	7.00	0.00
...................................................................................................................................ATGTTTGATATTCTTGGTTG...............................................................................	20	1	19.00	1.00	12.00	5.00	1.00
...............................................................................................................................AGATATGTTTGAGATTCTTGGTTG...............................................................................	24	1	19.00	0.00	0.00	0.00	19.00
...............................................................................................................................AGATATGTTTGATATTCTT....................................................................................	19	1	18.00	0.00	0.00	6.00	12.00
...............................................................................................................................ACATATGTTTGATATTCTTGGTTG...............................................................................	24	1	16.00	0.00	0.00	0.00	16.00
...............................................................................................................................AGATATxTTTGATATTCTTGGTTG...............................................................................	23	1	16.00	0.00	1.00	0.00	15.00
.................................................................................................................................ATATGTTTGATATTCTTGGTTG...............................................................................	22	1	16.00	1.00	7.00	4.00	4.00
........................................................................................................................................................................CACAGGAATCAAACATATTATTA.......................................	23	1	15.00	0.00	10.00	5.00	0.00
...............................................................................................................................AGATATGTTTGATATTCTTGGTTGTT.............................................................................	26	1	15.00	0.00	1.00	0.00	14.00
...............................................................................................................................AGATATGTTTGATATTCT.....................................................................................	18	1	14.00	0.00	0.00	0.00	14.00
..................................................................................................................................TATGTTTGATATTCTTGGTTG...............................................................................	21	1	14.00	0.00	3.00	6.00	5.00
...............................................................................................................................AGATATGTTTGAAATTCTTGGTTG...............................................................................	24	1	13.00	0.00	0.00	0.00	13.00
...............................................................................................................................AGATATGTTTGATATTCTTGT..................................................................................	21	1	11.00	1.00	2.00	6.00	2.00
........................................................................................................................................................................ACCAGGAATCAAACATATTATTA.......................................	23	1	11.00	0.00	8.00	3.00	0.00
........................................................................................................................................................................CCAAGGAATCAAACATATTATTA.......................................	23	1	10.00	0.00	9.00	1.00	0.00
...............................................................................................................................AGATATGTTTGATATTCTTTGTTG...............................................................................	24	1	9.00	0.00	4.00	4.00	1.00
........................................................................................................................................................................CCCAGGAATCAAACATATTATTAAA.....................................	25	1	9.00	0.00	7.00	2.00	0.00
........................................................................................................................................................................CCCAGGAATAAAACATATTATT........................................	22	1	9.00	0.00	2.00	7.00	0.00
........................................................................................................................................................................CCCAGGAATCAAAAATATTATT........................................	22	1	9.00	0.00	3.00	6.00	0.00
........................................................................................................................................................................CACAGGAATCAAACATATTATT........................................	22	1	9.00	0.00	1.00	8.00	0.00
....................................................................................................................................TGTTTGATATTCTTGGTTG...............................................................................	19	1	9.00	0.00	3.00	5.00	1.00
...............................................................................................................................AGATATCTTTGATATTCTTGGTTG...............................................................................	24	1	8.00	0.00	3.00	0.00	5.00
........................................................................................................................................................................CCAAGGAATCAAACATATTATT........................................	22	1	8.00	0.00	3.00	5.00	0.00
........................................................................................................................................................................ACCAGGAATCAAACATATTATT........................................	22	1	7.00	0.00	4.00	3.00	0.00
...............................................................................................................................AGATATGTTTGATATTCTTGGTA................................................................................	23	1	7.00	0.00	0.00	0.00	7.00
...............................................................................................................................AGATATGTTTGATATTCTTGGTTC...............................................................................	24	1	7.00	0.00	0.00	0.00	7.00
........................................................................................................................................................................CCCAGGAATCAAACATATTACT........................................	22	1	7.00	0.00	0.00	7.00	0.00
...............................................................................................................................AGATATGTTTGATATTCTTGGA.................................................................................	22	1	7.00	0.00	0.00	0.00	7.00
...............................................................................................................................GGATATGTTTGATATTCTTGGTTG...............................................................................	24	1	7.00	0.00	0.00	1.00	6.00
........................................................................................................................................................................TCCAGGAATCAAACATATTATTA.......................................	23	1	6.00	0.00	1.00	5.00	0.00
........................................................................................................................................................................CTCAGGAATCAAACATATTATT........................................	22	1	6.00	0.00	2.00	4.00	0.00
...............................................................................................................................AGATATGTTTGATATTCTTGGTTT...............................................................................	24	1	6.00	0.00	1.00	1.00	4.00
...............................................................................................................................AGATATTTTTGATATTCTTGGTTGT..............................................................................	25	1	6.00	0.00	0.00	1.00	5.00
...............................................................................................................................AGATATGTTTGATATTCTTCGTTG...............................................................................	24	1	6.00	0.00	3.00	3.00	0.00
...............................................................................................................................AGATATGTTTGATATTCTTGGTG................................................................................	23	1	6.00	0.00	0.00	0.00	6.00
...............................................................................................................................AGATATGCTTGATATTCTTGGTTG...............................................................................	24	1	6.00	0.00	0.00	0.00	6.00
........................................................................................................................................................................TCCAGGAATCAAACATATTATT........................................	22	1	6.00	0.00	1.00	5.00	0.00
........................................................................................................................................................................CCCAGAAATCAAACATATTATTA.......................................	23	1	6.00	0.00	4.00	2.00	0.00
........................................................................................................................................................................CCCAGGAATAAAACATATTATTA.......................................	23	1	5.00	0.00	2.00	3.00	0.00
........................................................................................................................................................................CCCAGGACTCAAACATATTATT........................................	22	1	5.00	0.00	0.00	5.00	0.00
........................................................................................................................................................................CCCAGGAATCCAACATATTATTA.......................................	23	1	5.00	0.00	1.00	4.00	0.00
...............................................................................................................................AGATATGTTTGATATTCTTGGCTG...............................................................................	24	1	5.00	0.00	0.00	0.00	5.00
........................................................................................................................................................................CCCAGGAATCAAACACATTATT........................................	22	1	5.00	0.00	1.00	4.00	0.00
.................................................................................................................................AGATTTTTGATATTCTTGGTTG...............................................................................	22	1	5.00	0.00	0.00	0.00	5.00
.................................................................................................................................AGATGTTTGATATTCTTGGTTG...............................................................................	22	1	5.00	0.00	0.00	0.00	5.00
........................................................................................................................................................................CCCAGTAATCAAACATATTATT........................................	22	1	5.00	0.00	3.00	1.00	1.00
...............................................................................................................................AGATATGTTTGGTATTCTTGGTTG...............................................................................	24	1	5.00	0.00	1.00	0.00	4.00
........................................................................................................................................................................CCCAGGAATCAAGCATATTATTA.......................................	23	1	5.00	0.00	3.00	2.00	0.00
...............................................................................................................................AGATATGTTTTATATTCTTGGTTG...............................................................................	24	1	5.00	0.00	0.00	0.00	5.00
........................................................................................................................................................................CCCAGGAATCAAACATATTATA........................................	22	1	5.00	0.00	2.00	3.00	0.00
........................................................................................................................................................................CCCATGAATCAAACATATTATT........................................	22	1	5.00	0.00	2.00	3.00	0.00
........................................................................................................................................................................CCCAGAAATCAAACATATTATT........................................	22	1	5.00	0.00	2.00	3.00	0.00
........................................................................................................................................................................CCCAGGGATCAAACATATTATTA.......................................	23	1	4.00	0.00	1.00	3.00	0.00
........................................................................................................................................................................CCCAGGGATCAAACATATTATT........................................	22	1	4.00	0.00	0.00	4.00	0.00
...............................................................................................................................AGATATGTTTGATATTCTTGGTTA...............................................................................	24	1	4.00	0.00	1.00	0.00	3.00
...............................................................................................................................AGACATGTTTGATATTCTTGGTTG...............................................................................	24	1	4.00	0.00	0.00	0.00	4.00
...............................................................................................................................AGATATGTTTGATATTCTTGGTCG...............................................................................	24	1	4.00	0.00	0.00	0.00	4.00
........................................................................................................................................................................CCCAGGAATCAAACATATTATTAT......................................	24	1	4.00	0.00	1.00	2.00	1.00
...............................................................................................................................ATATATGTTTGATATTCTTGGT.................................................................................	22	1	4.00	0.00	4.00	0.00	0.00
........................................................................................................................................................................CCCAGGAATCAAACATCTTATTA.......................................	23	1	4.00	0.00	1.00	3.00	0.00
........................................................................................................................................................................CCTAGGAATCAAACATATTATTA.......................................	23	1	4.00	0.00	2.00	2.00	0.00
........................................................................................................................................................................CCCAGGAATCAAACATATTCTT........................................	22	1	4.00	0.00	2.00	2.00	0.00
...............................................................................................................................ATATATGTTTGATATTCTTG...................................................................................	20	1	4.00	0.00	0.00	0.00	4.00
........................................................................................................................................................................CCCAGGAATCAAACATCTTATT........................................	22	1	4.00	0.00	1.00	3.00	0.00
........................................................................................................................................................................CCCAGGAATCCAACATATTATT........................................	22	1	4.00	0.00	0.00	4.00	0.00
........................................................................................................................................................................CCCAAGAATCAAACATATTATT........................................	22	1	4.00	0.00	0.00	4.00	0.00
...............................................................................................................................AGATATGTTTGATATTCTTGGTTGAA.............................................................................	26	1	4.00	0.00	4.00	0.00	0.00
........................................................................................................................................................................CCCAGGACTCAAACATATTATTA.......................................	23	1	4.00	0.00	3.00	1.00	0.00
........................................................................................................................................................................CCCAGGAATCAAACGTATTATT........................................	22	1	3.00	0.00	1.00	2.00	0.00
...............................................................................................................................AGATATCTTTGATATTCTTGGTTGT..............................................................................	25	1	3.00	0.00	1.00	0.00	2.00
........................................................................................................................................................................CCCAGGAATCAACCATATTATT........................................	22	1	3.00	0.00	1.00	2.00	0.00
...............................................................................................................................ATATATGTTTGATATTCTTGGTGG...............................................................................	24	1	3.00	0.00	0.00	0.00	3.00
........................................................................................................................................................................CCCATGAATCAAACATATTATTA.......................................	23	1	3.00	0.00	3.00	0.00	0.00
..........................................................................................................................................................................CAGGAATCAAACATATTATTA.......................................	21	1	3.00	0.00	2.00	1.00	0.00
...............................................................................................................................AGATATGTTCGATATTCTTGGTTG...............................................................................	24	1	3.00	0.00	1.00	0.00	2.00
........................................................................................................................................................................CCCAAGAATCAAACATATTATTA.......................................	23	1	3.00	0.00	1.00	2.00	0.00
........................................................................................................................................................................CCCAGGAATCAAACATATTATCA.......................................	23	1	3.00	0.00	2.00	1.00	0.00
.................................................................................................................................AGATxTTTGATATTCTTGGTTG...............................................................................	21	1	3.00	0.00	0.00	0.00	3.00
........................................................................................................................................................................CCCAGGAATCAAACCTATTATTA.......................................	23	1	3.00	0.00	1.00	2.00	0.00

droVir3

AC-----------------------------------------------------------------CAAAT---------C-AAACT-----------ACCCCCCACTCATCTAATGATTCCAGTAAGATATGTTTGATATTCTTGGTTGTTACATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGATTGTTG---AA-ACTCTACTAAACCA-------	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
...............................................................................................................................AGATATGTTTGATATTCTTGGTTG...............................................................................	24	1	2123.00	15.00	10.00	198.00	771.00	1129.00
...............................................................................................................................AGATATGTTTGATATTCTTGG..................................................................................	21	1	156.00	2.00	37.00	3.00	10.00	104.00
...............................................................................................................................AGATATGTTTGATATTCTTGGTT................................................................................	23	1	147.00	6.00	5.00	18.00	27.00	91.00
...............................................................................................................................AGATATGTTTGATATTCTTGGTTGT..............................................................................	25	1	132.00	9.00	9.00	11.00	46.00	57.00
...............................................................................................................................AGATATGTTTGATATTCTTGGTC................................................................................	23	1	112.00	0.00	0.00	0.00	101.00	11.00
...............................................................................................................................AGATATGTTTGATATTCTTGGTGG...............................................................................	24	1	87.00	0.00	0.00	0.00	32.00	55.00
........................................................................................................................................................................CCCAGGAATCAAACATATTATT........................................	22	1	80.00	16.00	24.00	12.00	2.00	26.00
........................................................................................................................................................................CCCAGGAATCAAACATATTATTA.......................................	23	1	54.00	26.00	8.00	17.00	0.00	3.00
...............................................................................................................................AGATATGTTTGATATTCTTG...................................................................................	20	1	45.00	1.00	13.00	0.00	0.00	31.00
...............................................................................................................................AGATATGTTTGATATTCTTGGTTGTCC............................................................................	27	1	43.00	0.00	0.00	0.00	38.00	5.00
...............................................................................................................................AGATATGTTTGATATTCTTTGTTG...............................................................................	24	1	36.00	0.00	0.00	36.00	0.00	0.00
...............................................................................................................................AGATATGTTTGATATTCTTGGT.................................................................................	22	1	35.00	3.00	9.00	8.00	4.00	11.00
...............................................................................................................................AGATATGTTTGATATTCTTGGTTT...............................................................................	24	1	35.00	0.00	0.00	32.00	0.00	3.00
...............................................................................................................................AGATATGTTTGATATTCTTGGTTGTC.............................................................................	26	1	35.00	0.00	0.00	0.00	24.00	11.00
........................................................................................................................................................................CCCAGGAATCAAACATATTAT.........................................	21	1	29.00	4.00	21.00	1.00	0.00	3.00
...............................................................................................................................AGATATTTTTGATATTCTTGGTTG...............................................................................	24	1	26.00	0.00	0.00	0.00	16.00	10.00
...............................................................................................................................AGATATGTTTGATATTCTT....................................................................................	19	1	20.00	0.00	8.00	0.00	1.00	11.00
...............................................................................................................................AGATATGTTTGATATTCTTTGTTT...............................................................................	24	1	13.00	0.00	0.00	13.00	0.00	0.00
...............................................................................................................................AGATATGTTTGATATTCTTGGTTC...............................................................................	24	1	13.00	0.00	0.00	1.00	12.00	0.00
...............................................................................................................................AGATATGTTTGATATTCTTGGTTGA..............................................................................	25	1	10.00	0.00	2.00	3.00	3.00	2.00
...............................................................................................................................ATATATGTTTGATATTCTTGGTTG...............................................................................	24	1	10.00	0.00	0.00	0.00	7.00	3.00
...............................................................................................................................AGATATGTTTGATATTCTTGTTTG...............................................................................	24	1	10.00	0.00	0.00	10.00	0.00	0.00
...............................................................................................................................AGATATGTTTGATATTCTTGGTTGTCT............................................................................	27	1	9.00	0.00	0.00	0.00	8.00	1.00
...............................................................................................................................AGATATGTTTGATATTCTTGGTTGG..............................................................................	25	1	8.00	0.00	0.00	1.00	5.00	2.00
...............................................................................................................................AGATATxTTTGATATTCTTGGTTG...............................................................................	23	1	8.00	0.00	0.00	0.00	2.00	6.00
...............................................................................................................................AGATATGTTTGATATTCTTGGTCT...............................................................................	24	1	8.00	0.00	0.00	0.00	6.00	2.00
...............................................................................................................................AGATATGTTTGATATTCTTGGTTGC..............................................................................	25	1	7.00	0.00	0.00	0.00	2.00	5.00
...............................................................................................................................AGATATGTTTGATATTCTTGT..................................................................................	21	1	7.00	1.00	5.00	1.00	0.00	0.00
........................................................................................................................................................................CCCAGGAATCAAACATATT...........................................	19	1	7.00	0.00	6.00	1.00	0.00	0.00
...............................................................................................................................AGATATGTTTGCTATTCTTGGTTG...............................................................................	24	1	5.00	0.00	0.00	1.00	1.00	3.00
...................................................................................................................................ATGTTTGATATTCTTGGTTG...............................................................................	20	1	5.00	1.00	0.00	1.00	0.00	3.00
...............................................................................................................................AGATATGTTTGATATTCTTGTTTT...............................................................................	24	1	5.00	0.00	0.00	5.00	0.00	0.00
...............................................................................................................................AGATATGTTTGATATTCTTGGTCG...............................................................................	24	1	5.00	0.00	0.00	1.00	4.00	0.00
........................................................................................................................................................................CCCAGGAATCAAACATATTA..........................................	20	1	4.00	0.00	3.00	0.00	1.00	0.00
...............................................................................................................................AGATATGTTTGATATTCTTGGAC................................................................................	23	1	4.00	0.00	0.00	0.00	1.00	3.00
.................................................................................................................................AGATTTTTGATATTCTTGGTTG...............................................................................	22	1	4.00	0.00	0.00	0.00	1.00	3.00
.....................................................................................................................................GTTTGATATTCTTGGTTG...............................................................................	18	1	4.00	0.00	0.00	0.00	3.00	1.00
...............................................................................................................................AGATATGTTTGATATTCT.....................................................................................	18	1	4.00	0.00	1.00	0.00	0.00	3.00
...............................................................................................................................AGATATGTTTGATATTCTTGGA.................................................................................	22	1	4.00	0.00	1.00	0.00	1.00	2.00
.................................................................................................................................ATATGTTTGATATTCTTGGTTG...............................................................................	22	1	3.00	0.00	0.00	0.00	2.00	1.00
...............................................................................................................................AGATATGTTTGATATTCTTGGG.................................................................................	22	1	3.00	0.00	0.00	0.00	0.00	3.00
...............................................................................................................................AGATATGTTTGATATTCTTGGTTCC..............................................................................	25	1	3.00	0.00	0.00	0.00	3.00	0.00
...............................................................................................................................AGATATTTTTGATATTCTTGGTT................................................................................	23	1	3.00	0.00	0.00	1.00	0.00	2.00
................................................................................................................................GATATGTTTGATATTCTTGGTTG...............................................................................	23	1	3.00	0.00	0.00	0.00	1.00	2.00

droMoj3

AGC-------------------------------------------------C------------ACCAAAATCAACC-----AAACTACCTATCCACTAC------CTCATCTAACGATTCCAGTGAGATATGTTTGATATTCTTGGTTGTTACATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGA---TCGCTTAA-ACTCTACTAAAA-A-------	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
........................................................................................................................................................................CCCAGGAATCAAACATATTATTA.......................................	23	1	337.00	63.00	30.00	10.00	234.00
...............................................................................................................................AGATATGTTTGATATTCTTGGTTG...............................................................................	24	1	215.00	14.00	43.00	22.00	136.00
........................................................................................................................................................................CCCAGGAATCAAACATATTATT........................................	22	1	195.00	48.00	37.00	22.00	88.00
...............................................................................................................................AGATATGTTTGATATTCTTG...................................................................................	20	1	72.00	1.00	48.00	22.00	1.00
........................................................................................................................................................................CCCAGGAATCAAACATATTAT.........................................	21	1	71.00	7.00	44.00	17.00	3.00
...............................................................................................................................AGATATGTTTGATATTCTTGG..................................................................................	21	1	67.00	5.00	34.00	19.00	9.00
...............................................................................................................................AGATATGTTTGATATTCTTGGTTGT..............................................................................	25	1	46.00	6.00	5.00	4.00	31.00
...............................................................................................................................AGATATGTTTGATATTCTTGGTT................................................................................	23	1	32.00	7.00	16.00	6.00	3.00
...............................................................................................................................AGATATGTTTGATATTCTTGGT.................................................................................	22	1	29.00	3.00	16.00	7.00	3.00
...................................................................................................................................ATGTTTGATATTCTTGGTTG...............................................................................	20	1	12.00	0.00	1.00	0.00	11.00
.....................................................................................................................................GTTTGATATTCTTGGTTG...............................................................................	18	1	12.00	0.00	0.00	0.00	12.00
...............................................................................................................................AGATATGTTTGATATTCTTGGTTT...............................................................................	24	1	10.00	0.00	3.00	4.00	3.00
........................................................................................................................................................................CCCAGGAATCAAACATATTA..........................................	20	1	9.00	3.00	3.00	0.00	3.00
...............................................................................................................................AGATATGTTTGATATTCTT....................................................................................	19	1	9.00	1.00	6.00	2.00	0.00
........................................................................................................................................................................CCCAGGAATCCAACATATTATTA.......................................	23	1	8.00	0.00	0.00	1.00	7.00
...............................................................................................................................AGATATGTTTGATATTCTTTG..................................................................................	21	1	8.00	0.00	2.00	6.00	0.00
........................................................................................................................................................................CCCAGGAATCAAACATATT...........................................	19	1	7.00	1.00	4.00	0.00	2.00
.........................................................................................................................................................................CCAGGAATCAAACATATTATTA.......................................	22	1	7.00	0.00	0.00	0.00	7.00
...............................................................................................................................AGATATGTTTGATATTCTTGT..................................................................................	21	1	6.00	0.00	4.00	2.00	0.00
...............................................................................................................................AGATATGTTTGATATTCTTTGTTG...............................................................................	24	1	5.00	0.00	0.00	2.00	3.00
...............................................................................................................................AGATATGTTTGATATTCTTT...................................................................................	20	2	2.00	0.00	0.00	2.00	0.00
........................................................................................................................................................................CCCAGGAATCAAACATATTATTAA......................................	24	1	4.00	1.00	1.00	1.00	1.00
.........................................................................................................................................................................CCAGGAATCAAACATATTATT........................................	21	1	3.00	0.00	1.00	0.00	2.00
...............................................................................................................................AGATATGTTTGATATTCTTTGTTT...............................................................................	24	1	3.00	0.00	1.00	1.00	1.00
...............................................................................................................................AGATATGTTTGATATTCTTGGGTG...............................................................................	24	1	3.00	0.00	0.00	0.00	3.00
..................................................................................................................................TATGTTTGATATTCTTGGTTG...............................................................................	21	1	3.00	1.00	0.00	0.00	2.00
....................................................................................................................................TGTTTGATATTCTTGGTTG...............................................................................	19	1	3.00	0.00	0.00	0.00	3.00
...............................................................................................................................AGATATGTTTGATATTCTTGGTTGTC.............................................................................	26	1	3.00	1.00	1.00	0.00	1.00

droGri2

ACTA---CCAATAAAATAAAAATCCAACCAATCAACCAACCAACCAACTACCCA-----------------------------------------------------CTCATCTAATGATTCCAGTGAGATATGTTTGATATTCTTGGTTGTTACATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGATTGTTG---AA-ACTCTACTAAAAACAAATCAA	Size	Hit Count	Total Norm	V109 Male body
...............................................................................................................................AGATATGTTTGATATTCTTGG..................................................................................	21	1	2.00	2.00
...............................................................................................................................AGATATGTTTGATATTCTTGGTTG...............................................................................	24	1	2.00	2.00
........................................................................................................................................................................CCCAGGAATCAAACATATTATTA.......................................	23	1	1.00	1.00
.......................................................................................................................................................................ACCCAGGAATCTAACATATG...........................................	20	1	1.00	1.00
........................................................................................................................................................................CCCAGGAATCAAACATAATATT........................................	22	1	1.00	1.00
........................................................................................................................................................................CCCAGGAATCAAACATATTATT........................................	22	1	1.00	1.00
...............................................................................................................................AGATATGTTTGATATTCTTGGTT................................................................................	23	1	1.00	1.00

Generated: 04/20/2012 at 05:20:22 EDT

dme-mir-190

chr3L:8564899-8564998 +

Known_mirbase

intron

20-way Fast Statistical Aligner (FSA) re-alignment

Visually pleasing best hits from LASTZ and MAF

Legend

Re-alignment after removal of non-confident orthologs

20-way Secondary Structure

Small RNA-seq read pileup