dme-mir-190- 12- and 20-way alignments

dme-mir-190	chr3L:8564899-8564998 +	Known_mirbase
[View on miRBase]	[View on UCSC Genome Browser {Cornell Mirror}]	intron

Legend:

   mature strand at position 8564922-8564942
   star strand at position 8564963-8564984
   mutations
   read mismatches
   coordinate mismatch (possible incorrect ortholog)

12-way Fast Statistical Aligner re-alignment (From MAFs)

Species	Coordinate	Alignment
dm3	chr3L:8564884-8565013 +	ACTTGCCCT------------T-----CA--------------------------------------------A-------AA-CGAACTAA---------------------TTGATGGTTCCAGTGAGATATGTTTGATATTCTTGGTTGTTTCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCGCCAATCTACTAAA-------ACA
droSim1	chr3L:8005898-8006027 +	ACTTGCCCT------------T-----CA--------------------------------------------A-------AA-CGAACTAA---------------------TTGATGGTTCCAGTGAGATATGTTTGATATTCTTGGTTGTATCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCGCCAATCTACTAAA-------ACA
droSec1	super_0:844136-844265 +	ACTTGCCCT------------T-----CA--------------------------------------------A-------AA-TGAACTAA---------------------TTGATGGTTCCAGTGAGATATGTTTGATATTCTTGGTTGTTTCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCGCCAATCTACTAAA-------ACA
droYak2	chr3L:3348658-3348787 -	ACTAGCCCT------------T-----CA--------------------------------------------A-------AA-CGAACTAA---------------------TTGATGGTTCCAGTGAGATATGTTTGATATTCTTGGTTGTTTCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCGCCAATCTACTAAA-------ACA
droEre2	scaffold_4784:5482466-5482595 -	ACTAGCCCT------------T-----CA--------------------------------------------A-------AT-CGAACTAA---------------------TTGATGGTTCCAGTGAGATATGTTTGATATTCTTGGTTGTTTCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTAGCCTTCGCCAATCTACTAAA-------ACA
droAna3	scaffold_13337:8074872-8075002 -	ACTCGCCTC------------T-----CC--------------------------------------------A-------AACACAACTAA---------------------TTGATGGTTCCAGTGAGATATGTTTGATATTCTTGGTTGTTACATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACTCTCGCCAATCTACTAAA-------ATA
dp4	chrXR_group3a:147682-147845 -	ACTAGT---------------------TA--------------------ACCCTAACTCTCATCTGCCCACAAACCAACCCAA-CGAACTAA---------------------TTGGGGATTCCAGTGAGATATGTTTGATATTCTTGGTTGTTACATTCAAGAGTTCACCCAGGAATCAAACATATTATTACTGTGATACCCGGAAATCTACTAAACCCCCAAACC
droPer1	super_23:151043-151206 -	ACTAGT---------------------TA--------------------ACCCTAACTCTCATCTGCCCACAAACCAACCCAA-CGAACTAA---------------------TTGGGGATTCCAGTGAGATATGTTTGATATTCTTGGTTGTTACATTCAAGAGTTCACCCAGGAATCAAACATATTATTACTGTGATACCCGGAAATCTACTAAACCCCCAAACC
droWil1	scaffold_180949:5214317-5214457 +	ACTTGCCCT-------------------------------------------------CTCATCTGCCCACAAA-------AA-CGAACTAA---------------------TTGATGGTCCCAGTGAGATATGTTTGATATTCTTGGTTGTTACATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGATCGTCGG-AATCTACTAAA-------AAC
droVir3	scaffold_13049:6215322-6215477 +	ACTCATCTCGAAAGGCTCGTCTTAAACCA--------------------------------------------A-------AT-CAAACTAC-----CC-CCCA----CTCATCTAATGATTCCAGTAAGATATGTTTGATATTCTTGGTTGTTACATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGATTGTTGAAACTCTACTAAA-------C--
droMoj3	scaffold_6680:4536878-4537026 +	ACCAGCCAC------------------CA--------------------------------------------A-------AA-TCAACCAAACTACCTATCCACTACCTCATCTAACGATTCCAGTGAGATATGTTTGATATTCTTGGTTGTTACATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGATCGCTTAAACTCTACTaaa-------a-a
droGri2	scaffold_15072:36257-36419 +	AACTACCAA------------T-----AAAATAAAAATccaaccaatcaacc-------------------------aac-----caacc-aacTA----CCCA----CTCATCTAATGATTCCAGTGAGATATGTTTGATATTCTTGGTTGTTACATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGATTGTTGAAACTCTACTAaa-------a-a

20-way Fast Statistical Aligner re-alignment (Top LASTZ hits)

Species	Coordinate	Lastz Id	Alignment
dm3	chr3L:8564884-8565013 +	NA	ACTT---GCC------------------------------------------C------------TTCAAAA---------C-GAACT-----------AA-----------TTGATGGTTCCAGTGAGATATGTTTGATATTCTTGGTTGTTTCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCG---CC-AATCTACTAAAACA-------
droSim1	chr3L:8005898-8006027 +	1	ACTT---GCC------------------------------------------C------------TTCAAAA---------C-GAACT-----------AA-----------TTGATGGTTCCAGTGAGATATGTTTGATATTCTTGGTTGTATCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCG---CC-AATCTACTAAAACA-------
droSec1	super_0:844136-844265 +	1	ACTT---GCC------------------------------------------C------------TTCAAAA---------T-GAACT-----------AA-----------TTGATGGTTCCAGTGAGATATGTTTGATATTCTTGGTTGTTTCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCG---CC-AATCTACTAAAACA-------
droYak2	chr3L:3348658-3348787 -	1	ACTA---GCC------------------------------------------C------------TTCAAAA---------C-GAACT-----------AA-----------TTGATGGTTCCAGTGAGATATGTTTGATATTCTTGGTTGTTTCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCG---CC-AATCTACTAAAACA-------
droEre2	scaffold_4784:5482466-5482595 -	1	ACTA---GCC------------------------------------------C------------TTCAAAT---------C-GAACT-----------AA-----------TTGATGGTTCCAGTGAGATATGTTTGATATTCTTGGTTGTTTCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTAGCCTTCG---CC-AATCTACTAAAACA-------
droEug1	scf7180000409524:96530-96659 -	1	ACTA---GTC------------------------------------------C------------CTCAAAA---------C-GAACT-----------AA-----------TTGATGGTTCCAGTGAGATATGTTTGATATTCTTGGTTGTTTCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCG---CC-AATCTACTAAAAAA-------
droBia1	scf7180000302428:10499125-10499254 +	1	ACTA---GCC------------------------------------------C------------TTCAAAA---------C-GAACT-----------AA-----------TTGATGGTTCCAGTGAGATATGTTTGATATTCTTGGTTGTTTCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCG---CC-AATCTACTAAAACA-------
droTak1	scf7180000414445:150042-150172 -	1	ACCA---GCC------------------------------------------C------------TTCAAAA---------C-GAACT-----------AA-----------TTGATGGTTCCAGTGAGATATGTTTGATATTCTTGGTTGTTTCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCG---CTAAATCTACTAAAACA-------
droEle1	scf7180000491268:124838-124968 -	1	ACTA---GTC------------------------------------------C------------TTCAAAA---------C-CAACT-----------AA-----------TTGATGGTTCCAGTGAGATATGTTTGATATTCTTGGTTGTTTCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCG---CC-AATCTACTAAAACA------A
droRho1	scf7180000779204:207656-207785 +	1	ACTA---GTC------------------------------------------C------------TTCAAAA---------C-AAACT-----------AA-----------TTGATGGTTCCAGTGAGATATGTTTGATATTCTTGGTTGTTTCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCG---CC-AATCTACTAAAACA-------
droFic1	scf7180000453833:743441-743570 +	1	ACTA---GTC------------------------------------------C------------CTCAAAA---------C-GAACT-----------AA-----------TTGATGGTTCCAGTGAGATATGTTTGATATTCTTGGTTGTTACATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCG---CC-AATCTACTAAAACA-------
droKik1	scf7180000302474:426003-426134 -	2	ACTCCACG-C------------------------------------------T------------CTCAAAA---------C-GAACT-----------AA-----------TTGATGGCTCCAGTGAGATATGTTTGATATTCTTGGTTGTTACATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGGCCCTCG---CC-AATCTACTAAACCT-------
droAna3	scaffold_13337:8074872-8075002 -	1	ACTC---GCC------------------------------------------T------------CTCCAAA---------CACAACT-----------AA-----------TTGATGGTTCCAGTGAGATATGTTTGATATTCTTGGTTGTTACATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACTCTCG---CC-AATCTACTAAAATA-------
droBip1	scf7180000396541:230884-231015 -	1	ACTC---GCC------------------------------------------CT-----------CTCGAAA---------CCAAACT-----------AA-----------TTGAGGCTTCCAGTGAGATATGTTTGATATTCTTGGTTGTTTCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCG---CC-AATCTACTAAACTT-------
dp4	chrXR_group3a:147689-147845 -	1	ACTA---GTT-----------------------AACC------CTAA-----CTCTCATCTGCCCACAAA--CCAACCCAAC-GAACT-----------AA-----------TTGGGGATTCCAGTGAGATATGTTTGATATTCTTGGTTGTTACATTCAAGAGTTCACCCAGGAATCAAACATATTATTACTGTGATACCCG---GA-AATCTACTAAACCC-------
droPer1	super_23:151050-151206 -	1	ACTA---GTT-----------------------AACC------CTAA-----CTCTCATCTGCCCACAAA--CCAACCCAAC-GAACT-----------AA-----------TTGGGGATTCCAGTGAGATATGTTTGATATTCTTGGTTGTTACATTCAAGAGTTCACCCAGGAATCAAACATATTATTACTGTGATACCCG---GA-AATCTACTAAACCC-------
droWil1	scaffold_180949:5214317-5214457 +	1	ACTT---GCC------------------------------------------CTCTCATCTGCCCACAAAAA---------C-GAACT-----------AA-----------TTGATGGTCCCAGTGAGATATGTTTGATATTCTTGGTTGTTACATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGATCGTCG---G--AATCTACTAAAAAC-------
droVir3	scaffold_13049:6215347-6215479 +	1	AC-----------------------------------------------------------------CAAAT---------C-AAACT-----------ACCCCCCACTCATCTAATGATTCCAGTAAGATATGTTTGATATTCTTGGTTGTTACATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGATTGTTG---AA-ACTCTACTAAACCA-------
droMoj3	scaffold_6680:4536880-4537026 +	1	AGC-------------------------------------------------C------------ACCAAAATCAACC-----AAACTACCTATCCACTAC------CTCATCTAACGATTCCAGTGAGATATGTTTGATATTCTTGGTTGTTACATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGA---TCGCTTAA-ACTCTACTAAAA-A-------
droGri2	scaffold_15072:36258-36427 +	1	ACTA---CCAATAAAATAAAAATCCAACCAATCAACCAACCAACCAACTACCCA-----------------------------------------------------CTCATCTAATGATTCCAGTGAGATATGTTTGATATTCTTGGTTGTTACATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGATTGTTG---AA-ACTCTACTAAAAACAAATCAA

[View All Possible Orthologs]

Original 12-way multiz alignment with reads super-imposed

Species

Alignment

dm3

ACTTGCCCT------------T-----CA--------------------------------------------A-------AA-CGAACTAA---------------------TTGATGGTTCCAGTGAGATATGTTTGATATTCTTGGTTGTTTCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCGCCAATCTACTAAA-------ACA

Size

Hit Count

Total Norm

droSim1

ACTTGCCCT------------T-----CA--------------------------------------------A-------AA-CGAACTAA---------------------TTGATGGTTCCAGTGAGATATGTTTGATATTCTTGGTTGTATCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCGCCAATCTACTAAA-------ACA	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
................................................................................................................................AGATATGTTTGATATTCTTGGTTG...........................................................................	24	1	16497.00	218.00	6691.00	1807.00	7781.00
................................................................................................................................AGATATGTTTGATATTCTTGGTT............................................................................	23	1	1423.00	8.00	1002.00	176.00	237.00
................................................................................................................................AGATATGTTTGATATTCTTGGTTGT..........................................................................	25	1	1402.00	18.00	817.00	136.00	431.00
................................................................................................................................AGATATGTTTGATATTCTTGGTGG...........................................................................	24	1	757.00	0.00	233.00	101.00	423.00
................................................................................................................................AGATATGTTTGATATTCTTGG..............................................................................	21	1	637.00	4.00	461.00	111.00	61.00
.........................................................................................................................................................................CCCAGGAATCAAACATATTATTA...................................	23	1	516.00	416.00	37.00	11.00	52.00
................................................................................................................................AGATATGTTTGATATTCTTG...............................................................................	20	1	510.00	10.00	442.00	23.00	35.00
.........................................................................................................................................................................CCCAGGAATCAAACATATTATT....................................	22	1	332.00	161.00	140.00	11.00	20.00
................................................................................................................................AGATATGTTTGATATTCTTGGTTGC..........................................................................	25	1	221.00	0.00	138.00	26.00	57.00
................................................................................................................................AGATATGTTTGATATTCTTGGTTGG..........................................................................	25	1	148.00	0.00	63.00	12.00	73.00
................................................................................................................................AGATATGTTTGATATTCTTGGT.............................................................................	22	1	137.00	14.00	83.00	18.00	22.00
................................................................................................................................AGATATTTTTGATATTCTTGGTTG...........................................................................	24	1	118.00	0.00	33.00	6.00	79.00
................................................................................................................................ATATATGTTTGATATTCTTGGTTG...........................................................................	24	1	73.00	0.00	22.00	5.00	46.00
................................................................................................................................AGATATGTTTGATATTCTT................................................................................	19	1	66.00	0.00	62.00	4.00	0.00
................................................................................................................................AGATATGTTTGATATTCT.................................................................................	18	1	64.00	0.00	54.00	8.00	2.00
.........................................................................................................................................................................CCCAGGAATCAAACATATTAT.....................................	21	1	56.00	4.00	46.00	3.00	3.00
................................................................................................................................AGATATGTTTGATATTCTTGGTC............................................................................	23	1	44.00	0.00	34.00	2.00	8.00
................................................................................................................................ACATATGTTTGATATTCTTGGTTG...........................................................................	24	1	43.00	0.00	17.00	4.00	22.00
................................................................................................................................AGATATGTTTGATATTCTTGGTTGA..........................................................................	25	1	39.00	2.00	29.00	5.00	3.00
................................................................................................................................AGATATxTTTGATATTCTTGGTTG...........................................................................	23	1	37.00	0.00	14.00	4.00	19.00
................................................................................................................................AGATATGTTTGATATTCTTGGAC............................................................................	23	1	36.00	0.00	30.00	4.00	2.00
................................................................................................................................AGATATGTTTGATATTCTTGGA.............................................................................	22	1	31.00	0.00	26.00	5.00	0.00
................................................................................................................................AGATATGTTTGATATTCTTGGTTGAC.........................................................................	26	1	26.00	0.00	21.00	2.00	3.00
................................................................................................................................AGATATCTTTGATATTCTTGGTTG...........................................................................	24	1	25.00	0.00	9.00	2.00	14.00
......................................................................................................................................GTTTGATATTCTTGGTTG...........................................................................	18	1	22.00	9.00	1.00	7.00	5.00
................................................................................................................................AGATATGTTTGATATTCTTGGG.............................................................................	22	1	20.00	0.00	8.00	7.00	5.00
.........................................................................................................................................................................CCCAGGAATCAAACATATTA......................................	20	1	19.00	11.00	7.00	1.00	0.00
................................................................................................................................AGATATGTTTGATATTCTTGGTG............................................................................	23	1	18.00	0.00	17.00	1.00	0.00
..................................................................................................................................ATATGTTTGATATTCTTGGTTG...........................................................................	22	1	18.00	1.00	11.00	0.00	6.00
................................................................................................................................GGATATGTTTGATATTCTTGGTTG...........................................................................	24	1	18.00	0.00	7.00	2.00	9.00
.................................................................................................................................GATATGTTTGATATTCTTGGTTG...........................................................................	23	1	17.00	1.00	7.00	2.00	7.00
................................................................................................................................AGAGATGTTTGATATTCTTGGTTG...........................................................................	24	1	17.00	0.00	8.00	2.00	7.00
................................................................................................................................AGATATGTTTGATATTCTTGGTA............................................................................	23	1	16.00	0.00	13.00	1.00	2.00
................................................................................................................................AGATATGTTTGATATTCTTGGC.............................................................................	22	1	16.00	0.00	11.00	2.00	3.00
................................................................................................................................AGATATGCTTGATATTCTTGGTTG...........................................................................	24	1	15.00	0.00	3.00	2.00	10.00
................................................................................................................................AGATATGTTTGATATTCTTGGTTT...........................................................................	24	1	15.00	11.00	3.00	0.00	1.00
....................................................................................................................................ATGTTTGATATTCTTGGTTG...........................................................................	20	1	15.00	2.00	8.00	2.00	3.00
...................................................................................................................................TATGTTTGATATTCTTGGTTG...........................................................................	21	1	14.00	0.00	3.00	3.00	8.00
................................................................................................................................AGATATGTTTGATATTCTTGGCTG...........................................................................	24	1	14.00	0.00	4.00	2.00	8.00
................................................................................................................................AGATATGTTTGATATTCTTTGTTG...........................................................................	24	1	14.00	9.00	4.00	0.00	1.00
................................................................................................................................AGATGTGTTTGATATTCTTGGTTG...........................................................................	24	1	14.00	0.00	4.00	2.00	8.00
................................................................................................................................AGGTATGTTTGATATTCTTGGTTG...........................................................................	24	1	13.00	1.00	6.00	2.00	4.00
..................................................................................................................................AGATTTTTGATATTCTTGGTTG...........................................................................	22	1	13.00	0.00	6.00	1.00	6.00
................................................................................................................................AGATATGTTTGATATTCTTGGTTGTT.........................................................................	26	1	11.00	0.00	4.00	5.00	2.00
................................................................................................................................AGATATGTTTGATATTCTTGGTCG...........................................................................	24	1	11.00	0.00	8.00	0.00	3.00
.........................................................................................................................................................................CCCAGGAATCCAACATATTATTA...................................	23	1	10.00	10.00	0.00	0.00	0.00
................................................................................................................................AGATATGGTTGATATTCTTGGTTG...........................................................................	24	1	10.00	2.00	4.00	1.00	3.00
.........................................................................................................................................................................CCCAGGAATCAAACATATTATTAA..................................	24	1	9.00	3.00	3.00	0.00	3.00
................................................................................................................................AGATATGTTTGATATTCCTGGTTG...........................................................................	24	1	9.00	0.00	3.00	2.00	4.00
................................................................................................................................AGATATGTTTTATATTCTTGGTTG...........................................................................	24	1	9.00	0.00	7.00	0.00	2.00
................................................................................................................................AGATATGTTTGATATTCTTGGTTGTC.........................................................................	26	1	8.00	0.00	4.00	1.00	3.00
................................................................................................................................AGATATGTTTGATATTTTTGGTTG...........................................................................	24	1	8.00	0.00	3.00	2.00	3.00
.........................................................................................................................................................................CCCAGGAATCAAACATATT.......................................	19	1	8.00	2.00	6.00	0.00	0.00
..................................................................................................................................AGATGTTTGATATTCTTGGTTG...........................................................................	22	1	8.00	0.00	5.00	0.00	3.00
................................................................................................................................AGATATGTTCGATATTCTTGGTTG...........................................................................	24	1	7.00	0.00	1.00	1.00	5.00
..........................................................................................................................................................................CCAGGAATCAAACATATTATT....................................	21	1	7.00	6.00	1.00	0.00	0.00
................................................................................................................................AGATATGTTTxATATTCTTGGTTG...........................................................................	23	1	7.00	0.00	6.00	1.00	0.00
................................................................................................................................AGATATTTTTGATATTCTTGGTGG...........................................................................	24	1	7.00	0.00	0.00	0.00	7.00
................................................................................................................................AGATATTTTTGATATTCTTGGTTGT..........................................................................	25	1	6.00	0.00	4.00	2.00	0.00
................................................................................................................................ATATATGTTTGATATTCTTG...............................................................................	20	1	6.00	0.00	6.00	0.00	0.00
................................................................................................................................AGATATGTTTGGTATTCTTGGTTG...........................................................................	24	1	6.00	0.00	2.00	0.00	4.00
................................................................................................................................AGATATGTTTCATATTCTTGGTTG...........................................................................	24	1	6.00	0.00	4.00	0.00	2.00
................................................................................................................................AGATACGTTTGATATTCTTGGTTG...........................................................................	24	1	6.00	0.00	3.00	0.00	3.00
.........................................................................................................................................................................CCCAGGAATCACACATATTATTA...................................	23	1	6.00	6.00	0.00	0.00	0.00
................................................................................................................................AGATATGTTxxATATTCTTGGTTG...........................................................................	22	1	6.00	0.00	0.00	1.00	5.00
..................................................................................................................................AGATGTTTGATATTCTTGGTT............................................................................	21	1	5.00	0.00	3.00	0.00	2.00
................................................................................................................................AGATATGTTTGATATTCTTGGTTA...........................................................................	24	1	5.00	0.00	0.00	2.00	3.00
................................................................................................................................AGATATGTTTGACATTCTTGGTTG...........................................................................	24	1	5.00	1.00	2.00	0.00	2.00
....................................................................................................................................ATGTTTGATATTCTTGGTT............................................................................	19	1	5.00	0.00	3.00	2.00	0.00
................................................................................................................................ATATATGTTTGATATTCTTGGTT............................................................................	23	1	5.00	0.00	4.00	0.00	1.00
................................................................................................................................AGATATGTTTGATATTCTCGGTTG...........................................................................	24	1	5.00	0.00	2.00	0.00	3.00
...............................................................................................................................CAGATATGTTTGATATTCTTGGTTG...........................................................................	25	1	5.00	1.00	2.00	0.00	2.00
................................................................................................................................ATATATGTTTGATATTCTTGGTGG...........................................................................	24	1	4.00	0.00	1.00	1.00	2.00
................................................................................................................................AGATATGTTTGATATTCTGG...............................................................................	20	1	4.00	0.00	3.00	1.00	0.00
.........................................................................................................................................................................CACAGGAATCAAACATATTATTA...................................	23	1	4.00	4.00	0.00	0.00	0.00
................................................................................................................................AGATATGTTTGCTATTCTTGGTTG...........................................................................	24	1	4.00	1.00	0.00	0.00	3.00
................................................................................................................................AGATATGTTTGATATTCTTGA..............................................................................	21	1	4.00	0.00	4.00	0.00	0.00
................................................................................................................................AAATATGTTTGATATTCTTGGTTG...........................................................................	24	1	4.00	0.00	3.00	0.00	1.00
...................................................................................................................................TATGTTTGATATTCTTGGTT............................................................................	20	1	4.00	1.00	1.00	2.00	0.00
................................................................................................................................AGATATGTTTGATATCCTTGGTTG...........................................................................	24	1	4.00	1.00	0.00	0.00	3.00
..........................................................................................................................................................................CCAGGAATCAAACATATTATTA...................................	22	1	4.00	3.00	0.00	0.00	1.00
................................................................................................................................AGATATGTTTGATGTTCTTGGTTG...........................................................................	24	1	4.00	0.00	1.00	0.00	3.00
................................................................................................................................TGATATGTTTGATATTCTTGGTTG...........................................................................	24	1	4.00	0.00	2.00	1.00	1.00
................................................................................................................................AGATATGTTTGATATTCTTGGGTG...........................................................................	24	1	4.00	1.00	2.00	0.00	1.00
................................................................................................................................AGATATGTTTGATATTCTTGGTTC...........................................................................	24	1	4.00	0.00	1.00	2.00	1.00
................................................................................................................................AGATATGTTTGATATTCC.................................................................................	18	1	3.00	0.00	3.00	0.00	0.00
................................................................................................................................AGATATGTTTGATACTCTTGGTTG...........................................................................	24	1	3.00	0.00	1.00	2.00	0.00
..................................................................................................................................AGATxTTTGATATTCTTGGTTG...........................................................................	21	1	3.00	0.00	0.00	0.00	3.00
................................................................................................................................ATATATGTTTGATATTCTTGG..............................................................................	21	1	3.00	0.00	3.00	0.00	0.00
..................................................................................................................................AGATATTTGATATTCTTGGTTG...........................................................................	22	1	3.00	0.00	3.00	0.00	0.00
................................................................................................................................AGATATGTTTGATATTCGTGG..............................................................................	21	1	3.00	0.00	0.00	2.00	1.00
................................................................................................................................AGATATGTCTGATATTCTTGGTTG...........................................................................	24	1	3.00	0.00	2.00	0.00	1.00
................................................................................................................................AGATATGxTTGATATTCTTGGTTG...........................................................................	23	1	3.00	0.00	2.00	0.00	1.00
................................................................................................................................AGATATGTTTGATATTATTGGTTG...........................................................................	24	1	3.00	1.00	1.00	0.00	1.00
................................................................................................................................AGATATGTTTAATATTCTTGGTTG...........................................................................	24	1	3.00	0.00	1.00	0.00	2.00
.................................................................................................................................AATATGTTTGATATTCTTGGTTG...........................................................................	23	1	3.00	0.00	0.00	0.00	3.00
................................................................................................................................AGATATGTTTGATATTCTTGT..............................................................................	21	1	3.00	0.00	3.00	0.00	0.00
................................................................................................................................AGACATGTTTGATATTCTTGGTTG...........................................................................	24	1	3.00	0.00	1.00	0.00	2.00
................................................................................................................................AGATATGTTTGATATTCTTGGTTGTCT........................................................................	27	1	3.00	0.00	0.00	1.00	2.00
..................................................................................................................................ATATGTTTGATATTCTTG...............................................................................	18	1	3.00	0.00	1.00	1.00	1.00
................................................................................................................................AGATATGTTTCATATTCTTGGTTGT..........................................................................	25	1	3.00	0.00	1.00	0.00	2.00

droSec1

ACTTGCCCT------------T-----CA--------------------------------------------A-------AA-TGAACTAA---------------------TTGATGGTTCCAGTGAGATATGTTTGATATTCTTGGTTGTTTCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCGCCAATCTACTAAA-------ACA	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
.........................................................................................................................................................................CCCAGGAATCAAACATATTATT....................................	22	1	557.00	39.00	133.00	385.00
.........................................................................................................................................................................CCCAGGAATCAAACATATTATTA...................................	23	1	533.00	26.00	302.00	205.00
................................................................................................................................AGATATGTTTGATATTCTTGGTTG...........................................................................	24	1	163.00	24.00	86.00	53.00
................................................................................................................................AGATATGTTTGATATTCTTGGTTGT..........................................................................	25	1	160.00	33.00	39.00	88.00
.........................................................................................................................................................................CCCAGGAATCAAACATATTAT.....................................	21	1	90.00	4.00	7.00	79.00
.........................................................................................................................................................................CCCAGGAATCAAACATATT.......................................	19	1	84.00	0.00	5.00	79.00
.........................................................................................................................................................................CCCAGGAATCAAACATATTA......................................	20	1	68.00	4.00	10.00	54.00
................................................................................................................................AGATATGTTTGATATTCTTGG..............................................................................	21	1	42.00	5.00	14.00	23.00
................................................................................................................................AGATATGTTTGATATTCTTGGT.............................................................................	22	1	35.00	8.00	4.00	23.00
................................................................................................................................AGATATGTTTGATATTCTTGGTT............................................................................	23	1	31.00	5.00	10.00	16.00
................................................................................................................................AGATATGTTTGATATTCTTG...............................................................................	20	1	25.00	0.00	5.00	20.00
................................................................................................................................AGATATGTTTGATATTCTTGGTTGA..........................................................................	25	1	25.00	5.00	2.00	18.00
................................................................................................................................AGATATGTTTGATATTCTT................................................................................	19	1	17.00	0.00	1.00	16.00
.........................................................................................................................................................................CCCAGGAATCAAACATATTATTAA..................................	24	1	10.00	1.00	3.00	6.00
..........................................................................................................................................................................CCAGGAATCAAACATATTATT....................................	21	1	8.00	1.00	2.00	5.00
....................................................................................................................................ATGTTTGATATTCTTGGTTG...........................................................................	20	1	8.00	4.00	1.00	3.00
..................................................................................................................................ATATGTTTGATATTCTTGGTTG...........................................................................	22	1	7.00	1.00	4.00	2.00
................................................................................................................................AGATATGTTTGATATTCTTGT..............................................................................	21	1	7.00	1.00	2.00	4.00
..................................................................................................................................ATATGTTTGATATTCTTGGT.............................................................................	20	1	6.00	1.00	0.00	5.00
................................................................................................................................ATATATGTTTGATATTCTTGGTTG...........................................................................	24	1	5.00	0.00	3.00	2.00
..........................................................................................................................................................................CCAGGAATCAAACATATTATTA...................................	22	1	5.00	0.00	3.00	2.00
................................................................................................................................AGATATGTTTGATATTCT.................................................................................	18	1	5.00	0.00	0.00	5.00
.........................................................................................................................................................................CCCAGGAATCAAACACATTATTA...................................	23	1	4.00	0.00	4.00	0.00
................................................................................................................................AGATATGTTTGATATTCTTGTTG............................................................................	23	1	4.00	0.00	3.00	1.00
.........................................................................................................................................................................CCCAGGAATCAAACACATTATT....................................	22	1	4.00	1.00	1.00	2.00
................................................................................................................................AGATATGTTTGATATTCTTTGTTG...........................................................................	24	1	4.00	0.00	2.00	2.00
..................................................................................................................................AGATGTTTGATATTCTTGGTTG...........................................................................	22	1	4.00	0.00	4.00	0.00
.........................................................................................................................................................................CCCAGGAATCAAACATATAATT....................................	22	1	3.00	1.00	0.00	2.00
................................................................................................................................AGATATGTTTGATATTCTTGGTTGAG.........................................................................	26	1	3.00	0.00	0.00	3.00
.........................................................................................................................................................................CCCAGGAATCAAACCTATTATT....................................	22	1	3.00	0.00	0.00	3.00
.........................................................................................................................................................................CTCAGGAATCAAACATATTATT....................................	22	1	3.00	0.00	2.00	1.00
..................................................................................................................................ATATGTTTGATATTCTTGG..............................................................................	19	1	3.00	0.00	3.00	0.00
.....................................................................................................................................TGTTTGATATTCTTGGTTG...........................................................................	19	1	3.00	1.00	1.00	1.00

droYak2

ACTAGCCCT------------T-----CA--------------------------------------------A-------AA-CGAACTAA---------------------TTGATGGTTCCAGTGAGATATGTTTGATATTCTTGGTTGTTTCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCGCCAATCTACTAAA-------ACA	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
................................................................................................................................AGATATGTTTGATATTCTTGGTTG...........................................................................	24	1	2118.00	99.00	3.00	9.00	11.00	1996.00
.........................................................................................................................................................................CCCAGGAATCAAACATATTATTA...................................	23	1	246.00	200.00	6.00	14.00	11.00	15.00
................................................................................................................................AGATATGTTTGATATTCTTGGTT............................................................................	23	1	193.00	4.00	0.00	3.00	2.00	184.00
.........................................................................................................................................................................CCCAGGAATCAAACATATTATT....................................	22	1	190.00	100.00	15.00	13.00	28.00	34.00
................................................................................................................................AGATATGTTTGATATTCTTGGTTGT..........................................................................	25	1	162.00	8.00	1.00	6.00	4.00	143.00
................................................................................................................................AGATATGTTTGATATTCTTG...............................................................................	20	1	120.00	0.00	3.00	1.00	17.00	99.00
................................................................................................................................AGATATGTTTGATATTCTTGG..............................................................................	21	1	101.00	6.00	1.00	0.00	6.00	88.00
................................................................................................................................AGATATGTTTGATATTCTTGGTGG...........................................................................	24	1	83.00	0.00	0.00	0.00	0.00	83.00
.........................................................................................................................................................................CCCAGGAATCAAACATATTAT.....................................	21	1	43.00	4.00	2.00	3.00	23.00	11.00
................................................................................................................................AGATATGTTTGATATTCTTGGT.............................................................................	22	1	32.00	2.00	0.00	7.00	2.00	21.00
................................................................................................................................AGATATTTTTGATATTCTTGGTTG...........................................................................	24	1	22.00	0.00	0.00	0.00	0.00	22.00
................................................................................................................................AGATATGTTTGATATTCTT................................................................................	19	1	18.00	0.00	5.00	0.00	4.00	9.00
.........................................................................................................................................................................CCCAGGAATCAAACATATTA......................................	20	1	14.00	6.00	2.00	0.00	3.00	3.00
................................................................................................................................AGATATGTTTGATATTCTTGGTTGA..........................................................................	25	1	12.00	5.00	1.00	1.00	1.00	4.00
................................................................................................................................AGATATGTTTGATATTCT.................................................................................	18	1	10.00	1.00	1.00	0.00	2.00	6.00
................................................................................................................................AGATATGTTTGATATTCTTGGTTGG..........................................................................	25	1	10.00	0.00	0.00	0.00	0.00	10.00
.........................................................................................................................................................................CCCAGGAATCCAACATATTATTA...................................	23	1	9.00	9.00	0.00	0.00	0.00	0.00
................................................................................................................................AGATATGTTTGATATTCTTGGTTGC..........................................................................	25	1	9.00	0.00	0.00	0.00	0.00	9.00
....................................................................................................................................ATGTTTGATATTCTTGGTTG...........................................................................	20	1	9.00	3.00	0.00	2.00	1.00	3.00
................................................................................................................................ACATATGTTTGATATTCTTGGTTG...........................................................................	24	1	7.00	0.00	0.00	0.00	0.00	7.00
................................................................................................................................AGATATGTTTGATATTCTTGGTTT...........................................................................	24	1	7.00	3.00	0.00	0.00	0.00	4.00
................................................................................................................................AGATATxTTTGATATTCTTGGTTG...........................................................................	23	1	6.00	0.00	0.00	0.00	0.00	6.00
................................................................................................................................AGATATGTTTGATATTCTTGGTC............................................................................	23	1	6.00	0.00	0.00	0.00	0.00	6.00
................................................................................................................................ATATATGTTTGATATTCTTGGTTG...........................................................................	24	1	5.00	0.00	0.00	0.00	0.00	5.00
................................................................................................................................AGATATGTTTGATATTCTTGT..............................................................................	21	1	5.00	0.00	1.00	0.00	3.00	1.00
................................................................................................................................AGATATGTTTGCTATTCTTGGTTG...........................................................................	24	1	4.00	0.00	0.00	0.00	0.00	4.00
................................................................................................................................AGGTATGTTTGATATTCTTGGTTG...........................................................................	24	1	4.00	1.00	0.00	0.00	0.00	3.00
.........................................................................................................................................................................CCCAGGAATCAAACATATT.......................................	19	1	4.00	1.00	0.00	0.00	2.00	1.00
................................................................................................................................AGATATGCTTGATATTCTTGGTTG...........................................................................	24	1	4.00	0.00	0.00	0.00	1.00	3.00
..................................................................................................................................ATATGTTTGATATTCTTGGTTG...........................................................................	22	1	3.00	0.00	0.00	0.00	0.00	3.00
.........................................................................................................................................................................CCCAGGAATCAAACATATTATTAA..................................	24	1	3.00	0.00	1.00	1.00	1.00	0.00
..........................................................................................................................................................................CCAGGAATCAAACATATTATTA...................................	22	1	3.00	2.00	0.00	0.00	0.00	1.00
..........................................................................................................................................................................CCAGGAATCAAACATATTATT....................................	21	1	3.00	2.00	0.00	0.00	0.00	1.00
................................................................................................................................AGATATGTTTGATATTCTTTGTTG...........................................................................	24	1	3.00	2.00	0.00	0.00	0.00	1.00
................................................................................................................................AGATATGTTTGATATTCTTGGTTGTT.........................................................................	26	1	3.00	1.00	0.00	0.00	1.00	1.00
................................................................................................................................AGATATCTTTGATATTCTTGGTTG...........................................................................	24	1	3.00	0.00	0.00	0.00	0.00	3.00
................................................................................................................................AGATATGTTTTATATTCTTGGTTG...........................................................................	24	1	3.00	0.00	1.00	0.00	0.00	2.00
................................................................................................................................AGATATGTTTGATATTCTTGGA.............................................................................	22	1	3.00	0.00	0.00	0.00	0.00	3.00

droEre2

ACTAGCCCT------------T-----CA--------------------------------------------A-------AT-CGAACTAA---------------------TTGATGGTTCCAGTGAGATATGTTTGATATTCTTGGTTGTTTCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTAGCCTTCGCCAATCTACTAAA-------ACA	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
.........................................................................................................................................................................CCCAGGAATCAAACATATTATT....................................	22	1	1009.00	45.00	3.00	12.00	949.00
.........................................................................................................................................................................CCCAGGAATCAAACATATTATTA...................................	23	1	864.00	94.00	1.00	17.00	752.00
................................................................................................................................AGATATGTTTGATATTCTTGGTTG...........................................................................	24	1	377.00	35.00	6.00	198.00	138.00
.........................................................................................................................................................................CCCAGGAATCAAACATATTAT.....................................	21	1	168.00	1.00	0.00	1.00	166.00
................................................................................................................................AGATATGTTTGATATTCTTGGTTGT..........................................................................	25	1	97.00	2.00	2.00	11.00	82.00
.........................................................................................................................................................................CCCAGGAATCAAACATATTA......................................	20	1	91.00	2.00	0.00	0.00	89.00
................................................................................................................................AGATATGTTTGATATTCTTGGT.............................................................................	22	1	79.00	2.00	10.00	8.00	59.00
.........................................................................................................................................................................CCCAGGAATCAAACATATT.......................................	19	1	67.00	1.00	2.00	1.00	63.00
................................................................................................................................AGATATGTTTGATATTCTTG...............................................................................	20	1	60.00	0.00	11.00	0.00	49.00
................................................................................................................................AGATATGTTTGATATTCTTGGTT............................................................................	23	1	55.00	0.00	5.00	18.00	32.00
................................................................................................................................AGATATGTTTGATATTCTTGG..............................................................................	21	1	46.00	2.00	6.00	3.00	35.00
................................................................................................................................AGATATGTTTGATATTCTTTGTTG...........................................................................	24	1	41.00	3.00	0.00	36.00	2.00
................................................................................................................................AGATATGTTTGATATTCTT................................................................................	19	1	40.00	1.00	5.00	0.00	34.00
................................................................................................................................AGATATGTTTGATATTCTTGGTTT...........................................................................	24	1	39.00	5.00	0.00	32.00	2.00
.........................................................................................................................................................................CCCAGGAATCAAACATATTATTAA..................................	24	1	26.00	0.00	0.00	0.00	26.00
.........................................................................................................................................................................CCAAGGAATCAAACATATTATT....................................	22	1	26.00	0.00	0.00	0.00	26.00
..........................................................................................................................................................................CCAGGAATCAAACATATTATT....................................	21	1	18.00	1.00	0.00	0.00	17.00
.........................................................................................................................................................................CCAAGGAATCAAACATATTATTA...................................	23	1	17.00	0.00	0.00	0.00	17.00
.........................................................................................................................................................................ACCAGGAATCAAACATATTATT....................................	22	1	17.00	0.00	0.00	0.00	17.00
................................................................................................................................AGATATGTTTGATATTCTTTGTTT...........................................................................	24	1	17.00	4.00	0.00	13.00	0.00
.........................................................................................................................................................................CACAGGAATCAAACATATTATT....................................	22	1	16.00	0.00	0.00	0.00	16.00
.........................................................................................................................................................................CCCAGTAATCAAACATATTATTA...................................	23	1	15.00	0.00	0.00	0.00	15.00
................................................................................................................................AGATATGTTTGATATTCTTGGTTGA..........................................................................	25	1	15.00	3.00	0.00	3.00	9.00
ACTAGCCCT------------T-----AA--------------------------------------------A-------AT-GGA............................................................................................................................................	18	1	15.00	12.00	0.00	0.00	3.00
................................................................................................................................AGATATGTTTGATATTCTTGTTTG...........................................................................	24	1	13.00	3.00	0.00	10.00	0.00
......................................................................................................................................GTTTGATATTCTTGGTTG...........................................................................	18	1	12.00	5.00	0.00	0.00	7.00
................................................................................................................................AGATATGTTTGATATTCTTGT..............................................................................	21	1	12.00	1.00	2.00	1.00	8.00
.........................................................................................................................................................................CCCAGGAATCAAACATATTATTC...................................	23	1	12.00	0.00	0.00	0.00	12.00
.........................................................................................................................................................................CCCAGGAATAAAACATATTATT....................................	22	1	12.00	0.00	0.00	0.00	12.00
.........................................................................................................................................................................CCCATGAATCAAACATATTATT....................................	22	1	11.00	0.00	0.00	0.00	11.00
..........................................................................................................................................................................CCAGGAATCAAACATATTATTA...................................	22	1	11.00	0.00	0.00	0.00	11.00
.........................................................................................................................................................................ACCAGGAATCAAACATATTATTA...................................	23	1	10.00	0.00	0.00	0.00	10.00
...................................................................................................................................TATGTTTGATATTCTTGGTTG...........................................................................	21	1	9.00	0.00	0.00	0.00	9.00
..................................................................................................................................ATATGTTTGATATTCTTGGT.............................................................................	20	1	9.00	0.00	0.00	0.00	9.00
.........................................................................................................................................................................CCCAGGAATCAAACATATTATTT...................................	23	1	9.00	0.00	0.00	0.00	9.00
.........................................................................................................................................................................CACAGGAATCAAACATATTATTA...................................	23	1	8.00	0.00	0.00	0.00	8.00
.........................................................................................................................................................................CCCATGAATCAAACATATTATTA...................................	23	1	8.00	0.00	0.00	0.00	8.00
.........................................................................................................................................................................CCCAGGAATCAAACATATTATTAAA.................................	25	1	8.00	0.00	0.00	0.00	8.00
.....................................................................................................................................TGTTTGATATTCTTGGTTG...........................................................................	19	1	7.00	1.00	1.00	1.00	4.00
................................................................................................................................ATATATGTTTGATATTCTTGGTTG...........................................................................	24	1	7.00	0.00	0.00	0.00	7.00
.........................................................................................................................................................................CCCAGTAATCAAACATATTATT....................................	22	1	7.00	1.00	0.00	0.00	6.00
................................................................................................................................AGATATGTTTGATATTCT.................................................................................	18	1	7.00	0.00	0.00	0.00	7.00
....................................................................................................................................ATGTTTGATATTCTTGGT.............................................................................	18	1	7.00	0.00	0.00	0.00	7.00
.........................................................................................................................................................................CCTAGGAATCAAACATATTATTA...................................	23	1	6.00	0.00	0.00	0.00	6.00
...................................................................................................................................TATGTTTGATATTCTTGGT.............................................................................	19	1	6.00	0.00	0.00	0.00	6.00
.........................................................................................................................................................................CCCAGGAATCAAAAATATTATT....................................	22	1	6.00	0.00	0.00	0.00	6.00
................................................................................................................................AGATATGTTTGATATTCTTT...............................................................................	20	1	5.00	1.00	1.00	1.00	2.00
.........................................................................................................................................................................CCCAGGAATCCAACATATTATTA...................................	23	1	5.00	1.00	0.00	1.00	3.00
..................................................................................................................................ATATGTTTGATATTCTTGGTTG...........................................................................	22	1	5.00	1.00	0.00	0.00	4.00
................................................................................................................................AGATATGTTTGATATTCTTGTTTT...........................................................................	24	1	5.00	0.00	0.00	5.00	0.00
...........................................................................................................................................................................CAGGAATCAAACATATTATT....................................	20	1	4.00	0.00	0.00	0.00	4.00
.........................................................................................................................................................................CCCAGGAATAAAACATATTATTA...................................	23	1	4.00	0.00	0.00	0.00	4.00
....................................................................................................................................ATGTTTGATATTCTTGGTTG...........................................................................	20	1	4.00	0.00	0.00	1.00	3.00
.........................................................................................................................................................................CCCAGGAATCCAACATATTATT....................................	22	1	4.00	0.00	0.00	0.00	4.00
..................................................................................................................................ATATGTTTGATATTCTTG...............................................................................	18	1	4.00	0.00	1.00	0.00	3.00
................................................................................................................................AGATATGTTTGATATTCTTGTTG............................................................................	23	1	4.00	0.00	0.00	0.00	4.00
.........................................................................................................................................................................CCCAGGAATCAAACATATTATTAT..................................	24	1	3.00	0.00	0.00	0.00	3.00
.........................................................................................................................................................................CCCAGGAATCAAACATCTTATTA...................................	23	1	3.00	1.00	0.00	0.00	2.00
.........................................................................................................................................................................CCCAGGAACCAAACATATTATT....................................	22	1	3.00	0.00	0.00	0.00	3.00
.........................................................................................................................................................................CACAGGAATCAAACATATTAT.....................................	21	1	3.00	0.00	0.00	0.00	3.00
.........................................................................................................................................................................CCAAGGAATCAAACATATTAT.....................................	21	1	3.00	0.00	0.00	0.00	3.00
.........................................................................................................................................................................TCCAGGAATCAAACATATTATTA...................................	23	1	3.00	0.00	0.00	0.00	3.00
....................................................................................................................................ATGTTTGATATTCTTGGTT............................................................................	19	1	3.00	1.00	0.00	0.00	2.00
................................................................................................................................AGATATGTTTGATATTCTTGGTTGAA.........................................................................	26	1	3.00	0.00	0.00	1.00	2.00
................................................................................................................................AGATATGTTTGATATTCTTCGTTG...........................................................................	24	1	3.00	1.00	0.00	1.00	1.00
.........................................................................................................................................................................CCCAGGAATCAAACATATTATTG...................................	23	1	3.00	0.00	0.00	0.00	3.00
.........................................................................................................................................................................CCCAGGAATCAAACATCTTATT....................................	22	1	3.00	0.00	0.00	0.00	3.00
.........................................................................................................................................................................CCCAGGAATCAAACATATTCTT....................................	22	1	3.00	2.00	0.00	0.00	1.00
................................................................................................................................AGATATGTTTGATATTCTTGGTTGG..........................................................................	25	1	3.00	0.00	0.00	1.00	2.00
................................................................................................................................AGATATGTTTGATATTCTTTGTT............................................................................	23	1	3.00	0.00	1.00	1.00	1.00
...........................................................................................................................................................................CAGGAATCAAACATATTATTA...................................	21	1	3.00	0.00	0.00	0.00	3.00
................................................................................................................................AGATATGTTTGATATTCTTTGTTTT..........................................................................	25	1	3.00	2.00	0.00	1.00	0.00

droAna3

ACTCGCCTC------------T-----CC--------------------------------------------A-------AACACAACTAA---------------------TTGATGGTTCCAGTGAGATATGTTTGATATTCTTGGTTGTTACATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACTCTCGCCAATCTACTAAA-------ATA	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
.........................................................................................................................................................................CCCAGGAATCAAACATATTATT....................................	22	1	399.00	15.00	360.00	8.00	16.00
.........................................................................................................................................................................CCCAGGAATCAAACATATTATTA...................................	23	1	398.00	12.00	373.00	4.00	9.00
................................................................................................................................AGATATGTTTGATATTCTTGGTTG...........................................................................	24	1	98.00	5.00	70.00	14.00	9.00
.........................................................................................................................................................................CCCAGGAATCAAACATATTAT.....................................	21	1	86.00	8.00	72.00	4.00	2.00
................................................................................................................................AGATATGTTTGATATTCTTGGTTGT..........................................................................	25	1	78.00	13.00	59.00	4.00	2.00
.........................................................................................................................................................................CCCAGGAATCAAACATATTA......................................	20	1	53.00	1.00	49.00	2.00	1.00
.........................................................................................................................................................................CCCAGGAATCAAACATATT.......................................	19	1	40.00	1.00	39.00	0.00	0.00
................................................................................................................................AGATATGTTTGATATTCTTGGT.............................................................................	22	1	27.00	4.00	17.00	6.00	0.00
................................................................................................................................AGATATGTTTGATATTCTTG...............................................................................	20	1	25.00	0.00	11.00	14.00	0.00
................................................................................................................................AGATATGTTTGATATTCTTGG..............................................................................	21	1	24.00	1.00	14.00	8.00	1.00
................................................................................................................................AGATATGTTTGATATTCTTGGTT............................................................................	23	1	23.00	5.00	14.00	4.00	0.00
..........................................................................................................................................................................CCAGGAATCAAACATATTATT....................................	21	1	19.00	1.00	17.00	1.00	0.00
................................................................................................................................AGATATGTTTGATATTCTT................................................................................	19	1	16.00	0.00	13.00	3.00	0.00
................................................................................................................................AGATATGTTTGATATTCTTGGTTGA..........................................................................	25	1	11.00	0.00	7.00	0.00	4.00
.........................................................................................................................................................................CCCAGGAATCAAACATATTATTAA..................................	24	1	8.00	0.00	8.00	0.00	0.00
................................................................................................................................AGATATGTTTGATATTCTTGT..............................................................................	21	1	8.00	0.00	3.00	5.00	0.00
......................................................................................................................................GTTTGATATTCTTGGTTG...........................................................................	18	1	6.00	0.00	4.00	0.00	2.00
.........................................................................................................................................................................CCCAGGAATCAAACATATTACTA...................................	23	1	5.00	0.00	4.00	0.00	1.00
................................................................................................................................AGATATGTTTGATATTCTTGGTTT...........................................................................	24	1	5.00	1.00	1.00	1.00	2.00
..........................................................................................................................................................................CCAGGAATCAAACATATTATTA...................................	22	1	5.00	1.00	4.00	0.00	0.00
.........................................................................................................................................................................CCCAGTAATCAAACATATTATT....................................	22	1	4.00	0.00	3.00	1.00	0.00
...................................................................................................................................TATGTTTGATATTCTTGGTTG...........................................................................	21	1	4.00	0.00	2.00	0.00	2.00
....................................................................................................................................ATGTTTGATATTCTTGGT.............................................................................	18	1	4.00	1.00	3.00	0.00	0.00
................................................................................................................................AGATATGTTTGATATTCTTGGTTGAA.........................................................................	26	1	3.00	0.00	1.00	1.00	1.00
...........................................................................................................................CAGTGAGATATGGTAGAT......................................................................................	18	1	3.00	2.00	0.00	0.00	1.00
.........................................................................................................................................................................ACCAGGAATCAAACATATTATT....................................	22	1	3.00	0.00	3.00	0.00	0.00
................................................................................................................................AGATATGTTTGATATTCTTGGTTGTT.........................................................................	26	1	3.00	0.00	3.00	0.00	0.00
................................................................................................................................AGATATGGTTGATATTCTTG...............................................................................	20	1	3.00	0.00	0.00	3.00	0.00
................................................................................................................................AGATATGTTTGATATTCTTGTTTG...........................................................................	24	1	3.00	0.00	0.00	0.00	3.00
................................................................................................................................AGATATGTTTGATATTCTTGTTT............................................................................	23	1	3.00	0.00	2.00	1.00	0.00

dp4

ACTAGT---------------------TA--------------------ACCCTAACTCTCATCTGCCCACAAACCAACCCAA-CGAACTAA---------------------TTGGGGATTCCAGTGAGATATGTTTGATATTCTTGGTTGTTACATTCAAGAGTTCACCCAGGAATCAAACATATTATTACTGTGATACCCGGAAATCTACTAAACCCCCAAACC	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
.........................................................................................................................................................................CCCAGGAATCAAACATATTATTA...................................	23	1	224.00	14.00	205.00	5.00	0.00
................................................................................................................................AGATATGTTTGATATTCTTGGTTG...........................................................................	24	1	202.00	10.00	109.00	18.00	65.00
.........................................................................................................................................................................CCCAGGAATCAAACATATTATT....................................	22	1	128.00	14.00	110.00	4.00	0.00
................................................................................................................................AGATATGTTTGATATTCTTG...............................................................................	20	1	39.00	1.00	11.00	26.00	1.00
................................................................................................................................AGATATGTTTGATATTCTTGG..............................................................................	21	1	32.00	1.00	8.00	20.00	3.00
................................................................................................................................AGATATGTTTGATATTCTTGGTTGT..........................................................................	25	1	32.00	5.00	19.00	6.00	2.00
................................................................................................................................AGATATGTTTGATATTCTTGGT.............................................................................	22	1	25.00	5.00	5.00	14.00	1.00
................................................................................................................................AGATATGTTTGATATTCTTGGTT............................................................................	23	1	20.00	4.00	5.00	5.00	6.00
.........................................................................................................................................................................CCCAGGAATCAAACATATTAT.....................................	21	1	14.00	5.00	3.00	5.00	1.00
................................................................................................................................AGATATGTTTGATATTCTTGT..............................................................................	21	1	11.00	0.00	1.00	10.00	0.00
......................................................................................................................................GTTTGATATTCTTGGTTG...........................................................................	18	1	10.00	0.00	9.00	1.00	0.00
.........................................................................................................................................................................CCCAGGAATCAAACATATTA......................................	20	1	8.00	1.00	4.00	3.00	0.00
.........................................................................................................................................................................CCCAGGAATCCAACATATTATTA...................................	23	1	8.00	0.00	8.00	0.00	0.00
................................................................................................................................AGATATGTTTGATATTCTTGGTTT...........................................................................	24	1	7.00	0.00	7.00	0.00	0.00
..........................................................................................................................................................................CCAGGAATCAAACATATTATT....................................	21	1	4.00	1.00	2.00	1.00	0.00
................................................................................................................................AGATATGTTTGATATTCTTGGTTGA..........................................................................	25	1	3.00	0.00	3.00	0.00	0.00
.........................................................................................................................................................................CCCAGGAATCAAACATATT.......................................	19	1	3.00	0.00	1.00	2.00	0.00

droPer1

ACTAGT---------------------TA--------------------ACCCTAACTCTCATCTGCCCACAAACCAACCCAA-CGAACTAA---------------------TTGGGGATTCCAGTGAGATATGTTTGATATTCTTGGTTGTTACATTCAAGAGTTCACCCAGGAATCAAACATATTATTACTGTGATACCCGGAAATCTACTAAACCCCCAAACC	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
................................................................................................................................AGATATGTTTGATATTCTTGGTTG...........................................................................	24	1	1031.00	3.00	13.00	20.00	25.00	970.00
................................................................................................................................AGATATGTTTGATATTCTTGGTT............................................................................	23	1	101.00	2.00	1.00	12.00	25.00	61.00
................................................................................................................................AGATATGTTTGATATTCTTG...............................................................................	20	1	77.00	0.00	4.00	26.00	43.00	4.00
.........................................................................................................................................................................CCCAGGAATCAAACATATTATT....................................	22	1	75.00	3.00	22.00	10.00	34.00	6.00
.........................................................................................................................................................................CCCAGGAATCAAACATATTATTA...................................	23	1	59.00	5.00	32.00	5.00	11.00	6.00
................................................................................................................................AGATATGTTTGATATTCTTGGTTGT..........................................................................	25	1	50.00	2.00	3.00	7.00	10.00	28.00
................................................................................................................................AGATATGTTTGATATTCTTGGTGG...........................................................................	24	1	46.00	0.00	0.00	0.00	0.00	46.00
................................................................................................................................AGATATGTTTGATATTCTTGG..............................................................................	21	1	43.00	0.00	2.00	13.00	18.00	10.00
.........................................................................................................................................................................CCCAGGAATCAAACATATTAT.....................................	21	1	33.00	1.00	0.00	7.00	24.00	1.00
................................................................................................................................AGATATGTTTGATATTCTTGGT.............................................................................	22	1	27.00	2.00	3.00	6.00	15.00	1.00
................................................................................................................................AGATATGTTTGATATTCTT................................................................................	19	1	12.00	0.00	0.00	5.00	7.00	0.00
................................................................................................................................AGATATTTTTGATATTCTTGGTTG...........................................................................	24	1	11.00	0.00	0.00	0.00	0.00	11.00
................................................................................................................................AGATATGTTTGATATTCTTGT..............................................................................	21	1	11.00	0.00	0.00	5.00	6.00	0.00
.........................................................................................................................................................................CCCAGGAATCAAACATATTA......................................	20	1	8.00	2.00	1.00	1.00	4.00	0.00
.................................................................................................................................GATATGTTTGATATTCTTGGTTG...........................................................................	23	1	6.00	0.00	0.00	0.00	0.00	6.00
................................................................................................................................ATATATGTTTGATATTCTTGGTTG...........................................................................	24	1	5.00	0.00	1.00	0.00	0.00	4.00
....................................................................................................................................ATGTTTGATATTCTTGGTTG...........................................................................	20	1	5.00	0.00	1.00	1.00	1.00	2.00
................................................................................................................................AGATATGTTTGAGATTCTTGGTTG...........................................................................	24	1	4.00	0.00	0.00	0.00	0.00	4.00
................................................................................................................................ACATATGTTTGATATTCTTGGTTG...........................................................................	24	1	4.00	0.00	0.00	0.00	0.00	4.00
...................................................................................................................................TATGTTTGATATTCTTGGT.............................................................................	19	1	3.00	1.00	1.00	1.00	0.00	0.00
......................................................................................................................................GTTTGATATTCTTGGTTG...........................................................................	18	1	3.00	0.00	1.00	0.00	0.00	2.00
.........................................................................................................................................................................CCCAGGAATCAAACATATTATTAA..................................	24	1	3.00	0.00	0.00	0.00	3.00	0.00
................................................................................................................................AGATATGTTTGATATTCTTT...............................................................................	20	1	3.00	0.00	0.00	0.00	3.00	0.00
................................................................................................................................AGATATxTTTGATATTCTTGGTTG...........................................................................	23	1	3.00	0.00	0.00	0.00	0.00	3.00

droWil1

ACTTGCCCT-------------------------------------------------CTCATCTGCCCACAAA-------AA-CGAACTAA---------------------TTGATGGTCCCAGTGAGATATGTTTGATATTCTTGGTTGTTACATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGATCGTCGG-AATCTACTAAA-------AAC	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
................................................................................................................................AGATATGTTTGATATTCTTGGTTG...........................................................................	24	1	6221.00	5.00	310.00	135.00	5771.00
.........................................................................................................................................................................CCCAGGAATCAAACATATTATTA...................................	23	1	2935.00	6.00	1739.00	1149.00	41.00
.........................................................................................................................................................................CCCAGGAATCAAACATATTATT....................................	22	1	2686.00	11.00	685.00	1916.00	74.00
................................................................................................................................AGATATGTTTGATATTCTTGGTT............................................................................	23	1	577.00	1.00	41.00	20.00	515.00
................................................................................................................................AGATATGTTTGATATTCTTGGTTGT..........................................................................	25	1	576.00	5.00	70.00	85.00	416.00
................................................................................................................................AGATATGTTTGATATTCTTGG..............................................................................	21	1	355.00	1.00	52.00	35.00	267.00
................................................................................................................................AGATATGTTTGATATTCTTG...............................................................................	20	1	265.00	0.00	16.00	26.00	223.00
.........................................................................................................................................................................CCCAGGAATCAAACATATTAT.....................................	21	1	259.00	2.00	28.00	210.00	19.00
................................................................................................................................AGATATGTTTGATATTCTTGGTGG...........................................................................	24	1	191.00	0.00	0.00	0.00	191.00
.........................................................................................................................................................................CCCAGGAATCAAACATATTA......................................	20	1	135.00	1.00	37.00	94.00	3.00
................................................................................................................................AGATATGTTTGATATTCTTGGT.............................................................................	22	1	118.00	7.00	22.00	39.00	50.00
.........................................................................................................................................................................CCCAGGAATCAAACATATT.......................................	19	1	91.00	0.00	6.00	85.00	0.00
................................................................................................................................AGATATTTTTGATATTCTTGGTTG...........................................................................	24	1	79.00	0.00	1.00	0.00	78.00
................................................................................................................................AGATATGTTTGATATTCTTGGTC............................................................................	23	1	42.00	0.00	0.00	1.00	41.00
.........................................................................................................................................................................CCCAGGAATCAAACATATTATTAA..................................	24	1	39.00	0.00	24.00	14.00	1.00
................................................................................................................................AGATATGTTTGATATTCTTGGTTGG..........................................................................	25	1	37.00	0.00	2.00	1.00	34.00
................................................................................................................................AGATATGTTTGATATTCTTGGTTGC..........................................................................	25	1	29.00	0.00	0.00	0.00	29.00
..........................................................................................................................................................................CCAGGAATCAAACATATTATT....................................	21	1	27.00	0.00	8.00	19.00	0.00
..........................................................................................................................................................................CCAGGAATCAAACATATTATTA...................................	22	1	25.00	0.00	20.00	5.00	0.00
................................................................................................................................AGATATGTTTGATATTCTTGGTTGA..........................................................................	25	1	22.00	0.00	12.00	2.00	8.00
................................................................................................................................ATATATGTTTGATATTCTTGGTTG...........................................................................	24	1	22.00	0.00	7.00	1.00	14.00
................................................................................................................................AGATATGTTTGATATTCTTGTTG............................................................................	23	1	21.00	0.00	14.00	7.00	0.00
....................................................................................................................................ATGTTTGATATTCTTGGTTG...........................................................................	20	1	19.00	1.00	12.00	5.00	1.00
................................................................................................................................AGATATGTTTGAGATTCTTGGTTG...........................................................................	24	1	19.00	0.00	0.00	0.00	19.00
................................................................................................................................AGATATGTTTGATATTCTT................................................................................	19	1	18.00	0.00	0.00	6.00	12.00
................................................................................................................................ACATATGTTTGATATTCTTGGTTG...........................................................................	24	1	16.00	0.00	0.00	0.00	16.00
................................................................................................................................AGATATxTTTGATATTCTTGGTTG...........................................................................	23	1	16.00	0.00	1.00	0.00	15.00
..................................................................................................................................ATATGTTTGATATTCTTGGTTG...........................................................................	22	1	16.00	1.00	7.00	4.00	4.00
.........................................................................................................................................................................CACAGGAATCAAACATATTATTA...................................	23	1	15.00	0.00	10.00	5.00	0.00
................................................................................................................................AGATATGTTTGATATTCTTGGTTGTT.........................................................................	26	1	15.00	0.00	1.00	0.00	14.00
................................................................................................................................AGATATGTTTGATATTCT.................................................................................	18	1	14.00	0.00	0.00	0.00	14.00
...................................................................................................................................TATGTTTGATATTCTTGGTTG...........................................................................	21	1	14.00	0.00	3.00	6.00	5.00
................................................................................................................................AGATATGTTTGAAATTCTTGGTTG...........................................................................	24	1	13.00	0.00	0.00	0.00	13.00
................................................................................................................................AGATATGTTTGATATTCTTGT..............................................................................	21	1	11.00	1.00	2.00	6.00	2.00
.........................................................................................................................................................................ACCAGGAATCAAACATATTATTA...................................	23	1	11.00	0.00	8.00	3.00	0.00
.........................................................................................................................................................................CCAAGGAATCAAACATATTATTA...................................	23	1	10.00	0.00	9.00	1.00	0.00
................................................................................................................................AGATATGTTTGATATTCTTTGTTG...........................................................................	24	1	9.00	0.00	4.00	4.00	1.00
.........................................................................................................................................................................CCCAGGAATCAAACATATTATTAAA.................................	25	1	9.00	0.00	7.00	2.00	0.00
.........................................................................................................................................................................CCCAGGAATAAAACATATTATT....................................	22	1	9.00	0.00	2.00	7.00	0.00
.........................................................................................................................................................................CCCAGGAATCAAAAATATTATT....................................	22	1	9.00	0.00	3.00	6.00	0.00
.........................................................................................................................................................................CACAGGAATCAAACATATTATT....................................	22	1	9.00	0.00	1.00	8.00	0.00
.....................................................................................................................................TGTTTGATATTCTTGGTTG...........................................................................	19	1	9.00	0.00	3.00	5.00	1.00
................................................................................................................................AGATATCTTTGATATTCTTGGTTG...........................................................................	24	1	8.00	0.00	3.00	0.00	5.00
.........................................................................................................................................................................CCAAGGAATCAAACATATTATT....................................	22	1	8.00	0.00	3.00	5.00	0.00
.........................................................................................................................................................................ACCAGGAATCAAACATATTATT....................................	22	1	7.00	0.00	4.00	3.00	0.00
................................................................................................................................AGATATGTTTGATATTCTTGGTA............................................................................	23	1	7.00	0.00	0.00	0.00	7.00
................................................................................................................................AGATATGTTTGATATTCTTGGTTC...........................................................................	24	1	7.00	0.00	0.00	0.00	7.00
.........................................................................................................................................................................CCCAGGAATCAAACATATTACT....................................	22	1	7.00	0.00	0.00	7.00	0.00
................................................................................................................................AGATATGTTTGATATTCTTGGA.............................................................................	22	1	7.00	0.00	0.00	0.00	7.00
................................................................................................................................GGATATGTTTGATATTCTTGGTTG...........................................................................	24	1	7.00	0.00	0.00	1.00	6.00
.........................................................................................................................................................................TCCAGGAATCAAACATATTATTA...................................	23	1	6.00	0.00	1.00	5.00	0.00
.........................................................................................................................................................................CTCAGGAATCAAACATATTATT....................................	22	1	6.00	0.00	2.00	4.00	0.00
................................................................................................................................AGATATGTTTGATATTCTTGGTTT...........................................................................	24	1	6.00	0.00	1.00	1.00	4.00
................................................................................................................................AGATATTTTTGATATTCTTGGTTGT..........................................................................	25	1	6.00	0.00	0.00	1.00	5.00
................................................................................................................................AGATATGTTTGATATTCTTCGTTG...........................................................................	24	1	6.00	0.00	3.00	3.00	0.00
................................................................................................................................AGATATGTTTGATATTCTTGGTG............................................................................	23	1	6.00	0.00	0.00	0.00	6.00
................................................................................................................................AGATATGCTTGATATTCTTGGTTG...........................................................................	24	1	6.00	0.00	0.00	0.00	6.00
.........................................................................................................................................................................TCCAGGAATCAAACATATTATT....................................	22	1	6.00	0.00	1.00	5.00	0.00
.........................................................................................................................................................................CCCAGAAATCAAACATATTATTA...................................	23	1	6.00	0.00	4.00	2.00	0.00
.........................................................................................................................................................................CCCAGGAATAAAACATATTATTA...................................	23	1	5.00	0.00	2.00	3.00	0.00
.........................................................................................................................................................................CCCAGGACTCAAACATATTATT....................................	22	1	5.00	0.00	0.00	5.00	0.00
.........................................................................................................................................................................CCCAGGAATCCAACATATTATTA...................................	23	1	5.00	0.00	1.00	4.00	0.00
................................................................................................................................AGATATGTTTGATATTCTTGGCTG...........................................................................	24	1	5.00	0.00	0.00	0.00	5.00
.........................................................................................................................................................................CCCAGGAATCAAACACATTATT....................................	22	1	5.00	0.00	1.00	4.00	0.00
..................................................................................................................................AGATTTTTGATATTCTTGGTTG...........................................................................	22	1	5.00	0.00	0.00	0.00	5.00
..................................................................................................................................AGATGTTTGATATTCTTGGTTG...........................................................................	22	1	5.00	0.00	0.00	0.00	5.00
.........................................................................................................................................................................CCCAGTAATCAAACATATTATT....................................	22	1	5.00	0.00	3.00	1.00	1.00
................................................................................................................................AGATATGTTTGGTATTCTTGGTTG...........................................................................	24	1	5.00	0.00	1.00	0.00	4.00
.........................................................................................................................................................................CCCAGGAATCAAGCATATTATTA...................................	23	1	5.00	0.00	3.00	2.00	0.00
................................................................................................................................AGATATGTTTTATATTCTTGGTTG...........................................................................	24	1	5.00	0.00	0.00	0.00	5.00
.........................................................................................................................................................................CCCAGGAATCAAACATATTATA....................................	22	1	5.00	0.00	2.00	3.00	0.00
.........................................................................................................................................................................CCCATGAATCAAACATATTATT....................................	22	1	5.00	0.00	2.00	3.00	0.00
.........................................................................................................................................................................CCCAGAAATCAAACATATTATT....................................	22	1	5.00	0.00	2.00	3.00	0.00
.........................................................................................................................................................................CCCAGGGATCAAACATATTATTA...................................	23	1	4.00	0.00	1.00	3.00	0.00
.........................................................................................................................................................................CCCAGGGATCAAACATATTATT....................................	22	1	4.00	0.00	0.00	4.00	0.00
................................................................................................................................AGATATGTTTGATATTCTTGGTTA...........................................................................	24	1	4.00	0.00	1.00	0.00	3.00
................................................................................................................................AGACATGTTTGATATTCTTGGTTG...........................................................................	24	1	4.00	0.00	0.00	0.00	4.00
................................................................................................................................AGATATGTTTGATATTCTTGGTCG...........................................................................	24	1	4.00	0.00	0.00	0.00	4.00
.........................................................................................................................................................................CCCAGGAATCAAACATATTATTAT..................................	24	1	4.00	0.00	1.00	2.00	1.00
................................................................................................................................ATATATGTTTGATATTCTTGGT.............................................................................	22	1	4.00	0.00	4.00	0.00	0.00
.........................................................................................................................................................................CCCAGGAATCAAACATCTTATTA...................................	23	1	4.00	0.00	1.00	3.00	0.00
.........................................................................................................................................................................CCTAGGAATCAAACATATTATTA...................................	23	1	4.00	0.00	2.00	2.00	0.00
.........................................................................................................................................................................CCCAGGAATCAAACATATTCTT....................................	22	1	4.00	0.00	2.00	2.00	0.00
................................................................................................................................ATATATGTTTGATATTCTTG...............................................................................	20	1	4.00	0.00	0.00	0.00	4.00
.........................................................................................................................................................................CCCAGGAATCAAACATCTTATT....................................	22	1	4.00	0.00	1.00	3.00	0.00
.........................................................................................................................................................................CCCAGGAATCCAACATATTATT....................................	22	1	4.00	0.00	0.00	4.00	0.00
.........................................................................................................................................................................CCCAAGAATCAAACATATTATT....................................	22	1	4.00	0.00	0.00	4.00	0.00
................................................................................................................................AGATATGTTTGATATTCTTGGTTGAA.........................................................................	26	1	4.00	0.00	4.00	0.00	0.00
.........................................................................................................................................................................CCCAGGACTCAAACATATTATTA...................................	23	1	4.00	0.00	3.00	1.00	0.00
.........................................................................................................................................................................CCCAGGAATCAAACGTATTATT....................................	22	1	3.00	0.00	1.00	2.00	0.00
................................................................................................................................AGATATCTTTGATATTCTTGGTTGT..........................................................................	25	1	3.00	0.00	1.00	0.00	2.00
.........................................................................................................................................................................CCCAGGAATCAACCATATTATT....................................	22	1	3.00	0.00	1.00	2.00	0.00
................................................................................................................................ATATATGTTTGATATTCTTGGTGG...........................................................................	24	1	3.00	0.00	0.00	0.00	3.00
.........................................................................................................................................................................CCCATGAATCAAACATATTATTA...................................	23	1	3.00	0.00	3.00	0.00	0.00
...........................................................................................................................................................................CAGGAATCAAACATATTATTA...................................	21	1	3.00	0.00	2.00	1.00	0.00
................................................................................................................................AGATATGTTCGATATTCTTGGTTG...........................................................................	24	1	3.00	0.00	1.00	0.00	2.00
.........................................................................................................................................................................CCCAAGAATCAAACATATTATTA...................................	23	1	3.00	0.00	1.00	2.00	0.00
.........................................................................................................................................................................CCCAGGAATCAAACATATTATCA...................................	23	1	3.00	0.00	2.00	1.00	0.00
..................................................................................................................................AGATxTTTGATATTCTTGGTTG...........................................................................	21	1	3.00	0.00	0.00	0.00	3.00
.........................................................................................................................................................................CCCAGGAATCAAACCTATTATTA...................................	23	1	3.00	0.00	1.00	2.00	0.00

droVir3

ACTCATCTCGAAAGGCTCGTCTTAAACCA--------------------------------------------A-------AT-CAAACTAC-----CC-CCCA----CTCATCTAATGATTCCAGTAAGATATGTTTGATATTCTTGGTTGTTACATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGATTGTTGAAACTCTACTAAA-------C--	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
................................................................................................................................AGATATGTTTGATATTCTTGGTTG...........................................................................	24	1	2123.00	15.00	10.00	198.00	771.00	1129.00
................................................................................................................................AGATATGTTTGATATTCTTGG..............................................................................	21	1	156.00	2.00	37.00	3.00	10.00	104.00
................................................................................................................................AGATATGTTTGATATTCTTGGTT............................................................................	23	1	147.00	6.00	5.00	18.00	27.00	91.00
................................................................................................................................AGATATGTTTGATATTCTTGGTTGT..........................................................................	25	1	132.00	9.00	9.00	11.00	46.00	57.00
................................................................................................................................AGATATGTTTGATATTCTTGGTC............................................................................	23	1	112.00	0.00	0.00	0.00	101.00	11.00
................................................................................................................................AGATATGTTTGATATTCTTGGTGG...........................................................................	24	1	87.00	0.00	0.00	0.00	32.00	55.00
.........................................................................................................................................................................CCCAGGAATCAAACATATTATT....................................	22	1	80.00	16.00	24.00	12.00	2.00	26.00
.........................................................................................................................................................................CCCAGGAATCAAACATATTATTA...................................	23	1	54.00	26.00	8.00	17.00	0.00	3.00
................................................................................................................................AGATATGTTTGATATTCTTG...............................................................................	20	1	45.00	1.00	13.00	0.00	0.00	31.00
................................................................................................................................AGATATGTTTGATATTCTTGGTTGTCC........................................................................	27	1	43.00	0.00	0.00	0.00	38.00	5.00
................................................................................................................................AGATATGTTTGATATTCTTTGTTG...........................................................................	24	1	36.00	0.00	0.00	36.00	0.00	0.00
................................................................................................................................AGATATGTTTGATATTCTTGGTTT...........................................................................	24	1	35.00	0.00	0.00	32.00	0.00	3.00
................................................................................................................................AGATATGTTTGATATTCTTGGTTGTC.........................................................................	26	1	35.00	0.00	0.00	0.00	24.00	11.00
................................................................................................................................AGATATGTTTGATATTCTTGGT.............................................................................	22	1	35.00	3.00	9.00	8.00	4.00	11.00
.........................................................................................................................................................................CCCAGGAATCAAACATATTAT.....................................	21	1	29.00	4.00	21.00	1.00	0.00	3.00
................................................................................................................................AGATATTTTTGATATTCTTGGTTG...........................................................................	24	1	26.00	0.00	0.00	0.00	16.00	10.00
................................................................................................................................AGATATGTTTGATATTCTT................................................................................	19	1	20.00	0.00	8.00	0.00	1.00	11.00
................................................................................................................................AGATATGTTTGATATTCTTTGTTT...........................................................................	24	1	13.00	0.00	0.00	13.00	0.00	0.00
................................................................................................................................AGATATGTTTGATATTCTTGGTTC...........................................................................	24	1	13.00	0.00	0.00	1.00	12.00	0.00
................................................................................................................................AGATATGTTTGATATTCTTGGTTGA..........................................................................	25	1	10.00	0.00	2.00	3.00	3.00	2.00
................................................................................................................................AGATATGTTTGATATTCTTGTTTG...........................................................................	24	1	10.00	0.00	0.00	10.00	0.00	0.00
................................................................................................................................ATATATGTTTGATATTCTTGGTTG...........................................................................	24	1	10.00	0.00	0.00	0.00	7.00	3.00
................................................................................................................................AGATATGTTTGATATTCTTGGTTGTCT........................................................................	27	1	9.00	0.00	0.00	0.00	8.00	1.00
................................................................................................................................AGATATGTTTGATATTCTTGGTCT...........................................................................	24	1	8.00	0.00	0.00	0.00	6.00	2.00
................................................................................................................................AGATATGTTTGATATTCTTGGTTGG..........................................................................	25	1	8.00	0.00	0.00	1.00	5.00	2.00
................................................................................................................................AGATATxTTTGATATTCTTGGTTG...........................................................................	23	1	8.00	0.00	0.00	0.00	2.00	6.00
................................................................................................................................AGATATGTTTGATATTCTTGGTTGC..........................................................................	25	1	7.00	0.00	0.00	0.00	2.00	5.00
.........................................................................................................................................................................CCCAGGAATCAAACATATT.......................................	19	1	7.00	0.00	6.00	1.00	0.00	0.00
................................................................................................................................AGATATGTTTGATATTCTTGT..............................................................................	21	1	7.00	1.00	5.00	1.00	0.00	0.00
................................................................................................................................AGATATGTTTGATATTCTTGTTTT...........................................................................	24	1	5.00	0.00	0.00	5.00	0.00	0.00
................................................................................................................................AGATATGTTTGATATTCTTGGTCG...........................................................................	24	1	5.00	0.00	0.00	1.00	4.00	0.00
................................................................................................................................AGATATGTTTGCTATTCTTGGTTG...........................................................................	24	1	5.00	0.00	0.00	1.00	1.00	3.00
....................................................................................................................................ATGTTTGATATTCTTGGTTG...........................................................................	20	1	5.00	1.00	0.00	1.00	0.00	3.00
..................................................................................................................................AGATTTTTGATATTCTTGGTTG...........................................................................	22	1	4.00	0.00	0.00	0.00	1.00	3.00
................................................................................................................................AGATATGTTTGATATTCT.................................................................................	18	1	4.00	0.00	1.00	0.00	0.00	3.00
......................................................................................................................................GTTTGATATTCTTGGTTG...........................................................................	18	1	4.00	0.00	0.00	0.00	3.00	1.00
................................................................................................................................AGATATGTTTGATATTCTTGGAC............................................................................	23	1	4.00	0.00	0.00	0.00	1.00	3.00
.........................................................................................................................................................................CCCAGGAATCAAACATATTA......................................	20	1	4.00	0.00	3.00	0.00	1.00	0.00
................................................................................................................................AGATATGTTTGATATTCTTGGA.............................................................................	22	1	4.00	0.00	1.00	0.00	1.00	2.00
..................................................................................................................................ATATGTTTGATATTCTTGGTTG...........................................................................	22	1	3.00	0.00	0.00	0.00	2.00	1.00
.................................................................................................................................GATATGTTTGATATTCTTGGTTG...........................................................................	23	1	3.00	0.00	0.00	0.00	1.00	2.00
................................................................................................................................AGATATGTTTGATATTCTTGGG.............................................................................	22	1	3.00	0.00	0.00	0.00	0.00	3.00
................................................................................................................................AGATATGTTTGATATTCTTGGTTCC..........................................................................	25	1	3.00	0.00	0.00	0.00	3.00	0.00
................................................................................................................................AGATATTTTTGATATTCTTGGTT............................................................................	23	1	3.00	0.00	0.00	1.00	0.00	2.00

droMoj3

ACCAGCCAC------------------CA--------------------------------------------A-------AA-TCAACCAAACTACCTATCCACTACCTCATCTAACGATTCCAGTGAGATATGTTTGATATTCTTGGTTGTTACATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGATCGCTTAAACTCTACTaaa-------a-a	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
.........................................................................................................................................................................CCCAGGAATCAAACATATTATTA...................................	23	1	337.00	63.00	30.00	10.00	234.00
................................................................................................................................AGATATGTTTGATATTCTTGGTTG...........................................................................	24	1	215.00	14.00	43.00	22.00	136.00
.........................................................................................................................................................................CCCAGGAATCAAACATATTATT....................................	22	1	195.00	48.00	37.00	22.00	88.00
................................................................................................................................AGATATGTTTGATATTCTTG...............................................................................	20	1	72.00	1.00	48.00	22.00	1.00
.........................................................................................................................................................................CCCAGGAATCAAACATATTAT.....................................	21	1	71.00	7.00	44.00	17.00	3.00
................................................................................................................................AGATATGTTTGATATTCTTGG..............................................................................	21	1	67.00	5.00	34.00	19.00	9.00
................................................................................................................................AGATATGTTTGATATTCTTGGTTGT..........................................................................	25	1	46.00	6.00	5.00	4.00	31.00
................................................................................................................................AGATATGTTTGATATTCTTGGTT............................................................................	23	1	32.00	7.00	16.00	6.00	3.00
................................................................................................................................AGATATGTTTGATATTCTTGGT.............................................................................	22	1	29.00	3.00	16.00	7.00	3.00
....................................................................................................................................ATGTTTGATATTCTTGGTTG...........................................................................	20	1	12.00	0.00	1.00	0.00	11.00
......................................................................................................................................GTTTGATATTCTTGGTTG...........................................................................	18	1	12.00	0.00	0.00	0.00	12.00
................................................................................................................................AGATATGTTTGATATTCTTGGTTT...........................................................................	24	1	10.00	0.00	3.00	4.00	3.00
................................................................................................................................AGATATGTTTGATATTCTT................................................................................	19	1	9.00	1.00	6.00	2.00	0.00
.........................................................................................................................................................................CCCAGGAATCAAACATATTA......................................	20	1	9.00	3.00	3.00	0.00	3.00
.........................................................................................................................................................................CCCAGGAATCCAACATATTATTA...................................	23	1	8.00	0.00	0.00	1.00	7.00
................................................................................................................................AGATATGTTTGATATTCTTTG..............................................................................	21	1	8.00	0.00	2.00	6.00	0.00
.........................................................................................................................................................................CCCAGGAATCAAACATATT.......................................	19	1	7.00	1.00	4.00	0.00	2.00
..........................................................................................................................................................................CCAGGAATCAAACATATTATTA...................................	22	1	7.00	0.00	0.00	0.00	7.00
................................................................................................................................AGATATGTTTGATATTCTTGT..............................................................................	21	1	6.00	0.00	4.00	2.00	0.00
................................................................................................................................AGATATGTTTGATATTCTTTGTTG...........................................................................	24	1	5.00	0.00	0.00	2.00	3.00
................................................................................................................................AGATATGTTTGATATTCTTT...............................................................................	20	1	4.00	0.00	0.00	4.00	0.00
.........................................................................................................................................................................CCCAGGAATCAAACATATTATTAA..................................	24	1	4.00	1.00	1.00	1.00	1.00
................................................................................................................................AGATATGTTTGATATTCTTGGTTGTC.........................................................................	26	1	3.00	1.00	1.00	0.00	1.00
...................................................................................................................................TATGTTTGATATTCTTGGTTG...........................................................................	21	1	3.00	1.00	0.00	0.00	2.00
..........................................................................................................................................................................CCAGGAATCAAACATATTATT....................................	21	1	3.00	0.00	1.00	0.00	2.00
................................................................................................................................AGATATGTTTGATATTCTTGGGTG...........................................................................	24	1	3.00	0.00	0.00	0.00	3.00
.....................................................................................................................................TGTTTGATATTCTTGGTTG...........................................................................	19	1	3.00	0.00	0.00	0.00	3.00
................................................................................................................................AGATATGTTTGATATTCTTTGTTT...........................................................................	24	1	3.00	0.00	1.00	1.00	1.00

droGri2

AACTACCAA------------T-----AAAATAAAAATccaaccaatcaacc-------------------------aac-----caacc-aacTA----CCCA----CTCATCTAATGATTCCAGTGAGATATGTTTGATATTCTTGGTTGTTACATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGATTGTTGAAACTCTACTAaa-------a-a	Size	Hit Count	Total Norm	V109 Male body
................................................................................................................................AGATATGTTTGATATTCTTGGTTG...........................................................................	24	1	2.00	2.00
................................................................................................................................AGATATGTTTGATATTCTTGG..............................................................................	21	1	2.00	2.00
.........................................................................................................................................................................CCCAGGAATCAAACATATTATT....................................	22	1	1.00	1.00
........................................................................................................................................................................ACCCAGGAATCTAACATATG.......................................	20	1	1.00	1.00
................................................................................................................................AGATATGTTTGATATTCTTGGTT............................................................................	23	1	1.00	1.00
.........................................................................................................................................................................CCCAGGAATCAAACATAATATT....................................	22	1	1.00	1.00
.........................................................................................................................................................................CCCAGGAATCAAACATATTATTA...................................	23	1	1.00	1.00

12-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droAna3	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image

20-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droEug1	droBia1	droTak1	droEle1	droRho1	droFic1	droKik1	droAna3	droBip1	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image