dme-mir-133- 12- and 20-way alignments

dme-mir-133	chr2L:20616617-20616714 +	Known_mirbase
[View on miRBase]	[View on UCSC Genome Browser {Cornell Mirror}]	intergenic

Legend:

   mature strand at position 20616673-20616694
   star strand at position 20616635-20616657
   mutations
   read mismatches
   coordinate mismatch (possible incorrect ortholog)

12-way Fast Statistical Aligner re-alignment (From MAFs)

Species	Coordinate	Alignment
dm3	chr2L:20616602-20616729 +	CA----------------------------------------------T--TCGAG-A--ATTTC--------CACCTGCAAC-ACTGTGTGTAGCTGGTTGACATCGGGTCAGATCTGTTT--T-TCAAGCATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTTGATGACAACGAAAGCCTAGTGAAC
droSim1	chr2L:20179920-20180047 +	CA----------------------------------------------T--TCAAA-A--ATCTG--------CACCTGCAAC-GCTGTGTGTAGCTGGTTGACATCGGGTCAGATCTGTTT--T-TTAAGCATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTTGCTGACATCGAAAGCCGAGGGAAC
droSec1	super_18:496867-496993 +	CA----------------------------------------------T--TCGAG-A---TTTG--------CACCTGCAAC-GCTGTGTGTAGCTGGTTGACATCGGGTCAGATCTGTTT--T-TTAAGCATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTTGCTGACATCGAAAGCCTAGCGAAC
droYak2	chr2R:6964793-6964921 +	TA----------------------------------------------T--TCCAG-A--ATTTC--------CTCCTGCAAC-GCTGTGTGTAGCTGGTTGACATCGGGTCAGATCTGTTT--TTCCAAGCATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTTGATGACAACGAAGTACGAGTAAAC
droEre2	scaffold_4845:3836606-3836722 -	T--------------------------------------------------------------TT--------CCTCTGCAAC-GCTGTGTGTAGCTGGTTGACATCGGGTCAGATCTGTTT--T-CCTAGCATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTTGATGCCAACTAAATTCGAGTGAAC
droAna3	scaffold_12916:7117509-7117634 +	T--------------------------------------------------TCGTG-A--ATGAT--------TATCTGCAAC-GCTGTATGTAGCTGGTTGACATCGGGTCAGATCTATCT--TTTCAAGCATTTGGTCCCCTTCAACCAGCTGTAG-CAGTGGTTGATGACAACAAAGTACAAGTGAAA
dp4	chr4_group3:7699995-7700122 -	TGA-----------------------------------------------CGCG---TGTGTGCT--------TATGTACAACGGCTGTATGTAGCTGGTTGACATCGGGTCAGATCTATTT--TATCAAGTATTTGGTCCCCTTCAACCAGCTGTAT-CAGTGGTTGATTCCAACAAAAAACAAAAG--G
droPer1	super_1:9145716-9145843 -	tgA-----------------------------------------------CGCG---TGTGTGCT--------TATGTACAACGGCTGTATGTAGCTGGTTGACATCGGGTCAGATCTATTT--TATCAAGTATTTGGTCCCCTTCAACCAGCTGTAT-CAGTGGTTGATTCCAACAAAAAACAAAAG--G
droWil1	scaffold_180708:2027542-2027651 +	-----------------------------------------------------------------------------TACAAC-ACTGAATGTAGCTGGTTGACATCGGGTCAGATCTATTTATT-TGAAGCATTTGGTCCCCTTCAACCAGCTGTAG-CAGTGGTTGATCCCAACAAAAAGCAA-TGGAA
droVir3	scaffold_12963:13475783-13475935 -	CAAAA-TAATAATAATATGAACCAAACGAAGATA--TATATTG-CCA-A--TCG---A---ATCA--------CATTCACAAC-GCTGTGTGTAGTTGGTTGACATCGGGTCAGATCTATTT--CTGAAAGCATTTGGTCCCCTTCAACCAGCTGTAG-CAGTGGTTGAAGCCAACAA-------------
droMoj3	scaffold_6500:24707601-24707776 +	caaaaaaaataataataataa-taataaATTCTAAAAACATGAAATAAATTGTG--TTGTGTACTCAAACAAACATCCACAAC-GCTGTGTGTAGTTGGTTGACATCGGGTCAGATCTGTTT--T-TCGAGAATTTGGTCCCCTTCAACCAGCTGTAG-CAGTGGTTGATGACAACAA--GTTGA-----G
droGri2	scaffold_15126:6389813-6389967 +	CAACT-CAATAACATTAACAAACAAACAAAACTATATACATGA-TTAAT--TT-------GAATT--------TATTTACAAC-GCTGTATGTAGCTGGTTGACATCGGGTCAGATCTATTT--ATTCGAGTATTTGGTCCCCTTCAACCAGCTGTAG-CAGTGGTTGATGTCAACAA-------------

20-way Fast Statistical Aligner re-alignment (Top LASTZ hits)

Species	Coordinate	Lastz Id	Alignment
dm3	chr2L:20616602-20616729 +	NA	CATTC--GA-GAA----------------------------------TTT--------CCACCTGCAAC-ACTGTGTGTAGCTGGTTGACATCGGGTCAGATCTGT-TTT--TCAAGCATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTTGATGACAACGAAAG-CCTA----------------GTGAAC
droSim1	chr2L:20179920-20180047 +	1	CATTC--AA-AAA----------------------------------TCT--------GCACCTGCAAC-GCTGTGTGTAGCTGGTTGACATCGGGTCAGATCTGT-TTT--TTAAGCATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTTGCTGACATCGAAAG-CCGA----------------GGGAAC
droSec1	super_18:496867-496993 +	1	CATTC--GA-G-A----------------------------------TTT--------GCACCTGCAAC-GCTGTGTGTAGCTGGTTGACATCGGGTCAGATCTGT-TTT--TTAAGCATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTTGCTGACATCGAAAG-CCTA----------------GCGAAC
droYak2	chr2R:6964793-6964921 +	1	TATTC--CA-GAA----------------------------------TTT--------CCTCCTGCAAC-GCTGTGTGTAGCTGGTTGACATCGGGTCAGATCTGT-TTTT-CCAAGCATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTTGATGACAACGAAGT-ACGA----------------GTAAAC
droEre2	scaffold_4845:3836606-3836724 -	1	ATTT-------------------------------------------------------CCTCTGCAAC-GCTGTGTGTAGCTGGTTGACATCGGGTCAGATCTGT-TTT--CCTAGCATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTTGATGCCAACTAAAT-TCGA----------------GTGAAC
droEug1	scf7180000409767:678694-678826 -	1	TTTTCCAGA-AAA----------------------------------TGA--------TTATCTGCAAC-GCTGTGTGTAGCTGGTTGACATCGGGTCAGATCTACTTTTTTCCAAGCATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTCGTTGACAACGAATT-TCGA----------------GTGAAA
droBia1	scf7180000302422:7475085-7475212 -	1	TGTTT--AA--AA----------------------------------TCA--------TTACCTGCAAC-GCTGTGTGTAGCTGGTTGACATCGGGTCAGATCTAC-TTTT-TCAAGCATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTTGCTGACAGCGGAGT-ACGA----------------GTGAAC
droTak1	scf7180000415104:189967-190095 -	1	TATTT--AA-AAA----------------------------------TGA--------TTACCTGCAAC-GCTGTGTGTAGCTGGTTGACATCGGGTCAGATCTAC-TTTT-TCAAGCATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTTGATGACAACTCGAC-ACTA----------------GTGAAC
droEle1	scf7180000491186:607671-607801 +	2	TATTA--AACAAA----------------------------------TTA--------TTACCTGCAAC-GCTGTGTGTAGCTGGTTGACATCGGGTCAGATCTAT-TTTTTCAAAGTATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTTGGTGACAACGAAAT-ACGA----------------GTGAAC
droRho1	scf7180000777920:26469-26599 +	4	TATTA--AACAAA----------------------------------TTA--------TTATCTGCAAC-GCTGTGTGTAGCTGGTTGACATCGGGTCAGATCTAT-TTTTTCCAAGCATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTTGGTGACAACGAAAT-ACGA----------------GTGAAC
droFic1	scf7180000453842:123951-124080 +	1	TATTC--AA-AAA----------------------------------TTA--------TTATCTGCAAC-GCTGTGTGTAGCTGGTTGACATCGGGTCAGATCTGT-TTTTTCCAAGCATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTTGATGACAACGAAAC-CCGA----------------GTGAAC
droKik1	scf7180000302408:807302-807430 +	1	TATTT--AA-AAT----------------------------------TTA--------TTATCTGCAAC-GCTGTATGTAGCTGGTTGACATCGGGTCAGATCTAC-TGTTTCCAAGCATTTGGTCCCCTTCAACCAGCTGTAG-CAGTGGTTGATGACAACGAAAT-ACGA----------------GTGAAC
droAna3	scaffold_12916:7117508-7117634 +	1	TT--C--GT-GAA----------------------------------TGA--------TTATCTGCAAC-GCTGTATGTAGCTGGTTGACATCGGGTCAGATCTAT-CTTT-TCAAGCATTTGGTCCCCTTCAACCAGCTGTAG-CAGTGGTTGATGACAACAAAGT-ACAA----------------GTGAAA
droBip1	scf7180000396566:293454-293581 +	1	TTTGT-----GAA----------------------------------TGA--------TTATCTGCAAC-GCTGTATGTAGCTGGTTGACATCGGGTCAGATCTAC-GTTTTTCAAGCATTTGGTCCCCTTCAACCAGCTGTAG-CAGTGGTTGATGACAACAAAGT-ACAA----------------GTGAAA
dp4	chr4_group3:7699977-7700121 -	2	GACGC--GT-GTG----------------------------------TGC--------TTATGTACAACGGCTGTATGTAGCTGGTTGACATCGGGTCAGATCTAT-TTTA-TCAAGTATTTGGTCCCCTTCAACCAGCTGTAT-CAGTGGTTGATTCCAACAAAAA-ACAAAAGGTGCCAACAAATAATAAAG
droPer1	super_1:9145698-9145865 -	2	TATTT--GT-ATGTG--TATTT---------GTATGTGACGCGTGTGTGC--------TTATGTACAACGGCTGTATGTAGCTGGTTGACATCGGGTCAGATCTAT-TTTA-TCAAGTATTTGGTCCCCTTCAACCAGCTGTAT-CAGTGGTTGATTCCAACAAAAA-ACAAAAGGCGCCAACAAATAATAAAG
droWil1	scaffold_180708:2027542-2027651 +	3	T---------------------------------------------------------------ACAAC-ACTGAATGTAGCTGGTTGACATCGGGTCAGATCTAT-TTATTTGAAGCATTTGGTCCCCTTCAACCAGCTGTAG-CAGTGGTTGATCCCAACAAAAA-GCA-----------------ATGGAA
droVir3	scaffold_12963:13475783-13475914 -	2	CAAAC--GA-AGATA--TATATTGCCAATCGAA--------------TC---------ACATTCACAAC-GCTGTGTGTAGTTGGTTGACATCGGGTCAGATCTAT-TTCT-GAAAGCATTTGGTCCCCTTCAACCAGCTGTAG-CAGTGGTTGAAGCCAACAA------------------------------
droMoj3	scaffold_6500:24707638-24707772 +	2	CATGA--AATAAA-T--TGTGT---------------------TGTGTACTCAAACAAACATCCACAAC-GCTGTGTGTAGTTGGTTGACATCGGGTCAGATCTGT-TTT--TCGAGAATTTGGTCCCCTTCAACCAGCTGTAG-CAGTGGTTGATGACAACAAGT----------------------------
droGri2	scaffold_15126:6389834-6389991 +	3	CAAAC--AA-AACTATATACATGATTAATTTGAA-------------T----------TTATTTACAAC-GCTGTATGTAGCTGGTTGACATCGGGTCAGATCTAT-TTAT-TCGAGTATTTGGTCCCCTTCAACCAGCTGTAG-CAGTGGTTGATGTCAACAAGTGAACTTAAG-----AAC-AATAGTGAAA

[View All Possible Orthologs]

Original 12-way multiz alignment with reads super-imposed

Species

Alignment

dm3

CA----------------------------------------------T--TCGAG-A--ATTTC--------CACCTGCAAC-ACTGTGTGTAGCTGGTTGACATCGGGTCAGATCTGTTT--T-TCAAGCATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTTGATGACAACGAAAGCCTAGTGAAC

Size

Hit Count

Total Norm

droSim1

CA----------------------------------------------T--TCAAA-A--ATCTG--------CACCTGCAAC-GCTGTGTGTAGCTGGTTGACATCGGGTCAGATCTGTTT--T-TTAAGCATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTTGCTGACATCGAAAGCCGAGGGAAC	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
......................................................................................................................................TTGGTCCCCTTCAACCAGCTG....................................	21	1	31156.00	94.00	28455.00	2379.00	228.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTGT...................................	22	1	25738.00	1993.00	21624.00	904.00	1217.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTGC...................................	22	1	4083.00	2.00	3799.00	104.00	178.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTGG...................................	22	1	3695.00	6.00	3250.00	168.00	271.00
.............................................................................................AGCTGGTTGACATCGGGTCAGAT...........................................................................	23	1	652.00	221.00	258.00	12.00	161.00
.......................................................................................................................................TTGTCCCCTTCAACCAGCTGT...................................	21	1	561.00	0.00	489.00	10.00	62.00
.............................................................................................AGCTGGTTGACATCGGGTCAGA............................................................................	22	1	418.00	174.00	106.00	2.00	136.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCGG....................................	21	1	285.00	1.00	246.00	34.00	4.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCT.....................................	20	1	271.00	9.00	230.00	32.00	0.00
......................................................................................................................................TTTGTCCCCTTCAACCAGCTGT...................................	22	1	211.00	1.00	182.00	2.00	26.00
.......................................................................................................................................TTGTCCCCTTCAACCAGCTG....................................	20	1	206.00	0.00	196.00	4.00	6.00
......................................................................................................................................TTCGTCCCCTTCAACCAGCTGT...................................	22	1	179.00	1.00	159.00	2.00	17.00
......................................................................................................................................TTGTTCCCCTTCAACCAGCTGT...................................	22	1	157.00	0.00	145.00	1.00	11.00
......................................................................................................................................TTGGTCCCCTTCAACCAGC......................................	19	1	141.00	0.00	125.00	10.00	6.00
......................................................................................................................................TTTGTCCCCTTCAACCAGCTG....................................	21	1	106.00	0.00	98.00	1.00	7.00
......................................................................................................................................TTGTTCCCCTTCAACCAGCTG....................................	21	1	101.00	0.00	95.00	1.00	5.00
.........................................................................................................................................GTCCCCTTCAACCAGCTGT...................................	19	1	98.00	0.00	90.00	2.00	6.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTGTT..................................	23	1	96.00	9.00	85.00	2.00	0.00
.......................................................................................................................................TTGTCCCCTTCAACCAGCTGC...................................	21	1	93.00	0.00	86.00	0.00	7.00
......................................................................................................................................TTGGTCCCCTTCAACCGGCTGT...................................	22	1	80.00	1.00	75.00	3.00	1.00
.......................................................................................................................................TTGTCCCCTTCAACCAGCTGG...................................	21	1	76.00	0.00	64.00	1.00	11.00
......................................................................................................................................TTCGTCCCCTTCAACCAGCTG....................................	21	1	64.00	0.00	58.00	1.00	5.00
......................................................................................................................................TTGGGCCCCTTCAACCAGCTGT...................................	22	1	63.00	13.00	46.00	3.00	1.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTGTA..................................	23	1	60.00	3.00	53.00	2.00	2.00
......................................................................................................................................TTGCTCCCCTTCAACCAGCTGT...................................	22	1	58.00	0.00	52.00	0.00	6.00
.............................................................................................AGCTGGTTGACATCGGGTCAG.............................................................................	21	1	56.00	15.00	25.00	5.00	11.00
......................................................................................................................................TTGGGCCCCTTCAACCAGCTG....................................	21	1	55.00	0.00	51.00	4.00	0.00
......................................................................................................................................TTGGCCCCCTTCAACCAGCTGT...................................	22	1	47.00	4.00	40.00	1.00	2.00
.........................................................................................................................................GTCCCCTTCAACCAGCTG....................................	18	1	44.00	0.00	42.00	1.00	1.00
......................................................................................................................................TTGCTCCCCTTCAACCAGCTG....................................	21	1	41.00	0.00	38.00	3.00	0.00
......................................................................................................................................TTGGCCCCCTTCAACCAGCTG....................................	21	1	41.00	0.00	40.00	1.00	0.00
.........................................................................................................................................TTCCCCTTCAACCAGCTGT...................................	19	1	41.00	0.00	39.00	0.00	2.00
......................................................................................................................................TTTGTCCCCTTCAACCAGCTGC...................................	22	1	39.00	0.00	34.00	0.00	5.00
.............................................................................................AGCTGGTTGACATCGGGTCAGG............................................................................	22	1	36.00	1.00	14.00	1.00	20.00
......................................................................................................................................TTGGTCCCCTTCAACCCGCTGT...................................	22	1	36.00	34.00	2.00	0.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCCG....................................	21	1	32.00	0.00	29.00	3.00	0.00
......................................................................................................................................TTTGTCCCCTTCAACCAGCTGG...................................	22	1	32.00	0.00	26.00	0.00	6.00
......................................................................................................................................TTGGTCCCCTTCAATCAGCTGT...................................	22	1	31.00	1.00	23.00	2.00	5.00
......................................................................................................................................TTGGTCCCCTTCAACCGGCTGG...................................	22	1	29.00	0.00	27.00	2.00	0.00
......................................................................................................................................TTCGTCCCCTTCAACCAGCTGC...................................	22	1	29.00	0.00	25.00	0.00	4.00
......................................................................................................................................TTCGTCCCCTTCAACCAGCTGG...................................	22	1	29.00	0.00	21.00	1.00	7.00
..........................................................................................................................................TCCCCTTCAACCAGCTGT...................................	18	1	29.00	0.00	26.00	1.00	2.00
......................................................................................................................................TTGTTCCCCTTCAACCAGCTGC...................................	22	1	28.00	0.00	23.00	1.00	4.00
......................................................................................................................................TTGGTCCCCTTCAACCGGCTG....................................	21	1	27.00	0.00	25.00	2.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCC.....................................	20	1	27.00	0.00	23.00	4.00	0.00
......................................................................................................................................TTGTTCCCCTTCAACCAGCTGG...................................	22	1	25.00	0.00	22.00	0.00	3.00
......................................................................................................................................TTAGTCCCCTTCAACCAGCTGT...................................	22	1	25.00	0.00	23.00	1.00	1.00
.........................................................................................................................................TTCCCCTTCAACCAGCTG....................................	18	1	23.00	0.00	22.00	1.00	0.00
......................................................................................................................................TTGGACCCCTTCAACCAGCTGT...................................	22	1	21.00	14.00	7.00	0.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTGA...................................	22	1	21.00	3.00	15.00	3.00	0.00
........................................................................................................................................TGTCCCCTTCAACCAGCTGT...................................	20	1	20.00	0.00	16.00	1.00	3.00
......................................................................................................................................TTGGTCCCCTCCAACCAGCTGT...................................	22	1	19.00	4.00	11.00	0.00	4.00
......................................................................................................................................CTGGTCCCCTTCAACCAGCTGT...................................	22	1	18.00	2.00	15.00	0.00	1.00
......................................................................................................................................TTGGTCCCCTTCAATCAGCTG....................................	21	1	18.00	0.00	16.00	2.00	0.00
.............................................................................................AGCTGGTTGACATCGGGTCAGAC...........................................................................	23	1	18.00	0.00	16.00	0.00	2.00
......................................................................................................................................TTGGTCCCCTTCAACTAGCTG....................................	21	1	18.00	0.00	18.00	0.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACCATCTGT...................................	22	1	17.00	3.00	13.00	1.00	0.00
.........................................................................................................................................GTCCCCTTCAACCAGCTGG...................................	19	1	17.00	0.00	15.00	0.00	2.00
.............................................................................................AGCTGGTTGACATCGGGTC...............................................................................	19	1	17.00	0.00	16.00	1.00	0.00
......................................................................................................................................TTGGTCCCCCTCAACCAGCTG....................................	21	1	17.00	0.00	17.00	0.00	0.00
......................................................................................................................................TTGGTCCCCCTCAACCAGCTGT...................................	22	1	17.00	0.00	17.00	0.00	0.00
......................................................................................................................................TTGGTCCCCTTCCACCAGCTGT...................................	22	1	16.00	15.00	1.00	0.00	0.00
......................................................................................................................................TTGGTCCCCTTCAGCCAGCTG....................................	21	1	16.00	0.00	15.00	1.00	0.00
......................................................................................................................................TTGGTCCCATTCAACCAGCTGT...................................	22	1	15.00	4.00	11.00	0.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACCGGCTGC...................................	22	1	15.00	0.00	14.00	0.00	1.00
.......................................................................................................................................TGGTCCCCTTCAACCAGCTG....................................	20	1	14.00	0.00	13.00	1.00	0.00
......................................................................................................................................TTGGTCCCCTTCAGCCAGCTGT...................................	22	1	14.00	2.00	10.00	0.00	2.00
.......................................................................................................................................TCGTCCCCTTCAACCAGCTGT...................................	21	1	14.00	0.00	13.00	0.00	1.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTA....................................	21	1	13.00	0.00	12.00	1.00	0.00
......................................................................................................................................TTGATCCCCTTCAACCAGCTG....................................	21	1	12.00	0.00	10.00	0.00	2.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCCGT...................................	22	1	12.00	4.00	8.00	0.00	0.00
......................................................................................................................................TTAGTCCCCTTCAACCAGCTG....................................	21	1	12.00	0.00	12.00	0.00	0.00
......................................................................................................................................TTGGTCACCTTCAACCAGCTG....................................	21	1	12.00	0.00	11.00	1.00	0.00
......................................................................................................................................TTGGTCCCCTTCAAACAGCTGT...................................	22	1	12.00	3.00	8.00	0.00	1.00
......................................................................................................................................TTGATCCCCTTCAACCAGCTGT...................................	22	1	12.00	1.00	9.00	0.00	2.00
.........................................................................................................................................GTCCCCTTCAACCAGCTGC...................................	19	1	12.00	0.00	12.00	0.00	0.00
......................................................................................................................................TTGGACCCCTTCAACCAGCTG....................................	21	1	12.00	0.00	12.00	0.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTAC...................................	22	1	12.00	0.00	12.00	0.00	0.00
......................................................................................................................................TTGCTCCCCTTCAACCAGCTGC...................................	22	1	11.00	0.00	10.00	0.00	1.00
......................................................................................................................................TTGGTCCCTTTCAACCAGCTGT...................................	22	1	11.00	1.00	7.00	3.00	0.00
......................................................................................................................................TTGCTCCCCTTCAACCAGCTGG...................................	22	1	11.00	0.00	11.00	0.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCG.....................................	20	1	11.00	0.00	9.00	2.00	0.00
......................................................................................................................................TTGGTTCCCTTCAACCAGCTGT...................................	22	1	10.00	2.00	7.00	0.00	1.00
.........................................................................................................................................TTCCCCTTCAACCAGCTGC...................................	19	1	10.00	0.00	10.00	0.00	0.00
......................................................................................................................................TTGGTCCCCTTCAAGCAGCTG....................................	21	1	10.00	0.00	10.00	0.00	0.00
......................................................................................................................................TGGGTCCCCTTCAACCAGCTGT...................................	22	1	10.00	10.00	0.00	0.00	0.00
.............................................................................................AGCTGGTTGACATCGGGTCA..............................................................................	20	1	10.00	0.00	8.00	0.00	2.00
......................................................................................................................................TTGGTCCCCTTCAAxCAGCTGT...................................	21	1	10.00	0.00	9.00	1.00	0.00
......................................................................................................................................TTGGTGCCCTTCAACCAGCTG....................................	21	1	10.00	0.00	9.00	1.00	0.00
......................................................................................................................................TTGGTCCCCxTCAACCAGCTG....................................	20	1	10.00	0.00	9.00	1.00	0.00
......................................................................................................................................TTGGTACCCTTCAACCAGCTG....................................	21	1	10.00	0.00	10.00	0.00	0.00
.......................................................................................................................................TCGTCCCCTTCAACCAGCTG....................................	20	1	10.00	0.00	10.00	0.00	0.00
......................................................................................................................................TTGGTCCCTTTCAACCAGCTG....................................	21	1	9.00	0.00	9.00	0.00	0.00
......................................................................................................................................TTGGTCCCATTCAACCAGCTG....................................	21	1	9.00	0.00	9.00	0.00	0.00
......................................................................................................................................TTGGTCCCCTTTAACCAGCTGT...................................	22	1	9.00	0.00	9.00	0.00	0.00
......................................................................................................................................TTGGTCCCCTCCAACCAGCTG....................................	21	1	9.00	0.00	8.00	1.00	0.00
......................................................................................................................................TTGGTCCCCTTCACCCAGCTGT...................................	22	1	9.00	3.00	5.00	0.00	1.00
......................................................................................................................................ATGGTCCCCTTCAACCAGCTG....................................	21	1	9.00	0.00	8.00	1.00	0.00
......................................................................................................................................TTGGTTCCCTTCAACCAGCTG....................................	21	1	9.00	0.00	8.00	1.00	0.00
......................................................................................................................................TTGGTCCCCTTCGACCAGCTGT...................................	22	1	8.00	5.00	3.00	0.00	0.00
......................................................................................................................................TTGGTCCTCTTCAACCAGCTGT...................................	22	1	8.00	0.00	7.00	0.00	1.00

droSec1

CA----------------------------------------------T--TCGAG-A---TTTG--------CACCTGCAAC-GCTGTGTGTAGCTGGTTGACATCGGGTCAGATCTGTTT--T-TTAAGCATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTTGCTGACATCGAAAGCCTAGCGAAC	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
......................................................................................................................................TTGGTCCCCTTCAACCAGCTGT...................................	22	1	104944.00	16470.00	12266.00	76208.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTG....................................	21	1	6602.00	285.00	167.00	6150.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCT.....................................	20	1	5482.00	201.00	24.00	5257.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTGTT..................................	23	1	1434.00	126.00	50.00	1258.00
.............................................................................................AGCTGGTTGACATCGGGTCAGAT...........................................................................	23	1	1344.00	109.00	635.00	600.00
......................................................................................................................................TTGGTCCCCTTCAACCAG.......................................	18	1	1019.00	126.00	63.00	830.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTGA...................................	22	1	562.00	82.00	4.00	476.00
.............................................................................................AGCTGGTTGACATCGGGTCAGA............................................................................	22	1	456.00	14.00	329.00	113.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTGTA..................................	23	1	289.00	23.00	12.00	254.00
......................................................................................................................................TTGGTCCCCTTCAACCAGATGT...................................	22	1	240.00	139.00	2.00	99.00
......................................................................................................................................TTGGTCACCTTCAACCAGCTGT...................................	22	1	206.00	3.00	4.00	199.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTGC...................................	22	1	202.00	37.00	32.00	133.00
......................................................................................................................................TTGGTCCACTTCAACCAGCTGT...................................	22	1	180.00	3.00	3.00	174.00
......................................................................................................................................TTGGTCCCATTCAACCAGCTGT...................................	22	1	166.00	7.00	7.00	152.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCCGT...................................	22	1	150.00	16.00	15.00	119.00
......................................................................................................................................TTGGCCCCCTTCAACCAGCTGT...................................	22	1	147.00	27.00	27.00	93.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTT....................................	21	1	147.00	9.00	0.00	138.00
.......................................................................................................................................TTGTCCCCTTCAACCAGCTGT...................................	21	1	136.00	10.00	25.00	101.00
......................................................................................................................................TTGGTCCCCTTCAACCGGCTGT...................................	22	1	127.00	24.00	11.00	92.00
......................................................................................................................................TTGGTCCCCTTCAACCAGTTGT...................................	22	1	122.00	79.00	24.00	19.00
......................................................................................................................................TTTGTCCCCTTCAACCAGCTGT...................................	22	1	122.00	15.00	9.00	98.00
......................................................................................................................................TTGGTACCCTTCAACCAGCTGT...................................	22	1	115.00	7.00	1.00	107.00
......................................................................................................................................TTGGTCCCCCTCAACCAGCTGT...................................	22	1	108.00	14.00	21.00	73.00
......................................................................................................................................TTGGTCCTCTTCAACCAGCTGT...................................	22	1	107.00	1.00	60.00	46.00
......................................................................................................................................TTGGTCCCCTTCAACCACCTGT...................................	22	1	105.00	18.00	17.00	70.00
......................................................................................................................................TTGGTCCCCTTCAACCATCTGT...................................	22	1	104.00	18.00	8.00	78.00
......................................................................................................................................TTGTTCCCCTTCAACCAGCTGT...................................	22	1	104.00	16.00	15.00	73.00
......................................................................................................................................TTGGTCCCCTTCAACTAGCTGT...................................	22	1	100.00	9.00	43.00	48.00
.....................................................................................................................................CTTGGTCCCCTTCAACCAGCTGT...................................	23	1	99.00	7.00	11.00	81.00
.......................................................................................................................................TGGTCCCCTTCAACCAGCTGT...................................	21	1	96.00	8.00	18.00	70.00
......................................................................................................................................TTGGTCCCCTTCAACCCGCTGT...................................	22	1	93.00	13.00	12.00	68.00
......................................................................................................................................CTGGTCCCCTTCAACCAGCTGT...................................	22	1	91.00	17.00	9.00	65.00
......................................................................................................................................TTGGTCCCCTTCAGCCAGCTGT...................................	22	1	90.00	4.00	15.00	71.00
......................................................................................................................................TTGGTCCCCTTCAACCAGGTGT...................................	22	1	89.00	80.00	0.00	9.00
......................................................................................................................................TCGGTCCCCTTCAACCAGCTGT...................................	22	1	86.00	17.00	11.00	58.00
......................................................................................................................................TTGATCCCCTTCAACCAGCTGT...................................	22	1	85.00	8.00	9.00	68.00
......................................................................................................................................TTGGTCCCCTTCGACCAGCTGT...................................	22	1	84.00	10.00	19.00	55.00
......................................................................................................................................TTGGTCCCCTTCAATCAGCTGT...................................	22	1	84.00	11.00	37.00	36.00
.............................................................................................AGCTGGTTGACATCGGGTCAG.............................................................................	21	1	84.00	3.00	19.00	62.00
......................................................................................................................................TTCGTCCCCTTCAACCAGCTGT...................................	22	1	82.00	11.00	4.00	67.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCAGT...................................	22	1	82.00	0.00	0.00	82.00
......................................................................................................................................TTGGTTCCCTTCAACCAGCTGT...................................	22	1	79.00	12.00	33.00	34.00
......................................................................................................................................TTGGTCCCCTCCAACCAGCTGT...................................	22	1	78.00	13.00	12.00	53.00
......................................................................................................................................TTGGTCCCTTTCAACCAGCTGT...................................	22	1	78.00	8.00	36.00	34.00
......................................................................................................................................TTGCTCCCCTTCAACCAGCTGT...................................	22	1	75.00	2.00	13.00	60.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTGTTT.................................	24	1	74.00	3.00	0.00	71.00
......................................................................................................................................TTGGTCCCCTTTAACCAGCTGT...................................	22	1	72.00	9.00	32.00	31.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTGTC..................................	23	1	69.00	10.00	3.00	56.00
......................................................................................................................................TTGGTCCCCATCAACCAGCTGT...................................	22	1	66.00	2.00	3.00	61.00
......................................................................................................................................TTGGTCCCCTTCAACCAACTGT...................................	22	1	62.00	7.00	3.00	52.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTTT...................................	22	1	59.00	2.00	8.00	49.00
......................................................................................................................................TTGGTCCCCTTCAACAAGCTGT...................................	22	1	55.00	6.00	12.00	37.00
......................................................................................................................................TTAGTCCCCTTCAACCAGCTGT...................................	22	1	54.00	10.00	5.00	39.00
......................................................................................................................................ATGGTCCCCTTCAACCAGCTGT...................................	22	1	54.00	4.00	3.00	47.00
......................................................................................................................................TTGGTCTCCTTCAACCAGCTGT...................................	22	1	52.00	4.00	12.00	36.00
......................................................................................................................................TTGGTCCCCTTAAACCAGCTGT...................................	22	1	50.00	7.00	3.00	40.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTAT...................................	22	1	47.00	3.00	5.00	39.00
......................................................................................................................................TAGGTCCCCTTCAACCAGCTGT...................................	22	1	47.00	1.00	1.00	45.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTCT...................................	22	1	42.00	5.00	9.00	28.00
......................................................................................................................................TTGGTCCCCTTCCACCAGCTGT...................................	22	1	42.00	5.00	9.00	28.00
......................................................................................................................................TTGGACCCCTTCAACCAGCTGT...................................	22	1	41.00	6.00	3.00	32.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTGG...................................	22	1	39.00	9.00	2.00	28.00
........................................................................................................................................GGTCCCCTTCAACCAGCTGT...................................	20	1	37.00	8.00	3.00	26.00
......................................................................................................................................GTGGTCCCCTTCAACCAGCTGT...................................	22	1	36.00	5.00	0.00	31.00
......................................................................................................................................TTGGTxCCCTTCAACCAGCTGT...................................	21	1	33.00	2.00	8.00	23.00
......................................................................................................................................TTGGTCCCCTTCAAACAGCTGT...................................	22	1	31.00	2.00	13.00	16.00
......................................................................................................................................TTGGTCCCCTTCACCCAGCTGT...................................	22	1	31.00	3.00	0.00	28.00
......................................................................................................................................TTGGTCCCCTTCAACCTGCTGT...................................	22	1	30.00	3.00	14.00	13.00
.......................................................................................................................................TTGTCCCCTTCAACCAGCTG....................................	20	1	28.00	0.00	0.00	28.00
......................................................................................................................................TTGGGCCCCTTCAACCAGCTGT...................................	22	1	28.00	6.00	5.00	17.00
.........................................................................................................................................TTCCCCTTCAACCAGCTGT...................................	19	1	25.00	2.00	1.00	22.00
......................................................................................................................................TTGGTCCCCTTCAACCTGT......................................	19	1	23.00	1.00	5.00	17.00
......................................................................................................................................TTGGTCCCCTACAACCAGCTGT...................................	22	1	23.00	2.00	5.00	16.00
.........................................................................................................................................GTCCCCTTCAACCAGCTGT...................................	19	1	23.00	2.00	3.00	18.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCGGT...................................	22	1	19.00	4.00	3.00	12.00
..........................................................................................................................................TCCCCTTCAACCAGCTGT...................................	18	1	19.00	0.00	2.00	17.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTA....................................	21	1	19.00	2.00	0.00	17.00
......................................................................................................................................TTGGTCCCCTTCAACGAGCTGT...................................	22	1	18.00	0.00	4.00	14.00
......................................................................................................................................TTGGTCCCATTCAACCAGCTG....................................	21	1	17.00	2.00	0.00	15.00
......................................................................................................................................TTGGTACCCTTCAACCAGCTGA...................................	22	1	17.00	0.00	0.00	17.00
......................................................................................................................................TTGGTCCACTTCAACCAGCTG....................................	21	1	17.00	0.00	0.00	17.00
......................................................................................................................................TTCGTCCCCTTCAACCAGCTG....................................	21	1	16.00	0.00	0.00	16.00
.............................................................................................AGCTGGTTGACATCGGGTCA..............................................................................	20	1	16.00	4.00	0.00	12.00
......................................................................................................................................TTGTTCCCCTTCAACCAGCTG....................................	21	1	16.00	0.00	1.00	15.00
......................................................................................................................................TTGGTCCCCTTCAACCAGC......................................	19	1	16.00	0.00	0.00	16.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTGTGGTC...............................	26	1	16.00	1.00	11.00	4.00
......................................................................................................................................TTTGTCCCCTTCAACCAGCTG....................................	21	1	16.00	1.00	0.00	15.00
......................................................................................................................................TTGCTCCCCTTCAACCAGCTG....................................	21	1	15.00	0.00	0.00	15.00
......................................................................................................................................TTGGTCCACTTCAACCAGCT.....................................	20	1	15.00	0.00	0.00	15.00
......................................................................................................................................TTGGTCCCCTTCTACCAGCTGT...................................	22	1	14.00	3.00	8.00	3.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCCG....................................	21	1	14.00	0.00	0.00	14.00
......................................................................................................................................TTGGTCCCCTTGAACCAGCTGT...................................	22	1	14.00	1.00	0.00	13.00
......................................................................................................................................TTGGTACCCTTCAACCAGCT.....................................	20	1	14.00	0.00	0.00	14.00
......................................................................................................................................TTGGTGCCCTTCAACCAGCTGT...................................	22	1	14.00	0.00	3.00	11.00
......................................................................................................................................TTGGTCCCAATCAACCAGCTGT...................................	22	1	13.00	0.00	0.00	13.00
......................................................................................................................................TTGGTCGCCTTCAACCAGCTGT...................................	22	1	13.00	3.00	0.00	10.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTGTAT.................................	24	1	13.00	0.00	1.00	12.00
......................................................................................................................................TTGGTCCCATTCAACCAGCT.....................................	20	1	12.00	0.00	0.00	12.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCAG....................................	21	1	12.00	0.00	0.00	12.00
......................................................................................................................................TTGGTCCCCTTCAACCAGAT.....................................	20	1	12.00	1.00	0.00	11.00
......................................................................................................................................TTGGTCCCCCTCAACCAGCTG....................................	21	1	12.00	2.00	0.00	10.00

droYak2

TA----------------------------------------------T--TCCAG-A--ATTTC--------CTCCTGCAAC-GCTGTGTGTAGCTGGTTGACATCGGGTCAGATCTGTTT--TTCCAAGCATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTTGATGACAACGAAGTACGAGTAAAC	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
......................................................................................................................................TTGGTCCCCTTCAACCAGCTGT...................................	22	1	109676.00	1252.00	37982.00	10993.00	52500.00	6949.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTG....................................	21	1	7407.00	51.00	1447.00	177.00	1888.00	3844.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTGC...................................	22	1	1792.00	2.00	108.00	31.00	304.00	1347.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCT.....................................	20	1	1775.00	1.00	660.00	90.00	974.00	50.00
......................................................................................................................................TTGGTCCCCTTCAACCCGCTGT...................................	22	1	1532.00	20.00	599.00	4.00	906.00	3.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTGTT..................................	23	1	1311.00	5.00	535.00	62.00	686.00	23.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTGG...................................	22	1	1305.00	3.00	52.00	4.00	65.00	1181.00
......................................................................................................................................TTGGGCCCCTTCAACCAGCTGT...................................	22	1	808.00	3.00	147.00	19.00	631.00	8.00
......................................................................................................................................TTGGTCCCCTTCACCCAGCTGT...................................	22	1	807.00	2.00	52.00	0.00	753.00	0.00
......................................................................................................................................TTGGTCCCCTTCCACCAGCTGT...................................	22	1	739.00	10.00	275.00	11.00	443.00	0.00
.............................................................................................AGCTGGTTGACATCGGGTCAGAT...........................................................................	23	1	525.00	114.00	111.00	21.00	173.00	106.00
......................................................................................................................................TGGGTCCCCTTCAACCAGCTGT...................................	22	1	389.00	2.00	86.00	8.00	293.00	0.00
......................................................................................................................................TTGGACCCCTTCAACCAGCTGT...................................	22	1	339.00	2.00	29.00	11.00	293.00	4.00
......................................................................................................................................TTGGCCCCCTTCAACCAGCTGT...................................	22	1	310.00	3.00	57.00	35.00	206.00	9.00
......................................................................................................................................TTGGTCCCCTTCAACCAG.......................................	18	1	270.00	2.00	94.00	45.00	128.00	1.00
.............................................................................................AGCTGGTTGACATCGGGTCAGA............................................................................	22	1	260.00	115.00	12.00	4.00	46.00	83.00
......................................................................................................................................TTGGTCCCCTTCTACCAGCTGT...................................	22	1	256.00	4.00	68.00	3.00	181.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACCATCTGT...................................	22	1	211.00	1.00	77.00	15.00	115.00	3.00
......................................................................................................................................TTAGTCCCCTTCAACCAGCTGT...................................	22	1	204.00	0.00	149.00	1.00	49.00	5.00
......................................................................................................................................TTGGTCCCCTTCGACCAGCTGT...................................	22	1	200.00	3.00	71.00	10.00	115.00	1.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTGTA..................................	23	1	186.00	1.00	65.00	6.00	95.00	19.00
......................................................................................................................................TTGCTCCCCTTCAACCAGCTGT...................................	22	1	168.00	0.00	51.00	8.00	90.00	19.00
......................................................................................................................................TTGGTCACCTTCAACCAGCTGT...................................	22	1	162.00	3.00	41.00	2.00	107.00	9.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTTT...................................	22	1	150.00	1.00	57.00	8.00	84.00	0.00
......................................................................................................................................CTGGTCCCCTTCAACCAGCTGT...................................	22	1	150.00	1.00	48.00	5.00	94.00	2.00
......................................................................................................................................TTGGTCCCCTTCAGCCAGCTGT...................................	22	1	147.00	2.00	46.00	5.00	91.00	3.00
......................................................................................................................................TTGGTCCCCCTCAACCAGCTGT...................................	22	1	142.00	2.00	52.00	6.00	81.00	1.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCCGT...................................	22	1	141.00	1.00	53.00	13.00	72.00	2.00
......................................................................................................................................TTGGTCCCCTTCAACAAGCTGT...................................	22	1	135.00	0.00	36.00	3.00	95.00	1.00
......................................................................................................................................TTGGTACCCTTCAACCAGCTGT...................................	22	1	130.00	1.00	36.00	3.00	90.00	0.00
......................................................................................................................................TTGGTCCCCTCCAACCAGCTGT...................................	22	1	130.00	1.00	48.00	10.00	68.00	3.00
.......................................................................................................................................TTGTCCCCTTCAACCAGCTGT...................................	21	1	124.00	0.00	4.00	6.00	0.00	114.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTCT...................................	22	1	122.00	0.00	41.00	4.00	77.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACCACCTGT...................................	22	1	121.00	0.00	8.00	10.00	102.00	1.00
......................................................................................................................................TTTGTCCCCTTCAACCAGCTGT...................................	22	1	121.00	0.00	35.00	5.00	27.00	54.00
......................................................................................................................................TTGGTCCCCGTCAACCAGCTGT...................................	22	1	120.00	2.00	36.00	1.00	81.00	0.00
......................................................................................................................................TTGGTCCCCTGCAACCAGCTGT...................................	22	1	118.00	1.00	29.00	0.00	88.00	0.00
......................................................................................................................................TTGGTCCCCTTCAAACAGCTGT...................................	22	1	113.00	4.00	45.00	3.00	61.00	0.00
......................................................................................................................................TTGATCCCCTTCAACCAGCTGT...................................	22	1	113.00	1.00	42.00	8.00	61.00	1.00
......................................................................................................................................TTGGTCCCCTTCAACCGGCTGT...................................	22	1	111.00	1.00	35.00	8.00	63.00	4.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTGA...................................	22	1	111.00	1.00	51.00	14.00	42.00	3.00
......................................................................................................................................TTGGTCCCATTCAACCAGCTGT...................................	22	1	110.00	4.00	30.00	5.00	69.00	2.00
......................................................................................................................................TTGGTCCACTTCAACCAGCTGT...................................	22	1	106.00	1.00	34.00	3.00	65.00	3.00
.....................................................................................................................................CTTGGTCCCCTTCAACCAGCTGT...................................	23	1	104.00	0.00	28.00	9.00	65.00	2.00
......................................................................................................................................TTGGTCCCCTTCACCCCGCTGT...................................	22	1	100.00	0.00	10.00	0.00	90.00	0.00
......................................................................................................................................TCGGTCCCCTTCAACCAGCTGT...................................	22	1	99.00	3.00	40.00	10.00	46.00	0.00
......................................................................................................................................TTGGTCCCCTTCATCCAGCTGT...................................	22	1	98.00	1.00	7.00	0.00	90.00	0.00
......................................................................................................................................TTGTTCCCCTTCAACCAGCTGT...................................	22	1	96.00	0.00	9.00	8.00	38.00	41.00
......................................................................................................................................TTGGTCCCCTTCAACCTGCTGT...................................	22	1	92.00	2.00	10.00	0.00	78.00	2.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTGTC..................................	23	1	90.00	0.00	30.00	7.00	53.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACCAGATGT...................................	22	1	87.00	1.00	34.00	3.00	48.00	1.00
......................................................................................................................................TTGGTCCTCTTCAACCAGCTGT...................................	22	1	83.00	0.00	33.00	3.00	46.00	1.00
......................................................................................................................................ATGGTCCCCTTCAACCAGCTGT...................................	22	1	82.00	1.00	26.00	2.00	52.00	1.00
......................................................................................................................................TTGGTCCCTTTCAACCAGCTGT...................................	22	1	79.00	1.00	29.00	5.00	42.00	2.00
......................................................................................................................................TTGGTCTCCTTCAACCAGCTGT...................................	22	1	78.00	0.00	24.00	4.00	49.00	1.00
.......................................................................................................................................TGGTCCCCTTCAACCAGCTGT...................................	21	1	76.00	0.00	23.00	8.00	43.00	2.00
......................................................................................................................................TTGGTCCCCTTCAATCAGCTGT...................................	22	1	75.00	0.00	15.00	6.00	43.00	11.00
......................................................................................................................................TTGGGCCCCTGCAACCAGCTGT...................................	22	1	71.00	0.00	21.00	0.00	50.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTAT...................................	22	1	71.00	1.00	48.00	2.00	18.00	2.00
......................................................................................................................................TTGGTCCCCTTCCACCCGCTGT...................................	22	1	70.00	0.00	27.00	0.00	43.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACTAGCTGT...................................	22	1	66.00	1.00	24.00	2.00	36.00	3.00
......................................................................................................................................TTGCACCCCTTCAACCAGCTGT...................................	22	1	62.00	0.00	8.00	0.00	54.00	0.00
......................................................................................................................................TTGGTGCCCTTCAACCAGCTGT...................................	22	1	61.00	0.00	9.00	2.00	50.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACCAACTGT...................................	22	1	60.00	2.00	25.00	8.00	22.00	3.00
......................................................................................................................................TTCGTCCCCTTCAACCAGCTGT...................................	22	1	59.00	0.00	10.00	7.00	19.00	23.00
......................................................................................................................................TTGGTCCCCTTCAACCCGCTG....................................	21	1	56.00	0.00	25.00	0.00	27.00	4.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCGGT...................................	22	1	56.00	0.00	13.00	2.00	39.00	2.00
......................................................................................................................................TGGGTCCCCTTCTACCAGCTGT...................................	22	1	53.00	0.00	16.00	0.00	37.00	0.00
......................................................................................................................................TTGGTTCCCTTCAACCAGCTGT...................................	22	1	52.00	1.00	18.00	5.00	25.00	3.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTGTTT.................................	24	1	52.00	0.00	21.00	2.00	29.00	0.00
.............................................................................................AGCTGGTTGACATCGGGTCAG.............................................................................	21	1	52.00	16.00	13.00	0.00	15.00	8.00
......................................................................................................................................TTGGTCCCCTTCCCCCAGCTGT...................................	22	1	49.00	0.00	2.00	0.00	47.00	0.00
......................................................................................................................................TTGGGCCCCTTCCACCAGCTGT...................................	22	1	45.00	0.00	9.00	0.00	36.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACCCGCT.....................................	20	1	44.00	0.00	14.00	0.00	30.00	0.00
......................................................................................................................................TTGGTCCCCTTAAACCAGCTGT...................................	22	1	42.00	0.00	16.00	3.00	22.00	1.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTT....................................	21	1	42.00	0.00	17.00	1.00	24.00	0.00
......................................................................................................................................TTGGTCCCCTTTAACCAGCTGT...................................	22	1	41.00	0.00	20.00	5.00	15.00	1.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCGG....................................	21	1	40.00	0.00	0.00	0.00	4.00	36.00
......................................................................................................................................TTGGTCCGCTTCAACCAGCTGT...................................	22	1	40.00	1.00	10.00	0.00	27.00	2.00
......................................................................................................................................TTGGTCCCCTTCAACCAGC......................................	19	1	39.00	0.00	2.00	0.00	4.00	33.00
......................................................................................................................................TTGGTCCCCTTCAACCCGCTGC...................................	22	1	39.00	0.00	15.00	0.00	21.00	3.00
......................................................................................................................................TTGGTCCCCTTCCACCAGCTG....................................	21	1	38.00	0.00	15.00	0.00	23.00	0.00
......................................................................................................................................GTGGTCCCCTTCAACCAGCTGT...................................	22	1	37.00	0.00	10.00	3.00	24.00	0.00
......................................................................................................................................TTGGTCCCCTTCTACCTGCTGT...................................	22	1	37.00	0.00	4.00	0.00	33.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACCAGTTGT...................................	22	1	37.00	1.00	7.00	3.00	24.00	2.00
......................................................................................................................................TTGGGCACCTTCAACCAGCTGT...................................	22	1	36.00	0.00	6.00	0.00	30.00	0.00
......................................................................................................................................TGGGTCCCCTGCAACCAGCTGT...................................	22	1	35.00	0.00	13.00	0.00	22.00	0.00
......................................................................................................................................TGGGACCCCTTCAACCAGCTGT...................................	22	1	33.00	0.00	3.00	0.00	30.00	0.00
......................................................................................................................................TTGGGCCCCTTCAACCAGCTG....................................	21	1	32.00	0.00	3.00	2.00	22.00	5.00
......................................................................................................................................TTGGTCCCCTTCACCCAGCTG....................................	21	1	31.00	0.00	1.00	0.00	30.00	0.00
......................................................................................................................................TTGGACACCTTCAACCAGCTGT...................................	22	1	30.00	0.00	9.00	0.00	21.00	0.00
......................................................................................................................................TTGGGCCCCTTCAACCAGCTGC...................................	22	1	30.00	0.00	7.00	0.00	22.00	1.00
......................................................................................................................................TAGGTCCCCTTCAACCAGCTGT...................................	22	1	30.00	0.00	10.00	2.00	17.00	1.00
........................................................................................................................................GGTCCCCTTCAACCAGCTGT...................................	20	1	29.00	1.00	4.00	5.00	19.00	0.00
......................................................................................................................................TTGGGCCCCGTCAACCAGCTGT...................................	22	1	29.00	0.00	7.00	0.00	22.00	0.00
......................................................................................................................................TTGCTCCCCTTCTACCAGCTGT...................................	22	1	29.00	0.00	8.00	0.00	21.00	0.00
......................................................................................................................................TGGGTCCCCGTCAACCAGCTGT...................................	22	1	27.00	0.00	3.00	0.00	24.00	0.00
......................................................................................................................................TTGGCCCCCTTCAACCAGCTGC...................................	22	1	26.00	0.00	3.00	0.00	21.00	2.00
......................................................................................................................................TTGGGCCCCTTCAACCCGCTGT...................................	22	1	26.00	0.00	6.00	0.00	20.00	0.00
......................................................................................................................................TTGGTCGCCTTCAACCAGCTGT...................................	22	1	26.00	0.00	6.00	0.00	17.00	3.00
......................................................................................................................................ATGGGCCCCTTCAACCAGCTGT...................................	22	1	25.00	0.00	4.00	0.00	21.00	0.00

droEre2

T--------------------------------------------------------------TT--------CCTCTGCAAC-GCTGTGTGTAGCTGGTTGACATCGGGTCAGATCTGTTT--T-CCTAGCATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTTGATGCCAACTAAATTCGAGTGAAC	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
......................................................................................................................................TTGGTCCCCTTCAACCAGCTGT...................................	22	1	125379.00	1543.00	26894.00	1062.00	95880.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTG....................................	21	1	8130.00	82.00	1357.00	17.00	6674.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCT.....................................	20	1	3667.00	11.00	400.00	1.00	3255.00
......................................................................................................................................TTGGTCCCATTCAACCAGCTGT...................................	22	1	2501.00	1.00	15.00	3.00	2482.00
......................................................................................................................................TTGGTCCACTTCAACCAGCTGT...................................	22	1	2137.00	1.00	24.00	0.00	2112.00
.............................................................................................AGCTGGTTGACATCGGGTCAGAT...........................................................................	23	1	1485.00	88.00	92.00	0.00	1305.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTGTT..................................	23	1	1282.00	7.00	312.00	14.00	949.00
......................................................................................................................................TTGGTCCCCTTCAACCAG.......................................	18	1	1270.00	4.00	149.00	5.00	1112.00
......................................................................................................................................TTTGTCCCCTTCAACCAGCTGT...................................	22	1	1242.00	7.00	16.00	2.00	1217.00
......................................................................................................................................TTGGTCACCTTCAACCAGCTGT...................................	22	1	1000.00	1.00	29.00	2.00	968.00
......................................................................................................................................TTGGTACCCTTCAACCAGCTGT...................................	22	1	717.00	1.00	24.00	0.00	692.00
......................................................................................................................................TTGGTCCCCTTCAACAAGCTGT...................................	22	1	618.00	2.00	47.00	0.00	569.00
......................................................................................................................................TTGGTCCCCTTCAACCAGATGT...................................	22	1	569.00	0.00	19.00	0.00	550.00
.............................................................................................AGCTGGTTGACATCGGGTCAGA............................................................................	22	1	562.00	76.00	32.00	1.00	453.00
......................................................................................................................................TTGGTCCCCTTCAACCATCTGT...................................	22	1	558.00	13.00	58.00	6.00	481.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTGTA..................................	23	1	498.00	2.00	79.00	0.00	417.00
......................................................................................................................................TTGGTCCCCTTAAACCAGCTGT...................................	22	1	390.00	2.00	5.00	0.00	383.00
......................................................................................................................................TTGGTCCCCTTCAACCCGCTGT...................................	22	1	371.00	24.00	256.00	7.00	84.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTGC...................................	22	1	332.00	4.00	99.00	10.00	219.00
......................................................................................................................................TTAGTCCCCTTCAACCAGCTGT...................................	22	1	293.00	2.00	101.00	3.00	187.00
......................................................................................................................................TTGTTCCCCTTCAACCAGCTGT...................................	22	1	275.00	6.00	11.00	4.00	254.00
......................................................................................................................................TTGGTCCCCTTCACCCAGCTGT...................................	22	1	273.00	3.00	207.00	3.00	60.00
......................................................................................................................................TTGGCCCCCTTCAACCAGCTGT...................................	22	1	269.00	1.00	57.00	4.00	207.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTTT...................................	22	1	211.00	14.00	27.00	3.00	167.00
......................................................................................................................................TTGGTCCCCTTCAAACAGCTGT...................................	22	1	196.00	2.00	18.00	1.00	175.00
......................................................................................................................................TTGGTCCCCCTCAACCAGCTGT...................................	22	1	168.00	2.00	26.00	3.00	137.00
......................................................................................................................................TTGGTCCCATTCAACCAGCTG....................................	21	1	163.00	1.00	2.00	0.00	160.00
......................................................................................................................................TTGGTCTCCTTCAACCAGCTGT...................................	22	1	159.00	5.00	69.00	1.00	84.00
......................................................................................................................................TTCGTCCCCTTCAACCAGCTGT...................................	22	1	157.00	1.00	8.00	2.00	146.00
......................................................................................................................................TTGGTCCCCTTCAACCACCTGT...................................	22	1	156.00	6.00	24.00	2.00	124.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCCGT...................................	22	1	151.00	3.00	33.00	2.00	113.00
......................................................................................................................................TTGGTCCCCTTCCACCAGCTGT...................................	22	1	150.00	7.00	102.00	9.00	32.00
......................................................................................................................................TTGGTCCCCTTCAACTAGCTGT...................................	22	1	148.00	1.00	39.00	1.00	107.00
.......................................................................................................................................TTGTCCCCTTCAACCAGCTGT...................................	21	1	146.00	0.00	1.00	0.00	145.00
.....................................................................................................................................CTTGGTCCCCTTCAACCAGCTGT...................................	23	1	144.00	3.00	31.00	3.00	107.00
......................................................................................................................................TTGGTCCTCTTCAACCAGCTGT...................................	22	1	138.00	3.00	61.00	1.00	73.00
......................................................................................................................................TTGATCCCCTTCAACCAGCTGT...................................	22	1	137.00	1.00	27.00	2.00	107.00
.......................................................................................................................................TGGTCCCCTTCAACCAGCTGT...................................	21	1	136.00	1.00	27.00	1.00	107.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTGTC..................................	23	1	135.00	0.00	23.00	3.00	109.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTGA...................................	22	1	128.00	1.00	26.00	0.00	101.00
......................................................................................................................................TTGGTCCCTTTCAACCAGCTGT...................................	22	1	127.00	0.00	52.00	1.00	74.00
......................................................................................................................................TTGGTCCACTTCAACCAGCTG....................................	21	1	127.00	0.00	2.00	0.00	125.00
......................................................................................................................................TTGGTCCCCTTCGACCAGCTGT...................................	22	1	122.00	2.00	45.00	2.00	73.00
......................................................................................................................................TTGGGCCCCTTCAACCAGCTGT...................................	22	1	122.00	14.00	80.00	3.00	25.00
......................................................................................................................................TTGGTCCCCTCCAACCAGCTGT...................................	22	1	121.00	1.00	22.00	2.00	96.00
......................................................................................................................................CTGGTCCCCTTCAACCAGCTGT...................................	22	1	121.00	3.00	17.00	1.00	100.00
......................................................................................................................................TTGCTCCCCTTCAACCAGCTGT...................................	22	1	121.00	6.00	27.00	3.00	85.00
......................................................................................................................................TCGGTCCCCTTCAACCAGCTGT...................................	22	1	115.00	2.00	30.00	2.00	81.00
......................................................................................................................................TTGGTCCCCTTCAACCGGCTGT...................................	22	1	105.00	0.00	19.00	0.00	86.00
......................................................................................................................................TTGGACCCCTTCAACCAGCTGT...................................	22	1	102.00	5.00	57.00	2.00	38.00
......................................................................................................................................TTTGTCCCCTTCAACCAGCTG....................................	21	1	99.00	1.00	0.00	0.00	98.00
......................................................................................................................................TTGGTCCCATTCAACCAGCT.....................................	20	1	97.00	0.00	1.00	0.00	96.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTCT...................................	22	1	91.00	9.00	26.00	5.00	51.00
......................................................................................................................................TTGGTCCCCTTCAGCCAGCTGT...................................	22	1	90.00	3.00	27.00	0.00	60.00
......................................................................................................................................TTGGTCCCCTTCAACCAACTGT...................................	22	1	84.00	2.00	22.00	0.00	60.00
......................................................................................................................................TGGGTCCCCTTCAACCAGCTGT...................................	22	1	83.00	2.00	70.00	2.00	9.00
.............................................................................................AGCTGGTTGACATCGGGTCAG.............................................................................	21	1	82.00	2.00	4.00	0.00	76.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTAT...................................	22	1	81.00	5.00	25.00	2.00	49.00
......................................................................................................................................TTGGTTCCCTTCAACCAGCTGT...................................	22	1	79.00	0.00	19.00	0.00	60.00
......................................................................................................................................TTGGTCCACTTCAACCAGCT.....................................	20	1	77.00	0.00	1.00	0.00	76.00
......................................................................................................................................TTGGTCCCCTTCAATCAGCTGT...................................	22	1	73.00	2.00	12.00	1.00	58.00
......................................................................................................................................TTGGTCACCTTCAACCAGCTG....................................	21	1	71.00	0.00	0.00	0.00	71.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTGTTT.................................	24	1	70.00	0.00	10.00	0.00	60.00
......................................................................................................................................TTGGTCCCCTTTAACCAGCTGT...................................	22	1	63.00	1.00	11.00	0.00	51.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTT....................................	21	1	63.00	3.00	9.00	1.00	50.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTGG...................................	22	1	63.00	5.00	14.00	2.00	42.00
......................................................................................................................................TTGGTCCCCTTCAACCTGCTGT...................................	22	1	62.00	1.00	18.00	0.00	43.00
......................................................................................................................................TTGGTCCCCTTCAACCAGTTGT...................................	22	1	59.00	0.00	17.00	0.00	42.00
........................................................................................................................................GGTCCCCTTCAACCAGCTGT...................................	20	1	52.00	1.00	3.00	0.00	48.00
......................................................................................................................................TTGGTACCCTTCAACCAGCTG....................................	21	1	51.00	0.00	1.00	0.00	50.00
......................................................................................................................................TTGGTCCCCTTCAACCATCTG....................................	21	1	50.00	1.00	2.00	0.00	47.00
......................................................................................................................................TTGGTCCCCTTCTACCAGCTGT...................................	22	1	50.00	2.00	37.00	0.00	11.00
......................................................................................................................................TTGGTCCCCTTCAACCATCT.....................................	20	1	49.00	0.00	1.00	0.00	48.00
......................................................................................................................................TTGGTCCCCTTCAACCAGATG....................................	21	1	46.00	0.00	0.00	0.00	46.00
......................................................................................................................................TTGGTCCCCTTCAAxCAGCTGT...................................	21	1	45.00	1.00	0.00	0.00	44.00
......................................................................................................................................TTGGTxCCCTTCAACCAGCTGT...................................	21	1	43.00	0.00	2.00	0.00	41.00
......................................................................................................................................TTTGTCCCCTTCAACCAGCT.....................................	20	1	42.00	0.00	0.00	0.00	42.00
......................................................................................................................................GTGGTCCCCTTCAACCAGCTGT...................................	22	1	40.00	2.00	4.00	1.00	33.00
......................................................................................................................................TTGTTCCCCTTCAACCAGCTG....................................	21	1	39.00	1.00	4.00	0.00	34.00
.............................................................................................AGTTGGTTGACATCGGGTCAGA............................................................................	22	1	38.00	1.00	0.00	36.00	1.00
......................................................................................................................................TTGGTCACCTTCAACCAGCT.....................................	20	1	36.00	0.00	0.00	0.00	36.00
.........................................................................................................................................GTCCCCTTCAACCAGCTGT...................................	19	1	34.00	0.00	5.00	0.00	29.00
......................................................................................................................................TTGGTACCATTCAACCAGCTGT...................................	22	1	33.00	0.00	0.00	0.00	33.00
......................................................................................................................................TTGGTCCACTTCAACAAGCTGT...................................	22	1	33.00	0.00	1.00	0.00	32.00
......................................................................................................................................TTGGTCCCATTCAACCAG.......................................	18	1	32.00	0.00	2.00	0.00	30.00
......................................................................................................................................TTGGTCACATTCAACCAGCTGT...................................	22	1	32.00	0.00	0.00	0.00	32.00
......................................................................................................................................TTGGTCCCATTCAACAAGCTGT...................................	22	1	31.00	2.00	1.00	0.00	28.00
......................................................................................................................................ATGGTCCCCTTCAACCAGCTGT...................................	22	1	31.00	1.00	8.00	1.00	21.00
......................................................................................................................................TTGGTCCCATTCAACCAGCTGTT..................................	23	1	30.00	0.00	0.00	0.00	30.00
......................................................................................................................................TTGGTCCCCTTCAACGAGCTGT...................................	22	1	30.00	0.00	3.00	0.00	27.00
.......................................................................................................................................TTGTCCCCTTCAACCAGCTG....................................	20	1	30.00	0.00	0.00	0.00	30.00
......................................................................................................................................TTGGTCCCATTCAACCAGATGT...................................	22	1	30.00	0.00	1.00	0.00	29.00
......................................................................................................................................TTGGTACCCTTCAACCAGCT.....................................	20	1	30.00	0.00	1.00	1.00	28.00
......................................................................................................................................TTGGTCCCCATCAACCAGCTGT...................................	22	1	30.00	0.00	7.00	0.00	23.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTGTGGTC...............................	26	1	29.00	0.00	0.00	0.00	29.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTGTAT.................................	24	1	29.00	0.00	7.00	0.00	22.00
......................................................................................................................................TTGGTCCCCTTAAACCAGCTG....................................	21	1	27.00	0.00	0.00	0.00	27.00
......................................................................................................................................TTGGTGCCCTTCAACCAGCTGT...................................	22	1	27.00	1.00	8.00	0.00	18.00
......................................................................................................................................TTGGTCCCCGTCAACCAGCTGT...................................	22	1	27.00	4.00	16.00	2.00	5.00
......................................................................................................................................TTGGTCCCCTTCAACAAGCTG....................................	21	1	26.00	0.00	0.00	0.00	26.00
......................................................................................................................................TTGGTCACCTTCAACAAGCTGT...................................	22	1	26.00	1.00	2.00	0.00	23.00

droAna3

T--------------------------------------------------TCGTG-A--ATGAT--------TATCTGCAAC-GCTGTATGTAGCTGGTTGACATCGGGTCAGATCTATCT--TTTCAAGCATTTGGTCCCCTTCAACCAGCTGTAG-CAGTGGTTGATGACAACAAAGTACAAGTGAAA	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
......................................................................................................................................TTGGTCCCCTTCAACCAGCTGT...................................	22	1	69497.00	10308.00	21623.00	37295.00	271.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCT.....................................	20	1	4900.00	260.00	2053.00	2586.00	1.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTG....................................	21	1	4218.00	203.00	1890.00	2103.00	22.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTGTT..................................	23	1	1638.00	84.00	717.00	836.00	1.00
.............................................................................................AGCTGGTTGACATCGGGTCAGAT...........................................................................	23	1	1397.00	24.00	1293.00	63.00	17.00
......................................................................................................................................TTGGGCCCCTTCAACCAGCTGT...................................	22	1	738.00	26.00	7.00	703.00	2.00
......................................................................................................................................TTGGTCCCCTTCAACCAG.......................................	18	1	483.00	85.00	236.00	162.00	0.00
......................................................................................................................................TTGGACCCCTTCAACCAGCTGT...................................	22	1	466.00	11.00	14.00	440.00	1.00
......................................................................................................................................TTGGTCCCCTTCAACCATCTGT...................................	22	1	449.00	91.00	293.00	63.00	2.00
......................................................................................................................................TTTGTCCCCTTCAACCAGCTGT...................................	22	1	447.00	14.00	391.00	40.00	2.00
......................................................................................................................................TTGGTCCCCTTCAACCAGATGT...................................	22	1	356.00	78.00	224.00	54.00	0.00
.............................................................................................AGCTGGTTGACATCGGGTCAGA............................................................................	22	1	350.00	3.00	322.00	8.00	17.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTGC...................................	22	1	345.00	11.00	26.00	307.00	1.00
......................................................................................................................................TTGGTCCCATTCAACCAGCTGT...................................	22	1	336.00	33.00	166.00	136.00	1.00
......................................................................................................................................TTGGCCCCCTTCAACCAGCTGT...................................	22	1	318.00	15.00	31.00	271.00	1.00
......................................................................................................................................TTGGTCCACTTCAACCAGCTGT...................................	22	1	313.00	34.00	142.00	137.00	0.00
......................................................................................................................................TGGGTCCCCTTCAACCAGCTGT...................................	22	1	301.00	29.00	2.00	269.00	1.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTAT...................................	22	1	288.00	121.00	135.00	32.00	0.00
......................................................................................................................................TTGGTCACCTTCAACCAGCTGT...................................	22	1	264.00	28.00	79.00	157.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTCT...................................	22	1	211.00	72.00	66.00	72.00	1.00
......................................................................................................................................TTGGTACCCTTCAACCAGCTGT...................................	22	1	203.00	16.00	49.00	137.00	1.00
......................................................................................................................................TTGGTCCCCTTCAACCCGCTGT...................................	22	1	179.00	3.00	4.00	168.00	4.00
......................................................................................................................................TTGGTCCCCTTCAACAAGCTGT...................................	22	1	175.00	26.00	35.00	114.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTGA...................................	22	1	168.00	9.00	83.00	76.00	0.00
......................................................................................................................................TTGGTCCCCTTCACCCAGCTGT...................................	22	1	145.00	13.00	7.00	122.00	3.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTGTA..................................	23	1	132.00	6.00	50.00	75.00	1.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTTT...................................	22	1	130.00	36.00	54.00	37.00	3.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTGTTT-................................	24	1	120.00	3.00	52.00	65.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACCACCTGT...................................	22	1	116.00	12.00	15.00	89.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACTAGCTGT...................................	22	1	115.00	29.00	41.00	45.00	0.00
......................................................................................................................................TTGGTCCCCTTAAACCAGCTGT...................................	22	1	114.00	47.00	40.00	27.00	0.00
.............................................................................................AGCTGGTTGACATCGGGTCAG.............................................................................	21	1	109.00	2.00	102.00	5.00	0.00
......................................................................................................................................GTGGTCCCCTTCAACCAGCTGT...................................	22	1	109.00	5.00	4.00	100.00	0.00
......................................................................................................................................TTGCTCCCCTTCAACCAGCTGT...................................	22	1	104.00	13.00	10.00	81.00	0.00
......................................................................................................................................TTGGTCCCCTTCCACCAGCTGT...................................	22	1	103.00	19.00	2.00	79.00	3.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTT....................................	21	1	97.00	5.00	43.00	49.00	0.00
......................................................................................................................................TTGGTCCCCTGCAACCAGCTGT...................................	22	1	96.00	17.00	0.00	79.00	0.00
......................................................................................................................................TTGGTCCTCTTCAACCAGCTGT...................................	22	1	96.00	8.00	28.00	60.00	0.00
......................................................................................................................................TCGGTCCCCTTCAACCAGCTGT...................................	22	1	95.00	12.00	14.00	69.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTGG...................................	22	1	92.00	1.00	11.00	79.00	1.00
......................................................................................................................................TTGGTCCCCTCCAACCAGCTGT...................................	22	1	91.00	17.00	12.00	62.00	0.00
......................................................................................................................................TTGGTCCCCCTCAACCAGCTGT...................................	22	1	91.00	7.00	21.00	63.00	0.00
......................................................................................................................................CTGGTCCCCTTCAACCAGCTGT...................................	22	1	89.00	13.00	21.00	54.00	1.00
......................................................................................................................................TTAGTCCCCTTCAACCAGCTGT...................................	22	1	86.00	6.00	13.00	67.00	0.00
......................................................................................................................................TTGGTCCCCTTCGACCAGCTGT...................................	22	1	85.00	34.00	11.00	39.00	1.00
......................................................................................................................................TTGGTCCCCTTCAGCCAGCTGT...................................	22	1	83.00	16.00	14.00	53.00	0.00
......................................................................................................................................TTGGTCCCCTTCTACCAGCTGT...................................	22	1	82.00	20.00	7.00	55.00	0.00
......................................................................................................................................TTGATCCCCTTCAACCAGCTGT...................................	22	1	77.00	12.00	13.00	52.00	0.00
......................................................................................................................................ATGGTCCCCTTCAACCAGCTGT...................................	22	1	76.00	5.00	3.00	68.00	0.00
......................................................................................................................................TTGGTCTCCTTCAACCAGCTGT...................................	22	1	75.00	8.00	25.00	42.00	0.00
......................................................................................................................................TTGGTCCCCGTCAACCAGCTGT...................................	22	1	74.00	1.00	2.00	71.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCCGT...................................	22	1	74.00	3.00	16.00	53.00	2.00
......................................................................................................................................TTGGTCCCTTTCAACCAGCTGT...................................	22	1	73.00	7.00	9.00	56.00	1.00
......................................................................................................................................TTGGTCCCCTTCAACCGGCTGT...................................	22	1	72.00	4.00	22.00	46.00	0.00
......................................................................................................................................TTGTTCCCCTTCAACCAGCTGT...................................	22	1	72.00	18.00	24.00	29.00	1.00
......................................................................................................................................TAGGTCCCCTTCAACCAGCTGT...................................	22	1	70.00	18.00	2.00	50.00	0.00
......................................................................................................................................TTGGTCCCCTTCAATCAGCTGT...................................	22	1	62.00	9.00	27.00	25.00	1.00
......................................................................................................................................TGGGACCCCTTCAACCAGCTGT...................................	22	1	61.00	0.00	0.00	61.00	0.00
......................................................................................................................................TTGGGCCCCTTCAACCAGCT.....................................	20	1	60.00	0.00	0.00	60.00	0.00
......................................................................................................................................TTGGTCCCCTTTAACCAGCTGT...................................	22	1	58.00	28.00	9.00	21.00	0.00
......................................................................................................................................TTGGTGCCCTTCAACCAGCTGT...................................	22	1	55.00	1.00	3.00	51.00	0.00
......................................................................................................................................TTCGTCCCCTTCAACCAGCTGT...................................	22	1	54.00	8.00	21.00	24.00	1.00
......................................................................................................................................TTGGTCCCCTTCAACCTGCTGT...................................	22	1	52.00	4.00	12.00	36.00	0.00
......................................................................................................................................TTGGTTCCCTTCAACCAGCTGT...................................	22	1	51.00	7.00	17.00	27.00	0.00
......................................................................................................................................TTGGTCCCCTTCATCCAGCTGT...................................	22	1	49.00	9.00	1.00	39.00	0.00
......................................................................................................................................TTTGTCCCCTTCAACCAGCT.....................................	20	1	48.00	1.00	45.00	2.00	0.00
......................................................................................................................................TTGGTCCCCTTGAACCAGCTGT...................................	22	1	44.00	38.00	0.00	6.00	0.00
......................................................................................................................................TTGGTCCCCTACAACCAGCTGT...................................	22	1	44.00	26.00	2.00	16.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACCATCT.....................................	20	1	43.00	2.00	34.00	7.00	0.00
......................................................................................................................................TTGGTCCCCTTCAAACAGCTGT...................................	22	1	42.00	2.00	10.00	29.00	1.00
......................................................................................................................................TTGGGCCCCTTCAACCAGCTG....................................	21	1	42.00	0.00	0.00	42.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCGGT...................................	22	1	42.00	0.00	0.00	42.00	0.00
.....................................................................................................................................CTTGGTCCCCTTCAACCAGCTGT...................................	23	1	40.00	2.00	11.00	27.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTA....................................	21	1	37.00	3.00	26.00	8.00	0.00
.............................................................................................AGCTGGTTGACATCGGGTCA..............................................................................	20	1	36.00	1.00	33.00	2.00	0.00
......................................................................................................................................TTTGTCCCCTTCAACCAGCTG....................................	21	1	36.00	0.00	36.00	0.00	0.00
.......................................................................................................................................TTGTCCCCTTCAACCAGCTGT...................................	21	1	36.00	14.00	16.00	6.00	0.00
......................................................................................................................................TGGGGCCCCTTCAACCAGCTGT...................................	22	1	35.00	0.00	0.00	35.00	0.00
......................................................................................................................................TTGGACCCCTTCAACCAGCT.....................................	20	1	35.00	0.00	0.00	35.00	0.00
......................................................................................................................................TTGGACCCCTTCAACCAGCTG....................................	21	1	35.00	0.00	1.00	34.00	0.00
......................................................................................................................................TTGGCCCCCTTCAACCAGCTGC...................................	22	1	35.00	0.00	0.00	35.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTGTTG-................................	24	1	34.00	1.00	29.00	4.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACGAGCTGT...................................	22	1	34.00	18.00	8.00	8.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTGTC..................................	23	1	33.00	3.00	7.00	23.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACCAGTTGT...................................	22	1	32.00	4.00	13.00	15.00	0.00
......................................................................................................................................TTGGTCCGCTTCAACCAGCTGT...................................	22	1	31.00	2.00	4.00	25.00	0.00
......................................................................................................................................TTGGGCCCCGTCAACCAGCTGT...................................	22	1	31.00	0.00	0.00	31.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACCAACTGT...................................	22	1	31.00	7.00	11.00	13.00	0.00
.......................................................................................................................................TGGTCCCCTTCAACCAGCTGT...................................	21	1	31.00	2.00	7.00	20.00	2.00
......................................................................................................................................TTGGGCCCCTGCAACCAGCTGT...................................	22	1	30.00	0.00	0.00	30.00	0.00
......................................................................................................................................TTGCACCCCTTCAACCAGCTGT...................................	22	1	30.00	0.00	0.00	30.00	0.00
......................................................................................................................................TTGGTCGCCTTCAACCAGCTGT...................................	22	1	30.00	5.00	1.00	24.00	0.00
......................................................................................................................................TTGGGCACCTTCAACCAGCTGT...................................	22	1	30.00	0.00	0.00	30.00	0.00
......................................................................................................................................TAGGACCCCTTCAACCAGCTGT...................................	22	1	30.00	0.00	0.00	30.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACCATCTG....................................	21	1	29.00	3.00	21.00	4.00	1.00
......................................................................................................................................TTGGTCCCGTTCAACCAGCTGT...................................	22	1	29.00	5.00	5.00	19.00	0.00
......................................................................................................................................TTGGACCCCTTCAACAAGCTGT...................................	22	1	28.00	0.00	0.00	28.00	0.00
......................................................................................................................................TGGGCCCCCTTCAACCAGCTGT...................................	22	1	27.00	0.00	0.00	27.00	0.00
......................................................................................................................................TTGGCCCCCTTCAACCAGCTG....................................	21	1	26.00	1.00	2.00	23.00	0.00
........................................................................................................................................GGTCCCCTTCAACCAGCTGT...................................	20	1	26.00	3.00	10.00	13.00	0.00
.............................................................................................ATCTGGTTGACATCGGGTCAGAT...........................................................................	23	1	25.00	0.00	25.00	0.00	0.00

dp4

TGA-----------------------------------------------CGCG---TGTGTGCT--------TATGTACAACGGCTGTATGTAGCTGGTTGACATCGGGTCAGATCTATTT--TATCAAGTATTTGGTCCCCTTCAACCAGCTGTAT-CAGTGGTTGATTCCAACAAAAAACAAAAG--G	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
......................................................................................................................................TTGGTCCCCTTCAACCAGCTGT...................................	22	1	50463.00	6085.00	3811.00	40548.00	19.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTG....................................	21	1	2674.00	100.00	218.00	2289.00	67.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTGTT..................................	23	1	839.00	82.00	23.00	734.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCT.....................................	20	1	661.00	52.00	13.00	596.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTGC...................................	22	1	229.00	5.00	14.00	210.00	0.00
......................................................................................................................................TTGGACCCCTTCAACCAGCTGT...................................	22	1	220.00	2.00	16.00	202.00	0.00
.............................................................................................AGCTGGTTGACATCGGGTCAGAT...........................................................................	23	1	215.00	25.00	150.00	40.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACCAG.......................................	18	1	200.00	50.00	9.00	141.00	0.00
......................................................................................................................................TTAGTCCCCTTCAACCAGCTGT...................................	22	1	190.00	2.00	3.00	185.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACCCGCTGT...................................	22	1	188.00	4.00	32.00	152.00	0.00
.............................................................................................AGCTGGTTGACATCGGGTCAGA............................................................................	22	1	175.00	13.00	148.00	13.00	1.00
......................................................................................................................................TTGGGCCCCTTCAACCAGCTGT...................................	22	1	167.00	2.00	25.00	139.00	1.00
......................................................................................................................................TGGGTCCCCTTCAACCAGCTGT...................................	22	1	165.00	0.00	9.00	156.00	0.00
......................................................................................................................................TTGGCCCCCTTCAACCAGCTGT...................................	22	1	146.00	11.00	19.00	116.00	0.00
......................................................................................................................................TTGGTCCCCTTCCACCAGCTGT...................................	22	1	94.00	3.00	31.00	60.00	0.00
......................................................................................................................................TTGGTCCCCTTCACCCAGCTGT...................................	22	1	87.00	2.00	3.00	82.00	0.00
......................................................................................................................................TTCGTCCCCTTCAACCAGCTGT...................................	22	1	86.00	2.00	2.00	82.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACAAGCTGT...................................	22	1	86.00	2.00	7.00	77.00	0.00
......................................................................................................................................TTGGTCACCTTCAACCAGCTGT...................................	22	1	79.00	0.00	12.00	67.00	0.00
......................................................................................................................................TTGGTCTCCTTCAACCAGCTGT...................................	22	1	79.00	2.00	4.00	73.00	0.00
.......................................................................................................................................TGGTCCCCTTCAACCAGCTGT...................................	21	1	77.00	8.00	12.00	57.00	0.00
......................................................................................................................................TTGGTCCCCCTCAACCAGCTGT...................................	22	1	71.00	7.00	6.00	58.00	0.00
......................................................................................................................................TTGGTCCACTTCAACCAGCTGT...................................	22	1	66.00	1.00	16.00	49.00	0.00
......................................................................................................................................TTGGTCCCATTCAACCAGCTGT...................................	22	1	66.00	2.00	12.00	52.00	0.00
......................................................................................................................................TTGGTCCTCTTCAACCAGCTGT...................................	22	1	63.00	2.00	4.00	57.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTGA...................................	22	1	60.00	8.00	2.00	50.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTGTTT-................................	24	1	60.00	0.00	1.00	59.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTGG...................................	22	1	58.00	0.00	10.00	46.00	2.00
......................................................................................................................................TTGGTCCCCTTCAACCGGCTGT...................................	22	1	57.00	6.00	4.00	47.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCCGT...................................	22	1	54.00	6.00	4.00	44.00	0.00
......................................................................................................................................TTGGTCCCCTTCGACCAGCTGT...................................	22	1	54.00	5.00	7.00	42.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACTAGCTGT...................................	22	1	53.00	3.00	5.00	45.00	0.00
......................................................................................................................................TTGATCCCCTTCAACCAGCTGT...................................	22	1	52.00	5.00	4.00	43.00	0.00
......................................................................................................................................TTGGTACCCTTCAACCAGCTGT...................................	22	1	48.00	5.00	5.00	38.00	0.00
......................................................................................................................................TTGGTCCCCTCCAACCAGCTGT...................................	22	1	47.00	3.00	4.00	40.00	0.00
.....................................................................................................................................CTTGGTCCCCTTCAACCAGCTGT...................................	23	1	47.00	6.00	3.00	38.00	0.00
......................................................................................................................................CTGGTCCCCTTCAACCAGCTGT...................................	22	1	47.00	7.00	5.00	35.00	0.00
......................................................................................................................................TTGGTCCCCTTCAGCCAGCTGT...................................	22	1	46.00	6.00	6.00	34.00	0.00
......................................................................................................................................TCGGTCCCCTTCAACCAGCTGT...................................	22	1	45.00	6.00	4.00	35.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTAT...................................	22	1	44.00	3.00	3.00	38.00	0.00
......................................................................................................................................TTGCTCCCCTTCAACCAGCTGT...................................	22	1	44.00	1.00	1.00	42.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACCAGATGT...................................	22	1	43.00	4.00	0.00	39.00	0.00
......................................................................................................................................TTTGTCCCCTTCAACCAGCTGT...................................	22	1	41.00	2.00	2.00	37.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTGTA..................................	23	1	41.00	3.00	4.00	34.00	0.00
......................................................................................................................................TTGGTCCCTTTCAACCAGCTGT...................................	22	1	38.00	2.00	4.00	32.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACCATCTGT...................................	22	1	38.00	3.00	4.00	31.00	0.00
......................................................................................................................................TGGGACCCCTTCAACCAGCTGT...................................	22	1	38.00	0.00	2.00	36.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTCT...................................	22	1	37.00	2.00	4.00	31.00	0.00
......................................................................................................................................TTGGTCCCCGTCAACCAGCTGT...................................	22	1	35.00	0.00	5.00	30.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACCACCTGT...................................	22	1	33.00	3.00	1.00	29.00	0.00
......................................................................................................................................TTGGTCCCCTTCTACCAGCTGT...................................	22	1	30.00	0.00	8.00	22.00	0.00
......................................................................................................................................ATGGTCCCCTTCAACCAGCTGT...................................	22	1	30.00	0.00	3.00	27.00	0.00
......................................................................................................................................GTGGTCCCCTTCAACCAGCTGT...................................	22	1	29.00	2.00	0.00	27.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTGTC..................................	23	1	29.00	7.00	2.00	20.00	0.00
......................................................................................................................................TTGGTCCCCTTCAAACAGCTGT...................................	22	1	28.00	2.00	6.00	20.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTT....................................	21	1	26.00	3.00	2.00	21.00	0.00
......................................................................................................................................TTGGTTCCCTTCAACCAGCTGT...................................	22	1	24.00	0.00	6.00	18.00	0.00
......................................................................................................................................TTGTTCCCCTTCAACCAGCTGT...................................	22	1	24.00	0.00	2.00	22.00	0.00
......................................................................................................................................TTGGTCCCCTTCATCCAGCTGT...................................	22	1	23.00	0.00	2.00	21.00	0.00
......................................................................................................................................TTGGTCCCCTTCAATCAGCTGT...................................	22	1	23.00	3.00	2.00	18.00	0.00
......................................................................................................................................TTGGACACCTTCAACCAGCTGT...................................	22	1	22.00	0.00	9.00	13.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACCTGCTGT...................................	22	1	22.00	1.00	4.00	17.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTTT...................................	22	1	20.00	0.00	1.00	19.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACCAACTGT...................................	22	1	20.00	1.00	3.00	16.00	0.00
......................................................................................................................................TTGGTCCCCTTTAACCAGCTGT...................................	22	1	20.00	2.00	2.00	16.00	0.00
......................................................................................................................................TTGGACCCCTTCAACAAGCTGT...................................	22	1	20.00	0.00	2.00	18.00	0.00
......................................................................................................................................TTGGGCACCTTCAACCAGCTGT...................................	22	1	19.00	0.00	3.00	16.00	0.00
......................................................................................................................................TGGGTCCCCTTCAACCAGCTGG...................................	22	1	19.00	0.00	1.00	18.00	0.00
......................................................................................................................................TTGGTCCCCTTAAACCAGCTGT...................................	22	1	18.00	3.00	2.00	13.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACCAGTTGT...................................	22	1	17.00	1.00	1.00	15.00	0.00
......................................................................................................................................TAGGTCCCCTTCAACCAGCTGT...................................	22	1	17.00	1.00	2.00	14.00	0.00
......................................................................................................................................TTGGGCCCCTGCAACCAGCTGT...................................	22	1	17.00	0.00	0.00	17.00	0.00
......................................................................................................................................TTGGTCCCCTGCAACCAGCTGT...................................	22	1	17.00	0.00	2.00	15.00	0.00
.............................................................................................AGCTGGTTGACATCGGGTCAG.............................................................................	21	1	16.00	1.00	12.00	3.00	0.00
......................................................................................................................................TTGGTCCGCTTCAACCAGCTGT...................................	22	1	16.00	0.00	4.00	12.00	0.00
......................................................................................................................................TTGGTCCCCTTCACCCCGCTGT...................................	22	1	15.00	0.00	0.00	15.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCGGT...................................	22	1	14.00	0.00	1.00	13.00	0.00
......................................................................................................................................TGGGTCCCATTCAACCAGCTGT...................................	22	1	13.00	0.00	0.00	13.00	0.00
......................................................................................................................................TTGGTCCCCTTCCACCCGCTGT...................................	22	1	13.00	0.00	6.00	7.00	0.00
......................................................................................................................................TTGGACCCCTTCAACCAGCTGG...................................	22	1	13.00	0.00	4.00	9.00	0.00
......................................................................................................................................TTGGTGCCCTTCAACCAGCTGT...................................	22	1	13.00	0.00	2.00	11.00	0.00
.......................................................................................................................................TTGTCCCCTTCAACCAGCTGT...................................	21	1	12.00	3.00	0.00	9.00	0.00
......................................................................................................................................TGGGTCCACTTCAACCAGCTGT...................................	22	1	12.00	0.00	2.00	10.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTGCT..................................	23	1	12.00	0.00	0.00	12.00	0.00
......................................................................................................................................TTGGTCCCCTACAACCAGCTGT...................................	22	1	12.00	1.00	0.00	11.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACCCGCTGC...................................	22	1	12.00	0.00	0.00	12.00	0.00
......................................................................................................................................TTGGTCCCCTTCACCCAGCTG....................................	21	1	11.00	0.00	1.00	10.00	0.00
......................................................................................................................................TTGGCCCCCTTCAACCAGCTG....................................	21	1	11.00	0.00	0.00	11.00	0.00
......................................................................................................................................TTAGTCCCCTTCAACCAGCTG....................................	21	1	11.00	0.00	0.00	11.00	0.00
......................................................................................................................................TTGGACCCCTTCAACCAGCTG....................................	21	1	10.00	0.00	0.00	10.00	0.00
........................................................................................................................................GGTCCCCTTCAACCAGCTGT...................................	20	1	10.00	1.00	1.00	8.00	0.00
......................................................................................................................................TTGGTCGCCTTCAACCAGCTGT...................................	22	1	10.00	0.00	2.00	8.00	0.00
......................................................................................................................................TGGGGCCCCTTCAACCAGCTGT...................................	22	1	10.00	0.00	1.00	9.00	0.00
......................................................................................................................................TGGGTCCCCTTCATCCAGCTGT...................................	22	1	10.00	0.00	1.00	9.00	0.00
......................................................................................................................................TTGGACCACTTCAACCAGCTGT...................................	22	1	10.00	0.00	2.00	8.00	0.00
......................................................................................................................................TAGGACCCCTTCAACCAGCTGT...................................	22	1	10.00	0.00	0.00	10.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCAGT...................................	22	1	9.00	0.00	0.00	9.00	0.00
......................................................................................................................................TTGCACCCCTTCAACCAGCTGT...................................	22	1	9.00	0.00	0.00	9.00	0.00
......................................................................................................................................TGGGTCCCCGTCAACCAGCTGT...................................	22	1	9.00	0.00	0.00	9.00	0.00
......................................................................................................................................TTGGCCCCCTTCAACCAGCTGC...................................	22	1	9.00	0.00	0.00	9.00	0.00
......................................................................................................................................TTGGGCCCCTTCAACCAGCTG....................................	21	1	9.00	0.00	0.00	9.00	0.00

droPer1

tgA-----------------------------------------------CGCG---TGTGTGCT--------TATGTACAACGGCTGTATGTAGCTGGTTGACATCGGGTCAGATCTATTT--TATCAAGTATTTGGTCCCCTTCAACCAGCTGTAT-CAGTGGTTGATTCCAACAAAAAACAAAAG--G	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
......................................................................................................................................TTGGTCCCCTTCAACCAGCTGT...................................	22	1	117400.00	1983.00	1040.00	33932.00	80067.00	378.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTG....................................	21	1	3774.00	28.00	78.00	1695.00	1877.00	96.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTGTT..................................	23	1	2552.00	27.00	6.00	695.00	1824.00	0.00
......................................................................................................................................TTGGGCCCCTTCAACCAGCTGT...................................	22	1	1653.00	2.00	4.00	91.00	1555.00	1.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCT.....................................	20	1	1122.00	11.00	8.00	435.00	667.00	1.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTGC...................................	22	1	942.00	0.00	5.00	197.00	715.00	25.00
......................................................................................................................................TTGGACCCCTTCAACCAGCTGT...................................	22	1	938.00	0.00	2.00	80.00	856.00	0.00
......................................................................................................................................TGGGTCCCCTTCAACCAGCTGT...................................	22	1	708.00	0.00	4.00	47.00	657.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACCCGCTGT...................................	22	1	484.00	0.00	14.00	123.00	347.00	0.00
......................................................................................................................................TTGGCCCCCTTCAACCAGCTGT...................................	22	1	456.00	1.00	0.00	70.00	383.00	2.00
......................................................................................................................................TTGGTCCCCTTCAACCAG.......................................	18	1	372.00	20.00	4.00	158.00	190.00	0.00
.............................................................................................AGCTGGTTGACATCGGGTCAGAT...........................................................................	23	1	342.00	18.00	10.00	48.00	255.00	11.00
......................................................................................................................................TTGGTACCCTTCAACCAGCTGT...................................	22	1	318.00	0.00	3.00	165.00	150.00	0.00
......................................................................................................................................TTGGTCACCTTCAACCAGCTGT...................................	22	1	310.00	0.00	1.00	43.00	266.00	0.00
......................................................................................................................................TTGGTCCCCTTCACCCAGCTGT...................................	22	1	305.00	0.00	1.00	55.00	249.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACAAGCTGT...................................	22	1	302.00	1.00	1.00	60.00	240.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTGA...................................	22	1	250.00	1.00	1.00	69.00	179.00	0.00
......................................................................................................................................TTGGTCCCATTCAACCAGCTGT...................................	22	1	236.00	3.00	1.00	30.00	202.00	0.00
......................................................................................................................................TTGGTCCACTTCAACCAGCTGT...................................	22	1	232.00	3.00	2.00	29.00	198.00	0.00
......................................................................................................................................TTGGTCCCCGTCAACCAGCTGT...................................	22	1	223.00	0.00	1.00	11.00	211.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTGG...................................	22	1	195.00	0.00	2.00	23.00	103.00	67.00
......................................................................................................................................TTGGTCCCCTTCCACCAGCTGT...................................	22	1	192.00	1.00	3.00	39.00	149.00	0.00
......................................................................................................................................CTGGTCCCCTTCAACCAGCTGT...................................	22	1	186.00	1.00	0.00	37.00	148.00	0.00
......................................................................................................................................TTGGTCTCCTTCAACCAGCTGT...................................	22	1	181.00	0.00	2.00	74.00	104.00	1.00
......................................................................................................................................TTGGTCCCCTTCAACCACCTGT...................................	22	1	177.00	1.00	0.00	27.00	149.00	0.00
......................................................................................................................................TTGGTGCCCTTCAACCAGCTGT...................................	22	1	175.00	1.00	0.00	77.00	97.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCCGT...................................	22	1	169.00	0.00	1.00	43.00	125.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTGTTT-................................	24	1	164.00	3.00	0.00	34.00	127.00	0.00
......................................................................................................................................TTGGTCCCCCTCAACCAGCTGT...................................	22	1	161.00	0.00	1.00	32.00	128.00	0.00
......................................................................................................................................TGGGACCCCTTCAACCAGCTGT...................................	22	1	161.00	0.00	0.00	11.00	150.00	0.00
......................................................................................................................................TTGCTCCCCTTCAACCAGCTGT...................................	22	1	160.00	2.00	0.00	15.00	142.00	1.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTGTA..................................	23	1	159.00	0.00	0.00	51.00	108.00	0.00
......................................................................................................................................TTGGTCCCCTTCTACCAGCTGT...................................	22	1	158.00	0.00	0.00	25.00	133.00	0.00
......................................................................................................................................TTAGTCCCCTTCAACCAGCTGT...................................	22	1	155.00	2.00	4.00	53.00	96.00	0.00
......................................................................................................................................TTGGTCCCCTTCGACCAGCTGT...................................	22	1	154.00	0.00	0.00	31.00	123.00	0.00
......................................................................................................................................TCGGTCCCCTTCAACCAGCTGT...................................	22	1	152.00	0.00	1.00	25.00	126.00	0.00
......................................................................................................................................TTGGTCCCTTTCAACCAGCTGT...................................	22	1	151.00	0.00	0.00	34.00	117.00	0.00
......................................................................................................................................TTGGTCCCCTGCAACCAGCTGT...................................	22	1	145.00	0.00	0.00	9.00	136.00	0.00
......................................................................................................................................TTGGGCCCCTGCAACCAGCTGT...................................	22	1	144.00	0.00	0.00	8.00	136.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTCT...................................	22	1	142.00	0.00	1.00	27.00	114.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACCATCTGT...................................	22	1	142.00	4.00	1.00	38.00	99.00	0.00
......................................................................................................................................TTGGTCCCCTTCAGCCAGCTGT...................................	22	1	138.00	0.00	5.00	29.00	104.00	0.00
......................................................................................................................................TTGGTCCCCTCCAACCAGCTGT...................................	22	1	137.00	1.00	0.00	39.00	97.00	0.00
......................................................................................................................................TTGGTCCTCTTCAACCAGCTGT...................................	22	1	135.00	0.00	1.00	43.00	91.00	0.00
......................................................................................................................................ATGGTCCCCTTCAACCAGCTGT...................................	22	1	132.00	0.00	0.00	18.00	114.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACCGGCTGT...................................	22	1	130.00	1.00	1.00	25.00	101.00	2.00
......................................................................................................................................TTGGTCCCCTTCAACTAGCTGT...................................	22	1	118.00	0.00	2.00	36.00	80.00	0.00
......................................................................................................................................TAGGTCCCCTTCAACCAGCTGT...................................	22	1	112.00	1.00	1.00	8.00	102.00	0.00
......................................................................................................................................GTGGTCCCCTTCAACCAGCTGT...................................	22	1	107.00	1.00	0.00	14.00	91.00	1.00
.............................................................................................AGCTGGTTGACATCGGGTCAGA............................................................................	22	1	106.00	4.00	16.00	18.00	42.00	26.00
......................................................................................................................................TTGGTCCCCTTCAACCAGATGT...................................	22	1	106.00	3.00	0.00	48.00	55.00	0.00
......................................................................................................................................TTGGTCCCCTTCAAACAGCTGT...................................	22	1	105.00	0.00	4.00	19.00	81.00	1.00
.......................................................................................................................................TGGTCCCCTTCAACCAGCTGT...................................	21	1	104.00	3.00	1.00	34.00	66.00	0.00
......................................................................................................................................TTTGTCCCCTTCAACCAGCTGT...................................	22	1	99.00	2.00	1.00	9.00	83.00	4.00
......................................................................................................................................TTGCACCCCTTCAACCAGCTGT...................................	22	1	99.00	0.00	0.00	12.00	87.00	0.00
.....................................................................................................................................CTTGGTCCCCTTCAACCAGCTGT...................................	23	1	99.00	1.00	0.00	36.00	62.00	0.00
......................................................................................................................................TTGATCCCCTTCAACCAGCTGT...................................	22	1	94.00	1.00	0.00	29.00	64.00	0.00
......................................................................................................................................TGGGGCCCCTTCAACCAGCTGT...................................	22	1	88.00	0.00	0.00	3.00	85.00	0.00
......................................................................................................................................TTGGTTCCCTTCAACCAGCTGT...................................	22	1	88.00	4.00	0.00	28.00	56.00	0.00
......................................................................................................................................TTGGTCCGCTTCAACCAGCTGT...................................	22	1	86.00	0.00	0.00	2.00	84.00	0.00
......................................................................................................................................TTGTTCCCCTTCAACCAGCTGT...................................	22	1	85.00	1.00	1.00	13.00	68.00	2.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTAT...................................	22	1	84.00	1.00	0.00	30.00	53.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCGGT...................................	22	1	82.00	0.00	1.00	5.00	76.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTTT...................................	22	1	82.00	0.00	1.00	17.00	64.00	0.00
......................................................................................................................................TTGGACCCCTTCAACAAGCTGT...................................	22	1	79.00	0.00	1.00	9.00	69.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTGTC..................................	23	1	78.00	0.00	0.00	10.00	68.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACCTGCTGT...................................	22	1	76.00	0.00	1.00	13.00	62.00	0.00
......................................................................................................................................TTGGTCCCCTTCAATCAGCTGT...................................	22	1	75.00	1.00	1.00	28.00	45.00	0.00
......................................................................................................................................TTGGACACCTTCAACCAGCTGT...................................	22	1	72.00	0.00	0.00	7.00	65.00	0.00
......................................................................................................................................TTGGTCGCCTTCAACCAGCTGT...................................	22	1	70.00	0.00	0.00	3.00	67.00	0.00
......................................................................................................................................TGGGCCCCCTTCAACCAGCTGT...................................	22	1	67.00	0.00	0.00	7.00	60.00	0.00
......................................................................................................................................TTGGTCCCCTTCATCCAGCTGT...................................	22	1	67.00	0.00	0.00	7.00	60.00	0.00
......................................................................................................................................TTGGCCCCCTTCAACCAGCTGC...................................	22	1	67.00	0.00	0.00	6.00	61.00	0.00
......................................................................................................................................TTGGGCACCTTCAACCAGCTGT...................................	22	1	65.00	0.00	0.00	4.00	61.00	0.00
........................................................................................................................................GGTCCCCTTCAACCAGCTGT...................................	20	1	64.00	0.00	0.00	19.00	43.00	2.00
......................................................................................................................................TAGGACCCCTTCAACCAGCTGT...................................	22	1	62.00	0.00	0.00	2.00	60.00	0.00
......................................................................................................................................ATGGGCCCCTTCAACCAGCTGT...................................	22	1	61.00	0.00	0.00	1.00	60.00	0.00
......................................................................................................................................TTGGGCCCCTTCAACCAGCTGC...................................	22	1	60.00	0.00	0.00	2.00	58.00	0.00
......................................................................................................................................TTGGACCCCTTCAACCAGCTGC...................................	22	1	59.00	0.00	0.00	4.00	55.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACCAACTGT...................................	22	1	58.00	0.00	0.00	29.00	29.00	0.00
......................................................................................................................................TGGGTCCCATTCAACCAGCTGT...................................	22	1	56.00	0.00	0.00	7.00	49.00	0.00
......................................................................................................................................TTGGGCCCCTTCCACCAGCTGT...................................	22	1	56.00	0.00	0.00	5.00	51.00	0.00
......................................................................................................................................TTGGACTCCTTCAACCAGCTGT...................................	22	1	56.00	0.00	0.00	6.00	50.00	0.00
......................................................................................................................................TTGGGCCCCGTCAACCAGCTGT...................................	22	1	54.00	0.00	0.00	1.00	53.00	0.00
......................................................................................................................................TGGGTCCCCTGCAACCAGCTGT...................................	22	1	53.00	0.00	0.00	5.00	48.00	0.00
......................................................................................................................................TTGGTCCCCTTAAACCAGCTGT...................................	22	1	52.00	0.00	0.00	13.00	39.00	0.00
......................................................................................................................................TGGGTCCCCTTCTACCAGCTGT...................................	22	1	49.00	0.00	0.00	2.00	47.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACCCGCTGC...................................	22	1	49.00	0.00	0.00	12.00	37.00	0.00
......................................................................................................................................TTCGTCCCCTTCAACCAGCTGT...................................	22	1	48.00	1.00	0.00	10.00	34.00	3.00
......................................................................................................................................TTGGTCCCCTTCAACCAGTTGT...................................	22	1	47.00	1.00	0.00	14.00	31.00	1.00
......................................................................................................................................TGGGTCCACTTCAACCAGCTGT...................................	22	1	47.00	0.00	1.00	6.00	40.00	0.00
......................................................................................................................................TTGGTCCCCTTCACCCCGCTGT...................................	22	1	44.00	0.00	0.00	7.00	37.00	0.00
......................................................................................................................................TTGGGCGCCTTCAACCAGCTGT...................................	22	1	43.00	0.00	0.00	2.00	41.00	0.00
......................................................................................................................................TGGGTCCCCTTCAACCAGCTGC...................................	22	1	43.00	0.00	0.00	7.00	36.00	0.00
......................................................................................................................................GTGGGCCCCTTCAACCAGCTGT...................................	22	1	42.00	0.00	1.00	0.00	41.00	0.00
......................................................................................................................................TTGGTCCCCTTTAACCAGCTGT...................................	22	1	41.00	0.00	1.00	17.00	23.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCAGT...................................	22	1	41.00	0.00	1.00	16.00	24.00	0.00
......................................................................................................................................TTGGACCCCTTCAACCAGCTG....................................	21	1	40.00	0.00	0.00	7.00	33.00	0.00
......................................................................................................................................TTGGGCCCCTTCAACCAGCTGTT..................................	23	1	39.00	0.00	0.00	2.00	37.00	0.00
......................................................................................................................................TTGGTCCCCTTCACCCAGCTGC...................................	22	1	39.00	0.00	1.00	4.00	34.00	0.00

droWil1

-----------------------------------------------------------------------------TACAAC-ACTGAATGTAGCTGGTTGACATCGGGTCAGATCTATTTATT-TGAAGCATTTGGTCCCCTTCAACCAGCTGTAG-CAGTGGTTGATCCCAACAAAAAGCAA-TGGAA	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
......................................................................................................................................TTGGTCCCCTTCAACCAGCTGT...................................	22	1	82880.00	6492.00	22244.00	33342.00	20802.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTG....................................	21	1	20279.00	103.00	409.00	3203.00	16564.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCT.....................................	20	1	7048.00	108.00	111.00	6637.00	192.00
.............................................................................................AGCTGGTTGACATCGGGTCAGAT...........................................................................	23	1	4302.00	56.00	2704.00	1225.00	317.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTGC...................................	22	1	2859.00	10.00	38.00	86.00	2725.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTGG...................................	22	1	2731.00	1.00	3.00	6.00	2721.00
.............................................................................................AGCTGGTTGACATCGGGTCAGA............................................................................	22	1	2343.00	8.00	1688.00	472.00	175.00
......................................................................................................................................TTGGTCCCCTTCAACCAG.......................................	18	1	868.00	49.00	206.00	613.00	0.00
.......................................................................................................................................TTGTCCCCTTCAACCAGCTGT...................................	21	1	647.00	7.00	25.00	61.00	554.00
......................................................................................................................................TTGGTCCCCTTCAACCGGCTGT...................................	22	1	415.00	12.00	20.00	55.00	328.00
......................................................................................................................................TTTGTCCCCTTCAACCAGCTGT...................................	22	1	350.00	5.00	42.00	49.00	254.00
......................................................................................................................................TTGTTCCCCTTCAACCAGCTGT...................................	22	1	346.00	4.00	18.00	37.00	287.00
.............................................................................................AGCTGGTTGACATCGGGTCAG.............................................................................	21	1	278.00	1.00	78.00	180.00	19.00
......................................................................................................................................TTGGTCCCATTCAACCAGCTGT...................................	22	1	274.00	2.00	96.00	168.00	8.00
......................................................................................................................................TTGGTCCACTTCAACCAGCTGT...................................	22	1	260.00	0.00	90.00	163.00	7.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTGTT..................................	23	1	258.00	10.00	51.00	165.00	32.00
......................................................................................................................................TTGGCCCCCTTCAACCAGCTGT...................................	22	1	224.00	20.00	65.00	98.00	41.00
......................................................................................................................................TTCGTCCCCTTCAACCAGCTGT...................................	22	1	218.00	4.00	14.00	35.00	165.00
......................................................................................................................................TTGGTCCCCTTAAACCAGCTGT...................................	22	1	171.00	0.00	22.00	145.00	4.00
......................................................................................................................................TTGGTACCCTTCAACCAGCTGT...................................	22	1	161.00	1.00	36.00	121.00	3.00
......................................................................................................................................CTGGTCCCCTTCAACCAGCTGT...................................	22	1	160.00	10.00	30.00	113.00	7.00
.......................................................................................................................................TTGTCCCCTTCAACCAGCTG....................................	20	1	158.00	0.00	2.00	21.00	135.00
......................................................................................................................................TTGGTCCCCTTCAACCAGATGT...................................	22	1	157.00	1.00	28.00	128.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACAAGCTGT...................................	22	1	157.00	1.00	26.00	128.00	2.00
......................................................................................................................................TTGGTCCCCTTCAAACAGCTGT...................................	22	1	140.00	1.00	6.00	132.00	1.00
......................................................................................................................................TTGCTCCCCTTCAACCAGCTGT...................................	22	1	124.00	5.00	15.00	31.00	73.00
......................................................................................................................................TTGTTCCCCTTCAACCAGCTG....................................	21	1	119.00	0.00	2.00	12.00	105.00
......................................................................................................................................TTGGGCCCCTTCAACCAGCTGT...................................	22	1	107.00	6.00	6.00	17.00	78.00
......................................................................................................................................TTGGTCCCCTTCAATCAGCTGT...................................	22	1	105.00	6.00	9.00	56.00	34.00
......................................................................................................................................TTGGTCCCCTTCGACCAGCTGT...................................	22	1	103.00	6.00	19.00	32.00	46.00
......................................................................................................................................TTGGTCCCCTTCAACCAGC......................................	19	1	102.00	1.00	0.00	1.00	100.00
.........................................................................................................................................GTCCCCTTCAACCAGCTGT...................................	19	1	101.00	0.00	1.00	15.00	85.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTGTA..................................	23	1	99.00	2.00	18.00	50.00	29.00
......................................................................................................................................TTGGTCCCCCTCAACCAGCTGT...................................	22	1	98.00	12.00	20.00	58.00	8.00
......................................................................................................................................TTGGTCCCCTTCAACCATCTGT...................................	22	1	95.00	7.00	46.00	30.00	12.00
......................................................................................................................................TTGGTCCCCTTCAACTAGCTGT...................................	22	1	90.00	6.00	19.00	53.00	12.00
......................................................................................................................................TTGGTCCCCTTCAACCACCTGT...................................	22	1	87.00	6.00	27.00	48.00	6.00
......................................................................................................................................TTGATCCCCTTCAACCAGCTGT...................................	22	1	87.00	10.00	14.00	52.00	11.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCCGT...................................	22	1	86.00	5.00	21.00	48.00	12.00
.......................................................................................................................................TGGTCCCCTTCAACCAGCTGT...................................	21	1	86.00	9.00	16.00	47.00	14.00
......................................................................................................................................TTAGTCCCCTTCAACCAGCTGT...................................	22	1	85.00	2.00	12.00	54.00	17.00
.......................................................................................................................................TTGTCCCCTTCAACCAGCTGC...................................	21	1	83.00	0.00	0.00	0.00	83.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCGG....................................	21	1	83.00	0.00	0.00	0.00	83.00
......................................................................................................................................TTGGTCCCCTCCAACCAGCTGT...................................	22	1	81.00	4.00	22.00	48.00	7.00
......................................................................................................................................TTTGTCCCCTTCAACCAGCTG....................................	21	1	80.00	0.00	0.00	5.00	75.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTT....................................	21	1	78.00	2.00	5.00	70.00	1.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTGA...................................	22	1	77.00	5.00	4.00	59.00	9.00
......................................................................................................................................TTGGTCCCCTTCAACCAACTGT...................................	22	1	77.00	5.00	4.00	61.00	7.00
......................................................................................................................................TTGGTCCCCTTCAACCGGCTGG...................................	22	1	76.00	0.00	0.00	0.00	76.00
......................................................................................................................................TTGGTCCTCTTCAACCAGCTGT...................................	22	1	76.00	1.00	20.00	49.00	6.00
......................................................................................................................................TTGGTCACCTTCAACCAGCTGT...................................	22	1	76.00	1.00	49.00	22.00	4.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTAT...................................	22	1	72.00	3.00	12.00	55.00	2.00
......................................................................................................................................ATGGTCCCCTTCAACCAGCTGT...................................	22	1	71.00	0.00	7.00	63.00	1.00
......................................................................................................................................TTGGACCCCTTCAACCAGCTGT...................................	22	1	68.00	4.00	16.00	34.00	14.00
.........................................................................................................................................TTCCCCTTCAACCAGCTGT...................................	19	1	67.00	2.00	2.00	5.00	58.00
......................................................................................................................................TCGGTCCCCTTCAACCAGCTGT...................................	22	1	66.00	6.00	21.00	33.00	6.00
.......................................................................................................................................TTGTCCCCTTCAACCAGCTGG...................................	21	1	66.00	0.00	0.00	0.00	66.00
.....................................................................................................................................CTTGGTCCCCTTCAACCAGCTGT...................................	23	1	62.00	1.00	32.00	29.00	0.00
......................................................................................................................................GTGGTCCCCTTCAACCAGCTGT...................................	22	1	60.00	1.00	5.00	54.00	0.00
......................................................................................................................................TTGGTTCCCTTCAACCAGCTGT...................................	22	1	59.00	4.00	16.00	34.00	5.00
......................................................................................................................................TTCGTCCCCTTCAACCAGCTG....................................	21	1	52.00	0.00	0.00	5.00	47.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTTT...................................	22	1	52.00	1.00	22.00	28.00	1.00
......................................................................................................................................TTGGTCCCTTTCAACCAGCTGT...................................	22	1	50.00	4.00	9.00	29.00	8.00
......................................................................................................................................TTGGTCCCCTTCCACCAGCTGT...................................	22	1	47.00	2.00	7.00	14.00	24.00
.....................................................................................................................TxTTAATT-TGAAGTATTTGGT....................................................	20	1	46.00	3.00	42.00	1.00	0.00
......................................................................................................................................TTGGTCCCCTTCGACCAGCTG....................................	21	1	44.00	0.00	2.00	1.00	41.00
......................................................................................................................................TTGGTCCCCTTCAACCAGTTGT...................................	22	1	44.00	3.00	10.00	27.00	4.00
......................................................................................................................................TTGGTCTCCTTCAACCAGCTGT...................................	22	1	44.00	4.00	17.00	16.00	7.00
......................................................................................................................................TTGGTCCCCTTCAACCCGCTGT...................................	22	1	44.00	2.00	5.00	36.00	1.00
......................................................................................................................................TTGGTCCCCTTCAACCTGCTGT...................................	22	1	42.00	6.00	4.00	28.00	4.00
......................................................................................................................................TTGGGCCCCTTCAACCAGCTG....................................	21	1	42.00	0.00	0.00	1.00	41.00
......................................................................................................................................TTGGTCCCCTTCAAxCAGCTGT...................................	21	1	42.00	0.00	1.00	32.00	9.00
......................................................................................................................................TTGGCCCCCTTCAACCAGCTG....................................	21	1	41.00	1.00	1.00	9.00	30.00
......................................................................................................................................TTGGTCCCCTTCAGCCAGCTGT...................................	22	1	41.00	1.00	13.00	20.00	7.00
......................................................................................................................................TTGTTCCCCTTCAACCAGCTGG...................................	22	1	40.00	0.00	0.00	0.00	40.00
......................................................................................................................................TTGGTCCACTTCAACCAGCT.....................................	20	1	40.00	0.00	1.00	39.00	0.00
......................................................................................................................................TTGGTCCCCTTTAACCAGCTGT...................................	22	1	39.00	3.00	7.00	22.00	7.00
......................................................................................................................................TTGGTCCCCTTCAACCGGCTGC...................................	22	1	37.00	0.00	0.00	0.00	37.00
......................................................................................................................................TTGCTCCCCTTCAACCAGCTG....................................	21	1	37.00	0.00	0.00	2.00	35.00
......................................................................................................................................TTGGTCCCCTTCACCCAGCTGT...................................	22	1	35.00	3.00	7.00	24.00	1.00
......................................................................................................................................TTTGTCCCCTTCAACCAGCTGC...................................	22	1	35.00	0.00	0.00	0.00	35.00
..........................................................................................................................................TCCCCTTCAACCAGCTGT...................................	18	1	33.00	1.00	1.00	1.00	30.00
......................................................................................................................................TTTGTCCCCTTCAACCAGCTGG...................................	22	1	32.00	0.00	0.00	0.00	32.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTCT...................................	22	1	32.00	1.00	8.00	22.00	1.00
......................................................................................................................................TTGGTCCCCTTCAACCGGCTG....................................	21	1	31.00	0.00	0.00	0.00	31.00
......................................................................................................................................TTGGTACCCTTCAACCAGCT.....................................	20	1	28.00	0.00	0.00	28.00	0.00
......................................................................................................................................TTGGTCCCATTCAACCAGCTG....................................	21	1	28.00	0.00	2.00	16.00	10.00
......................................................................................................................................TTCGTCCCCTTCAACCAGCTGC...................................	22	1	27.00	0.00	0.00	0.00	27.00
......................................................................................................................................TTGGTCCCCTTCAACCAGAT.....................................	20	1	27.00	0.00	0.00	27.00	0.00
......................................................................................................................................TTGGTCCCATTCAACCAGCT.....................................	20	1	27.00	0.00	0.00	27.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACTAGCTG....................................	21	1	26.00	0.00	0.00	9.00	17.00
......................................................................................................................................TTGGTCCCCTTCAACAAGCT.....................................	20	1	26.00	0.00	0.00	26.00	0.00
......................................................................................................................................TTGTTCCCCTTCAACCAGCTGC...................................	22	1	26.00	0.00	0.00	0.00	26.00
......................................................................................................................................TTCGTCCCCTTCAACCAGCTGG...................................	22	1	26.00	0.00	0.00	0.00	26.00
.............................................................................................AGCTGGTTGACATCGGGTCA..............................................................................	20	1	25.00	0.00	5.00	19.00	1.00
......................................................................................................................................TTGGTCCACTTCAACCAGCTG....................................	21	1	25.00	0.00	0.00	18.00	7.00
......................................................................................................................................TTGGTCCCCTTCAACCTGT......................................	19	1	25.00	2.00	4.00	18.00	1.00
.............................................................................................AGCTGGTTGACATCGGGCCAGAT...........................................................................	23	1	24.00	0.00	19.00	5.00	0.00
.........................................................................................................................................GTCCCCTTCAACCAGCTG....................................	18	1	24.00	0.00	0.00	0.00	24.00
......................................................................................................................................TTGGTCCCCTTCAAACAGCT.....................................	20	1	24.00	0.00	0.00	24.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCC.....................................	20	1	23.00	0.00	0.00	9.00	14.00

droVir3

CAAAA-TAATAATAATATGAACCAAACGAAGATA--TATATTG-CCA-A--TCG---A---ATCA--------CATTCACAAC-GCTGTGTGTAGTTGGTTGACATCGGGTCAGATCTATTT--CTGAAAGCATTTGGTCCCCTTCAACCAGCTGTAG-CAGTGGTTGAAGCCAACAA-------------	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
......................................................................................................................................TTGGTCCCCTTCAACCAGCTGT...................................	22	1	21944.00	5119.00	12031.00	1062.00	305.00	3427.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTG....................................	21	1	5553.00	113.00	1291.00	17.00	952.00	3180.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCT.....................................	20	1	1846.00	107.00	1692.00	1.00	4.00	42.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTGG...................................	22	1	796.00	17.00	19.00	2.00	62.00	696.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTGC...................................	22	1	742.00	7.00	124.00	10.00	34.00	567.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTGTT..................................	23	1	491.00	98.00	357.00	14.00	3.00	19.00
.............................................................................................AGTTGGTTGACATCGGGTCAGAT...........................................................................	23	1	125.00	11.00	66.00	21.00	9.00	18.00
......................................................................................................................................TGGGTCCCCTTCAACCAGCTGT...................................	22	1	115.00	1.00	112.00	2.00	0.00	0.00
......................................................................................................................................TTGGTCACCTTCAACCAGCTGT...................................	22	1	110.00	3.00	103.00	2.00	0.00	2.00
......................................................................................................................................TTGGGCCCCTTCAACCAGCTGT...................................	22	1	95.00	5.00	83.00	3.00	0.00	4.00
......................................................................................................................................TTGGACCCCTTCAACCAGCTGT...................................	22	1	74.00	2.00	68.00	2.00	0.00	2.00
......................................................................................................................................TTGGTCCCCTTCAACCAG.......................................	18	1	74.00	45.00	24.00	5.00	0.00	0.00
.............................................................................................AGTTGGTTGACATCGGGTCAGA............................................................................	22	1	62.00	7.00	13.00	36.00	0.00	6.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCGG....................................	21	1	54.00	0.00	2.00	1.00	17.00	34.00
......................................................................................................................................TTGGTCCCCTTCAACCCGCTGT...................................	22	1	47.00	2.00	35.00	7.00	0.00	3.00
......................................................................................................................................TTGGCCCCCTTCAACCAGCTGT...................................	22	1	47.00	9.00	30.00	4.00	0.00	4.00
......................................................................................................................................TTGGTCCCCTTCAACCATCTGT...................................	22	1	47.00	1.00	39.00	6.00	0.00	1.00
.......................................................................................................................................TTGTCCCCTTCAACCAGCTGT...................................	21	1	45.00	2.00	4.00	0.00	4.00	35.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTCT...................................	22	1	44.00	3.00	35.00	5.00	0.00	1.00
......................................................................................................................................CTGGTCCCCTTCAACCAGCTGT...................................	22	1	44.00	12.00	28.00	1.00	1.00	2.00
......................................................................................................................................TTGGTCCCCGTCAACCAGCTGT...................................	22	1	43.00	0.00	40.00	2.00	0.00	1.00
......................................................................................................................................TTGGTCCCCTTCACCCAGCTGT...................................	22	1	42.00	5.00	34.00	3.00	0.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTGTA..................................	23	1	36.00	4.00	25.00	0.00	0.00	7.00
......................................................................................................................................TTTGTCCCCTTCAACCAGCTGT...................................	22	1	33.00	3.00	15.00	2.00	2.00	11.00
......................................................................................................................................TTGGTCCTCTTCAACCAGCTGT...................................	22	1	30.00	1.00	26.00	1.00	0.00	2.00
......................................................................................................................................TTGGTCCCATTCAACCAGCTGT...................................	22	1	30.00	2.00	22.00	3.00	0.00	3.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCCGT...................................	22	1	30.00	5.00	21.00	2.00	0.00	2.00
......................................................................................................................................TTGGTCCCCTTCGACCAGCTGT...................................	22	1	29.00	4.00	22.00	2.00	0.00	1.00
......................................................................................................................................TTGTTCCCCTTCAACCAGCTGT...................................	22	1	28.00	5.00	2.00	4.00	1.00	16.00
......................................................................................................................................TTGCTCCCCTTCAACCAGCTGT...................................	22	1	28.00	1.00	17.00	3.00	0.00	7.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTGTTT-................................	24	1	28.00	3.00	25.00	0.00	0.00	0.00
......................................................................................................................................TTGGTACCCTTCAACCAGCTGT...................................	22	1	27.00	0.00	26.00	0.00	1.00	0.00
......................................................................................................................................TTGGTCCCCTTCCACCAGCTGT...................................	22	1	26.00	1.00	16.00	9.00	0.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACAAGCTGT...................................	22	1	25.00	4.00	21.00	0.00	0.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTGA...................................	22	1	23.00	5.00	18.00	0.00	0.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACCGGCTGT...................................	22	1	23.00	5.00	12.00	0.00	0.00	6.00
.......................................................................................................................................TGGTCCCCTTCAACCAGCTGT...................................	21	1	22.00	4.00	14.00	1.00	3.00	0.00
.........................................................................................................................................GTCCCCTTCAACCAGCTGT...................................	19	1	22.00	2.00	3.00	0.00	1.00	16.00
......................................................................................................................................TTAGTCCCCTTCAACCAGCTGT...................................	22	1	22.00	0.00	17.00	3.00	0.00	2.00
.....................................................................................................................................CTTGGTCCCCTTCAACCAGCTGT...................................	23	1	22.00	4.00	14.00	3.00	0.00	1.00
......................................................................................................................................TTGGTCACCTTCAACCAGCT.....................................	20	1	22.00	1.00	21.00	0.00	0.00	0.00
......................................................................................................................................TTGGTCCCCTTCAGCCAGCTGT...................................	22	1	22.00	3.00	16.00	0.00	0.00	3.00
......................................................................................................................................TTGGTCCACTTCAACCAGCTGT...................................	22	1	22.00	4.00	17.00	0.00	0.00	1.00
......................................................................................................................................TTGATCCCCTTCAACCAGCTGT...................................	22	1	21.00	4.00	13.00	2.00	1.00	1.00
......................................................................................................................................TTGGTCCCCCTCAACCAGCTGT...................................	22	1	20.00	3.00	12.00	3.00	0.00	2.00
......................................................................................................................................TTGGTCCCCTTCAACCACCTGT...................................	22	1	20.00	4.00	14.00	2.00	0.00	0.00
......................................................................................................................................TTGGACCCCTTCAACCAGCT.....................................	20	1	20.00	0.00	20.00	0.00	0.00	0.00
......................................................................................................................................TTGTTCCCCTTCAACCAGCTG....................................	21	1	19.00	1.00	0.00	0.00	6.00	12.00
......................................................................................................................................TTGGTCCCCTTCAAACAGCTGT...................................	22	1	19.00	8.00	8.00	1.00	0.00	2.00
......................................................................................................................................TTGGTCCCTTTCAACCAGCTGT...................................	22	1	19.00	2.00	14.00	1.00	0.00	2.00
......................................................................................................................................TTGGTCCCCTTCAACCAGC......................................	19	1	19.00	0.00	7.00	0.00	0.00	12.00
......................................................................................................................................TTGGTCCCCTGCAACCAGCTGT...................................	22	1	19.00	1.00	18.00	0.00	0.00	0.00
......................................................................................................................................TTGGTCTCCTTCAACCAGCTGT...................................	22	1	18.00	1.00	15.00	1.00	1.00	0.00
......................................................................................................................................TTCGTCCCCTTCAACCAGCTGT...................................	22	1	18.00	1.00	4.00	2.00	0.00	11.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTAT...................................	22	1	18.00	3.00	12.00	2.00	0.00	1.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTTT...................................	22	1	17.00	2.00	12.00	3.00	0.00	0.00
......................................................................................................................................TGGGTCACCTTCAACCAGCTGT...................................	22	1	17.00	0.00	17.00	0.00	0.00	0.00
......................................................................................................................................TTGGTCCCCTCCAACCAGCTGT...................................	22	1	16.00	4.00	10.00	2.00	0.00	0.00
......................................................................................................................................TTGGCCCCCTTCAACCAGCTG....................................	21	1	15.00	0.00	4.00	0.00	0.00	11.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTGTC..................................	23	1	15.00	5.00	7.00	3.00	0.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACCAACTGT...................................	22	1	15.00	8.00	7.00	0.00	0.00	0.00
......................................................................................................................................TGGGTCCCCGTCAACCAGCTGT...................................	22	1	15.00	0.00	14.00	1.00	0.00	0.00
.......................................................................................................................................TTGTCCCCTTCAACCAGCTG....................................	20	1	15.00	0.00	1.00	0.00	3.00	11.00
......................................................................................................................................TTGGACCCCTTCAACCAGCTG....................................	21	1	15.00	0.00	11.00	0.00	1.00	3.00
......................................................................................................................................TTGGTCCCCTTCAATCAGCTGT...................................	22	1	14.00	3.00	8.00	1.00	0.00	2.00
......................................................................................................................................TGGGACCCCTTCAACCAGCTGT...................................	22	1	14.00	0.00	14.00	0.00	0.00	0.00
......................................................................................................................................TTGGGCCCCTGCAACCAGCTGT...................................	22	1	14.00	0.00	14.00	0.00	0.00	0.00
......................................................................................................................................TTGGTCCCCTTCTACCAGCTGT...................................	22	1	14.00	1.00	13.00	0.00	0.00	0.00
......................................................................................................................................TTGGTCCCCTTCACCCAGCTG....................................	21	1	14.00	0.00	14.00	0.00	0.00	0.00
..........................................................................................................................................TCCCCTTCAACCAGCTGT...................................	18	1	13.00	1.00	3.00	0.00	2.00	7.00
......................................................................................................................................TTGGTCACCGTCAACCAGCTGT...................................	22	1	13.00	0.00	13.00	0.00	0.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACCTGCTGT...................................	22	1	13.00	0.00	13.00	0.00	0.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCGGT...................................	22	1	12.00	1.00	11.00	0.00	0.00	0.00
......................................................................................................................................TTGGTCCCCTTAAACCAGCTGT...................................	22	1	12.00	2.00	7.00	0.00	0.00	3.00
......................................................................................................................................TTGGTTCCCTTCAACCAGCTGT...................................	22	1	11.00	1.00	9.00	0.00	0.00	1.00
......................................................................................................................................TTGGTCACCTTCAACCAGCTG....................................	21	1	11.00	1.00	9.00	0.00	0.00	1.00
......................................................................................................................................TTGGTCCCCTTCATCCAGCTGT...................................	22	1	11.00	0.00	11.00	0.00	0.00	0.00
......................................................................................................................................TTGGTGCCCTTCAACCAGCTGT...................................	22	1	11.00	1.00	9.00	0.00	0.00	1.00
......................................................................................................................................TTGGGCCCCTTCAACCAGCT.....................................	20	1	11.00	0.00	11.00	0.00	0.00	0.00
......................................................................................................................................TGGGTCCCCTTCAACCAGCTG....................................	21	1	11.00	0.00	10.00	0.00	0.00	1.00
......................................................................................................................................TCGGTCCCCTTCAACCAGCTGT...................................	22	1	11.00	3.00	4.00	2.00	0.00	2.00
.......................................................................................................................................TTGTCCCCTTCAACCAGCTGC...................................	21	1	10.00	0.00	0.00	0.00	0.00	10.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTT....................................	21	1	10.00	2.00	7.00	1.00	0.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTA....................................	21	1	10.00	1.00	1.00	0.00	0.00	8.00
.......................................................................................................................................TTGTCCCCTTCAACCAGCTGG...................................	21	1	10.00	0.00	0.00	0.00	0.00	10.00
......................................................................................................................................TTGGTCCCCTTCAACTAGCTGT...................................	22	1	10.00	3.00	6.00	1.00	0.00	0.00
......................................................................................................................................TTGGTCACCTTCAACCAGCTGC...................................	22	1	10.00	0.00	10.00	0.00	0.00	0.00
......................................................................................................................................TTGGTCCGCTTCAACCAGCTGT...................................	22	1	9.00	1.00	7.00	0.00	0.00	1.00
......................................................................................................................................TTTGTCCCCTTCAACCAGCTG....................................	21	1	9.00	1.00	1.00	0.00	0.00	7.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCC.....................................	20	1	8.00	0.00	3.00	0.00	1.00	4.00
......................................................................................................................................TGGGTCCCCTTCAACCAGCT.....................................	20	1	8.00	0.00	8.00	0.00	0.00	0.00
......................................................................................................................................TTGGTCCCCGTCAACCAGCTG....................................	21	1	8.00	0.00	8.00	0.00	0.00	0.00
......................................................................................................................................TGGGGCCCCTTCAACCAGCTGT...................................	22	1	8.00	0.00	8.00	0.00	0.00	0.00
......................................................................................................................................TTGGTCCCCTTCACCCAGCT.....................................	20	1	8.00	0.00	8.00	0.00	0.00	0.00
......................................................................................................................................TTGGGCCCCTTCAACCAGCTG....................................	21	1	8.00	0.00	7.00	0.00	1.00	0.00
......................................................................................................................................CTGGTCACCTTCAACCAGCTGT...................................	22	1	8.00	0.00	8.00	0.00	0.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACCCGCT.....................................	20	1	8.00	0.00	8.00	0.00	0.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACCAGATGT...................................	22	1	8.00	1.00	6.00	0.00	1.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCCG....................................	21	1	8.00	1.00	6.00	0.00	0.00	1.00
......................................................................................................................................TTGGCCCCCTTCAACCAGCT.....................................	20	1	7.00	0.00	7.00	0.00	0.00	0.00
......................................................................................................................................TTGGTCCCCGTCAACCAGCTGC...................................	22	1	7.00	0.00	6.00	0.00	0.00	1.00

droMoj3

caaaaaaaataataataataa-taataaATTCTAAAAACATGAAATAAATTGTG--TTGTGTACTCAAACAAACATCCACAAC-GCTGTGTGTAGTTGGTTGACATCGGGTCAGATCTGTTT--T-TCGAGAATTTGGTCCCCTTCAACCAGCTGTAG-CAGTGGTTGATGACAACAA--GTTGA-----G	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
......................................................................................................................................TTGGTCCCCTTCAACCAGCTGT...................................	22	1	108552.00	9951.00	53267.00	44606.00	728.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTGTT..................................	23	1	3743.00	148.00	1972.00	1616.00	7.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTG....................................	21	1	2616.00	133.00	1355.00	1119.00	9.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCT.....................................	20	1	2287.00	138.00	1169.00	980.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACCCGCTGT...................................	22	1	2148.00	2.00	178.00	1961.00	7.00
......................................................................................................................................TTGGTCCCCTTCCACCAGCTGT...................................	22	1	786.00	0.00	74.00	703.00	9.00
......................................................................................................................................TTGGTCCCCTTCAACCAG.......................................	18	1	462.00	70.00	213.00	178.00	1.00
......................................................................................................................................TTGGGCCCCTTCAACCAGCTGT...................................	22	1	441.00	2.00	262.00	174.00	3.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTGC...................................	22	1	430.00	9.00	281.00	136.00	4.00
......................................................................................................................................TTGGTCCCCTTCACCCAGCTGT...................................	22	1	416.00	0.00	131.00	282.00	3.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTGTTT-................................	24	1	414.00	7.00	218.00	187.00	2.00
......................................................................................................................................TGGGTCCCCTTCAACCAGCTGT...................................	22	1	369.00	0.00	235.00	133.00	1.00
......................................................................................................................................TTGGACCCCTTCAACCAGCTGT...................................	22	1	365.00	6.00	277.00	81.00	1.00
......................................................................................................................................TTGGCCCCCTTCAACCAGCTGT...................................	22	1	280.00	12.00	183.00	85.00	0.00
......................................................................................................................................TTGGTCCCCTTCCACCCGCTGT...................................	22	1	210.00	0.00	5.00	204.00	1.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTGTA..................................	23	1	205.00	8.00	100.00	94.00	3.00
......................................................................................................................................TTGGTCCCCTTCTACCAGCTGT...................................	22	1	196.00	0.00	63.00	132.00	1.00
......................................................................................................................................TTGGTCACCTTCAACCAGCTGT...................................	22	1	189.00	9.00	110.00	67.00	3.00
......................................................................................................................................TTAGTCCCCTTCAACCAGCTGT...................................	22	1	188.00	5.00	45.00	135.00	3.00
......................................................................................................................................TTGGTCCCCCTCAACCAGCTGT...................................	22	1	180.00	9.00	84.00	86.00	1.00
......................................................................................................................................TTGGTCCCCTTCAACCATCTGT...................................	22	1	175.00	11.00	60.00	104.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACAAGCTGT...................................	22	1	175.00	6.00	116.00	52.00	1.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCCGT...................................	22	1	165.00	6.00	78.00	81.00	0.00
......................................................................................................................................TTGGTCCCCTTCGACCAGCTGT...................................	22	1	161.00	2.00	88.00	70.00	1.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTGA...................................	22	1	157.00	7.00	80.00	70.00	0.00
......................................................................................................................................TTGCTCCCCTTCAACCAGCTGT...................................	22	1	155.00	1.00	56.00	98.00	0.00
......................................................................................................................................CTGGTCCCCTTCAACCAGCTGT...................................	22	1	155.00	5.00	88.00	62.00	0.00
.............................................................................................AGTTGGTTGACATCGGGTCAGAT...........................................................................	23	1	150.00	17.00	69.00	47.00	17.00
......................................................................................................................................TTGGTCCCCTTCACCCCGCTGT...................................	22	1	147.00	0.00	22.00	125.00	0.00
......................................................................................................................................TTGGTCCACTTCAACCAGCTGT...................................	22	1	146.00	13.00	91.00	40.00	2.00
......................................................................................................................................TTGGTCCCCTTCAGCCAGCTGT...................................	22	1	142.00	4.00	79.00	57.00	2.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTTT...................................	22	1	139.00	3.00	28.00	108.00	0.00
......................................................................................................................................TTGGTCCCCGTCAACCAGCTGT...................................	22	1	136.00	1.00	78.00	57.00	0.00
......................................................................................................................................TTGGTCCCATTCAACCAGCTGT...................................	22	1	135.00	12.00	79.00	41.00	3.00
......................................................................................................................................TTGGTCCCCTTCAACCGGCTGT...................................	22	1	126.00	6.00	75.00	44.00	1.00
......................................................................................................................................TTGGTCCCCTCCAACCAGCTGT...................................	22	1	120.00	2.00	65.00	52.00	1.00
......................................................................................................................................TTGGTCCCTTTCAACCAGCTGT...................................	22	1	111.00	5.00	57.00	48.00	1.00
......................................................................................................................................TTGGTACCCTTCAACCAGCTGT...................................	22	1	111.00	8.00	55.00	47.00	1.00
......................................................................................................................................TCGGTCCCCTTCAACCAGCTGT...................................	22	1	108.00	2.00	65.00	37.00	4.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTGG...................................	22	1	107.00	1.00	45.00	60.00	1.00
......................................................................................................................................TTGGTCTCCTTCAACCAGCTGT...................................	22	1	107.00	3.00	56.00	47.00	1.00
......................................................................................................................................TTGGTCCTCTTCAACCAGCTGT...................................	22	1	107.00	4.00	52.00	47.00	4.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTCT...................................	22	1	95.00	2.00	53.00	39.00	1.00
......................................................................................................................................TTGGTCCCCTGCAACCAGCTGT...................................	22	1	95.00	0.00	56.00	39.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTAT...................................	22	1	94.00	6.00	31.00	56.00	1.00
......................................................................................................................................TTGATCCCCTTCAACCAGCTGT...................................	22	1	93.00	3.00	36.00	52.00	2.00
.....................................................................................................................................CTTGGTCCCCTTCAACCAGCTGT...................................	23	1	92.00	1.00	52.00	38.00	1.00
......................................................................................................................................TTGGTCCCCTTCAACCAGATGT...................................	22	1	88.00	4.00	44.00	39.00	1.00
......................................................................................................................................TTGGTCCCCTTCAACTAGCTGT...................................	22	1	85.00	4.00	40.00	40.00	1.00
......................................................................................................................................TTGGTCCCCTTCAAACAGCTGT...................................	22	1	82.00	0.00	30.00	51.00	1.00
......................................................................................................................................TTGGTCCCCTTCAACCCGCTGTT..................................	23	1	82.00	0.00	12.00	70.00	0.00
......................................................................................................................................TTTGTCCCCTTCAACCAGCTGT...................................	22	1	81.00	8.00	32.00	41.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACCACCTGT...................................	22	1	77.00	3.00	50.00	24.00	0.00
.......................................................................................................................................TGGTCCCCTTCAACCAGCTGT...................................	21	1	73.00	2.00	39.00	30.00	2.00
......................................................................................................................................TTGGTCCCCTTCAATCAGCTGT...................................	22	1	72.00	2.00	38.00	32.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACCTGCTGT...................................	22	1	66.00	0.00	38.00	28.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTGTC..................................	23	1	60.00	6.00	26.00	28.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACCAACTGT...................................	22	1	59.00	3.00	14.00	41.00	1.00
......................................................................................................................................ATGGTCCCCTTCAACCAGCTGT...................................	22	1	58.00	2.00	31.00	25.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACCCGCTG....................................	21	1	58.00	0.00	7.00	51.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTT....................................	21	1	56.00	3.00	29.00	24.00	0.00
.............................................................................................AGTTGGTTGACATCGGGTCAGA............................................................................	22	1	54.00	5.00	18.00	9.00	22.00
......................................................................................................................................TGGGTCCCCTTCTACCAGCTGT...................................	22	1	53.00	0.00	17.00	36.00	0.00
......................................................................................................................................TGGGACCCCTTCAACCAGCTGT...................................	22	1	53.00	0.00	48.00	5.00	0.00
......................................................................................................................................TTGGTCCGCTTCAACCAGCTGT...................................	22	1	50.00	1.00	33.00	16.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACCCGCT.....................................	20	1	50.00	0.00	3.00	47.00	0.00
......................................................................................................................................TTGGTCCCCTTAAACCAGCTGT...................................	22	1	49.00	3.00	17.00	28.00	1.00
........................................................................................................................................GGTCCCCTTCAACCAGCTGT...................................	20	1	49.00	4.00	22.00	23.00	0.00
......................................................................................................................................TTGGTTCCCTTCAACCAGCTGT...................................	22	1	49.00	7.00	19.00	23.00	0.00
......................................................................................................................................TTGGGCCCCTGCAACCAGCTGT...................................	22	1	48.00	0.00	33.00	15.00	0.00
......................................................................................................................................TTGCACCCCTTCAACCAGCTGT...................................	22	1	48.00	0.00	31.00	17.00	0.00
......................................................................................................................................TTGGACCCCTTCAACAAGCTGT...................................	22	1	47.00	0.00	39.00	8.00	0.00
......................................................................................................................................GTGGTCCCCTTCAACCAGCTGT...................................	22	1	47.00	3.00	24.00	19.00	1.00
......................................................................................................................................TTGGTCCCCTTTAACCAGCTGT...................................	22	1	45.00	5.00	19.00	21.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACCAGTTGT...................................	22	1	42.00	2.00	23.00	16.00	1.00
......................................................................................................................................TTGTTCCCCTTCAACCAGCTGT...................................	22	1	41.00	16.00	13.00	12.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTGTTA-................................	24	1	40.00	0.00	20.00	20.00	0.00
......................................................................................................................................TTGCTCCCCTTCTACCAGCTGT...................................	22	1	40.00	0.00	9.00	31.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACCCGCTGC...................................	22	1	39.00	0.00	14.00	25.00	0.00
......................................................................................................................................TTGGTCCCCTTCATCCAGCTGT...................................	22	1	38.00	0.00	28.00	10.00	0.00
......................................................................................................................................TAGGTCCCCTTCAACCAGCTGT...................................	22	1	37.00	0.00	30.00	7.00	0.00
......................................................................................................................................TGGGTCCCCGTCAACCAGCTGT...................................	22	1	35.00	0.00	23.00	12.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTGTTG-................................	24	1	35.00	1.00	24.00	10.00	0.00
......................................................................................................................................TTCGTCCCCTTCAACCAGCTGT...................................	22	1	35.00	3.00	16.00	16.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCGGT...................................	22	1	34.00	0.00	27.00	7.00	0.00
......................................................................................................................................TTGGGCACCTTCAACCAGCTGT...................................	22	1	33.00	0.00	22.00	11.00	0.00
......................................................................................................................................TTGGTCCCCTTCCACCAGCTGTT..................................	23	1	32.00	0.00	5.00	27.00	0.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTGCT..................................	23	1	32.00	0.00	15.00	17.00	0.00
......................................................................................................................................TTGGTGCCCTTCAACCAGCTGT...................................	22	1	32.00	2.00	18.00	11.00	1.00
......................................................................................................................................TTGGTCCCCTTCACCCAGCTGC...................................	22	1	32.00	0.00	22.00	10.00	0.00
......................................................................................................................................TGGCTCCCCTTCAACCAGCTGT...................................	22	1	30.00	0.00	16.00	14.00	0.00
......................................................................................................................................TGGGTCCCCTGCAACCAGCTGT...................................	22	1	30.00	0.00	22.00	8.00	0.00
......................................................................................................................................TTGGACACCTTCAACCAGCTGT...................................	22	1	30.00	0.00	23.00	7.00	0.00
......................................................................................................................................TTGGCCCCCTTCAACCAGCTGC...................................	22	1	27.00	0.00	21.00	6.00	0.00
.......................................................................................................................................TTGTCCCCTTCAACCAGCTGT...................................	21	1	27.00	9.00	10.00	8.00	0.00
......................................................................................................................................TTGGTCCCCTACAACCAGCTGT...................................	22	1	27.00	1.00	16.00	10.00	0.00
......................................................................................................................................TTGGGCCCCTTCCACCAGCTGT...................................	22	1	26.00	0.00	6.00	20.00	0.00
......................................................................................................................................TTGGTCGCCTTCAACCAGCTGT...................................	22	1	25.00	0.00	16.00	9.00	0.00
......................................................................................................................................TTGGACTCCTTCAACCAGCTGT...................................	22	1	24.00	0.00	19.00	5.00	0.00
......................................................................................................................................TGGGTCCCCTTCAACCAGCTGG...................................	22	1	24.00	0.00	12.00	12.00	0.00

droGri2

CAACT-CAATAACATTAACAAACAAACAAAACTATATACATGA-TTAAT--TT-------GAATT--------TATTTACAAC-GCTGTATGTAGCTGGTTGACATCGGGTCAGATCTATTT--ATTCGAGTATTTGGTCCCCTTCAACCAGCTGTAG-CAGTGGTTGATGTCAACAA-------------	Size	Hit Count	Total Norm	V109 Male body
......................................................................................................................................TTGGTCCCCTTCAACCAGCTGT...................................	22	1	1348.00	1348.00
......................................................................................................................................TTGGTCCCCTTCAACCACCTGT...................................	22	1	20.00	20.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTG....................................	21	1	14.00	14.00
......................................................................................................................................TTGGTCCCCTTCAACCAG.......................................	18	1	11.00	11.00
......................................................................................................................................TTGGTCCCCTTCAACCAACTGT...................................	22	1	10.00	10.00
......................................................................................................................................TTCGTCCCCTTCAACCAGCTGT...................................	22	1	9.00	9.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTGTT..................................	23	1	9.00	9.00
......................................................................................................................................TTGGTCCCCTTCAACCATCTGT...................................	22	1	8.00	8.00
......................................................................................................................................TTGGTCCCTTTCAACCAGCTGT...................................	22	1	6.00	6.00
......................................................................................................................................TTGGTACCCTTCAACCAGCTGT...................................	22	1	6.00	6.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTGC...................................	22	1	5.00	5.00
......................................................................................................................................TCGGTCCCCTTCAACCAGCTGT...................................	22	1	4.00	4.00
......................................................................................................................................TTGGTGCCCTTCAACCAGCTGT...................................	22	1	3.00	3.00
......................................................................................................................................TTAGTCCCCTTCAACCAGCTGT...................................	22	1	3.00	3.00
.............................................................................................AGCTGGTTGACATCGGGTCAGAT...........................................................................	23	1	3.00	3.00
......................................................................................................................................TTGGTCCCCTTCAACAAGCTGT...................................	22	1	3.00	3.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCT.....................................	20	1	3.00	3.00
......................................................................................................................................TTGGTCCCCCTCAACCAGCTGT...................................	22	1	3.00	3.00
......................................................................................................................................TTGGACCCCTTCAACCAGCTGT...................................	22	1	3.00	3.00
......................................................................................................................................TTGGCCCCCTTCAACCAGCTGT...................................	22	1	3.00	3.00
......................................................................................................................................TTGGTCACCTTCAACCAGCTGT...................................	22	1	3.00	3.00
......................................................................................................................................TTGGTCCCCTTCATCCAGCTGT...................................	22	1	2.00	2.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCCGT...................................	22	1	2.00	2.00
.............................................................................................AGCTGGTTGACATCGGGTCAGA............................................................................	22	1	2.00	2.00
......................................................................................................................................TTGGTCCCCTTTAACCAGCTGT...................................	22	1	2.00	2.00
......................................................................................................................................TTTGTCCCCTTCAACCAGCTGT...................................	22	1	2.00	2.00
......................................................................................................................................TTGATCCCCTTCAACCAGCTGT...................................	22	1	2.00	2.00
......................................................................................................................................TTGGTCGCCTTCAACCAGCTGT...................................	22	1	2.00	2.00
......................................................................................................................................TTGGTCCCCTTCAACCAGATGT...................................	22	1	2.00	2.00
......................................................................................................................................TTGGTCCCCTTCAACCCGCTGT...................................	22	1	2.00	2.00
......................................................................................................................................TTGGTCCCATTCAACCAGCTGT...................................	22	1	2.00	2.00
......................................................................................................................................TTGGTCTCCTTCAACCAGCTGT...................................	22	1	2.00	2.00
......................................................................................................................................TTGGTTCCCTTCAACCAGCTGT...................................	22	1	2.00	2.00
......................................................................................................................................TTGGTCCCCTCCAACCAGCTGT...................................	22	1	2.00	2.00
......................................................................................................................................CTGGTCCCCTTCAACCAGCTGT...................................	22	1	1.00	1.00
......................................................................................................................................TTGGTCCCCTTCAACCTGCTGT...................................	22	1	1.00	1.00
......................................................................................................................................TTGGTCCCCTTCAACCCGCTG....................................	21	1	1.00	1.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTGG...................................	22	1	1.00	1.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTCT...................................	22	1	1.00	1.00
......................................................................................................................................TTGGTCCCCTACAACCAGCTGT...................................	22	1	1.00	1.00
.....................................................................................................................................CTTGGTTCCCTTCAACCAGCTGT...................................	23	1	1.00	1.00
.....................................................................................................................TATTT--ATTCGAGTATTTGGT....................................................	20	1	1.00	1.00
......................................................................................................................................TTGGTCCCTTTCAACCAGCTG....................................	21	1	1.00	1.00
......................................................................................................................................TTGGTCCCCTTCAAACAGCTGT...................................	22	1	1.00	1.00
......................................................................................................................................TAGGTCCCCTTCAACCAGCTGT...................................	22	1	1.00	1.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTGTC..................................	23	1	1.00	1.00
......................................................................................................................................TTGGTCCCCTTCAACCAACTG....................................	21	1	1.00	1.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCTGTA..................................	23	1	1.00	1.00
......................................................................................................................................TTGGTCCCCTTCAACCAGCAGT...................................	22	1	1.00	1.00
......................................................................................................................................TTGCTCCCCTTCAACCAGCTGC...................................	22	1	1.00	1.00
......................................................................................................................................TTGGTCCCCCTCACCCAGCTGT...................................	22	1	1.00	1.00
......................................................................................................................................TTGGTCCCCTTCAACCTGT......................................	19	1	1.00	1.00
......................................................................................................................................TTGCTCCCCTTCAACCAGCTGT...................................	22	1	1.00	1.00
......................................................................................................................................TTTGTCCCCTTCAACCCGCTGT...................................	22	1	1.00	1.00
......................................................................................................................................TTAGTCCCCTTCAACCAGCT.....................................	20	1	1.00	1.00

12-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droAna3	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image

20-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droEug1	droBia1	droTak1	droEle1	droRho1	droFic1	droKik1	droAna3	droBip1	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image