Possible Orthologs for dme-mir-133

droSim1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	chr2L:20179920-20180047 +	90.75	CATTCGAGAATTTCCACCTGCAACACTGTGTGTAGCTGGTTGACATCGGGTCAGATCTGTTTTTCAAGCATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTTGATGACAACGAAAGCCTAGTGAAC CATTCAAAAATCTGCACCTGCAACGCTGTGTGTAGCTGGTTGACATCGGGTCAGATCTGTTTTTTAAGCATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTTGCTGACATCGAAAGCCGAGGGAAC Size Hit Count Total Norm V044 Embryo M023 Head M024 Male body M025 Embryo .......................................................................TTGGTCCCCTTCAACCAGCTG.................................... 21 1 31156.00 94.00 28455.00 2379.00 228.00 .......................................................................TTGGTCCCCTTCAACCAGCTGT................................... 22 1 25738.00 1993.00 21624.00 904.00 1217.00 .......................................................................TTGGTCCCCTTCAACCAGCTGC................................... 22 1 4083.00 2.00 3799.00 104.00 178.00 .......................................................................TTGGTCCCCTTCAACCAGCTGG................................... 22 1 3695.00 6.00 3250.00 168.00 271.00 .................................AGCTGGTTGACATCGGGTCAGAT........................................................................ 23 1 652.00 221.00 258.00 12.00 161.00 ........................................................................TTGTCCCCTTCAACCAGCTGT................................... 21 1 561.00 0.00 489.00 10.00 62.00 .................................AGCTGGTTGACATCGGGTCAGA......................................................................... 22 1 418.00 174.00 106.00 2.00 136.00 .......................................................................TTGGTCCCCTTCAACCAGCGG.................................... 21 1 285.00 1.00 246.00 34.00 4.00 .......................................................................TTGGTCCCCTTCAACCAGCT..................................... 20 1 271.00 9.00 230.00 32.00 0.00 .......................................................................TTTGTCCCCTTCAACCAGCTGT................................... 22 1 211.00 1.00 182.00 2.00 26.00 ........................................................................TTGTCCCCTTCAACCAGCTG.................................... 20 1 206.00 0.00 196.00 4.00 6.00 .......................................................................TTCGTCCCCTTCAACCAGCTGT................................... 22 1 179.00 1.00 159.00 2.00 17.00 .......................................................................TTGTTCCCCTTCAACCAGCTGT................................... 22 1 157.00 0.00 145.00 1.00 11.00 .......................................................................TTGGTCCCCTTCAACCAGC...................................... 19 1 141.00 0.00 125.00 10.00 6.00 .......................................................................TTTGTCCCCTTCAACCAGCTG.................................... 21 1 106.00 0.00 98.00 1.00 7.00 .......................................................................TTGTTCCCCTTCAACCAGCTG.................................... 21 1 101.00 0.00 95.00 1.00 5.00 ..........................................................................GTCCCCTTCAACCAGCTGT................................... 19 1 98.00 0.00 90.00 2.00 6.00 .......................................................................TTGGTCCCCTTCAACCAGCTGTT.................................. 23 1 96.00 9.00 85.00 2.00 0.00 ........................................................................TTGTCCCCTTCAACCAGCTGC................................... 21 1 93.00 0.00 86.00 0.00 7.00 .......................................................................TTGGTCCCCTTCAACCGGCTGT................................... 22 1 80.00 1.00 75.00 3.00 1.00 ........................................................................TTGTCCCCTTCAACCAGCTGG................................... 21 1 76.00 0.00 64.00 1.00 11.00 .......................................................................TTCGTCCCCTTCAACCAGCTG.................................... 21 1 64.00 0.00 58.00 1.00 5.00 .......................................................................TTGGGCCCCTTCAACCAGCTGT................................... 22 1 63.00 13.00 46.00 3.00 1.00 .......................................................................TTGGTCCCCTTCAACCAGCTGTA.................................. 23 1 60.00 3.00 53.00 2.00 2.00 .......................................................................TTGCTCCCCTTCAACCAGCTGT................................... 22 1 58.00 0.00 52.00 0.00 6.00 .................................AGCTGGTTGACATCGGGTCAG.......................................................................... 21 1 56.00 15.00 25.00 5.00 11.00 .......................................................................TTGGGCCCCTTCAACCAGCTG.................................... 21 1 55.00 0.00 51.00 4.00 0.00 .......................................................................TTGGCCCCCTTCAACCAGCTGT................................... 22 1 47.00 4.00 40.00 1.00 2.00 ..........................................................................GTCCCCTTCAACCAGCTG.................................... 18 1 44.00 0.00 42.00 1.00 1.00 .......................................................................TTGCTCCCCTTCAACCAGCTG.................................... 21 1 41.00 0.00 38.00 3.00 0.00 .......................................................................TTGGCCCCCTTCAACCAGCTG.................................... 21 1 41.00 0.00 40.00 1.00 0.00 ..........................................................................TTCCCCTTCAACCAGCTGT................................... 19 1 41.00 0.00 39.00 0.00 2.00 .......................................................................TTTGTCCCCTTCAACCAGCTGC................................... 22 1 39.00 0.00 34.00 0.00 5.00 .................................AGCTGGTTGACATCGGGTCAGG......................................................................... 22 1 36.00 1.00 14.00 1.00 20.00 .......................................................................TTGGTCCCCTTCAACCCGCTGT................................... 22 1 36.00 34.00 2.00 0.00 0.00 .......................................................................TTGGTCCCCTTCAACCAGCCG.................................... 21 1 32.00 0.00 29.00 3.00 0.00 .......................................................................TTTGTCCCCTTCAACCAGCTGG................................... 22 1 32.00 0.00 26.00 0.00 6.00 .......................................................................TTGGTCCCCTTCAATCAGCTGT................................... 22 1 31.00 1.00 23.00 2.00 5.00 .......................................................................TTGGTCCCCTTCAACCGGCTGG................................... 22 1 29.00 0.00 27.00 2.00 0.00 .......................................................................TTCGTCCCCTTCAACCAGCTGC................................... 22 1 29.00 0.00 25.00 0.00 4.00 .......................................................................TTCGTCCCCTTCAACCAGCTGG................................... 22 1 29.00 0.00 21.00 1.00 7.00 ...........................................................................TCCCCTTCAACCAGCTGT................................... 18 1 29.00 0.00 26.00 1.00 2.00 .......................................................................TTGTTCCCCTTCAACCAGCTGC................................... 22 1 28.00 0.00 23.00 1.00 4.00 .......................................................................TTGGTCCCCTTCAACCGGCTG.................................... 21 1 27.00 0.00 25.00 2.00 0.00 .......................................................................TTGGTCCCCTTCAACCAGCC..................................... 20 1 27.00 0.00 23.00 4.00 0.00 .......................................................................TTGTTCCCCTTCAACCAGCTGG................................... 22 1 25.00 0.00 22.00 0.00 3.00 .......................................................................TTAGTCCCCTTCAACCAGCTGT................................... 22 1 25.00 0.00 23.00 1.00 1.00 ..........................................................................TTCCCCTTCAACCAGCTG.................................... 18 1 23.00 0.00 22.00 1.00 0.00 .......................................................................TTGGACCCCTTCAACCAGCTGT................................... 22 1 21.00 14.00 7.00 0.00 0.00 .......................................................................TTGGTCCCCTTCAACCAGCTGA................................... 22 1 21.00 3.00 15.00 3.00 0.00 .........................................................................TGTCCCCTTCAACCAGCTGT................................... 20 1 20.00 0.00 16.00 1.00 3.00 .......................................................................TTGGTCCCCTCCAACCAGCTGT................................... 22 1 19.00 4.00 11.00 0.00 4.00 .......................................................................CTGGTCCCCTTCAACCAGCTGT................................... 22 1 18.00 2.00 15.00 0.00 1.00 .......................................................................TTGGTCCCCTTCAATCAGCTG.................................... 21 1 18.00 0.00 16.00 2.00 0.00 .................................AGCTGGTTGACATCGGGTCAGAC........................................................................ 23 1 18.00 0.00 16.00 0.00 2.00 .......................................................................TTGGTCCCCTTCAACTAGCTG.................................... 21 1 18.00 0.00 18.00 0.00 0.00 .......................................................................TTGGTCCCCTTCAACCATCTGT................................... 22 1 17.00 3.00 13.00 1.00 0.00 ..........................................................................GTCCCCTTCAACCAGCTGG................................... 19 1 17.00 0.00 15.00 0.00 2.00 .................................AGCTGGTTGACATCGGGTC............................................................................ 19 1 17.00 0.00 16.00 1.00 0.00 .......................................................................TTGGTCCCCCTCAACCAGCTG.................................... 21 1 17.00 0.00 17.00 0.00 0.00 .......................................................................TTGGTCCCCCTCAACCAGCTGT................................... 22 1 17.00 0.00 17.00 0.00 0.00 .......................................................................TTGGTCCCCTTCCACCAGCTGT................................... 22 1 16.00 15.00 1.00 0.00 0.00 .......................................................................TTGGTCCCCTTCAGCCAGCTG.................................... 21 1 16.00 0.00 15.00 1.00 0.00 .......................................................................TTGGTCCCATTCAACCAGCTGT................................... 22 1 15.00 4.00 11.00 0.00 0.00 .......................................................................TTGGTCCCCTTCAACCGGCTGC................................... 22 1 15.00 0.00 14.00 0.00 1.00 ........................................................................TGGTCCCCTTCAACCAGCTG.................................... 20 1 14.00 0.00 13.00 1.00 0.00 .......................................................................TTGGTCCCCTTCAGCCAGCTGT................................... 22 1 14.00 2.00 10.00 0.00 2.00 ........................................................................TCGTCCCCTTCAACCAGCTGT................................... 21 1 14.00 0.00 13.00 0.00 1.00 .......................................................................TTGGTCCCCTTCAACCAGCTA.................................... 21 1 13.00 0.00 12.00 1.00 0.00 .......................................................................TTGATCCCCTTCAACCAGCTG.................................... 21 1 12.00 0.00 10.00 0.00 2.00 .......................................................................TTGGTCCCCTTCAACCAGCCGT................................... 22 1 12.00 4.00 8.00 0.00 0.00 .......................................................................TTAGTCCCCTTCAACCAGCTG.................................... 21 1 12.00 0.00 12.00 0.00 0.00 .......................................................................TTGGTCACCTTCAACCAGCTG.................................... 21 1 12.00 0.00 11.00 1.00 0.00 .......................................................................TTGGTCCCCTTCAAACAGCTGT................................... 22 1 12.00 3.00 8.00 0.00 1.00 .......................................................................TTGATCCCCTTCAACCAGCTGT................................... 22 1 12.00 1.00 9.00 0.00 2.00 ..........................................................................GTCCCCTTCAACCAGCTGC................................... 19 1 12.00 0.00 12.00 0.00 0.00 .......................................................................TTGGACCCCTTCAACCAGCTG.................................... 21 1 12.00 0.00 12.00 0.00 0.00 .......................................................................TTGGTCCCCTTCAACCAGCTAC................................... 22 1 12.00 0.00 12.00 0.00 0.00 .......................................................................TTGCTCCCCTTCAACCAGCTGC................................... 22 1 11.00 0.00 10.00 0.00 1.00 .......................................................................TTGGTCCCTTTCAACCAGCTGT................................... 22 1 11.00 1.00 7.00 3.00 0.00 .......................................................................TTGCTCCCCTTCAACCAGCTGG................................... 22 1 11.00 0.00 11.00 0.00 0.00 .......................................................................TTGGTCCCCTTCAACCAGCG..................................... 20 1 11.00 0.00 9.00 2.00 0.00 .......................................................................TTGGTTCCCTTCAACCAGCTGT................................... 22 1 10.00 2.00 7.00 0.00 1.00 ..........................................................................TTCCCCTTCAACCAGCTGC................................... 19 1 10.00 0.00 10.00 0.00 0.00 .......................................................................TTGGTCCCCTTCAAGCAGCTG.................................... 21 1 10.00 0.00 10.00 0.00 0.00 .......................................................................TGGGTCCCCTTCAACCAGCTGT................................... 22 1 10.00 10.00 0.00 0.00 0.00 .................................AGCTGGTTGACATCGGGTCA........................................................................... 20 1 10.00 0.00 8.00 0.00 2.00 .......................................................................TTGGTCCCCTTCAAxCAGCTGT................................... 21 1 10.00 0.00 9.00 1.00 0.00 .......................................................................TTGGTGCCCTTCAACCAGCTG.................................... 21 1 10.00 0.00 9.00 1.00 0.00 .......................................................................TTGGTCCCCxTCAACCAGCTG.................................... 20 1 10.00 0.00 9.00 1.00 0.00 .......................................................................TTGGTACCCTTCAACCAGCTG.................................... 21 1 10.00 0.00 10.00 0.00 0.00 ........................................................................TCGTCCCCTTCAACCAGCTG.................................... 20 1 10.00 0.00 10.00 0.00 0.00 .......................................................................TTGGTCCCTTTCAACCAGCTG.................................... 21 1 9.00 0.00 9.00 0.00 0.00 .......................................................................TTGGTCCCATTCAACCAGCTG.................................... 21 1 9.00 0.00 9.00 0.00 0.00 .......................................................................TTGGTCCCCTTTAACCAGCTGT................................... 22 1 9.00 0.00 9.00 0.00 0.00 .......................................................................TTGGTCCCCTCCAACCAGCTG.................................... 21 1 9.00 0.00 8.00 1.00 0.00 .......................................................................TTGGTCCCCTTCACCCAGCTGT................................... 22 1 9.00 3.00 5.00 0.00 1.00 .......................................................................ATGGTCCCCTTCAACCAGCTG.................................... 21 1 9.00 0.00 8.00 1.00 0.00 .......................................................................TTGGTTCCCTTCAACCAGCTG.................................... 21 1 9.00 0.00 8.00 1.00 0.00 .......................................................................TTGGTCCCCTTCGACCAGCTGT................................... 22 1 8.00 5.00 3.00 0.00 0.00 .......................................................................TTGGTCCTCTTCAACCAGCTGT................................... 22 1 8.00 0.00 7.00 0.00 1.00

droSec1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	super_18:496867-496993 +	93.79	CATTCGAGAATTTCCACCTGCAACACTGTGTGTAGCTGGTTGACATCGGGTCAGATCTGTTTTTCAAGCATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTTGATGACAACGAAAGCCTAGTGAAC CATTCGAGA-TTTGCACCTGCAACGCTGTGTGTAGCTGGTTGACATCGGGTCAGATCTGTTTTTTAAGCATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTTGCTGACATCGAAAGCCTAGCGAAC Size Hit Count Total Norm V113 Male body V114 Embryo V115 Head .......................................................................TTGGTCCCCTTCAACCAGCTGT................................... 22 1 104944.00 16470.00 12266.00 76208.00 .......................................................................TTGGTCCCCTTCAACCAGCTG.................................... 21 1 6602.00 285.00 167.00 6150.00 .......................................................................TTGGTCCCCTTCAACCAGCT..................................... 20 1 5482.00 201.00 24.00 5257.00 .......................................................................TTGGTCCCCTTCAACCAGCTGTT.................................. 23 1 1434.00 126.00 50.00 1258.00 .................................AGCTGGTTGACATCGGGTCAGAT........................................................................ 23 1 1344.00 109.00 635.00 600.00 .......................................................................TTGGTCCCCTTCAACCAG....................................... 18 1 1019.00 126.00 63.00 830.00 .......................................................................TTGGTCCCCTTCAACCAGCTGA................................... 22 1 562.00 82.00 4.00 476.00 .................................AGCTGGTTGACATCGGGTCAGA......................................................................... 22 1 456.00 14.00 329.00 113.00 .......................................................................TTGGTCCCCTTCAACCAGCTGTA.................................. 23 1 289.00 23.00 12.00 254.00 .......................................................................TTGGTCCCCTTCAACCAGATGT................................... 22 1 240.00 139.00 2.00 99.00 .......................................................................TTGGTCACCTTCAACCAGCTGT................................... 22 1 206.00 3.00 4.00 199.00 .......................................................................TTGGTCCCCTTCAACCAGCTGC................................... 22 1 202.00 37.00 32.00 133.00 .......................................................................TTGGTCCACTTCAACCAGCTGT................................... 22 1 180.00 3.00 3.00 174.00 .......................................................................TTGGTCCCATTCAACCAGCTGT................................... 22 1 166.00 7.00 7.00 152.00 .......................................................................TTGGTCCCCTTCAACCAGCCGT................................... 22 1 150.00 16.00 15.00 119.00 .......................................................................TTGGCCCCCTTCAACCAGCTGT................................... 22 1 147.00 27.00 27.00 93.00 .......................................................................TTGGTCCCCTTCAACCAGCTT.................................... 21 1 147.00 9.00 0.00 138.00 ........................................................................TTGTCCCCTTCAACCAGCTGT................................... 21 1 136.00 10.00 25.00 101.00 .......................................................................TTGGTCCCCTTCAACCGGCTGT................................... 22 1 127.00 24.00 11.00 92.00 .......................................................................TTGGTCCCCTTCAACCAGTTGT................................... 22 1 122.00 79.00 24.00 19.00 .......................................................................TTTGTCCCCTTCAACCAGCTGT................................... 22 1 122.00 15.00 9.00 98.00 .......................................................................TTGGTACCCTTCAACCAGCTGT................................... 22 1 115.00 7.00 1.00 107.00 .......................................................................TTGGTCCCCCTCAACCAGCTGT................................... 22 1 108.00 14.00 21.00 73.00 .......................................................................TTGGTCCTCTTCAACCAGCTGT................................... 22 1 107.00 1.00 60.00 46.00 .......................................................................TTGGTCCCCTTCAACCACCTGT................................... 22 1 105.00 18.00 17.00 70.00 .......................................................................TTGGTCCCCTTCAACCATCTGT................................... 22 1 104.00 18.00 8.00 78.00 .......................................................................TTGTTCCCCTTCAACCAGCTGT................................... 22 1 104.00 16.00 15.00 73.00 .......................................................................TTGGTCCCCTTCAACTAGCTGT................................... 22 1 100.00 9.00 43.00 48.00 ......................................................................CTTGGTCCCCTTCAACCAGCTGT................................... 23 1 99.00 7.00 11.00 81.00 ........................................................................TGGTCCCCTTCAACCAGCTGT................................... 21 1 96.00 8.00 18.00 70.00 .......................................................................TTGGTCCCCTTCAACCCGCTGT................................... 22 1 93.00 13.00 12.00 68.00 .......................................................................CTGGTCCCCTTCAACCAGCTGT................................... 22 1 91.00 17.00 9.00 65.00 .......................................................................TTGGTCCCCTTCAGCCAGCTGT................................... 22 1 90.00 4.00 15.00 71.00 .......................................................................TTGGTCCCCTTCAACCAGGTGT................................... 22 1 89.00 80.00 0.00 9.00 .......................................................................TCGGTCCCCTTCAACCAGCTGT................................... 22 1 86.00 17.00 11.00 58.00 .......................................................................TTGATCCCCTTCAACCAGCTGT................................... 22 1 85.00 8.00 9.00 68.00 .......................................................................TTGGTCCCCTTCGACCAGCTGT................................... 22 1 84.00 10.00 19.00 55.00 .......................................................................TTGGTCCCCTTCAATCAGCTGT................................... 22 1 84.00 11.00 37.00 36.00 .................................AGCTGGTTGACATCGGGTCAG.......................................................................... 21 1 84.00 3.00 19.00 62.00 .......................................................................TTCGTCCCCTTCAACCAGCTGT................................... 22 1 82.00 11.00 4.00 67.00 .......................................................................TTGGTCCCCTTCAACCAGCAGT................................... 22 1 82.00 0.00 0.00 82.00 .......................................................................TTGGTTCCCTTCAACCAGCTGT................................... 22 1 79.00 12.00 33.00 34.00 .......................................................................TTGGTCCCCTCCAACCAGCTGT................................... 22 1 78.00 13.00 12.00 53.00 .......................................................................TTGGTCCCTTTCAACCAGCTGT................................... 22 1 78.00 8.00 36.00 34.00 .......................................................................TTGCTCCCCTTCAACCAGCTGT................................... 22 1 75.00 2.00 13.00 60.00 .......................................................................TTGGTCCCCTTCAACCAGCTGTTT................................. 24 1 74.00 3.00 0.00 71.00 .......................................................................TTGGTCCCCTTTAACCAGCTGT................................... 22 1 72.00 9.00 32.00 31.00 .......................................................................TTGGTCCCCTTCAACCAGCTGTC.................................. 23 1 69.00 10.00 3.00 56.00 .......................................................................TTGGTCCCCATCAACCAGCTGT................................... 22 1 66.00 2.00 3.00 61.00 .......................................................................TTGGTCCCCTTCAACCAACTGT................................... 22 1 62.00 7.00 3.00 52.00 .......................................................................TTGGTCCCCTTCAACCAGCTTT................................... 22 1 59.00 2.00 8.00 49.00 .......................................................................TTGGTCCCCTTCAACAAGCTGT................................... 22 1 55.00 6.00 12.00 37.00 .......................................................................TTAGTCCCCTTCAACCAGCTGT................................... 22 1 54.00 10.00 5.00 39.00 .......................................................................ATGGTCCCCTTCAACCAGCTGT................................... 22 1 54.00 4.00 3.00 47.00 .......................................................................TTGGTCTCCTTCAACCAGCTGT................................... 22 1 52.00 4.00 12.00 36.00 .......................................................................TTGGTCCCCTTAAACCAGCTGT................................... 22 1 50.00 7.00 3.00 40.00 .......................................................................TTGGTCCCCTTCAACCAGCTAT................................... 22 1 47.00 3.00 5.00 39.00 .......................................................................TAGGTCCCCTTCAACCAGCTGT................................... 22 1 47.00 1.00 1.00 45.00 .......................................................................TTGGTCCCCTTCAACCAGCTCT................................... 22 1 42.00 5.00 9.00 28.00 .......................................................................TTGGTCCCCTTCCACCAGCTGT................................... 22 1 42.00 5.00 9.00 28.00 .......................................................................TTGGACCCCTTCAACCAGCTGT................................... 22 1 41.00 6.00 3.00 32.00 .......................................................................TTGGTCCCCTTCAACCAGCTGG................................... 22 1 39.00 9.00 2.00 28.00 .........................................................................GGTCCCCTTCAACCAGCTGT................................... 20 1 37.00 8.00 3.00 26.00 .......................................................................GTGGTCCCCTTCAACCAGCTGT................................... 22 1 36.00 5.00 0.00 31.00 .......................................................................TTGGTxCCCTTCAACCAGCTGT................................... 21 1 33.00 2.00 8.00 23.00 .......................................................................TTGGTCCCCTTCAAACAGCTGT................................... 22 1 31.00 2.00 13.00 16.00 .......................................................................TTGGTCCCCTTCACCCAGCTGT................................... 22 1 31.00 3.00 0.00 28.00 .......................................................................TTGGTCCCCTTCAACCTGCTGT................................... 22 1 30.00 3.00 14.00 13.00 ........................................................................TTGTCCCCTTCAACCAGCTG.................................... 20 1 28.00 0.00 0.00 28.00 .......................................................................TTGGGCCCCTTCAACCAGCTGT................................... 22 1 28.00 6.00 5.00 17.00 ..........................................................................TTCCCCTTCAACCAGCTGT................................... 19 1 25.00 2.00 1.00 22.00 .......................................................................TTGGTCCCCTTCAACCTGT...................................... 19 1 23.00 1.00 5.00 17.00 .......................................................................TTGGTCCCCTACAACCAGCTGT................................... 22 1 23.00 2.00 5.00 16.00 ..........................................................................GTCCCCTTCAACCAGCTGT................................... 19 1 23.00 2.00 3.00 18.00 .......................................................................TTGGTCCCCTTCAACCAGCGGT................................... 22 1 19.00 4.00 3.00 12.00 ...........................................................................TCCCCTTCAACCAGCTGT................................... 18 1 19.00 0.00 2.00 17.00 .......................................................................TTGGTCCCCTTCAACCAGCTA.................................... 21 1 19.00 2.00 0.00 17.00 .......................................................................TTGGTCCCCTTCAACGAGCTGT................................... 22 1 18.00 0.00 4.00 14.00 .......................................................................TTGGTCCCATTCAACCAGCTG.................................... 21 1 17.00 2.00 0.00 15.00 .......................................................................TTGGTACCCTTCAACCAGCTGA................................... 22 1 17.00 0.00 0.00 17.00 .......................................................................TTGGTCCACTTCAACCAGCTG.................................... 21 1 17.00 0.00 0.00 17.00 .......................................................................TTCGTCCCCTTCAACCAGCTG.................................... 21 1 16.00 0.00 0.00 16.00 .................................AGCTGGTTGACATCGGGTCA........................................................................... 20 1 16.00 4.00 0.00 12.00 .......................................................................TTGTTCCCCTTCAACCAGCTG.................................... 21 1 16.00 0.00 1.00 15.00 .......................................................................TTGGTCCCCTTCAACCAGC...................................... 19 1 16.00 0.00 0.00 16.00 .......................................................................TTGGTCCCCTTCAACCAGCTGTGGTC............................... 26 1 16.00 1.00 11.00 4.00 .......................................................................TTTGTCCCCTTCAACCAGCTG.................................... 21 1 16.00 1.00 0.00 15.00 .......................................................................TTGCTCCCCTTCAACCAGCTG.................................... 21 1 15.00 0.00 0.00 15.00 .......................................................................TTGGTCCACTTCAACCAGCT..................................... 20 1 15.00 0.00 0.00 15.00 .......................................................................TTGGTCCCCTTCTACCAGCTGT................................... 22 1 14.00 3.00 8.00 3.00 .......................................................................TTGGTCCCCTTCAACCAGCCG.................................... 21 1 14.00 0.00 0.00 14.00 .......................................................................TTGGTCCCCTTGAACCAGCTGT................................... 22 1 14.00 1.00 0.00 13.00 .......................................................................TTGGTACCCTTCAACCAGCT..................................... 20 1 14.00 0.00 0.00 14.00 .......................................................................TTGGTGCCCTTCAACCAGCTGT................................... 22 1 14.00 0.00 3.00 11.00 .......................................................................TTGGTCCCAATCAACCAGCTGT................................... 22 1 13.00 0.00 0.00 13.00 .......................................................................TTGGTCGCCTTCAACCAGCTGT................................... 22 1 13.00 3.00 0.00 10.00 .......................................................................TTGGTCCCCTTCAACCAGCTGTAT................................. 24 1 13.00 0.00 1.00 12.00 .......................................................................TTGGTCCCATTCAACCAGCT..................................... 20 1 12.00 0.00 0.00 12.00 .......................................................................TTGGTCCCCTTCAACCAGCAG.................................... 21 1 12.00 0.00 0.00 12.00 .......................................................................TTGGTCCCCTTCAACCAGAT..................................... 20 1 12.00 1.00 0.00 11.00 .......................................................................TTGGTCCCCCTCAACCAGCTG.................................... 21 1 12.00 2.00 0.00 10.00

droYak2 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	chr2R:6964793-6964921 +	90.1	CATTCGAGAATTTCCACCTGCAACACTGTGTGTAGCTGGTTGACATCGGGTCAGATCTGTTTTT-CAAGCATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTTGATGACAACGAAAGCCTAGTGAAC TATTCCAGAATTTCCTCCTGCAACGCTGTGTGTAGCTGGTTGACATCGGGTCAGATCTGTTTTTCCAAGCATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTTGATGACAACGAAGTACGAGTAAAC Size Hit Count Total Norm V046 Embryo V052 Head V120 Male body V058 Head M026 Head ........................................................................TTGGTCCCCTTCAACCAGCTGT................................... 22 1 109676.00 1252.00 37982.00 10993.00 52500.00 6949.00 ........................................................................TTGGTCCCCTTCAACCAGCTG.................................... 21 1 7407.00 51.00 1447.00 177.00 1888.00 3844.00 ........................................................................TTGGTCCCCTTCAACCAGCTGC................................... 22 1 1792.00 2.00 108.00 31.00 304.00 1347.00 ........................................................................TTGGTCCCCTTCAACCAGCT..................................... 20 1 1775.00 1.00 660.00 90.00 974.00 50.00 ........................................................................TTGGTCCCCTTCAACCCGCTGT................................... 22 1 1532.00 20.00 599.00 4.00 906.00 3.00 ........................................................................TTGGTCCCCTTCAACCAGCTGTT.................................. 23 1 1311.00 5.00 535.00 62.00 686.00 23.00 ........................................................................TTGGTCCCCTTCAACCAGCTGG................................... 22 1 1305.00 3.00 52.00 4.00 65.00 1181.00 ........................................................................TTGGGCCCCTTCAACCAGCTGT................................... 22 1 808.00 3.00 147.00 19.00 631.00 8.00 ........................................................................TTGGTCCCCTTCACCCAGCTGT................................... 22 1 807.00 2.00 52.00 0.00 753.00 0.00 ........................................................................TTGGTCCCCTTCCACCAGCTGT................................... 22 1 739.00 10.00 275.00 11.00 443.00 0.00 .................................AGCTGGTTGACATCGGGTCAGAT......................................................................... 23 1 525.00 114.00 111.00 21.00 173.00 106.00 ........................................................................TGGGTCCCCTTCAACCAGCTGT................................... 22 1 389.00 2.00 86.00 8.00 293.00 0.00 ........................................................................TTGGACCCCTTCAACCAGCTGT................................... 22 1 339.00 2.00 29.00 11.00 293.00 4.00 ........................................................................TTGGCCCCCTTCAACCAGCTGT................................... 22 1 310.00 3.00 57.00 35.00 206.00 9.00 ........................................................................TTGGTCCCCTTCAACCAG....................................... 18 1 270.00 2.00 94.00 45.00 128.00 1.00 .................................AGCTGGTTGACATCGGGTCAGA.......................................................................... 22 1 260.00 115.00 12.00 4.00 46.00 83.00 ........................................................................TTGGTCCCCTTCTACCAGCTGT................................... 22 1 256.00 4.00 68.00 3.00 181.00 0.00 ........................................................................TTGGTCCCCTTCAACCATCTGT................................... 22 1 211.00 1.00 77.00 15.00 115.00 3.00 ........................................................................TTAGTCCCCTTCAACCAGCTGT................................... 22 1 204.00 0.00 149.00 1.00 49.00 5.00 ........................................................................TTGGTCCCCTTCGACCAGCTGT................................... 22 1 200.00 3.00 71.00 10.00 115.00 1.00 ........................................................................TTGGTCCCCTTCAACCAGCTGTA.................................. 23 1 186.00 1.00 65.00 6.00 95.00 19.00 ........................................................................TTGCTCCCCTTCAACCAGCTGT................................... 22 1 168.00 0.00 51.00 8.00 90.00 19.00 ........................................................................TTGGTCACCTTCAACCAGCTGT................................... 22 1 162.00 3.00 41.00 2.00 107.00 9.00 ........................................................................TTGGTCCCCTTCAACCAGCTTT................................... 22 1 150.00 1.00 57.00 8.00 84.00 0.00 ........................................................................CTGGTCCCCTTCAACCAGCTGT................................... 22 1 150.00 1.00 48.00 5.00 94.00 2.00 ........................................................................TTGGTCCCCTTCAGCCAGCTGT................................... 22 1 147.00 2.00 46.00 5.00 91.00 3.00 ........................................................................TTGGTCCCCCTCAACCAGCTGT................................... 22 1 142.00 2.00 52.00 6.00 81.00 1.00 ........................................................................TTGGTCCCCTTCAACCAGCCGT................................... 22 1 141.00 1.00 53.00 13.00 72.00 2.00 ........................................................................TTGGTCCCCTTCAACAAGCTGT................................... 22 1 135.00 0.00 36.00 3.00 95.00 1.00 ........................................................................TTGGTACCCTTCAACCAGCTGT................................... 22 1 130.00 1.00 36.00 3.00 90.00 0.00 ........................................................................TTGGTCCCCTCCAACCAGCTGT................................... 22 1 130.00 1.00 48.00 10.00 68.00 3.00 .........................................................................TTGTCCCCTTCAACCAGCTGT................................... 21 1 124.00 0.00 4.00 6.00 0.00 114.00 ........................................................................TTGGTCCCCTTCAACCAGCTCT................................... 22 1 122.00 0.00 41.00 4.00 77.00 0.00 ........................................................................TTGGTCCCCTTCAACCACCTGT................................... 22 1 121.00 0.00 8.00 10.00 102.00 1.00 ........................................................................TTTGTCCCCTTCAACCAGCTGT................................... 22 1 121.00 0.00 35.00 5.00 27.00 54.00 ........................................................................TTGGTCCCCGTCAACCAGCTGT................................... 22 1 120.00 2.00 36.00 1.00 81.00 0.00 ........................................................................TTGGTCCCCTGCAACCAGCTGT................................... 22 1 118.00 1.00 29.00 0.00 88.00 0.00 ........................................................................TTGGTCCCCTTCAAACAGCTGT................................... 22 1 113.00 4.00 45.00 3.00 61.00 0.00 ........................................................................TTGATCCCCTTCAACCAGCTGT................................... 22 1 113.00 1.00 42.00 8.00 61.00 1.00 ........................................................................TTGGTCCCCTTCAACCGGCTGT................................... 22 1 111.00 1.00 35.00 8.00 63.00 4.00 ........................................................................TTGGTCCCCTTCAACCAGCTGA................................... 22 1 111.00 1.00 51.00 14.00 42.00 3.00 ........................................................................TTGGTCCCATTCAACCAGCTGT................................... 22 1 110.00 4.00 30.00 5.00 69.00 2.00 ........................................................................TTGGTCCACTTCAACCAGCTGT................................... 22 1 106.00 1.00 34.00 3.00 65.00 3.00 .......................................................................CTTGGTCCCCTTCAACCAGCTGT................................... 23 1 104.00 0.00 28.00 9.00 65.00 2.00 ........................................................................TTGGTCCCCTTCACCCCGCTGT................................... 22 1 100.00 0.00 10.00 0.00 90.00 0.00 ........................................................................TCGGTCCCCTTCAACCAGCTGT................................... 22 1 99.00 3.00 40.00 10.00 46.00 0.00 ........................................................................TTGGTCCCCTTCATCCAGCTGT................................... 22 1 98.00 1.00 7.00 0.00 90.00 0.00 ........................................................................TTGTTCCCCTTCAACCAGCTGT................................... 22 1 96.00 0.00 9.00 8.00 38.00 41.00 ........................................................................TTGGTCCCCTTCAACCTGCTGT................................... 22 1 92.00 2.00 10.00 0.00 78.00 2.00 ........................................................................TTGGTCCCCTTCAACCAGCTGTC.................................. 23 1 90.00 0.00 30.00 7.00 53.00 0.00 ........................................................................TTGGTCCCCTTCAACCAGATGT................................... 22 1 87.00 1.00 34.00 3.00 48.00 1.00 ........................................................................TTGGTCCTCTTCAACCAGCTGT................................... 22 1 83.00 0.00 33.00 3.00 46.00 1.00 ........................................................................ATGGTCCCCTTCAACCAGCTGT................................... 22 1 82.00 1.00 26.00 2.00 52.00 1.00 ........................................................................TTGGTCCCTTTCAACCAGCTGT................................... 22 1 79.00 1.00 29.00 5.00 42.00 2.00 ........................................................................TTGGTCTCCTTCAACCAGCTGT................................... 22 1 78.00 0.00 24.00 4.00 49.00 1.00 .........................................................................TGGTCCCCTTCAACCAGCTGT................................... 21 1 76.00 0.00 23.00 8.00 43.00 2.00 ........................................................................TTGGTCCCCTTCAATCAGCTGT................................... 22 1 75.00 0.00 15.00 6.00 43.00 11.00 ........................................................................TTGGGCCCCTGCAACCAGCTGT................................... 22 1 71.00 0.00 21.00 0.00 50.00 0.00 ........................................................................TTGGTCCCCTTCAACCAGCTAT................................... 22 1 71.00 1.00 48.00 2.00 18.00 2.00 ........................................................................TTGGTCCCCTTCCACCCGCTGT................................... 22 1 70.00 0.00 27.00 0.00 43.00 0.00 ........................................................................TTGGTCCCCTTCAACTAGCTGT................................... 22 1 66.00 1.00 24.00 2.00 36.00 3.00 ........................................................................TTGCACCCCTTCAACCAGCTGT................................... 22 1 62.00 0.00 8.00 0.00 54.00 0.00 ........................................................................TTGGTGCCCTTCAACCAGCTGT................................... 22 1 61.00 0.00 9.00 2.00 50.00 0.00 ........................................................................TTGGTCCCCTTCAACCAACTGT................................... 22 1 60.00 2.00 25.00 8.00 22.00 3.00 ........................................................................TTCGTCCCCTTCAACCAGCTGT................................... 22 1 59.00 0.00 10.00 7.00 19.00 23.00 ........................................................................TTGGTCCCCTTCAACCCGCTG.................................... 21 1 56.00 0.00 25.00 0.00 27.00 4.00 ........................................................................TTGGTCCCCTTCAACCAGCGGT................................... 22 1 56.00 0.00 13.00 2.00 39.00 2.00 ........................................................................TGGGTCCCCTTCTACCAGCTGT................................... 22 1 53.00 0.00 16.00 0.00 37.00 0.00 ........................................................................TTGGTTCCCTTCAACCAGCTGT................................... 22 1 52.00 1.00 18.00 5.00 25.00 3.00 ........................................................................TTGGTCCCCTTCAACCAGCTGTTT................................. 24 1 52.00 0.00 21.00 2.00 29.00 0.00 .................................AGCTGGTTGACATCGGGTCAG........................................................................... 21 1 52.00 16.00 13.00 0.00 15.00 8.00 ........................................................................TTGGTCCCCTTCCCCCAGCTGT................................... 22 1 49.00 0.00 2.00 0.00 47.00 0.00 ........................................................................TTGGGCCCCTTCCACCAGCTGT................................... 22 1 45.00 0.00 9.00 0.00 36.00 0.00 ........................................................................TTGGTCCCCTTCAACCCGCT..................................... 20 1 44.00 0.00 14.00 0.00 30.00 0.00 ........................................................................TTGGTCCCCTTAAACCAGCTGT................................... 22 1 42.00 0.00 16.00 3.00 22.00 1.00 ........................................................................TTGGTCCCCTTCAACCAGCTT.................................... 21 1 42.00 0.00 17.00 1.00 24.00 0.00 ........................................................................TTGGTCCCCTTTAACCAGCTGT................................... 22 1 41.00 0.00 20.00 5.00 15.00 1.00 ........................................................................TTGGTCCCCTTCAACCAGCGG.................................... 21 1 40.00 0.00 0.00 0.00 4.00 36.00 ........................................................................TTGGTCCGCTTCAACCAGCTGT................................... 22 1 40.00 1.00 10.00 0.00 27.00 2.00 ........................................................................TTGGTCCCCTTCAACCAGC...................................... 19 1 39.00 0.00 2.00 0.00 4.00 33.00 ........................................................................TTGGTCCCCTTCAACCCGCTGC................................... 22 1 39.00 0.00 15.00 0.00 21.00 3.00 ........................................................................TTGGTCCCCTTCCACCAGCTG.................................... 21 1 38.00 0.00 15.00 0.00 23.00 0.00 ........................................................................GTGGTCCCCTTCAACCAGCTGT................................... 22 1 37.00 0.00 10.00 3.00 24.00 0.00 ........................................................................TTGGTCCCCTTCTACCTGCTGT................................... 22 1 37.00 0.00 4.00 0.00 33.00 0.00 ........................................................................TTGGTCCCCTTCAACCAGTTGT................................... 22 1 37.00 1.00 7.00 3.00 24.00 2.00 ........................................................................TTGGGCACCTTCAACCAGCTGT................................... 22 1 36.00 0.00 6.00 0.00 30.00 0.00 ........................................................................TGGGTCCCCTGCAACCAGCTGT................................... 22 1 35.00 0.00 13.00 0.00 22.00 0.00 ........................................................................TGGGACCCCTTCAACCAGCTGT................................... 22 1 33.00 0.00 3.00 0.00 30.00 0.00 ........................................................................TTGGGCCCCTTCAACCAGCTG.................................... 21 1 32.00 0.00 3.00 2.00 22.00 5.00 ........................................................................TTGGTCCCCTTCACCCAGCTG.................................... 21 1 31.00 0.00 1.00 0.00 30.00 0.00 ........................................................................TTGGACACCTTCAACCAGCTGT................................... 22 1 30.00 0.00 9.00 0.00 21.00 0.00 ........................................................................TTGGGCCCCTTCAACCAGCTGC................................... 22 1 30.00 0.00 7.00 0.00 22.00 1.00 ........................................................................TAGGTCCCCTTCAACCAGCTGT................................... 22 1 30.00 0.00 10.00 2.00 17.00 1.00 ..........................................................................GGTCCCCTTCAACCAGCTGT................................... 20 1 29.00 1.00 4.00 5.00 19.00 0.00 ........................................................................TTGGGCCCCGTCAACCAGCTGT................................... 22 1 29.00 0.00 7.00 0.00 22.00 0.00 ........................................................................TTGCTCCCCTTCTACCAGCTGT................................... 22 1 29.00 0.00 8.00 0.00 21.00 0.00 ........................................................................TGGGTCCCCGTCAACCAGCTGT................................... 22 1 27.00 0.00 3.00 0.00 24.00 0.00 ........................................................................TTGGCCCCCTTCAACCAGCTGC................................... 22 1 26.00 0.00 3.00 0.00 21.00 2.00 ........................................................................TTGGGCCCCTTCAACCCGCTGT................................... 22 1 26.00 0.00 6.00 0.00 20.00 0.00 ........................................................................TTGGTCGCCTTCAACCAGCTGT................................... 22 1 26.00 0.00 6.00 0.00 17.00 3.00 ........................................................................ATGGGCCCCTTCAACCAGCTGT................................... 22 1 25.00 0.00 4.00 0.00 21.00 0.00

droEre2 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	scaffold_4845:3836606-3836724 -	79.75	CATTCGAGAATTTCCACCTGCAACACTGTGTGTAGCTGGTTGACATCGGGTCAGATCTGTTTTTCAAGCATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTTGATGACAACGAAAGCCTAGTGAAC ---------ATTTCCT-CTGCAACGCTGTGTGTAGCTGGTTGACATCGGGTCAGATCTGTTTTCCTAGCATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTTGATGCCAACTAAATTCGAGTGAAC Size Hit Count Total Norm V040 Embryo V060 Head V047 Embryo V108 Head .......................................................................TTGGTCCCCTTCAACCAGCTGT................................... 22 1 124317.00 1543.00 26894.00 0.00 95880.00 .......................................................................TTGGTCCCCTTCAACCAGCTG.................................... 21 1 8113.00 82.00 1357.00 0.00 6674.00 .......................................................................TTGGTCCCCTTCAACCAGCT..................................... 20 1 3666.00 11.00 400.00 0.00 3255.00 .......................................................................TTGGTCCCATTCAACCAGCTGT................................... 22 1 2498.00 1.00 15.00 0.00 2482.00 .......................................................................TTGGTCCACTTCAACCAGCTGT................................... 22 1 2137.00 1.00 24.00 0.00 2112.00 .................................AGCTGGTTGACATCGGGTCAGAT........................................................................ 23 1 1485.00 88.00 92.00 0.00 1305.00 .......................................................................TTGGTCCCCTTCAACCAGCTGTT.................................. 23 1 1268.00 7.00 312.00 0.00 949.00 .......................................................................TTGGTCCCCTTCAACCAG....................................... 18 1 1265.00 4.00 149.00 0.00 1112.00 .......................................................................TTTGTCCCCTTCAACCAGCTGT................................... 22 1 1240.00 7.00 16.00 0.00 1217.00 .......................................................................TTGGTCACCTTCAACCAGCTGT................................... 22 1 998.00 1.00 29.00 0.00 968.00 .......................................................................TTGGTACCCTTCAACCAGCTGT................................... 22 1 717.00 1.00 24.00 0.00 692.00 .......................................................................TTGGTCCCCTTCAACAAGCTGT................................... 22 1 618.00 2.00 47.00 0.00 569.00 .......................................................................TTGGTCCCCTTCAACCAGATGT................................... 22 1 569.00 0.00 19.00 0.00 550.00 .................................AGCTGGTTGACATCGGGTCAGA......................................................................... 22 1 561.00 76.00 32.00 0.00 453.00 .......................................................................TTGGTCCCCTTCAACCATCTGT................................... 22 1 552.00 13.00 58.00 0.00 481.00 .......................................................................TTGGTCCCCTTCAACCAGCTGTA.................................. 23 1 498.00 2.00 79.00 0.00 417.00 .......................................................................TTGGTCCCCTTAAACCAGCTGT................................... 22 1 390.00 2.00 5.00 0.00 383.00 .......................................................................TTGGTCCCCTTCAACCCGCTGT................................... 22 1 364.00 24.00 256.00 0.00 84.00 .......................................................................TTGGTCCCCTTCAACCAGCTGC................................... 22 1 322.00 4.00 99.00 0.00 219.00 .......................................................................TTAGTCCCCTTCAACCAGCTGT................................... 22 1 290.00 2.00 101.00 0.00 187.00 .......................................................................TTGTTCCCCTTCAACCAGCTGT................................... 22 1 271.00 6.00 11.00 0.00 254.00 .......................................................................TTGGTCCCCTTCACCCAGCTGT................................... 22 1 270.00 3.00 207.00 0.00 60.00 .......................................................................TTGGCCCCCTTCAACCAGCTGT................................... 22 1 265.00 1.00 57.00 0.00 207.00 .......................................................................TTGGTCCCCTTCAACCAGCTTT................................... 22 1 208.00 14.00 27.00 0.00 167.00 .......................................................................TTGGTCCCCTTCAAACAGCTGT................................... 22 1 195.00 2.00 18.00 0.00 175.00 .......................................................................TTGGTCCCCCTCAACCAGCTGT................................... 22 1 165.00 2.00 26.00 0.00 137.00 .......................................................................TTGGTCCCATTCAACCAGCTG.................................... 21 1 163.00 1.00 2.00 0.00 160.00 .......................................................................TTGGTCTCCTTCAACCAGCTGT................................... 22 1 158.00 5.00 69.00 0.00 84.00 .......................................................................TTCGTCCCCTTCAACCAGCTGT................................... 22 1 155.00 1.00 8.00 0.00 146.00 .......................................................................TTGGTCCCCTTCAACCACCTGT................................... 22 1 154.00 6.00 24.00 0.00 124.00 .......................................................................TTGGTCCCCTTCAACCAGCCGT................................... 22 1 149.00 3.00 33.00 0.00 113.00 .......................................................................TTGGTCCCCTTCAACTAGCTGT................................... 22 1 147.00 1.00 39.00 0.00 107.00 ........................................................................TTGTCCCCTTCAACCAGCTGT................................... 21 1 146.00 0.00 1.00 0.00 145.00 ......................................................................CTTGGTCCCCTTCAACCAGCTGT................................... 23 1 141.00 3.00 31.00 0.00 107.00 .......................................................................TTGGTCCCCTTCCACCAGCTGT................................... 22 1 141.00 7.00 102.00 0.00 32.00 .......................................................................TTGGTCCTCTTCAACCAGCTGT................................... 22 1 137.00 3.00 61.00 0.00 73.00 ........................................................................TGGTCCCCTTCAACCAGCTGT................................... 21 1 135.00 1.00 27.00 0.00 107.00 .......................................................................TTGATCCCCTTCAACCAGCTGT................................... 22 1 135.00 1.00 27.00 0.00 107.00 .......................................................................TTGGTCCCCTTCAACCAGCTGTC.................................. 23 1 132.00 0.00 23.00 0.00 109.00 .......................................................................TTGGTCCCCTTCAACCAGCTGA................................... 22 1 128.00 1.00 26.00 0.00 101.00 .......................................................................TTGGTCCACTTCAACCAGCTG.................................... 21 1 127.00 0.00 2.00 0.00 125.00 .......................................................................TTGGTCCCTTTCAACCAGCTGT................................... 22 1 126.00 0.00 52.00 0.00 74.00 .......................................................................TTGGTCCCCTTCGACCAGCTGT................................... 22 1 120.00 2.00 45.00 0.00 73.00 .......................................................................CTGGTCCCCTTCAACCAGCTGT................................... 22 1 120.00 3.00 17.00 0.00 100.00 .......................................................................TTGGTCCCCTCCAACCAGCTGT................................... 22 1 119.00 1.00 22.00 0.00 96.00 .......................................................................TTGGGCCCCTTCAACCAGCTGT................................... 22 1 119.00 14.00 80.00 0.00 25.00 .......................................................................TTGCTCCCCTTCAACCAGCTGT................................... 22 1 118.00 6.00 27.00 0.00 85.00 .......................................................................TCGGTCCCCTTCAACCAGCTGT................................... 22 1 113.00 2.00 30.00 0.00 81.00 .......................................................................TTGGTCCCCTTCAACCGGCTGT................................... 22 1 105.00 0.00 19.00 0.00 86.00 .......................................................................TTGGACCCCTTCAACCAGCTGT................................... 22 1 100.00 5.00 57.00 0.00 38.00 .......................................................................TTTGTCCCCTTCAACCAGCTG.................................... 21 1 99.00 1.00 0.00 0.00 98.00 .......................................................................TTGGTCCCATTCAACCAGCT..................................... 20 1 97.00 0.00 1.00 0.00 96.00 .......................................................................TTGGTCCCCTTCAGCCAGCTGT................................... 22 1 90.00 3.00 27.00 0.00 60.00 .......................................................................TTGGTCCCCTTCAACCAGCTCT................................... 22 1 86.00 9.00 26.00 0.00 51.00 .......................................................................TTGGTCCCCTTCAACCAACTGT................................... 22 1 84.00 2.00 22.00 0.00 60.00 .................................AGCTGGTTGACATCGGGTCAG.......................................................................... 21 1 82.00 2.00 4.00 0.00 76.00 .......................................................................TGGGTCCCCTTCAACCAGCTGT................................... 22 1 81.00 2.00 70.00 0.00 9.00 .......................................................................TTGGTCCCCTTCAACCAGCTAT................................... 22 1 79.00 5.00 25.00 0.00 49.00 .......................................................................TTGGTTCCCTTCAACCAGCTGT................................... 22 1 79.00 0.00 19.00 0.00 60.00 .......................................................................TTGGTCCACTTCAACCAGCT..................................... 20 1 77.00 0.00 1.00 0.00 76.00 .......................................................................TTGGTCCCCTTCAATCAGCTGT................................... 22 1 72.00 2.00 12.00 0.00 58.00 .......................................................................TTGGTCACCTTCAACCAGCTG.................................... 21 1 71.00 0.00 0.00 0.00 71.00 .......................................................................TTGGTCCCCTTCAACCAGCTGTTT................................. 24 1 70.00 0.00 10.00 0.00 60.00 .......................................................................TTGGTCCCCTTTAACCAGCTGT................................... 22 1 63.00 1.00 11.00 0.00 51.00 .......................................................................TTGGTCCCCTTCAACCAGCTT.................................... 21 1 62.00 3.00 9.00 0.00 50.00 .......................................................................TTGGTCCCCTTCAACCTGCTGT................................... 22 1 62.00 1.00 18.00 0.00 43.00 .......................................................................TTGGTCCCCTTCAACCAGCTGG................................... 22 1 61.00 5.00 14.00 0.00 42.00 .......................................................................TTGGTCCCCTTCAACCAGTTGT................................... 22 1 59.00 0.00 17.00 0.00 42.00 .........................................................................GGTCCCCTTCAACCAGCTGT................................... 20 1 52.00 1.00 3.00 0.00 48.00 .......................................................................TTGGTACCCTTCAACCAGCTG.................................... 21 1 51.00 0.00 1.00 0.00 50.00 .......................................................................TTGGTCCCCTTCTACCAGCTGT................................... 22 1 50.00 2.00 37.00 0.00 11.00 .......................................................................TTGGTCCCCTTCAACCATCTG.................................... 21 1 50.00 1.00 2.00 0.00 47.00 .......................................................................TTGGTCCCCTTCAACCATCT..................................... 20 1 49.00 0.00 1.00 0.00 48.00 .......................................................................TTGGTCCCCTTCAACCAGATG.................................... 21 1 46.00 0.00 0.00 0.00 46.00 .......................................................................TTGGTCCCCTTCAAxCAGCTGT................................... 21 1 45.00 1.00 0.00 0.00 44.00 .......................................................................TTGGTxCCCTTCAACCAGCTGT................................... 21 1 43.00 0.00 2.00 0.00 41.00 .......................................................................TTTGTCCCCTTCAACCAGCT..................................... 20 1 42.00 0.00 0.00 0.00 42.00 .......................................................................GTGGTCCCCTTCAACCAGCTGT................................... 22 1 39.00 2.00 4.00 0.00 33.00 .......................................................................TTGTTCCCCTTCAACCAGCTG.................................... 21 1 39.00 1.00 4.00 0.00 34.00 .......................................................................TTGGTCACCTTCAACCAGCT..................................... 20 1 36.00 0.00 0.00 0.00 36.00 ..........................................................................GTCCCCTTCAACCAGCTGT................................... 19 1 34.00 0.00 5.00 0.00 29.00 .......................................................................TTGGTCCACTTCAACAAGCTGT................................... 22 1 33.00 0.00 1.00 0.00 32.00 .......................................................................TTGGTACCATTCAACCAGCTGT................................... 22 1 33.00 0.00 0.00 0.00 33.00 .......................................................................TTGGTCCCATTCAACCAG....................................... 18 1 32.00 0.00 2.00 0.00 30.00 .......................................................................TTGGTCACATTCAACCAGCTGT................................... 22 1 32.00 0.00 0.00 0.00 32.00 .......................................................................TTGGTCCCATTCAACAAGCTGT................................... 22 1 31.00 2.00 1.00 0.00 28.00 .......................................................................TTGGTCCCCATCAACCAGCTGT................................... 22 1 30.00 0.00 7.00 0.00 23.00 .......................................................................TTGGTCCCATTCAACCAGCTGTT.................................. 23 1 30.00 0.00 0.00 0.00 30.00 .......................................................................TTGGTCCCATTCAACCAGATGT................................... 22 1 30.00 0.00 1.00 0.00 29.00 .......................................................................ATGGTCCCCTTCAACCAGCTGT................................... 22 1 30.00 1.00 8.00 0.00 21.00 .......................................................................TTGGTCCCCTTCAACGAGCTGT................................... 22 1 30.00 0.00 3.00 0.00 27.00 ........................................................................TTGTCCCCTTCAACCAGCTG.................................... 20 1 30.00 0.00 0.00 0.00 30.00 .......................................................................TTGGTACCCTTCAACCAGCT..................................... 20 1 29.00 0.00 1.00 0.00 28.00 .......................................................................TTGGTCCCCTTCAACCAGCTGTAT................................. 24 1 29.00 0.00 7.00 0.00 22.00 .......................................................................TTGGTCCCCTTCAACCAGCTGTGGTC............................... 26 1 29.00 0.00 0.00 0.00 29.00 .......................................................................TTGGTGCCCTTCAACCAGCTGT................................... 22 1 27.00 1.00 8.00 0.00 18.00 .......................................................................TTGGTCCCCTTAAACCAGCTG.................................... 21 1 27.00 0.00 0.00 0.00 27.00 .......................................................................TTGGTCCCCTTCAACAAGCTG.................................... 21 1 26.00 0.00 0.00 0.00 26.00 .......................................................................TTGGTCACCTTCAACAAGCTGT................................... 22 1 26.00 1.00 2.00 0.00 23.00 .......................................................................TTGGTCCCCTTCAAGCAGCTGT................................... 22 1 25.00 0.00 6.00 0.00 19.00 .......................................................................TTGGTCCCCGTCAACCAGCTGT................................... 22 1 25.00 4.00 16.00 0.00 5.00

droFic1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	scf7180000453842:123951-124080 +	87.98	CATTCGAGAATTTCCACCTGCAACACTGTGTGTAGCTGGTTGACATCGGGTCAGATCTGTTTTT--CAAGCATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTTGATGACAACGAAAGCCTAGTGAAC TATTCAAAAATTATTATCTGCAACGCTGTGTGTAGCTGGTTGACATCGGGTCAGATCTGTTTTTTCCAAGCATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTTGATGACAACGAAACCCGAGTGAAC Size Hit Count Total Norm

droEug1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	scf7180000409767:678694-678826 -	78.35	CATTCGAGA--ATTTCCACCTGCAACACTGTGTGTAGCTGGTTGACATCGGGTCAGATCT---GTTTTTCAAGCATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTTGATGACAACGAAAGCCTAGTGAAC TTTTCCAGAAAATGATTATCTGCAACGCTGTGTGTAGCTGGTTGACATCGGGTCAGATCTACTTTTTTCCAAGCATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTCGTTGACAACGAATTTCGAGTGAAA Size Hit Count Total Norm

droBia1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	scf7180000302422:7475085-7475212 -	83.94	CATTCGAGAATTTCCACCTGCAACACTGTGTGTAGCTGGTTGACATCGGGTCAGATCTG-TTTTTCAAGCATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTTGATGACAACGAAAGCCTAGTGAAC TGTTT-AAAATCATTACCTGCAACGCTGTGTGTAGCTGGTTGACATCGGGTCAGATCTACTTTTTCAAGCATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTTGCTGACAGCGGAGTACGAGTGAAC Size Hit Count Total Norm

droTak1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	scf7180000415104:189967-190095 -	85.56	CATTCGAGAATTTCCACCTGCAACACTGTGTGTAGCTGGTTGACATCGGGTCAGATCTG-TTTTTCAAGCATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTTGATGACAACGAAAGCCTAGTGAAC TATTTAAAAATGATTACCTGCAACGCTGTGTGTAGCTGGTTGACATCGGGTCAGATCTACTTTTTCAAGCATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTTGATGACAACTCGACACTAGTGAAC Size Hit Count Total Norm

droEle1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
2	scf7180000491186:607671-607801 +	82.97	CATTCGAG-AATTTCCACCTGCAACACTGTGTGTAGCTGGTTGACATCGGGTCAGATCTGTTTTT-C-AAGCATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTTGATGACAACGAAAGCCTAGTGAAC TATTAAACAAATTATTACCTGCAACGCTGTGTGTAGCTGGTTGACATCGGGTCAGATCTATTTTTTCAAAGTATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTTGGTGACAACGAAATACGAGTGAAC Size Hit Count Total Norm

droRho1 - 2 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
4	scf7180000777920:26469-26599 +	83.7	CATTCGAG-AATTTCCACCTGCAACACTGTGTGTAGCTGGTTGACATCGGGTCAGATCTGTTTTT--CAAGCATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTTGATGACAACGAAAGCCTAGTGAAC TATTAAACAAATTATTATCTGCAACGCTGTGTGTAGCTGGTTGACATCGGGTCAGATCTATTTTTTCCAAGCATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTTGGTGACAACGAAATACGAGTGAAC Size Hit Count Total Norm
2	scf7180000772381:1070-1134 +	42.86	CATTCGAG-AATTTCCACCTGCAACACTGTGTGTAGCTGGTTGACATCGGGTCAGATCTGTTTTTCAAGCATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTTGATGACAACGAAAGCCTAGTGAAC TATTAAACAAATTATTATCTGCAACGCTGTGTGTAGCTGGTTGACATCGGGTCAGATCTATTTTT---------------------------------------------------------------- Size Hit Count Total Norm

droKik1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	scf7180000302408:807302-807430 +	82.65	CATTCGAGAATTTCCACCTGCAACACTGTGTGTAGCTGGTTGACATCGGGTCAGATCTGTT--TTTCAAGCATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTTGATGACAACGAAAGCCTAGTGAAC TATTTAAAATTTATTATCTGCAACGCTGTATGTAGCTGGTTGACATCGGGTCAGATCTACTGTTTCCAAGCATTTGGTCCCCTTCAACCAGCTGTAGC-AGTGGTTGATGACAACGAAATACGAGTGAAC Size Hit Count Total Norm

droAna3 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	scaffold_12916:7117508-7117634 +	85.27	CATTCGAGAATTTCCACCTGCAACACTGTGTGTAGCTGGTTGACATCGGGTCAGATCTGT-TTTTCAAGCATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTTGATGACAACGAAAGCCTAGTGAAC --TTCGTGAATGATTATCTGCAACGCTGTATGTAGCTGGTTGACATCGGGTCAGATCTATCTTTTCAAGCATTTGGTCCCCTTCAACCAGCTGTAGC-AGTGGTTGATGACAACAAAGTACAAGTGAAA Size Hit Count Total Norm V105 Male body V106 Head V055 Unknown V039 Embryo ........................................................................TTGGTCCCCTTCAACCAGCTGT................................... 22 1 69497.00 10308.00 21623.00 37295.00 271.00 ........................................................................TTGGTCCCCTTCAACCAGCT..................................... 20 1 4900.00 260.00 2053.00 2586.00 1.00 ........................................................................TTGGTCCCCTTCAACCAGCTG.................................... 21 1 4218.00 203.00 1890.00 2103.00 22.00 ........................................................................TTGGTCCCCTTCAACCAGCTGTT.................................. 23 1 1638.00 84.00 717.00 836.00 1.00 .................................AGCTGGTTGACATCGGGTCAGAT......................................................................... 23 1 1397.00 24.00 1293.00 63.00 17.00 ........................................................................TTGGGCCCCTTCAACCAGCTGT................................... 22 1 738.00 26.00 7.00 703.00 2.00 ........................................................................TTGGTCCCCTTCAACCAG....................................... 18 1 483.00 85.00 236.00 162.00 0.00 ........................................................................TTGGACCCCTTCAACCAGCTGT................................... 22 1 466.00 11.00 14.00 440.00 1.00 ........................................................................TTGGTCCCCTTCAACCATCTGT................................... 22 1 449.00 91.00 293.00 63.00 2.00 ........................................................................TTTGTCCCCTTCAACCAGCTGT................................... 22 1 447.00 14.00 391.00 40.00 2.00 ........................................................................TTGGTCCCCTTCAACCAGATGT................................... 22 1 356.00 78.00 224.00 54.00 0.00 .................................AGCTGGTTGACATCGGGTCAGA.......................................................................... 22 1 350.00 3.00 322.00 8.00 17.00 ........................................................................TTGGTCCCCTTCAACCAGCTGC................................... 22 1 345.00 11.00 26.00 307.00 1.00 ........................................................................TTGGTCCCATTCAACCAGCTGT................................... 22 1 336.00 33.00 166.00 136.00 1.00 ........................................................................TTGGCCCCCTTCAACCAGCTGT................................... 22 1 318.00 15.00 31.00 271.00 1.00 ........................................................................TTGGTCCACTTCAACCAGCTGT................................... 22 1 313.00 34.00 142.00 137.00 0.00 ........................................................................TGGGTCCCCTTCAACCAGCTGT................................... 22 1 301.00 29.00 2.00 269.00 1.00 ........................................................................TTGGTCCCCTTCAACCAGCTAT................................... 22 1 288.00 121.00 135.00 32.00 0.00 ........................................................................TTGGTCACCTTCAACCAGCTGT................................... 22 1 264.00 28.00 79.00 157.00 0.00 ........................................................................TTGGTCCCCTTCAACCAGCTCT................................... 22 1 211.00 72.00 66.00 72.00 1.00 ........................................................................TTGGTACCCTTCAACCAGCTGT................................... 22 1 203.00 16.00 49.00 137.00 1.00 ........................................................................TTGGTCCCCTTCAACCCGCTGT................................... 22 1 179.00 3.00 4.00 168.00 4.00 ........................................................................TTGGTCCCCTTCAACAAGCTGT................................... 22 1 175.00 26.00 35.00 114.00 0.00 ........................................................................TTGGTCCCCTTCAACCAGCTGA................................... 22 1 168.00 9.00 83.00 76.00 0.00 ........................................................................TTGGTCCCCTTCACCCAGCTGT................................... 22 1 145.00 13.00 7.00 122.00 3.00 ........................................................................TTGGTCCCCTTCAACCAGCTGTA.................................. 23 1 132.00 6.00 50.00 75.00 1.00 ........................................................................TTGGTCCCCTTCAACCAGCTTT................................... 22 1 130.00 36.00 54.00 37.00 3.00 ........................................................................TTGGTCCCCTTCAACCAGCTGTTT................................. 24 1 120.00 3.00 52.00 65.00 0.00 ........................................................................TTGGTCCCCTTCAACCACCTGT................................... 22 1 116.00 12.00 15.00 89.00 0.00 ........................................................................TTGGTCCCCTTCAACTAGCTGT................................... 22 1 115.00 29.00 41.00 45.00 0.00 ........................................................................TTGGTCCCCTTAAACCAGCTGT................................... 22 1 114.00 47.00 40.00 27.00 0.00 .................................AGCTGGTTGACATCGGGTCAG........................................................................... 21 1 109.00 2.00 102.00 5.00 0.00 ........................................................................GTGGTCCCCTTCAACCAGCTGT................................... 22 1 109.00 5.00 4.00 100.00 0.00 ........................................................................TTGCTCCCCTTCAACCAGCTGT................................... 22 1 104.00 13.00 10.00 81.00 0.00 ........................................................................TTGGTCCCCTTCCACCAGCTGT................................... 22 1 103.00 19.00 2.00 79.00 3.00 ........................................................................TTGGTCCCCTTCAACCAGCTT.................................... 21 1 97.00 5.00 43.00 49.00 0.00 ........................................................................TTGGTCCCCTGCAACCAGCTGT................................... 22 1 96.00 17.00 0.00 79.00 0.00 ........................................................................TTGGTCCTCTTCAACCAGCTGT................................... 22 1 96.00 8.00 28.00 60.00 0.00 ........................................................................TCGGTCCCCTTCAACCAGCTGT................................... 22 1 95.00 12.00 14.00 69.00 0.00 ........................................................................TTGGTCCCCTTCAACCAGCTGG................................... 22 1 92.00 1.00 11.00 79.00 1.00 ........................................................................TTGGTCCCCTCCAACCAGCTGT................................... 22 1 91.00 17.00 12.00 62.00 0.00 ........................................................................TTGGTCCCCCTCAACCAGCTGT................................... 22 1 91.00 7.00 21.00 63.00 0.00 ........................................................................CTGGTCCCCTTCAACCAGCTGT................................... 22 1 89.00 13.00 21.00 54.00 1.00 ........................................................................TTAGTCCCCTTCAACCAGCTGT................................... 22 1 86.00 6.00 13.00 67.00 0.00 ........................................................................TTGGTCCCCTTCGACCAGCTGT................................... 22 1 85.00 34.00 11.00 39.00 1.00 ........................................................................TTGGTCCCCTTCAGCCAGCTGT................................... 22 1 83.00 16.00 14.00 53.00 0.00 ........................................................................TTGGTCCCCTTCTACCAGCTGT................................... 22 1 82.00 20.00 7.00 55.00 0.00 ........................................................................TTGATCCCCTTCAACCAGCTGT................................... 22 1 77.00 12.00 13.00 52.00 0.00 ........................................................................ATGGTCCCCTTCAACCAGCTGT................................... 22 1 76.00 5.00 3.00 68.00 0.00 ........................................................................TTGGTCTCCTTCAACCAGCTGT................................... 22 1 75.00 8.00 25.00 42.00 0.00 ........................................................................TTGGTCCCCGTCAACCAGCTGT................................... 22 1 74.00 1.00 2.00 71.00 0.00 ........................................................................TTGGTCCCCTTCAACCAGCCGT................................... 22 1 74.00 3.00 16.00 53.00 2.00 ........................................................................TTGGTCCCTTTCAACCAGCTGT................................... 22 1 73.00 7.00 9.00 56.00 1.00 ........................................................................TTGGTCCCCTTCAACCGGCTGT................................... 22 1 72.00 4.00 22.00 46.00 0.00 ........................................................................TTGTTCCCCTTCAACCAGCTGT................................... 22 1 72.00 18.00 24.00 29.00 1.00 ........................................................................TAGGTCCCCTTCAACCAGCTGT................................... 22 1 70.00 18.00 2.00 50.00 0.00 ........................................................................TTGGTCCCCTTCAATCAGCTGT................................... 22 1 62.00 9.00 27.00 25.00 1.00 ........................................................................TGGGACCCCTTCAACCAGCTGT................................... 22 1 61.00 0.00 0.00 61.00 0.00 ........................................................................TTGGGCCCCTTCAACCAGCT..................................... 20 1 60.00 0.00 0.00 60.00 0.00 ........................................................................TTGGTCCCCTTTAACCAGCTGT................................... 22 1 58.00 28.00 9.00 21.00 0.00 ........................................................................TTGGTGCCCTTCAACCAGCTGT................................... 22 1 55.00 1.00 3.00 51.00 0.00 ........................................................................TTCGTCCCCTTCAACCAGCTGT................................... 22 1 54.00 8.00 21.00 24.00 1.00 ........................................................................TTGGTCCCCTTCAACCTGCTGT................................... 22 1 52.00 4.00 12.00 36.00 0.00 ........................................................................TTGGTTCCCTTCAACCAGCTGT................................... 22 1 51.00 7.00 17.00 27.00 0.00 ........................................................................TTGGTCCCCTTCATCCAGCTGT................................... 22 1 49.00 9.00 1.00 39.00 0.00 ........................................................................TTTGTCCCCTTCAACCAGCT..................................... 20 1 48.00 1.00 45.00 2.00 0.00 ........................................................................TTGGTCCCCTTGAACCAGCTGT................................... 22 1 44.00 38.00 0.00 6.00 0.00 ........................................................................TTGGTCCCCTACAACCAGCTGT................................... 22 1 44.00 26.00 2.00 16.00 0.00 ........................................................................TTGGTCCCCTTCAACCATCT..................................... 20 1 43.00 2.00 34.00 7.00 0.00 ........................................................................TTGGTCCCCTTCAAACAGCTGT................................... 22 1 42.00 2.00 10.00 29.00 1.00 ........................................................................TTGGGCCCCTTCAACCAGCTG.................................... 21 1 42.00 0.00 0.00 42.00 0.00 ........................................................................TTGGTCCCCTTCAACCAGCGGT................................... 22 1 42.00 0.00 0.00 42.00 0.00 .......................................................................CTTGGTCCCCTTCAACCAGCTGT................................... 23 1 40.00 2.00 11.00 27.00 0.00 ........................................................................TTGGTCCCCTTCAACCAGCTA.................................... 21 1 37.00 3.00 26.00 8.00 0.00 .................................AGCTGGTTGACATCGGGTCA............................................................................ 20 1 36.00 1.00 33.00 2.00 0.00 ........................................................................TTTGTCCCCTTCAACCAGCTG.................................... 21 1 36.00 0.00 36.00 0.00 0.00 .........................................................................TTGTCCCCTTCAACCAGCTGT................................... 21 1 36.00 14.00 16.00 6.00 0.00 ........................................................................TGGGGCCCCTTCAACCAGCTGT................................... 22 1 35.00 0.00 0.00 35.00 0.00 ........................................................................TTGGACCCCTTCAACCAGCT..................................... 20 1 35.00 0.00 0.00 35.00 0.00 ........................................................................TTGGACCCCTTCAACCAGCTG.................................... 21 1 35.00 0.00 1.00 34.00 0.00 ........................................................................TTGGCCCCCTTCAACCAGCTGC................................... 22 1 35.00 0.00 0.00 35.00 0.00 ........................................................................TTGGTCCCCTTCAACCAGCTGTTG................................. 24 1 34.00 1.00 29.00 4.00 0.00 ........................................................................TTGGTCCCCTTCAACGAGCTGT................................... 22 1 34.00 18.00 8.00 8.00 0.00 ........................................................................TTGGTCCCCTTCAACCAGCTGTC.................................. 23 1 33.00 3.00 7.00 23.00 0.00 ........................................................................TTGGTCCCCTTCAACCAGTTGT................................... 22 1 32.00 4.00 13.00 15.00 0.00 ........................................................................TTGGTCCGCTTCAACCAGCTGT................................... 22 1 31.00 2.00 4.00 25.00 0.00 ........................................................................TTGGGCCCCGTCAACCAGCTGT................................... 22 1 31.00 0.00 0.00 31.00 0.00 ........................................................................TTGGTCCCCTTCAACCAACTGT................................... 22 1 31.00 7.00 11.00 13.00 0.00 .........................................................................TGGTCCCCTTCAACCAGCTGT................................... 21 1 31.00 2.00 7.00 20.00 2.00 ........................................................................TTGGGCCCCTGCAACCAGCTGT................................... 22 1 30.00 0.00 0.00 30.00 0.00 ........................................................................TTGCACCCCTTCAACCAGCTGT................................... 22 1 30.00 0.00 0.00 30.00 0.00 ........................................................................TTGGTCGCCTTCAACCAGCTGT................................... 22 1 30.00 5.00 1.00 24.00 0.00 ........................................................................TTGGGCACCTTCAACCAGCTGT................................... 22 1 30.00 0.00 0.00 30.00 0.00 ........................................................................TAGGACCCCTTCAACCAGCTGT................................... 22 1 30.00 0.00 0.00 30.00 0.00 ........................................................................TTGGTCCCCTTCAACCATCTG.................................... 21 1 29.00 3.00 21.00 4.00 1.00 ........................................................................TTGGTCCCGTTCAACCAGCTGT................................... 22 1 29.00 5.00 5.00 19.00 0.00 ........................................................................TTGGACCCCTTCAACAAGCTGT................................... 22 1 28.00 0.00 0.00 28.00 0.00 ........................................................................TGGGCCCCCTTCAACCAGCTGT................................... 22 1 27.00 0.00 0.00 27.00 0.00 ........................................................................TTGGCCCCCTTCAACCAGCTG.................................... 21 1 26.00 1.00 2.00 23.00 0.00 ..........................................................................GGTCCCCTTCAACCAGCTGT................................... 20 1 26.00 3.00 10.00 13.00 0.00 .................................ATCTGGTTGACATCGGGTCAGAT......................................................................... 23 1 25.00 0.00 25.00 0.00 0.00

droBip1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	scf7180000396566:293454-293581 +	83.95	CATTCGAGAATTTCCACCTGCAACACTGTGTGTAGCTGGTTGACATCGGGTCAGATCT--GTTTTTCAAGCATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTTGATGACAACGAAAGCCTAGTGAAC --TTTGTGAATGATTATCTGCAACGCTGTATGTAGCTGGTTGACATCGGGTCAGATCTACGTTTTTCAAGCATTTGGTCCCCTTCAACCAGCTGTAGC-AGTGGTTGATGACAACAAAGTACAAGTGAAA Size Hit Count Total Norm

dp4 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
2	chr4_group3:7699977-7700121 -	60.11	CATTCGAGAATTTCCACCTGCAAC-ACTGTGTGTAGCTGGTTGACATCGGGTCAGATCTGTTTT-TCAAGCATTTGGTCCCCTTCAACCAGCTGTAGCCAGTGGTTGATGACAACGAAAGCC----------------TAGTGAAC GACGCGTGTGTGCTTATGTACAACGGCTGTATGTAGCTGGTTGACATCGGGTCAGATCTATTTTATCAAGTATTTGGTCCCCTTCAACCAGCTGTA-TCAGTGGTTGATTCCAACAAAAAACAAAAGGTGCCAACAAATAATAAAG Size Hit Count Total Norm V112 Male body V043 Embryo V051 Head M022 Male body .........................................................................TTGGTCCCCTTCAACCAGCTGT................................................... 22 1 50463.00 6085.00 3811.00 40548.00 19.00 .........................................................................TTGGTCCCCTTCAACCAGCTG.................................................... 21 1 2674.00 100.00 218.00 2289.00 67.00 .........................................................................TTGGTCCCCTTCAACCAGCTGTT-................................................. 23 1 839.00 82.00 23.00 734.00 0.00 .........................................................................TTGGTCCCCTTCAACCAGCT..................................................... 20 1 661.00 52.00 13.00 596.00 0.00 .........................................................................TTGGTCCCCTTCAACCAGCTGC................................................... 22 1 229.00 5.00 14.00 210.00 0.00 .........................................................................TTGGACCCCTTCAACCAGCTGT................................................... 22 1 220.00 2.00 16.00 202.00 0.00 ..................................AGCTGGTTGACATCGGGTCAGAT......................................................................................... 23 1 215.00 25.00 150.00 40.00 0.00 .........................................................................TTGGTCCCCTTCAACCAG....................................................... 18 1 200.00 50.00 9.00 141.00 0.00 .........................................................................TTAGTCCCCTTCAACCAGCTGT................................................... 22 1 190.00 2.00 3.00 185.00 0.00 .........................................................................TTGGTCCCCTTCAACCCGCTGT................................................... 22 1 188.00 4.00 32.00 152.00 0.00 ..................................AGCTGGTTGACATCGGGTCAGA.......................................................................................... 22 1 175.00 13.00 148.00 13.00 1.00 .........................................................................TTGGGCCCCTTCAACCAGCTGT................................................... 22 1 167.00 2.00 25.00 139.00 1.00 .........................................................................TGGGTCCCCTTCAACCAGCTGT................................................... 22 1 165.00 0.00 9.00 156.00 0.00 .........................................................................TTGGCCCCCTTCAACCAGCTGT................................................... 22 1 146.00 11.00 19.00 116.00 0.00 .........................................................................TTGGTCCCCTTCCACCAGCTGT................................................... 22 1 94.00 3.00 31.00 60.00 0.00 .........................................................................TTGGTCCCCTTCACCCAGCTGT................................................... 22 1 87.00 2.00 3.00 82.00 0.00 .........................................................................TTGGTCCCCTTCAACAAGCTGT................................................... 22 1 86.00 2.00 7.00 77.00 0.00 .........................................................................TTCGTCCCCTTCAACCAGCTGT................................................... 22 1 86.00 2.00 2.00 82.00 0.00 .........................................................................TTGGTCACCTTCAACCAGCTGT................................................... 22 1 79.00 0.00 12.00 67.00 0.00 .........................................................................TTGGTCTCCTTCAACCAGCTGT................................................... 22 1 79.00 2.00 4.00 73.00 0.00 ..........................................................................TGGTCCCCTTCAACCAGCTGT................................................... 21 1 77.00 8.00 12.00 57.00 0.00 .........................................................................TTGGTCCCCCTCAACCAGCTGT................................................... 22 1 71.00 7.00 6.00 58.00 0.00 .........................................................................TTGGTCCACTTCAACCAGCTGT................................................... 22 1 66.00 1.00 16.00 49.00 0.00 .........................................................................TTGGTCCCATTCAACCAGCTGT................................................... 22 1 66.00 2.00 12.00 52.00 0.00 .........................................................................TTGGTCCTCTTCAACCAGCTGT................................................... 22 1 63.00 2.00 4.00 57.00 0.00 .........................................................................TTGGTCCCCTTCAACCAGCTGTT-T................................................ 24 1 60.00 0.00 1.00 59.00 0.00 .........................................................................TTGGTCCCCTTCAACCAGCTGA................................................... 22 1 60.00 8.00 2.00 50.00 0.00 .........................................................................TTGGTCCCCTTCAACCAGCTGG................................................... 22 1 58.00 0.00 10.00 46.00 2.00 .........................................................................TTGGTCCCCTTCAACCGGCTGT................................................... 22 1 57.00 6.00 4.00 47.00 0.00 .........................................................................TTGGTCCCCTTCGACCAGCTGT................................................... 22 1 54.00 5.00 7.00 42.00 0.00 .........................................................................TTGGTCCCCTTCAACCAGCCGT................................................... 22 1 54.00 6.00 4.00 44.00 0.00 .........................................................................TTGGTCCCCTTCAACTAGCTGT................................................... 22 1 53.00 3.00 5.00 45.00 0.00 .........................................................................TTGATCCCCTTCAACCAGCTGT................................................... 22 1 52.00 5.00 4.00 43.00 0.00 .........................................................................TTGGTACCCTTCAACCAGCTGT................................................... 22 1 48.00 5.00 5.00 38.00 0.00 .........................................................................CTGGTCCCCTTCAACCAGCTGT................................................... 22 1 47.00 7.00 5.00 35.00 0.00 .........................................................................TTGGTCCCCTCCAACCAGCTGT................................................... 22 1 47.00 3.00 4.00 40.00 0.00 ........................................................................CTTGGTCCCCTTCAACCAGCTGT................................................... 23 1 47.00 6.00 3.00 38.00 0.00 .........................................................................TTGGTCCCCTTCAGCCAGCTGT................................................... 22 1 46.00 6.00 6.00 34.00 0.00 .........................................................................TCGGTCCCCTTCAACCAGCTGT................................................... 22 1 45.00 6.00 4.00 35.00 0.00 .........................................................................TTGGTCCCCTTCAACCAGCTAT................................................... 22 1 44.00 3.00 3.00 38.00 0.00 .........................................................................TTGCTCCCCTTCAACCAGCTGT................................................... 22 1 44.00 1.00 1.00 42.00 0.00 .........................................................................TTGGTCCCCTTCAACCAGATGT................................................... 22 1 43.00 4.00 0.00 39.00 0.00 .........................................................................TTGGTCCCCTTCAACCAGCTGTA-................................................. 23 1 41.00 3.00 4.00 34.00 0.00 .........................................................................TTTGTCCCCTTCAACCAGCTGT................................................... 22 1 41.00 2.00 2.00 37.00 0.00 .........................................................................TTGGTCCCCTTCAACCATCTGT................................................... 22 1 38.00 3.00 4.00 31.00 0.00 .........................................................................TGGGACCCCTTCAACCAGCTGT................................................... 22 1 38.00 0.00 2.00 36.00 0.00 .........................................................................TTGGTCCCTTTCAACCAGCTGT................................................... 22 1 38.00 2.00 4.00 32.00 0.00 .........................................................................TTGGTCCCCTTCAACCAGCTCT................................................... 22 1 37.00 2.00 4.00 31.00 0.00 .........................................................................TTGGTCCCCGTCAACCAGCTGT................................................... 22 1 35.00 0.00 5.00 30.00 0.00 .........................................................................TTGGTCCCCTTCAACCACCTGT................................................... 22 1 33.00 3.00 1.00 29.00 0.00 .........................................................................ATGGTCCCCTTCAACCAGCTGT................................................... 22 1 30.00 0.00 3.00 27.00 0.00 .........................................................................TTGGTCCCCTTCTACCAGCTGT................................................... 22 1 30.00 0.00 8.00 22.00 0.00 .........................................................................GTGGTCCCCTTCAACCAGCTGT................................................... 22 1 29.00 2.00 0.00 27.00 0.00 .........................................................................TTGGTCCCCTTCAACCAGCTGTC-................................................. 23 1 29.00 7.00 2.00 20.00 0.00 .........................................................................TTGGTCCCCTTCAAACAGCTGT................................................... 22 1 28.00 2.00 6.00 20.00 0.00 .........................................................................TTGGTCCCCTTCAACCAGCTT.................................................... 21 1 26.00 3.00 2.00 21.00 0.00 .........................................................................TTGTTCCCCTTCAACCAGCTGT................................................... 22 1 24.00 0.00 2.00 22.00 0.00 .........................................................................TTGGTTCCCTTCAACCAGCTGT................................................... 22 1 24.00 0.00 6.00 18.00 0.00 .........................................................................TTGGTCCCCTTCAATCAGCTGT................................................... 22 1 23.00 3.00 2.00 18.00 0.00 .........................................................................TTGGTCCCCTTCATCCAGCTGT................................................... 22 1 23.00 0.00 2.00 21.00 0.00 .........................................................................TTGGACACCTTCAACCAGCTGT................................................... 22 1 22.00 0.00 9.00 13.00 0.00 .........................................................................TTGGTCCCCTTCAACCTGCTGT................................................... 22 1 22.00 1.00 4.00 17.00 0.00 .........................................................................TTGGTCCCCTTTAACCAGCTGT................................................... 22 1 20.00 2.00 2.00 16.00 0.00 .........................................................................TTGGACCCCTTCAACAAGCTGT................................................... 22 1 20.00 0.00 2.00 18.00 0.00 .........................................................................TTGGTCCCCTTCAACCAGCTTT................................................... 22 1 20.00 0.00 1.00 19.00 0.00 .........................................................................TTGGTCCCCTTCAACCAACTGT................................................... 22 1 20.00 1.00 3.00 16.00 0.00 .........................................................................TGGGTCCCCTTCAACCAGCTGG................................................... 22 1 19.00 0.00 1.00 18.00 0.00 .........................................................................TTGGGCACCTTCAACCAGCTGT................................................... 22 1 19.00 0.00 3.00 16.00 0.00 .........................................................................TTGGTCCCCTTAAACCAGCTGT................................................... 22 1 18.00 3.00 2.00 13.00 0.00 .........................................................................TTGGGCCCCTGCAACCAGCTGT................................................... 22 1 17.00 0.00 0.00 17.00 0.00 .........................................................................TTGGTCCCCTGCAACCAGCTGT................................................... 22 1 17.00 0.00 2.00 15.00 0.00 .........................................................................TTGGTCCCCTTCAACCAGTTGT................................................... 22 1 17.00 1.00 1.00 15.00 0.00 .........................................................................TAGGTCCCCTTCAACCAGCTGT................................................... 22 1 17.00 1.00 2.00 14.00 0.00 .........................................................................TTGGTCCGCTTCAACCAGCTGT................................................... 22 1 16.00 0.00 4.00 12.00 0.00 ..................................AGCTGGTTGACATCGGGTCAG........................................................................................... 21 1 16.00 1.00 12.00 3.00 0.00 .........................................................................TTGGTCCCCTTCACCCCGCTGT................................................... 22 1 15.00 0.00 0.00 15.00 0.00 .........................................................................TTGGTCCCCTTCAACCAGCGGT................................................... 22 1 14.00 0.00 1.00 13.00 0.00 .........................................................................TTGGTCCCCTTCCACCCGCTGT................................................... 22 1 13.00 0.00 6.00 7.00 0.00 .........................................................................TTGGACCCCTTCAACCAGCTGG................................................... 22 1 13.00 0.00 4.00 9.00 0.00 .........................................................................TTGGTGCCCTTCAACCAGCTGT................................................... 22 1 13.00 0.00 2.00 11.00 0.00 .........................................................................TGGGTCCCATTCAACCAGCTGT................................................... 22 1 13.00 0.00 0.00 13.00 0.00 .........................................................................TTGGTCCCCTACAACCAGCTGT................................................... 22 1 12.00 1.00 0.00 11.00 0.00 .........................................................................TTGGTCCCCTTCAACCCGCTGC................................................... 22 1 12.00 0.00 0.00 12.00 0.00 .........................................................................TGGGTCCACTTCAACCAGCTGT................................................... 22 1 12.00 0.00 2.00 10.00 0.00 ..........................................................................TTGTCCCCTTCAACCAGCTGT................................................... 21 1 12.00 3.00 0.00 9.00 0.00 .........................................................................TTGGTCCCCTTCAACCAGCTGCT-................................................. 23 1 12.00 0.00 0.00 12.00 0.00 .........................................................................TTGGCCCCCTTCAACCAGCTG.................................................... 21 1 11.00 0.00 0.00 11.00 0.00 .........................................................................TTAGTCCCCTTCAACCAGCTG.................................................... 21 1 11.00 0.00 0.00 11.00 0.00 .........................................................................TTGGTCCCCTTCACCCAGCTG.................................................... 21 1 11.00 0.00 1.00 10.00 0.00 .........................................................................TGGGGCCCCTTCAACCAGCTGT................................................... 22 1 10.00 0.00 1.00 9.00 0.00 .........................................................................TGGGTCCCCTTCATCCAGCTGT................................................... 22 1 10.00 0.00 1.00 9.00 0.00 .........................................................................TAGGACCCCTTCAACCAGCTGT................................................... 22 1 10.00 0.00 0.00 10.00 0.00 .........................................................................TTGGACCACTTCAACCAGCTGT................................................... 22 1 10.00 0.00 2.00 8.00 0.00 .........................................................................TTGGACCCCTTCAACCAGCTG.................................................... 21 1 10.00 0.00 0.00 10.00 0.00 .........................................................................TTGGTCGCCTTCAACCAGCTGT................................................... 22 1 10.00 0.00 2.00 8.00 0.00 ...........................................................................GGTCCCCTTCAACCAGCTGT................................................... 20 1 10.00 1.00 1.00 8.00 0.00 .........................................................................TGGGTCCCCGTCAACCAGCTGT................................................... 22 1 9.00 0.00 0.00 9.00 0.00 .........................................................................TTGCACCCCTTCAACCAGCTGT................................................... 22 1 9.00 0.00 0.00 9.00 0.00 .........................................................................TTGGGCCCCTTCAACCAGCTG.................................................... 21 1 9.00 0.00 0.00 9.00 0.00 .........................................................................TTGGACTCCTTCAACCAGCTGT................................................... 22 1 9.00 0.00 0.00 9.00 0.00 .........................................................................TTGGTCCCCTTCAACCAGCAGT................................................... 22 1 9.00 0.00 0.00 9.00 0.00

droPer1 - 1 hit found