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View alignment of MAF (12-files) vs LASTZ top hits (20-flies)

View all possible LASTZ hits (20-flies)

dme-mir-1017

chr3R:20314334-20314502 +

Known_mirbase
[View on miRBase] [View on UCSC Genome Browser {Cornell Mirror}]

tailed_mirtron

Legend:

   mature strand at position 20314379-20314401
   star strand at position 20314334-20314352
   mutations
   read mismatches

20-way Fast Statistical Aligner (FSA) re-alignment

Visually pleasing best hits from LASTZ and MAF


Species Coordinate Source Confidence Alignment
dm3 chr3R:20314319-20314517 + 1 CCGAACCGTATCCGGGTGAGTTTAGTGGAGTT-TAAAGCTTCCC-------ATCGCCAGCAA-----------TTACGCGAAAGCTCTACCCAAACTCATCCCCCGAAAAT-GA---TC-----------------------------------------CC-----TTTCTCCCCTTTTC--CCAA----CACA-----------TTT-------G------------------------------------------------------TATCCCACTTCCT--GCG----------------------------------CGTCTTCGTGGATTTGTA---ACTGCTT------------CAA--TGG------------------CTGGACGGTT-TAGATATCTTCTTCAACA
droSim1 chr3R:20155121-20155319 + LASTZ 1 CCGAACCGTATCCGGGTGAGTTTAGTGGAGTT-TAAAGCTTCCC-------ATCGCCAGCAA-----------TTACGCGAAAGCTCTACCCAAACTCATCCCCTGAAAAA-TA---TC-----------------------------------------CC-----TCTCTCCCCTTTTC--CCGA----CACT-----------TTT-------G------------------------------------------------------TAACCCACTTCCT--GCA----------------------------------CGACTTCATGGATTTGTA---ACTGCTT------------CAA--TGG------------------CTGGACGGTT-TAGATATCTTCTTCAATA
droSec1 super_0:20650438-20650636 + LASTZ 1 CCGAACCGTATCCGGGTGAGTTTAGTGGAGTT-TAAAGCTTCCC-------ATCGCCAGCAA-----------TTACGCGAAAGCTCTACCCAAACTCATCCCCTGAAAAA-TA---TC-----------------------------------------CC-----TCTCTCCCCTTTTC--CTCA----CACA-----------CTT-------G------------------------------------------------------TATCCCACTTCCT--GCG----------------------------------CGACTTCATGGATTTGTA---ACTGCTT------------CAA--TGG------------------CTGGACGGTT-TAGATATCTTCTTCAACA
droYak2 chr3R:26186848-26187051 - LASTZ 1 CCGAGCCGTATCCGGGTGAGTTTAGTGGAGTT-TAAAGCTTCCC-------ATCGCCAGCAA-----------TTACGCGAAAGCTCTACCCAAACTCATCCCCTGAAAAAATA---TC-----------------------------------------CC-----TTTCCCTCTTTTTT--CCAA----CACATT---------CTT-------G------------------------------------------------------TATCCCACTTTTT--TTG----------------------------------CGCCTTCTTGGATGTGTG---ACTGCTG------------CAA--TGGCC----------------ATGGACTGTT-TAGATATCTTCTTCAATA
droEre2 scaffold_4820:7744417-7744612 - LASTZ 1 CCGAACCGTATCCGGGTGAGTTTAGTGGAGTT-TAAAGCTTCCC-------ATCGCCAGCAA-----------TTACGCGAAAGCTCTACCCAAACTCATCCCCTGAAAAA-TA---TC-----------------------------------------CC-----TTTCC--CCCTTTC--CCAA----CACA-----------CTT-------G------------------------------------------------------TATCCCACTTCTC--GCG----------------------------------CGAC-TCTTGGACTTGTG---GCTGCTT------------CAC--TGG------------------CTGGACTATT-TAGATATCTTCTTCAACA
droEug1 scf7180000409881:35440-35632 + LASTZ 4 CTGAACCGTATCCGGGTGAGTTTAGTGGAGTT-TAATGCTTCCT-------ATCGCCAGCAA-----------TTACGCGAAAGCTCTACCCAAACTCATCCCCTGAACA----TTTTC-----------------------------------------CT-----ACCCTC------TCCTCCAA--------------C---T-TTGC--------------------------------------------------TTT----------ACTATTCCTA--CCG----------------------------------CGACTTTTTGGATTTTTG---ACTGGTT------------AAA--TGT------------------CTGGCCTGTA-CAGACATCTTCTTTAACA
droBia1 scf7180000302136:685749-685941 + LASTZ 4 CGGAGCCGTATCCGGGTGAGTTTAGTGGAGTT-TAAAGC---CC-------ATCGCCTGCAA-----------TTACGCGAAAGCTCTACCCAAACTCATCCCCTGAAAA----ATTGT-----------------------------------------CC-----TCCCTC------TCC--CC-CCAAAA--------C---TTTT-------A------------------------------------------------------CCATCTTTTTTCA--CCG----------------------------------CAACTTCTTGGATTTTTG---ACTGGTT------------TGA--TGG------------------CTGGCCTGTT-CAGATATCTTCTTTAACA
droTak1 scf7180000415769:2087499-2087712 - LASTZ 4 CCGAACCGTATCCGGGTGAGTTTAGTGGAGTT-TAAAGCTTCCC-------ATCGCCGGCAA-----------TTACGCGAAAGCTCTACCCAAACTCATCCCCCAAAAAA-CATTTTC-----------------------------------------CC-----TCCCT---CTTTTC--CCC-----CAAA-----AAAAAT---------------------------------------------------ATTTATTTATCA--TATGCAATATCAT--ACG----------------------------------CAACTTCTTGGACTTGTA---ACTGTTT------------T----TGGCC--------------AACTGGCCTGTT-CAGATATCTTCTTCAATA
droEle1 scf7180000491047:474866-475065 - LASTZ 4 CGGAGCCGTATCCGGGTGAGTTTAGTGGAGTT-TAATGCTTCCC-------ATCGCCGGCAA-----------TTACGCGAAAGCTCTACCCAAACTCATCCCCTCAAAA----TCTCT-----------------------------------------CT------CC----CCCTCTC--CCGT----T--G-----AT---T-CT--ATCCCATT-------------------------------------------TC----------TCCATTTCAC--CTG----------------------------------CGACAACTGGGATTTGTG---ACTGATT------------TAA--TGC------------------CTGACTTGCT-CAGATATCTTCTTCAATA
droRho1 scf7180000777890:62046-62235 + LASTZ 4 CGGAGCCGTATCCGGGTGAGTTTAGTGGAGTT-TAATGCTTCCC-------ATCGCCGACAA-----------TGACGCGAAAGCTCTACCCAAACTCATCCCCTGAAAA----TTTCT-----------------------------------------CT------CCCTC------TC--CCTT----T--G-----AT---T-CT-----------------------------------------------------GT----------GATATTTCTC--CTG----------------------------------CGATGTCTTGGATTTCTG---ACTGATT------------TAA--TGC------------------CTGACTTGTG-CAGATATCTTCTTCAATA
droFic1 scf7180000453912:1499652-1499841 + LASTZ 4 CGGAACCGTATCCGGGTGAGTTTAGTGGAGTT-TAATGCTTCCC-------ATCGCCGACAA-----------TTACGCGAAAGCTCTACCCAAACTCATCCCCTCAAAA----AATAT-----------------------------------------CT------ACCCC--TCTTT---CCTA----CAAC-------------------------------------------------------------------TC------------TATTTCTATTTTG----------------------------------CTGCTTCCTGGATTTGTG---ACTGGTT------------TAA--TGA------------------CTGGTTTAAT-CAGATATCTTCTTCAACA
droKik1 scf7180000302387:220847-221037 + LASTZ 4 CGGAGCCCTATCCGGGTGAGTTTAGTGGAGTT-TAAAGCCTCCA-------ATCGCCGGCAA-----------TTGCGCGAAAGCTCTACCCAAACTCATCCCCTGAAAA----TTTCT-----------------------------------------AC------CCTAC------TC--CCT-GT------------A---T-TT--ATCC----------------------------------------------CTC------------GATTTCTC--TGG----------------------------------TGAT-----------------------------------GTCCTCTGGCTACTGAATTGAAATGAACTGGCTTGTT-CAGATATCTTCTTCAATA
droAna3 scaffold_13088:356279-356461 + LASTZ 1 CCGAGCCGTATCCGGGTGAGTTTAGTGGAGTT-TAATGCTTCTC-------ATCGCCGGCCC-----------TTTCGCGAAAGCTCTACCCAAACTCATCCCCTGAAAA----CCTTT-----------------------------------------TT------TCCCC-------------C----C--ATTTTCTT-------CC--------------------------------------------------CTT----------ACTGTTT-----TTGCACTTTGGAT--------------------TTTA--------------TGTG---GC----C------------TGC--TGG------------------ATGGCTTCTT-CAGATATATTTTTCAACA
droBip1 scf7180000396413:412907-413093 + LASTZ 4 CCGAACCGTATCCGGGTGAGTTTAGTGGAGTT-TAATGCTTCTC-------ATCGCCGGCCC-----------TTTCGCGAAAGCTCTACCCAAACTCATCCCCCGAAAA----AATAC-----------------------------------------CT-----TCTTTCCCC--------CC--------ATTTTCTT-------CC--------------------------------------------------TTT----------ACTGTTT-----TTGCTTTTCGGAT--------------------AT--------------TTTGTG---GCCGCTT------------CGA--TTA----------------------CTTGTT-CAGATATATTCTTCAACA
dp4 chr2:18479367-18479560 - LASTZ 1 CCGAACCGTATCCGGGTGAGTTTTGTGGAGTT-TAAAGTTAACA-------ATCGCCGACAATCA------AATTACGCGAAAGCTCTACCCAAACTCATCCCTCACAAT------TGT-----------------------------------------TTTCCTC------------CCC--CA-CCAA---A-----AA---T---------------------------------------------------CTCCCTC-ACCCTGTAAATCA------------------------------------------CTA--------------TGCG---GCTGCTG---------CTGGTATTCGGC-----------------TTGGACTGTTCCAGATATCTTCTTCAATA
droPer1 super_3:1203012-1203205 - LASTZ 1 CCGAACCGTATCCGGGTGAGTTTTGTGGAGTT-TAAAGTTTACA-------ATCGCCGACAATCA------AATTACGCGAAAGCTCTACCCAAACTCATCCCTCACAAT------TGT-----------------------------------------TTTCCTC------------CCC--CA-CCAA---A-----AA---T---------------------------------------------------CTCCCTC-TCCCTGTAAATCA------------------------------------------CTA--------------TGCG---GCTGCTG---------CTGGTATTCGGC-----------------TTGGACTGTTCCAGATATCTTCTTCAATA
droWil1 scaffold_181108:4383442-4383643 - LASTZ 1 CTGAACCATATCCAGGTGAGTTTTGTAGAGTTTTAAAGCTATAA-------ATCGCCGGTAAATAGACGTTAAAGACGCGAAAGCTCTACCCAAACTCAC-CCCGGAAAT-----TTTT-----------------------------------------TT-----ATTCTC-TTTTTTC--CCAA----CAAA-----------AAT-------A------------------------------------------------------ATGACAATTT----------------------------------------------ATCTTGGAAATTTGGTAAACACTT----------T-AAA--TAA------------------TTGTATATAT-TAGATATATTTTTCAATA
droVir3 scaffold_13047:3684405-3684633 + LASTZ 1 CCGAGCCGTATCCGGGTGAGTTTCGTAGAGTT-TAAAGCTCTTA--CTTTGCTCGCTGGCAC----GC-----CCACGCGAAAGCTCTACCCAAACTCAC--TATGCAAA----CCCCCAACCCATACCCAAATCCA--------------------------------------------------------------------------------------------TGCTCCTTGTCTCTCTCTCTCTCTCTTTCTCTCTC----------------------TCT----------CTCTCTCTCTCCACTTTTGTTTCA-----------------------TGCTGCACTCGC---TGGCTCTTG--------------------TTGAATGTT-CAGACATATTCTTTAATA
droMoj3 scaffold_6540:20694202-20694463 + LASTZ 1 CCGAGCCCTATCCCGGTGAGTTTCGTAGAGTT-TAAAGCTCACA--CTTTGCTCGCCAACAA----GC-----GCACGCGAAAGCTCTACCCAAACTCAC--TATGAAAA----TCTATACTCCAAACCCGAATCCAATCTTCGTGGATTCCATCATCGTGTCTCTC------------TCT--CT-CTCT---C-----TC---T---------------------------------------------------CTCTCTC-TCTCTGTTTGTCT-------------TTCTGGATCTCTTTCTTTCTTTTGGTATTTCA-----------------------TGCTGCTCTCGC---TGGCCTT--G------------------ATCAAATGTT-CAGACATCTTCTTCAACA
droGri2 scaffold_14906:340737-340980 + LASTZ 4 CGGAACCGTATCCGGGTGAGTTTCGTAGGGTT-TAAAGCAACAAAACTTTGCTCGCCGACAC----GC-----GTACGCGAAAGCTCTACCCAAACTCAC--TATGGAAA----CCCGT-----------------------------------------ATCCCAA------------CCC--CC-CAAA---T-----AA---T-CC--AACCAATATCCCAATCCTGGCCTGTTCGTTCTCGTGTTCTTTGCTTTTCT--------------------CTT--CTG----------------------------------CTCTTTCTTG-----------CCTGCTGCGATTGCTGCTTGTT--TTG------------------CTAAAATGTT-TAGACATATTCTTCAATA

Legend

0- The ortholog is absent. A better synthenic sequence candidate could not be found.
1- Reads w/ good pileup on mature and star strand & folds into hairpin structure.
2- Reads w/ good pileup on mature and star strand BUT does not fold into hairpin structure.
3- Sporadic reads & folds into a hairpin structure.
4- No reads but folds into a hairpin structure.
5- Ortholog is confident but miRNA appears absent (no reads and does not fold into a hairpin)

Re-alignment after removal of non-confident orthologs

Species Alignment
dm3 CCGAACCGTATCCGGGTGAGTTTAGTGGAGTT-TAAAGCTTCCC-------ATCGCCAGCAA-----------TTACGCGAAAGCTCTACCCAAACTCATCCCCCGAAAAT-GA---TC-----------------------------------------CC-----TTTCTCCCCTTTTC--CCAA----CACA-----------TTT-------G------------------------------------------------------TATCCCACTTCCT--GCG----------------------------------CGTCTTCGTGGATTTGTA---ACTGCTT------------CAA--TGG------------------CTGGACGGTT-TAGATATCTTCTTCAACA
droSim1 CCGAACCGTATCCGGGTGAGTTTAGTGGAGTT-TAAAGCTTCCC-------ATCGCCAGCAA-----------TTACGCGAAAGCTCTACCCAAACTCATCCCCTGAAAAA-TA---TC-----------------------------------------CC-----TCTCTCCCCTTTTC--CCGA----CACT-----------TTT-------G------------------------------------------------------TAACCCACTTCCT--GCA----------------------------------CGACTTCATGGATTTGTA---ACTGCTT------------CAA--TGG------------------CTGGACGGTT-TAGATATCTTCTTCAATA
droSec1 CCGAACCGTATCCGGGTGAGTTTAGTGGAGTT-TAAAGCTTCCC-------ATCGCCAGCAA-----------TTACGCGAAAGCTCTACCCAAACTCATCCCCTGAAAAA-TA---TC-----------------------------------------CC-----TCTCTCCCCTTTTC--CTCA----CACA-----------CTT-------G------------------------------------------------------TATCCCACTTCCT--GCG----------------------------------CGACTTCATGGATTTGTA---ACTGCTT------------CAA--TGG------------------CTGGACGGTT-TAGATATCTTCTTCAACA
droYak2 CCGAGCCGTATCCGGGTGAGTTTAGTGGAGTT-TAAAGCTTCCC-------ATCGCCAGCAA-----------TTACGCGAAAGCTCTACCCAAACTCATCCCCTGAAAAAATA---TC-----------------------------------------CC-----TTTCCCTCTTTTTT--CCAA----CACATT---------CTT-------G------------------------------------------------------TATCCCACTTTTT--TTG----------------------------------CGCCTTCTTGGATGTGTG---ACTGCTG------------CAA--TGGCC----------------ATGGACTGTT-TAGATATCTTCTTCAATA
droEre2 CCGAACCGTATCCGGGTGAGTTTAGTGGAGTT-TAAAGCTTCCC-------ATCGCCAGCAA-----------TTACGCGAAAGCTCTACCCAAACTCATCCCCTGAAAAA-TA---TC-----------------------------------------CC-----TTTCC--CCCTTTC--CCAA----CACA-----------CTT-------G------------------------------------------------------TATCCCACTTCTC--GCG----------------------------------CGAC-TCTTGGACTTGTG---GCTGCTT------------CAC--TGG------------------CTGGACTATT-TAGATATCTTCTTCAACA
droEug1 CTGAACCGTATCCGGGTGAGTTTAGTGGAGTT-TAATGCTTCCT-------ATCGCCAGCAA-----------TTACGCGAAAGCTCTACCCAAACTCATCCCCTGAACA----TTTTC-----------------------------------------CT-----ACCCTC------TCCTCCAA--------------C---T-TTGC--------------------------------------------------TTT----------ACTATTCCTA--CCG----------------------------------CGACTTTTTGGATTTTTG---ACTGGTT------------AAA--TGT------------------CTGGCCTGTA-CAGACATCTTCTTTAACA
droBia1 CGGAGCCGTATCCGGGTGAGTTTAGTGGAGTT-TAAAGC---CC-------ATCGCCTGCAA-----------TTACGCGAAAGCTCTACCCAAACTCATCCCCTGAAAA----ATTGT-----------------------------------------CC-----TCCCTC------TCC--CC-CCAAAA--------C---TTTT-------A------------------------------------------------------CCATCTTTTTTCA--CCG----------------------------------CAACTTCTTGGATTTTTG---ACTGGTT------------TGA--TGG------------------CTGGCCTGTT-CAGATATCTTCTTTAACA
droTak1 CCGAACCGTATCCGGGTGAGTTTAGTGGAGTT-TAAAGCTTCCC-------ATCGCCGGCAA-----------TTACGCGAAAGCTCTACCCAAACTCATCCCCCAAAAAA-CATTTTC-----------------------------------------CC-----TCCCT---CTTTTC--CCC-----CAAA-----AAAAAT---------------------------------------------------ATTTATTTATCA--TATGCAATATCAT--ACG----------------------------------CAACTTCTTGGACTTGTA---ACTGTTT------------T----TGGCC--------------AACTGGCCTGTT-CAGATATCTTCTTCAATA
droEle1 CGGAGCCGTATCCGGGTGAGTTTAGTGGAGTT-TAATGCTTCCC-------ATCGCCGGCAA-----------TTACGCGAAAGCTCTACCCAAACTCATCCCCTCAAAA----TCTCT-----------------------------------------CT------CC----CCCTCTC--CCGT----T--G-----AT---T-CT--ATCCCATT-------------------------------------------TC----------TCCATTTCAC--CTG----------------------------------CGACAACTGGGATTTGTG---ACTGATT------------TAA--TGC------------------CTGACTTGCT-CAGATATCTTCTTCAATA
droRho1 CGGAGCCGTATCCGGGTGAGTTTAGTGGAGTT-TAATGCTTCCC-------ATCGCCGACAA-----------TGACGCGAAAGCTCTACCCAAACTCATCCCCTGAAAA----TTTCT-----------------------------------------CT------CCCTC------TC--CCTT----T--G-----AT---T-CT-----------------------------------------------------GT----------GATATTTCTC--CTG----------------------------------CGATGTCTTGGATTTCTG---ACTGATT------------TAA--TGC------------------CTGACTTGTG-CAGATATCTTCTTCAATA
droFic1 CGGAACCGTATCCGGGTGAGTTTAGTGGAGTT-TAATGCTTCCC-------ATCGCCGACAA-----------TTACGCGAAAGCTCTACCCAAACTCATCCCCTCAAAA----AATAT-----------------------------------------CT------ACCCC--TCTTT---CCTA----CAAC-------------------------------------------------------------------TC------------TATTTCTATTTTG----------------------------------CTGCTTCCTGGATTTGTG---ACTGGTT------------TAA--TGA------------------CTGGTTTAAT-CAGATATCTTCTTCAACA
droKik1 CGGAGCCCTATCCGGGTGAGTTTAGTGGAGTT-TAAAGCCTCCA-------ATCGCCGGCAA-----------TTGCGCGAAAGCTCTACCCAAACTCATCCCCTGAAAA----TTTCT-----------------------------------------AC------CCTAC------TC--CCT-GT------------A---T-TT--ATCC----------------------------------------------CTC------------GATTTCTC--TGG----------------------------------TGAT-----------------------------------GTCCTCTGGCTACTGAATTGAAATGAACTGGCTTGTT-CAGATATCTTCTTCAATA
droAna3 CCGAGCCGTATCCGGGTGAGTTTAGTGGAGTT-TAATGCTTCTC-------ATCGCCGGCCC-----------TTTCGCGAAAGCTCTACCCAAACTCATCCCCTGAAAA----CCTTT-----------------------------------------TT------TCCCC-------------C----C--ATTTTCTT-------CC--------------------------------------------------CTT----------ACTGTTT-----TTGCACTTTGGAT--------------------TTTA--------------TGTG---GC----C------------TGC--TGG------------------ATGGCTTCTT-CAGATATATTTTTCAACA
droBip1 CCGAACCGTATCCGGGTGAGTTTAGTGGAGTT-TAATGCTTCTC-------ATCGCCGGCCC-----------TTTCGCGAAAGCTCTACCCAAACTCATCCCCCGAAAA----AATAC-----------------------------------------CT-----TCTTTCCCC--------CC--------ATTTTCTT-------CC--------------------------------------------------TTT----------ACTGTTT-----TTGCTTTTCGGAT--------------------AT--------------TTTGTG---GCCGCTT------------CGA--TTA----------------------CTTGTT-CAGATATATTCTTCAACA
dp4 CCGAACCGTATCCGGGTGAGTTTTGTGGAGTT-TAAAGTTAACA-------ATCGCCGACAATCA------AATTACGCGAAAGCTCTACCCAAACTCATCCCTCACAAT------TGT-----------------------------------------TTTCCTC------------CCC--CA-CCAA---A-----AA---T---------------------------------------------------CTCCCTC-ACCCTGTAAATCA------------------------------------------CTA--------------TGCG---GCTGCTG---------CTGGTATTCGGC-----------------TTGGACTGTTCCAGATATCTTCTTCAATA
droPer1 CCGAACCGTATCCGGGTGAGTTTTGTGGAGTT-TAAAGTTTACA-------ATCGCCGACAATCA------AATTACGCGAAAGCTCTACCCAAACTCATCCCTCACAAT------TGT-----------------------------------------TTTCCTC------------CCC--CA-CCAA---A-----AA---T---------------------------------------------------CTCCCTC-TCCCTGTAAATCA------------------------------------------CTA--------------TGCG---GCTGCTG---------CTGGTATTCGGC-----------------TTGGACTGTTCCAGATATCTTCTTCAATA
droWil1 CTGAACCATATCCAGGTGAGTTTTGTAGAGTTTTAAAGCTATAA-------ATCGCCGGTAAATAGACGTTAAAGACGCGAAAGCTCTACCCAAACTCAC-CCCGGAAAT-----TTTT-----------------------------------------TT-----ATTCTC-TTTTTTC--CCAA----CAAA-----------AAT-------A------------------------------------------------------ATGACAATTT----------------------------------------------ATCTTGGAAATTTGGTAAACACTT----------T-AAA--TAA------------------TTGTATATAT-TAGATATATTTTTCAATA
droVir3 CCGAGCCGTATCCGGGTGAGTTTCGTAGAGTT-TAAAGCTCTTA--CTTTGCTCGCTGGCAC----GC-----CCACGCGAAAGCTCTACCCAAACTCAC--TATGCAAA----CCCCCAACCCATACCCAAATCCA--------------------------------------------------------------------------------------------TGCTCCTTGTCTCTCTCTCTCTCTCTTTCTCTCTC----------------------TCT----------CTCTCTCTCTCCACTTTTGTTTCA-----------------------TGCTGCACTCGC---TGGCTCTTG--------------------TTGAATGTT-CAGACATATTCTTTAATA
droMoj3 CCGAGCCCTATCCCGGTGAGTTTCGTAGAGTT-TAAAGCTCACA--CTTTGCTCGCCAACAA----GC-----GCACGCGAAAGCTCTACCCAAACTCAC--TATGAAAA----TCTATACTCCAAACCCGAATCCAATCTTCGTGGATTCCATCATCGTGTCTCTC------------TCT--CT-CTCT---C-----TC---T---------------------------------------------------CTCTCTC-TCTCTGTTTGTCT-------------TTCTGGATCTCTTTCTTTCTTTTGGTATTTCA-----------------------TGCTGCTCTCGC---TGGCCTT--G------------------ATCAAATGTT-CAGACATCTTCTTCAACA
droGri2 CGGAACCGTATCCGGGTGAGTTTCGTAGGGTT-TAAAGCAACAAAACTTTGCTCGCCGACAC----GC-----GTACGCGAAAGCTCTACCCAAACTCAC--TATGGAAA----CCCGT-----------------------------------------ATCCCAA------------CCC--CC-CAAA---T-----AA---T-CC--AACCAATATCCCAATCCTGGCCTGTTCGTTCTCGTGTTCTTTGCTTTTCT--------------------CTT--CTG----------------------------------CTCTTTCTTG-----------CCTGCTGCGATTGCTGCTTGTT--TTG------------------CTAAAATGTT-TAGACATATTCTTCAATA

20-way Secondary Structure

dm3 droSim1 droSec1 droYak2 droEre2 droEug1 droBia1 droTak1 droEle1 droRho1 droFic1 droKik1 droAna3 droBip1 dp4 droPer1 droWil1 droVir3 droMoj3 droGri2
RNAfold Image
UNAFold Image

Small RNA-seq read pileup

Species Alignment
droSim1
CCGAACCGTATCCGGGTGAGTTTAGTGGAGTT-TAAAGCTTCCC-------ATCGCCAGCAA-----------TTACGCGAAAGCTCTACCCAAACTCATCCCCTGAAAAA-TA---TC-----------------------------------------CC-----TCTCTCCCCTTTTC--CCGA----CACT-----------TTT-------G------------------------------------------------------TAACCCACTTCCT--GCA----------------------------------CGACTTCATGGATTTGTA---ACTGCTT------------CAA--TGG------------------CTGGACGGTT-TAGATATCTTCTTCAATASizeHit CountTotal NormV044
Embryo		M023
Head		M024
Male body		M025
Embryo
...............................................................................GAAAGCTCTACCCAAACTCATCC............................................................................................................................................................................................................................................................................................................................231292.0016.00244.001.0031.00
...............................................................................GAAAGCTCTACCCAAACTCATC.............................................................................................................................................................................................................................................................................................................................221108.008.0089.000.0011.00
...............................................................................GAAAGCTCTACCCAAACTCATCCC...........................................................................................................................................................................................................................................................................................................................24199.008.0067.002.0022.00
...............................................................................GAAAGCTCTACCCAAACTCATCCT...........................................................................................................................................................................................................................................................................................................................24115.000.0014.000.001.00
...............................................................................GAAAGCTCTACCCAAACTCAT..............................................................................................................................................................................................................................................................................................................................21114.001.0010.000.003.00
...............................................................................GAAAGCTCTACCCAAACT.................................................................................................................................................................................................................................................................................................................................1815.000.005.000.000.00
...............................................................................GAAAGCTCTACCCAAACTCATCT............................................................................................................................................................................................................................................................................................................................2314.001.002.000.001.00
...............................................................................GAAAGCTCTACCCAAACTCATCCCT..........................................................................................................................................................................................................................................................................................................................2512.000.002.000.000.00
................................................................................AAAGCTCTACCCAAACTCATC.............................................................................................................................................................................................................................................................................................................................2112.000.002.000.000.00
...............................................................................GAAAGCTCTACCCAAACTC................................................................................................................................................................................................................................................................................................................................1912.000.002.000.000.00
................................................................................AAAGCTCTACCCAAACTCATCC............................................................................................................................................................................................................................................................................................................................2212.000.002.000.000.00
...............................................................................GAAAGCTCTACCCTAACTCATC.............................................................................................................................................................................................................................................................................................................................2211.001.000.000.000.00
...............................................................................GAAAGxxCTACCCAAACTCATCC............................................................................................................................................................................................................................................................................................................................2111.000.001.000.000.00
................................................................................AAAGCTCTACCCAAACTCATCCC...........................................................................................................................................................................................................................................................................................................................2311.000.001.000.000.00
...............................................................................GAAAGCCCTACCCAAACTCATC.............................................................................................................................................................................................................................................................................................................................2211.000.001.000.000.00
...............GTGAGTTTAGTGGAGTT-T................................................................................................................................................................................................................................................................................................................................................................................................1811.001.000.000.000.00
...............................................................................GAAAGCTCTAxCCAAACTCATC.............................................................................................................................................................................................................................................................................................................................2111.001.000.000.000.00
...............................................................................GAAAGCTCTACCCAAACTCAC..............................................................................................................................................................................................................................................................................................................................2111.000.001.000.000.00
...............................................................................GAAAGCTCTACCCAAACTCATGC............................................................................................................................................................................................................................................................................................................................2311.000.001.000.000.00
...............................................................................GAAAGCTCTACCCAAACTCATCAC...........................................................................................................................................................................................................................................................................................................................2411.000.001.000.000.00
...............................................................................GAAACCTCTACCCAAACTCATCCC...........................................................................................................................................................................................................................................................................................................................2411.000.001.000.000.00
................................................................................AAAGCTCTACCCAAACTCACCT............................................................................................................................................................................................................................................................................................................................2211.000.001.000.000.00
.....................................................................................TCTACCCAAACTCATCCT...........................................................................................................................................................................................................................................................................................................................1811.000.001.000.000.00
...............................................................................GAAAGCTCTACCCTAACTCATCC............................................................................................................................................................................................................................................................................................................................2311.001.000.000.000.00
...............................................................................GAAAGCTCTACCCAAACTCATCCG...........................................................................................................................................................................................................................................................................................................................2411.000.001.000.000.00
...............................................................................GAAAGCTCTACCCCAACTCATC.............................................................................................................................................................................................................................................................................................................................2211.001.000.000.000.00
...............................................................................GAAAGCTCTACCCAAACTCATCA............................................................................................................................................................................................................................................................................................................................2311.000.001.000.000.00
...............................................................................GAAAGCTCTACCCAACCTCATCC............................................................................................................................................................................................................................................................................................................................2311.001.000.000.000.00
...............................................................................GAAGGCTCTACCCAAACTCATCCC...........................................................................................................................................................................................................................................................................................................................2411.001.000.000.000.00
...............................................................................GAAAGCTCTACCGAAACTCATCCC...........................................................................................................................................................................................................................................................................................................................2411.000.001.000.000.00
...............................................................................GAAAGCTCTACCCAAAATCATCC............................................................................................................................................................................................................................................................................................................................2311.000.001.000.000.00
...............................................................................GAAAGCTCTACCCAAACTCATCCA...........................................................................................................................................................................................................................................................................................................................2411.000.000.000.001.00
...............................................................................GAAAGCTCTACCCAAATTCATCCC...........................................................................................................................................................................................................................................................................................................................2411.000.001.000.000.00
...............................................................................GAAAGCTCTACCCAAACTCACC.............................................................................................................................................................................................................................................................................................................................2211.000.001.000.000.00
...............................................................................GAAAGCTCTAACCAAACTCATCA............................................................................................................................................................................................................................................................................................................................2311.001.000.000.000.00
...............................................................................GAAAGCTCTACCCAAAATCATC.............................................................................................................................................................................................................................................................................................................................2211.000.001.000.000.00
..................................................................................................................................................................................................T-----------TTT-------G------------------------------------------------------xAACCCACTTACT--G...................................................................................................................................1811.000.000.001.000.00
...............................................................................GAAAGCTCTACCCAAACTCAGCC............................................................................................................................................................................................................................................................................................................................2311.001.000.000.000.00
droSec1
CCGAACCGTATCCGGGTGAGTTTAGTGGAGTT-TAAAGCTTCCC-------ATCGCCAGCAA-----------TTACGCGAAAGCTCTACCCAAACTCATCCCCTGAAAAA-TA---TC-----------------------------------------CC-----TCTCTCCCCTTTTC--CTCA----CACA-----------CTT-------G------------------------------------------------------TATCCCACTTCCT--GCG----------------------------------CGACTTCATGGATTTGTA---ACTGCTT------------CAA--TGG------------------CTGGACGGTT-TAGATATCTTCTTCAACASizeHit CountTotal NormV113
Male body		V114
Embryo		V115
Head
...............................................................................GAAAGCTCTACCCAAACTCATCC............................................................................................................................................................................................................................................................................................................................231177.004.0015.00158.00
...............................................................................GAAAGCTCTACCCAAACTCATCCC...........................................................................................................................................................................................................................................................................................................................24195.001.0014.0080.00
...............................................................................GAAAGCTCTACCCAAACTCATC.............................................................................................................................................................................................................................................................................................................................22195.004.0014.0077.00
...............................................................................GAAAGCTCTACCCAAACTCAT..............................................................................................................................................................................................................................................................................................................................21116.002.000.0014.00
...............................................................................GAAAGCTCTACCCAAACTCA...............................................................................................................................................................................................................................................................................................................................2018.000.000.008.00
...............................................................................GAAAGCTCTACCCAAACTCATCT............................................................................................................................................................................................................................................................................................................................2315.000.000.005.00
...............GTGAGTTTAGTGGAGTT-TA...............................................................................................................................................................................................................................................................................................................................................................................................1913.001.001.001.00
................................................................................AAAGCTCTACCCAAACTCATCC............................................................................................................................................................................................................................................................................................................................2213.000.000.003.00
...............................................................................GAAAGCTCTACCCAAACTCATCCT...........................................................................................................................................................................................................................................................................................................................2413.000.000.003.00
...............................................................................GAAAGCTCTACCCAAACTCATCCA...........................................................................................................................................................................................................................................................................................................................2413.000.000.003.00
...............................................................................GAAAGCTCTACCCAAACTCACCC............................................................................................................................................................................................................................................................................................................................2312.000.000.002.00
...............................................................................GAAAGCTCTACCCAAACTCATCA............................................................................................................................................................................................................................................................................................................................2312.000.000.002.00
...............................................................................GAAAGCTCTATCCAAACTCATCC............................................................................................................................................................................................................................................................................................................................2311.000.001.000.00
...............................................................................GAAAGCTCTACCCAAACTCATCCCT..........................................................................................................................................................................................................................................................................................................................2511.000.000.001.00
...............................................................................GAAACCTCTACCCAAACTCATCC............................................................................................................................................................................................................................................................................................................................2311.000.001.000.00
................................................................................AAAGCTCTACCCAAACTCA...............................................................................................................................................................................................................................................................................................................................1911.000.000.001.00
...............................................................................GAAAGCTCTACCCAAACTCAA..............................................................................................................................................................................................................................................................................................................................2111.000.000.001.00
................................................................................AAAGCTCTACCCAAACTCATCCC...........................................................................................................................................................................................................................................................................................................................2311.000.001.000.00
...............................................................................GAAAGCCCTACCCAAACTCATCCC...........................................................................................................................................................................................................................................................................................................................2411.000.000.001.00
................................................................................AAAGCTCTACCCAAACTCATC.............................................................................................................................................................................................................................................................................................................................2111.000.000.001.00
...............................................................................GAAAGCTCTACCCAAACTCATCAC...........................................................................................................................................................................................................................................................................................................................2411.000.000.001.00
...............GTGAGCTTAGTGGAGTT-TAAA.............................................................................................................................................................................................................................................................................................................................................................................................2111.000.000.001.00
...............................................................................GTAAGCTCTACCCAAACTCATCCT...........................................................................................................................................................................................................................................................................................................................2411.000.001.000.00
...............................................................................GAAAGCTCTACCCAAACTC................................................................................................................................................................................................................................................................................................................................1911.000.000.001.00
...............................................................................GAAAGCTCTACCCGAACTCAT..............................................................................................................................................................................................................................................................................................................................2111.000.000.001.00
...............................................................................GAAAGCTCTACCCAAACTCATT.............................................................................................................................................................................................................................................................................................................................2211.000.001.000.00
...............................................................................GAAAGCTCTACCCAAACTCGTCCC...........................................................................................................................................................................................................................................................................................................................2411.001.000.000.00
...............................................................................GAAAGCTCTACCTAAACTCATCC............................................................................................................................................................................................................................................................................................................................2311.000.001.000.00
................................................................................................................................................................................................................................................................................ATxCCAGTTCCT--GCG----------------------------------CGACT..........................................................................................1911.000.001.000.00
...............................................................................GAAAGCTCTACCCAAACTCC...............................................................................................................................................................................................................................................................................................................................2011.000.000.001.00
...............................................................................GAAAGCTCTACTCAAACTCATCC............................................................................................................................................................................................................................................................................................................................2311.000.000.001.00
................TGAGTTTAGTGGAGTT-TAA..............................................................................................................................................................................................................................................................................................................................................................................................1911.000.000.001.00
...............GTGAGTTTAGTGGAGTT-TAAAGCTTC........................................................................................................................................................................................................................................................................................................................................................................................2611.000.000.001.00
...............GTGAGTTTAGTGGAGTT-TAAAGCTTCC.......................................................................................................................................................................................................................................................................................................................................................................................2711.001.000.000.00
...............................................................................GAAAGCTCTACCCAAACTCATCCCA..........................................................................................................................................................................................................................................................................................................................2511.000.000.001.00
...............................................................................GAAAGCTCTACCCxAACTCC...............................................................................................................................................................................................................................................................................................................................1911.000.000.001.00
................................................................................GAAGCTCTACCCAAACTCATC.............................................................................................................................................................................................................................................................................................................................2111.000.000.001.00
..............................................................................CGAAAGCTCTACCCAAACTCA...............................................................................................................................................................................................................................................................................................................................2111.000.000.001.00
................................................................................AAAGCTCTACCCAAACTCATCT............................................................................................................................................................................................................................................................................................................................2211.000.000.001.00
...............................................................................GAAAGCACTACCCAAACTCATC.............................................................................................................................................................................................................................................................................................................................2211.000.000.001.00
...............................................................................GAAATCTCTACCCAAACTCATCCC...........................................................................................................................................................................................................................................................................................................................2411.001.000.000.00
...............................................................................GAAAGCTCTACCAAAACTCATCC............................................................................................................................................................................................................................................................................................................................2311.000.000.001.00
droYak2
CCGAGCCGTATCCGGGTGAGTTTAGTGGAGTT-TAAAGCTTCCC-------ATCGCCAGCAA-----------TTACGCGAAAGCTCTACCCAAACTCATCCCCTGAAAAAATA---TC-----------------------------------------CC-----TTTCCCTCTTTTTT--CCAA----CACATT---------CTT-------G------------------------------------------------------TATCCCACTTTTT--TTG----------------------------------CGCCTTCTTGGATGTGTG---ACTGCTG------------CAA--TGGCC----------------ATGGACTGTT-TAGATATCTTCTTCAATASizeHit CountTotal NormV046
Embryo		V052
Head		V120
Male body		V058
Head		M026
Head
...............................................................................GAAAGCTCTACCCAAACTCATCC............................................................................................................................................................................................................................................................................................................................231153.006.004.000.0026.00117.00
...............................................................................GAAAGCTCTACCCAAACTCATC.............................................................................................................................................................................................................................................................................................................................22182.004.006.000.0032.0040.00
...............................................................................GAAAGCTCTACCCAAACTCATCCC...........................................................................................................................................................................................................................................................................................................................24151.006.005.000.009.0031.00
...............................................................................GAAAGCTCTACCCAAACTCATCCT...........................................................................................................................................................................................................................................................................................................................24117.000.000.000.001.0016.00
...............................................................................GAAAGCTCTACCCAAACTCAT..............................................................................................................................................................................................................................................................................................................................21113.000.000.000.008.005.00
...............................................................................GAAAGCTCTACCCAAACTCATCCCT..........................................................................................................................................................................................................................................................................................................................2518.000.000.000.000.008.00
...............................................................................GAAAGCTCTACCCAAACTCACCC............................................................................................................................................................................................................................................................................................................................2316.000.000.000.000.006.00
...............................................................................GAAAGCTCTACCCAAACTCATCT............................................................................................................................................................................................................................................................................................................................2316.000.000.000.003.003.00
...............................................................................GAAAGCTCTACCCAAACTCATCCCC..........................................................................................................................................................................................................................................................................................................................2515.000.001.000.000.004.00
...............................................................................GAAAGCTCTACCCACACTCATCCC...........................................................................................................................................................................................................................................................................................................................2413.000.000.000.003.000.00
...............................................................................GAAAGCTCTACCCAAACTCATCCA...........................................................................................................................................................................................................................................................................................................................2413.000.000.000.001.002.00
...............................................................................GAAAGCTCTACCCAAACTCACCCC...........................................................................................................................................................................................................................................................................................................................2412.000.000.000.000.002.00
...............................................................................GAAAGCTCTACCCAAACTCACCCT...........................................................................................................................................................................................................................................................................................................................2412.000.000.000.000.002.00
...............................................................................GAAAGCTCTACCCAAACTCATCCCCT.........................................................................................................................................................................................................................................................................................................................2612.000.000.000.000.002.00
...............................................................................GAAAGCTCTACCCACACTCATC.............................................................................................................................................................................................................................................................................................................................2212.000.000.000.002.000.00
...............................................................................GAAAGCTCTACCCAAACTCCTC.............................................................................................................................................................................................................................................................................................................................2212.000.002.000.000.000.00
...............GTGAGTTTAGTGGAGTT-TAAAGCTTCCC-------...............................................................................................................................................................................................................................................................................................................................................................................2811.000.000.000.001.000.00
...............GTGAGTTTAGTGGAGTT-TGA..............................................................................................................................................................................................................................................................................................................................................................................................2011.000.000.000.001.000.00
...............................................................................GAACGCTCTACCCAAACTCATC.............................................................................................................................................................................................................................................................................................................................2211.000.000.000.001.000.00
...............................................................................GAAAGCTCTACCCACACTCAGCC............................................................................................................................................................................................................................................................................................................................2311.000.000.000.001.000.00
...............................................................................GAAAGCTCTACCCACACTCATCC............................................................................................................................................................................................................................................................................................................................2311.000.000.000.001.000.00
...............GTGAGTTTAGTGGAGTT-TA...............................................................................................................................................................................................................................................................................................................................................................................................1911.000.000.000.001.000.00
................................................................................AAAGCTCTACCCAAACTCATCCC...........................................................................................................................................................................................................................................................................................................................2311.000.000.000.001.000.00
...............................................................................GAAGGCTCTACTCAAACTCATCC............................................................................................................................................................................................................................................................................................................................2311.000.000.000.001.000.00
................................................................................AAAGCTCTACCCAAACTCATCC............................................................................................................................................................................................................................................................................................................................2211.000.001.000.000.000.00
...............................................................................GAAAACTCTACCCAAACTCATCCC...........................................................................................................................................................................................................................................................................................................................2411.000.001.000.000.000.00
...............................................................................GAAAGCTCTACCCAAACTCATCA............................................................................................................................................................................................................................................................................................................................2311.000.000.000.000.001.00
...............................................................................GAAAGCTCTACCCAGACTTATC.............................................................................................................................................................................................................................................................................................................................2211.000.000.000.001.000.00
...............................................................................GAAAGCTCTACCCCCACTCATC.............................................................................................................................................................................................................................................................................................................................2211.000.000.000.001.000.00
..........................................................................................................................................................................................................................................................................................................................................TTGGGCGTGTG---ACTGCTG------------.......................................................1811.000.000.000.001.000.00
...............................................................................GAAAGCTCTACCCAAACTAATCC............................................................................................................................................................................................................................................................................................................................2311.000.000.000.000.001.00
...............................................................................GAAAGCTCTACCCAAACTCACC.............................................................................................................................................................................................................................................................................................................................2211.000.000.000.000.001.00
...............................................................................AAAAGCTCTACCCAAACTCATCC............................................................................................................................................................................................................................................................................................................................2311.000.000.000.000.001.00
...............................................................................GAAAGCTCTACCCAAACACATCC............................................................................................................................................................................................................................................................................................................................2311.000.000.000.001.000.00
...............................................................................GAAAGCTCTACCCAAACTCACT.............................................................................................................................................................................................................................................................................................................................2211.000.000.000.000.001.00
................................................................................AAAGCTCTACCCACACTCATCC............................................................................................................................................................................................................................................................................................................................2211.000.000.000.001.000.00
...............................................................................GAAAACTCTACCCAAACTCATC.............................................................................................................................................................................................................................................................................................................................2211.000.000.000.001.000.00
...............................................................................GAAAGCTGTACCCAAACTCATCA............................................................................................................................................................................................................................................................................................................................2311.000.000.000.001.000.00
...............................................................................GAAAGCTCTACCCAAACTCGTCC............................................................................................................................................................................................................................................................................................................................2311.000.001.000.000.000.00
...............................................................................GAAAGCTCTACCCGAACTCATCC............................................................................................................................................................................................................................................................................................................................2311.000.001.000.000.000.00
...............................................................................GAAAGCTCTACCCAAACTCACCT............................................................................................................................................................................................................................................................................................................................2311.000.000.000.000.001.00
...............................................................................GAAAGCTCTACCCAAACCCGTC.............................................................................................................................................................................................................................................................................................................................2211.000.000.000.001.000.00
...............................................................................GAAAGCTCTACCCAGACTCATC.............................................................................................................................................................................................................................................................................................................................2211.000.000.000.001.000.00
...............................................................................GAAAGCCCTACCCAAACTCATC.............................................................................................................................................................................................................................................................................................................................2211.000.000.000.001.000.00
...............................................................................GAAAGCTCTACCCAAACTCATA.............................................................................................................................................................................................................................................................................................................................2211.000.000.000.001.000.00
...............................................................................GAAAGCTCTACCCAAACTCCTCCC...........................................................................................................................................................................................................................................................................................................................2411.000.000.000.001.000.00
...............................................................................GAAAGCTCTACCCCAACTCATC.............................................................................................................................................................................................................................................................................................................................2211.000.000.000.001.000.00
...............................................................................GAAAGCTCTACCCCAACTCCT..............................................................................................................................................................................................................................................................................................................................2111.000.000.000.001.000.00
...............................................................................GAAAGCTCTACCTAAACGCATCCC...........................................................................................................................................................................................................................................................................................................................2411.000.000.000.001.000.00
..............................................................................CGAAAGCTCTACCCAAACTCATCC............................................................................................................................................................................................................................................................................................................................2411.000.000.000.001.000.00
...............................................................................GAAAGCTCTACCCAGACTCCT..............................................................................................................................................................................................................................................................................................................................2111.000.000.000.001.000.00
................................................................................AAAGCTCTACCCAAACTCATCCCT..........................................................................................................................................................................................................................................................................................................................2411.000.000.000.000.001.00
...............................................................................GAAAGCTCTACCAAAACTCATCC............................................................................................................................................................................................................................................................................................................................2311.000.000.000.001.000.00
droEre2
CCGAACCGTATCCGGGTGAGTTTAGTGGAGTT-TAAAGCTTCCC-------ATCGCCAGCAA-----------TTACGCGAAAGCTCTACCCAAACTCATCCCCTGAAAAA-TA---TC-----------------------------------------CC-----TTTCC--CCCTTTC--CCAA----CACA-----------CTT-------G------------------------------------------------------TATCCCACTTCTC--GCG----------------------------------CGAC-TCTTGGACTTGTG---GCTGCTT------------CAC--TGG------------------CTGGACTATT-TAGATATCTTCTTCAACASizeHit CountTotal NormV040
Embryo		V060
Head		V047
Embryo		V108
Head
...............................................................................GAAAGCTCTACCCAAACTCATCCC...........................................................................................................................................................................................................................................................................................................................241570.0025.0026.000.00519.00
...............................................................................GAAAGCTCTACCCAAACTCATCC............................................................................................................................................................................................................................................................................................................................231529.0021.0019.000.00489.00
...............................................................................GAAAGCTCTACCCAAACTCATC.............................................................................................................................................................................................................................................................................................................................221217.003.0012.000.00202.00
...............................................................................GAAAGCTCTACCCAAACTCAT..............................................................................................................................................................................................................................................................................................................................21139.000.002.000.0037.00
...............................................................................GAAAGCTCTACCCAAACTCATCCT...........................................................................................................................................................................................................................................................................................................................24117.003.003.000.0011.00
................................................................................AAAGCTCTACCCAAACTCATCCC...........................................................................................................................................................................................................................................................................................................................23113.000.002.000.0011.00
...............................................................................GAAAGCTCTACCCAAACTCATCCA...........................................................................................................................................................................................................................................................................................................................24113.000.000.000.0013.00
................................................................................AAAGCTCTACCCAAACTCATCC............................................................................................................................................................................................................................................................................................................................22112.000.001.000.0011.00
...............................................................................GAAAGCTCTACCCAAACTCATCT............................................................................................................................................................................................................................................................................................................................23112.002.000.000.0010.00
...............................................................................GAAAGCTCTACCCAAACTCATCA............................................................................................................................................................................................................................................................................................................................23110.000.000.000.0010.00
...............................................................................GAAAGCTCTACCAAAACTCATCC............................................................................................................................................................................................................................................................................................................................23110.000.000.000.0010.00
...............................................................................GAAAGCTCTACCCAAACTCATCAC...........................................................................................................................................................................................................................................................................................................................2419.000.000.000.009.00
...............................................................................GAAAGCTCTACCCAAACTAATCCC...........................................................................................................................................................................................................................................................................................................................2417.000.000.000.007.00
...............................................................................GAAAGCTCTACCCAAACTCA...............................................................................................................................................................................................................................................................................................................................2017.001.000.000.006.00
...............................................................................GAAAGCTCTACACAAACTCATCCC...........................................................................................................................................................................................................................................................................................................................2416.000.000.000.006.00
...............................................................................GAAATCTCTACCCAAACTCATCCC...........................................................................................................................................................................................................................................................................................................................2416.001.000.000.005.00
...............................................................................GAAAGCTCTACCAAAACTCATCCC...........................................................................................................................................................................................................................................................................................................................2415.000.000.000.005.00
...............................................................................GAAAGCTCTACCCAAACTCATAC............................................................................................................................................................................................................................................................................................................................2314.000.000.000.004.00
...............................................................................GAAAGCTCTACCCAAACTCATT.............................................................................................................................................................................................................................................................................................................................2214.000.000.000.004.00
...............................................................................GAAAGCTCTACCCAAACTCATCCCC..........................................................................................................................................................................................................................................................................................................................2514.000.000.000.004.00
...............................................................................GAAAGCTCTACACAAACTCATCC............................................................................................................................................................................................................................................................................................................................2314.000.000.000.004.00
...............................................................................GAAAGCTCTACCCAAACTCATCG............................................................................................................................................................................................................................................................................................................................2314.000.000.000.004.00
................................................................................AAAGCTCTACCCAAACTCATC.............................................................................................................................................................................................................................................................................................................................2113.000.000.000.003.00
...............................................................................GAAAGCTCTACCCAAACTCACCCC...........................................................................................................................................................................................................................................................................................................................2413.001.000.000.002.00
...............GTGAGTTTAGTGGAGTT-TAAAGCTTCC.......................................................................................................................................................................................................................................................................................................................................................................................2713.000.000.000.003.00
...............................................................................GAAAGCTCTACCCACACTCATCCC...........................................................................................................................................................................................................................................................................................................................2413.000.002.000.001.00
...............................................................................GAAAGCTCTACTCAAACTCATCC............................................................................................................................................................................................................................................................................................................................2313.000.000.000.003.00
...............................................................................GAAAGCTCTACCCAAACTCATCCCA..........................................................................................................................................................................................................................................................................................................................2513.000.000.000.003.00
...............................................................................GAAAGCTATACCCAAACTCATCCC...........................................................................................................................................................................................................................................................................................................................2413.000.000.000.003.00
...............................................................................GAAATCTCTACCCAAACTCATC.............................................................................................................................................................................................................................................................................................................................2213.000.000.000.003.00
...............................................................................GAAAGCTCTACCCAAAATCATCC............................................................................................................................................................................................................................................................................................................................2313.000.000.000.003.00
droEug1
CTGAACCGTATCCGGGTGAGTTTAGTGGAGTT-TAATGCTTCCT-------ATCGCCAGCAA-----------TTACGCGAAAGCTCTACCCAAACTCATCCCCTGAACA----TTTTC-----------------------------------------CT-----ACCCTC------TCCTCCAA--------------C---T-TTGC--------------------------------------------------TTT----------ACTATTCCTA--CCG----------------------------------CGACTTTTTGGATTTTTG---ACTGGTT------------AAA--TGT------------------CTGGCCTGTA-CAGACATCTTCTTTAACASizeHit CountTotal Norm
droBia1
CGGAGCCGTATCCGGGTGAGTTTAGTGGAGTT-TAAAGC---CC-------ATCGCCTGCAA-----------TTACGCGAAAGCTCTACCCAAACTCATCCCCTGAAAA----ATTGT-----------------------------------------CC-----TCCCTC------TCC--CC-CCAAAA--------C---TTTT-------A------------------------------------------------------CCATCTTTTTTCA--CCG----------------------------------CAACTTCTTGGATTTTTG---ACTGGTT------------TGA--TGG------------------CTGGCCTGTT-CAGATATCTTCTTTAACASizeHit CountTotal Norm
droTak1
CCGAACCGTATCCGGGTGAGTTTAGTGGAGTT-TAAAGCTTCCC-------ATCGCCGGCAA-----------TTACGCGAAAGCTCTACCCAAACTCATCCCCCAAAAAA-CATTTTC-----------------------------------------CC-----TCCCT---CTTTTC--CCC-----CAAA-----AAAAAT---------------------------------------------------ATTTATTTATCA--TATGCAATATCAT--ACG----------------------------------CAACTTCTTGGACTTGTA---ACTGTTT------------T----TGGCC--------------AACTGGCCTGTT-CAGATATCTTCTTCAATASizeHit CountTotal Norm
droEle1
CGGAGCCGTATCCGGGTGAGTTTAGTGGAGTT-TAATGCTTCCC-------ATCGCCGGCAA-----------TTACGCGAAAGCTCTACCCAAACTCATCCCCTCAAAA----TCTCT-----------------------------------------CT------CC----CCCTCTC--CCGT----T--G-----AT---T-CT--ATCCCATT-------------------------------------------TC----------TCCATTTCAC--CTG----------------------------------CGACAACTGGGATTTGTG---ACTGATT------------TAA--TGC------------------CTGACTTGCT-CAGATATCTTCTTCAATASizeHit CountTotal Norm
droRho1
CGGAGCCGTATCCGGGTGAGTTTAGTGGAGTT-TAATGCTTCCC-------ATCGCCGACAA-----------TGACGCGAAAGCTCTACCCAAACTCATCCCCTGAAAA----TTTCT-----------------------------------------CT------CCCTC------TC--CCTT----T--G-----AT---T-CT-----------------------------------------------------GT----------GATATTTCTC--CTG----------------------------------CGATGTCTTGGATTTCTG---ACTGATT------------TAA--TGC------------------CTGACTTGTG-CAGATATCTTCTTCAATASizeHit CountTotal Norm
droFic1
CGGAACCGTATCCGGGTGAGTTTAGTGGAGTT-TAATGCTTCCC-------ATCGCCGACAA-----------TTACGCGAAAGCTCTACCCAAACTCATCCCCTCAAAA----AATAT-----------------------------------------CT------ACCCC--TCTTT---CCTA----CAAC-------------------------------------------------------------------TC------------TATTTCTATTTTG----------------------------------CTGCTTCCTGGATTTGTG---ACTGGTT------------TAA--TGA------------------CTGGTTTAAT-CAGATATCTTCTTCAACASizeHit CountTotal Norm
droKik1
CGGAGCCCTATCCGGGTGAGTTTAGTGGAGTT-TAAAGCCTCCA-------ATCGCCGGCAA-----------TTGCGCGAAAGCTCTACCCAAACTCATCCCCTGAAAA----TTTCT-----------------------------------------AC------CCTAC------TC--CCT-GT------------A---T-TT--ATCC----------------------------------------------CTC------------GATTTCTC--TGG----------------------------------TGAT-----------------------------------GTCCTCTGGCTACTGAATTGAAATGAACTGGCTTGTT-CAGATATCTTCTTCAATASizeHit CountTotal Norm
droAna3
CCGAGCCGTATCCGGGTGAGTTTAGTGGAGTT-TAATGCTTCTC-------ATCGCCGGCCC-----------TTTCGCGAAAGCTCTACCCAAACTCATCCCCTGAAAA----CCTTT-----------------------------------------TT------TCCCC-------------C----C--ATTTTCTT-------CC--------------------------------------------------CTT----------ACTGTTT-----TTGCACTTTGGAT--------------------TTTA--------------TGTG---GC----C------------TGC--TGG------------------ATGGCTTCTT-CAGATATATTTTTCAACASizeHit CountTotal NormV105
Male body		V106
Head		V055
Unknown		V039
Embryo
...............................................................................GAAAGCTCTACCCAAACTCATCC............................................................................................................................................................................................................................................................................................................................23141.001.0036.002.002.00
...............................................................................GAAAGCTCTACCCAAACTCATC.............................................................................................................................................................................................................................................................................................................................22138.000.0031.006.001.00
...............................................................................GAAAGCTCTACCCAAACTCAT..............................................................................................................................................................................................................................................................................................................................21137.001.0027.009.000.00
...............................................................................GAAAGCTCTACCCAAACTCATCCC...........................................................................................................................................................................................................................................................................................................................24122.000.0021.001.000.00
...............................................................................GAAAGCTCTACCCAAACTCA...............................................................................................................................................................................................................................................................................................................................2016.000.004.002.000.00
...............................................................................GAAAGCTCTACCCAAACTCATCT............................................................................................................................................................................................................................................................................................................................2315.000.004.001.000.00
...............................................................................GAAAGCTCTACCCAAACTCATCCA...........................................................................................................................................................................................................................................................................................................................2413.000.003.000.000.00
...............................................................................GAAAGCTCTACCCAAACTC................................................................................................................................................................................................................................................................................................................................1912.000.002.000.000.00
...............................................................................GAAAGCTCTACCCAAACTCATCCCC..........................................................................................................................................................................................................................................................................................................................2512.000.001.000.001.00
...............................................................................GAAAGCTCTACCAAAACTCATCC............................................................................................................................................................................................................................................................................................................................2312.000.002.000.000.00
...............................................................................GAAATCTCTACCCAAACTCATC.............................................................................................................................................................................................................................................................................................................................2212.000.002.000.000.00
...............................................................................GAAAGCTATACCCAAACTCATCC............................................................................................................................................................................................................................................................................................................................2311.000.001.000.000.00
...............................................................................GAAAGCTCTACCCAAACTCATCCCT..........................................................................................................................................................................................................................................................................................................................2511.000.000.001.000.00
................................................................................AAAGCTCTACCCAAACTCATCCC...........................................................................................................................................................................................................................................................................................................................2311.000.000.000.001.00
...............................................................................GAAAGCTCTACACAAACTCATCCC...........................................................................................................................................................................................................................................................................................................................2411.000.001.000.000.00
...............................................................................GAAAGCTCTACCAAAACTCATC.............................................................................................................................................................................................................................................................................................................................2211.000.001.000.000.00
................................................................................AAAGCTCTACCCAAACTCATCC............................................................................................................................................................................................................................................................................................................................2211.000.001.000.000.00
...............................................................................AAAAGCTCAACCCAAACTCAT..............................................................................................................................................................................................................................................................................................................................2111.000.000.001.000.00
...............................................................................GAAAGCTCTACCCAAACCCATCC............................................................................................................................................................................................................................................................................................................................2311.000.000.001.000.00
...............................................................................GAAAGCTCTACCCAAACTCATT.............................................................................................................................................................................................................................................................................................................................2211.000.001.000.000.00
...............................................................................GAAAGCTCTACCCAAACTCATCA............................................................................................................................................................................................................................................................................................................................2311.000.001.000.000.00
.................................................................................................................................................................................................................................................................................................................................................TGTG---GC----C------------TGC--TTG------------------GTGG.........................1711.000.000.001.000.00
...............................................................................GAAAGCTCTACCCAAACTTATC.............................................................................................................................................................................................................................................................................................................................2211.000.001.000.000.00
...............................................................................GAAAGCTCTACCCAAAATCATCC............................................................................................................................................................................................................................................................................................................................2311.000.001.000.000.00
...............................................................................GAAAGCTCTACCCAAACTCAGC.............................................................................................................................................................................................................................................................................................................................2211.000.000.001.000.00
....................................................................................................................................................................................................TTTCTT-------CC--------------------------------------------------xxT----------ACTGTTT-----TT..................................................................................................................................1811.000.000.000.001.00
...............................................................................GAAAGCTCTACCCAAACTCATCCCA..........................................................................................................................................................................................................................................................................................................................2511.000.001.000.000.00
...............................................................................GAAAGCTATACCCAAACTCAT..............................................................................................................................................................................................................................................................................................................................2111.000.001.000.000.00
...............................................................................GAAAGCTTTACCCAAACTCAT..............................................................................................................................................................................................................................................................................................................................2111.000.000.001.000.00
...............................................................................GAAAGCTCTGCCCAAACTCATC.............................................................................................................................................................................................................................................................................................................................2211.000.001.000.000.00
...............................................................................GAAAACTCTACCCAAACTCATCC............................................................................................................................................................................................................................................................................................................................2311.000.000.001.000.00
...............................................................................GAAAGCTCTACCCAAACTCGT..............................................................................................................................................................................................................................................................................................................................2111.000.000.001.000.00
...............GTGAGTTTAGTGGAGTT-TAAT.............................................................................................................................................................................................................................................................................................................................................................................................2111.000.001.000.000.00
...............................................................................GAAAGATCTTCCCAAACTCATCCC...........................................................................................................................................................................................................................................................................................................................2411.000.000.001.000.00
................................................................................AAGGGTCTACCCAAACTCATCC............................................................................................................................................................................................................................................................................................................................2211.000.000.001.000.00
...............................................................................GAAAGCTCTACACAAACTCAT..............................................................................................................................................................................................................................................................................................................................2111.000.001.000.000.00
droBip1
CCGAACCGTATCCGGGTGAGTTTAGTGGAGTT-TAATGCTTCTC-------ATCGCCGGCCC-----------TTTCGCGAAAGCTCTACCCAAACTCATCCCCCGAAAA----AATAC-----------------------------------------CT-----TCTTTCCCC--------CC--------ATTTTCTT-------CC--------------------------------------------------TTT----------ACTGTTT-----TTGCTTTTCGGAT--------------------AT--------------TTTGTG---GCCGCTT------------CGA--TTA----------------------CTTGTT-CAGATATATTCTTCAACASizeHit CountTotal Norm
dp4
CCGAACCGTATCCGGGTGAGTTTTGTGGAGTT-TAAAGTTAACA-------ATCGCCGACAATCA------AATTACGCGAAAGCTCTACCCAAACTCATCCCTCACAAT------TGT-----------------------------------------TTTCCTC------------CCC--CA-CCAA---A-----AA---T---------------------------------------------------CTCCCTC-ACCCTGTAAATCA------------------------------------------CTA--------------TGCG---GCTGCTG---------CTGGTATTCGGC-----------------TTGGACTGTTCCAGATATCTTCTTCAATASizeHit CountTotal NormV112
Male body		V043
Embryo		V051
Head		M022
Male body
...............................................................................GAAAGCTCTACCCAAACTCATC.............................................................................................................................................................................................................................................................................................................................22126.000.006.0020.000.00
...............................................................................GAAAGCTCTACCCAAACTCATCC............................................................................................................................................................................................................................................................................................................................23125.001.008.0016.000.00
...............................................................................GAAAGCTCTACCCAAACTCATCCC...........................................................................................................................................................................................................................................................................................................................2419.001.008.000.000.00
................................................................................AAAGCTCTACCCAAACTCATCCC...........................................................................................................................................................................................................................................................................................................................2314.000.004.000.000.00
...............GTGAGTTTAGTGGAGTT-TA...............................................................................................................................................................................................................................................................................................................................................................................................1913.003.000.000.000.00
................................................................................AAAGCTCTACCCAAACTCATCC............................................................................................................................................................................................................................................................................................................................2213.000.001.002.000.00
...............................................................................GAAAGCTCTACCCAAACTCAT..............................................................................................................................................................................................................................................................................................................................2112.000.000.002.000.00
...............................................................................GAAAGCTCTACCCAAACTCATCT............................................................................................................................................................................................................................................................................................................................2312.000.000.002.000.00
...............................................................................GAAAGCTCTACCCAAACTCATCCT...........................................................................................................................................................................................................................................................................................................................2411.000.001.000.000.00
...........................................................................TCGCGAAAGCTCTACCCAAACTCATC.............................................................................................................................................................................................................................................................................................................................2611.000.001.000.000.00
...............................................................................GAAAACTCTACCCAAACTCATCCC...........................................................................................................................................................................................................................................................................................................................2411.000.000.001.000.00
...............................................................................GAAAGCTCTACCCAAACTCATCA............................................................................................................................................................................................................................................................................................................................2311.000.000.001.000.00
...............................................................................GAAAGCTCTACCCAAACTCACCC............................................................................................................................................................................................................................................................................................................................2311.000.000.001.000.00
...........................................................................................CAAACTCATCCCTCCCAGT------T.............................................................................................................................................................................................................................................................................................................2011.000.001.000.000.00
...............................................................................GAAAGCTCTACCCAAACTCAGCC............................................................................................................................................................................................................................................................................................................................2311.000.000.001.000.00
...............GTGAGTTTTGTGGAGTT-T................................................................................................................................................................................................................................................................................................................................................................................................1811.000.000.001.000.00
................................................................................AAAGCTCTACCCAAACTCAACC............................................................................................................................................................................................................................................................................................................................2211.000.000.001.000.00
...............................................................................GAAAGCTCTACCCAAACTCATTTC...........................................................................................................................................................................................................................................................................................................................2411.000.000.001.000.00
...............................................................................GAAAGCTCTACCCAGACTCATCC............................................................................................................................................................................................................................................................................................................................2311.000.001.000.000.00
................................................................................AAAGCGCGACCCAAACTCATCC............................................................................................................................................................................................................................................................................................................................2211.000.000.001.000.00
................................................................................AAAGATCTACCCAAACTCATCC............................................................................................................................................................................................................................................................................................................................2211.000.001.000.000.00
...............................................................................GAAAGCTCTACCCAGACTCATCCC...........................................................................................................................................................................................................................................................................................................................2411.000.001.000.000.00
droPer1
CCGAACCGTATCCGGGTGAGTTTTGTGGAGTT-TAAAGTTTACA-------ATCGCCGACAATCA------AATTACGCGAAAGCTCTACCCAAACTCATCCCTCACAAT------TGT-----------------------------------------TTTCCTC------------CCC--CA-CCAA---A-----AA---T---------------------------------------------------CTCCCTC-TCCCTGTAAATCA------------------------------------------CTA--------------TGCG---GCTGCTG---------CTGGTATTCGGC-----------------TTGGACTGTTCCAGATATCTTCTTCAATASizeHit CountTotal NormV111
Male body		V042
Embryo		V050
Head		V057
Head		M021
Embryo
...............................................................................GAAAGCTCTACCCAAACTCATC.............................................................................................................................................................................................................................................................................................................................22173.001.001.0029.0042.000.00
...............................................................................GAAAGCTCTACCCAAACTCATCC............................................................................................................................................................................................................................................................................................................................23140.000.002.0017.0017.004.00
...............................................................................GAAAGCTCTACCCAAACTCATCT............................................................................................................................................................................................................................................................................................................................23112.000.001.004.007.000.00
...............................................................................GAAAGCTCTACCCAAACTCAT..............................................................................................................................................................................................................................................................................................................................21112.000.000.007.005.000.00
...............................................................................GAAAGCTCTACCCAAACTCATCCC...........................................................................................................................................................................................................................................................................................................................2418.000.000.002.003.003.00
...............................................................................GAAAGCTCTACCCAAACTCATCCT...........................................................................................................................................................................................................................................................................................................................2416.000.000.002.004.000.00
...............................................................................GAAAGCTCTACCCACACTCATC.............................................................................................................................................................................................................................................................................................................................2214.000.000.001.003.000.00
...............................................................................GAAAGCTCTACCCAAACTCATCCCT..........................................................................................................................................................................................................................................................................................................................2513.000.000.000.000.003.00
...............................................................................GAAAGCTCTACCCAAACTCATCA............................................................................................................................................................................................................................................................................................................................2313.000.000.002.001.000.00
...............GTGAGTTTAGTGGAGTT-TA...............................................................................................................................................................................................................................................................................................................................................................................................1912.002.000.000.000.000.00
...............GTGAGTTTTGTGGAGTT-T................................................................................................................................................................................................................................................................................................................................................................................................1812.000.000.001.001.000.00
...............GTGAGTTTTGTGGAGTT-TAAAGT...........................................................................................................................................................................................................................................................................................................................................................................................2312.000.000.000.002.000.00
...............................................................................GAAAGATCTACCCAAACTCATC.............................................................................................................................................................................................................................................................................................................................2212.000.000.000.002.000.00
...............................................................................GAAAGCTCTACCCAAACTCACCT............................................................................................................................................................................................................................................................................................................................2311.000.000.000.001.000.00
...............................................................................GAAAGCTCTACCCAAACTCATCCCA..........................................................................................................................................................................................................................................................................................................................2511.000.000.000.001.000.00
...............................................................................GAAAGCTCGACCCAAACTCATCC............................................................................................................................................................................................................................................................................................................................2311.000.000.000.001.000.00
...............................................................................GAAAGCTCTACCCAAACTCACCCT...........................................................................................................................................................................................................................................................................................................................2411.000.000.000.000.001.00
................................................................................AAAGCTCTACCCAAACTCATCC............................................................................................................................................................................................................................................................................................................................2211.000.000.001.000.000.00
...............................................................................GAAAGCTCTACCCAAACTCATCCG...........................................................................................................................................................................................................................................................................................................................2411.000.000.000.001.000.00
...............GTGAGTTTTGTGGAGTT-TAAAGTTT.........................................................................................................................................................................................................................................................................................................................................................................................2511.000.000.000.001.000.00
...............................................................................GAACGCTCTACCCAAACTCATCC............................................................................................................................................................................................................................................................................................................................2311.000.000.000.001.000.00
...............GTGAGTTTTGTGGAGTT-TAAA.............................................................................................................................................................................................................................................................................................................................................................................................2111.000.000.000.001.000.00
...............................................................................GAAAGCTCTACCCAAACTCATT.............................................................................................................................................................................................................................................................................................................................2211.000.000.000.001.000.00
.................................................................................................................................................................................................................................................................................................................................................TGCT---GCTGCTG---------CTGGTAT...................................................18150.070.000.070.000.000.00
...............................................................................GAAAGCTCTACCCAAACTCAGCT............................................................................................................................................................................................................................................................................................................................2311.000.000.000.001.000.00
...............................................................................GAAAGCTATATCCAAACTCATC.............................................................................................................................................................................................................................................................................................................................2211.000.000.000.001.000.00
...............................................................................GAAAGCTCTACCCAAACTCACCC............................................................................................................................................................................................................................................................................................................................2311.000.000.000.000.001.00
...............................................................................GAAAGATCTACCCAAACCCATCC............................................................................................................................................................................................................................................................................................................................2311.000.000.000.001.000.00
...............................................................................GAAAGCTCTACCCAAACTCATCCCG..........................................................................................................................................................................................................................................................................................................................2511.000.000.000.000.001.00
...............................................................................GAAAGCTCTACCACAACTCATC.............................................................................................................................................................................................................................................................................................................................2211.000.000.000.001.000.00
...............................................................................GAAAGGTCTACCCAAACTCAAC.............................................................................................................................................................................................................................................................................................................................2211.000.000.000.001.000.00
...............................................................................GCAAGCTCTACTCAAACTCATC.............................................................................................................................................................................................................................................................................................................................2211.000.000.001.000.000.00
...............................................................................GAAAGCTCTACCCACACTCATCCC...........................................................................................................................................................................................................................................................................................................................2411.000.000.000.001.000.00
...............................................................................GAAAGCTCTACCAAAACTCATC.............................................................................................................................................................................................................................................................................................................................2211.000.000.000.001.000.00
.........................................................................................................................................................................................................................................................................................................................................................CTGCTG---------CTGCTCTTCGGC-----------------.............................1870.140.000.000.000.000.14
...............................................................................GAAAGCTCTACCCACACTCAT..............................................................................................................................................................................................................................................................................................................................2111.000.000.000.001.000.00
................................................................................AAAGCTCTACCGAAACTCATCC............................................................................................................................................................................................................................................................................................................................2211.000.000.001.000.000.00
...............................................................................GAAAGCTCTACCCAGACTCATCC............................................................................................................................................................................................................................................................................................................................2311.000.000.000.001.000.00
...............................................................................GAAAGCACTACCCAAACTCATCCC...........................................................................................................................................................................................................................................................................................................................2411.000.000.000.001.000.00
...............................................................................GAAAGCTCTACCCCAACTCATC.............................................................................................................................................................................................................................................................................................................................2211.000.000.000.001.000.00
...............................................................................GAAAGCTCTACCCAAAATCTTCC............................................................................................................................................................................................................................................................................................................................2311.000.000.000.001.000.00
...............................................................................GAAAGATCTACCCAAACTCATCC............................................................................................................................................................................................................................................................................................................................2311.000.000.001.000.000.00
..................................................................................................................................................................................................................................................................................ATGA------------------------------------------CTA--------------TGCA---GCTGCTG---------CT........................................................2020.500.000.000.000.000.50
...............................................................................GAAAGCTCTACCCCAACTCAC..............................................................................................................................................................................................................................................................................................................................2111.000.000.001.000.000.00
...............................................................................GAACGCTCTACCCAACCTCAT..............................................................................................................................................................................................................................................................................................................................2111.000.000.000.001.000.00
...............................................................................GAAAGCTCTACCCTAACTCATCC............................................................................................................................................................................................................................................................................................................................2311.000.000.000.001.000.00
................................................................................AAAGCTGTACCCAAACTCATCCC...........................................................................................................................................................................................................................................................................................................................2311.000.000.000.001.000.00
...............................................................................GAAAACTATACCCAAACTCATCC............................................................................................................................................................................................................................................................................................................................2311.000.000.000.001.000.00
................................................................................AAAGATCTACCCAAACTCATCC............................................................................................................................................................................................................................................................................................................................2211.000.000.000.001.000.00
................................................................................AAAGCTCTACCCAAACTCATCCC...........................................................................................................................................................................................................................................................................................................................2311.000.000.000.001.000.00
droWil1
CTGAACCATATCCAGGTGAGTTTTGTAGAGTTTTAAAGCTATAA-------ATCGCCGGTAAATAGACGTTAAAGACGCGAAAGCTCTACCCAAACTCAC-CCCGGAAAT-----TTTT-----------------------------------------TT-----ATTCTC-TTTTTTC--CCAA----CAAA-----------AAT-------A------------------------------------------------------ATGACAATTT----------------------------------------------ATCTTGGAAATTTGGTAAACACTT----------T-AAA--TAA------------------TTGTATATAT-TAGATATATTTTTCAATASizeHit CountTotal NormV117
Male body		V118
Embryo		V119
Head		M020
Head
...............................................................................GAAAGCTCTACCCAAACTCAC-CC...........................................................................................................................................................................................................................................................................................................................2316992.002.0060.00282.006648.00
................................................................................AAAGCTCTACCCAAACTCAC-CC...........................................................................................................................................................................................................................................................................................................................221490.000.0014.0086.00390.00
...............................................................................GAAAGCTCTACCCAAACTCAC-CCT..........................................................................................................................................................................................................................................................................................................................241438.000.001.002.00435.00
...............................................................................GAAAGCTCTACCCAAACTCAC-C............................................................................................................................................................................................................................................................................................................................221438.002.002.0023.00411.00
...............................................................................GAAAGCTCTACCCAAACTCAC-CT...........................................................................................................................................................................................................................................................................................................................231429.002.007.0022.00398.00
...............................................................................GAAAGCTCTACCCAAACTCAC-CCC..........................................................................................................................................................................................................................................................................................................................241405.001.006.0018.00380.00
................................................................................AAAGCTCTACCCAAACTCAC-CCT..........................................................................................................................................................................................................................................................................................................................231225.000.003.006.00216.00
................................................................................AAAGCTCTACCCAAACTCAC-CCC..........................................................................................................................................................................................................................................................................................................................231191.000.004.0040.00147.00
...............................................................................GAAAGCTCTACCCAAACTCAC-CCA..........................................................................................................................................................................................................................................................................................................................241107.000.000.004.00103.00
...............GTGAGTTTTGTAGAGTTTTAAAGC...........................................................................................................................................................................................................................................................................................................................................................................................24197.000.005.007.0085.00
................................................................................AAAGCTCTACCCAAACTCAC-C............................................................................................................................................................................................................................................................................................................................21170.001.000.0014.0055.00
................................................................................AAAGCTCTACCCAAACTCAC-CT...........................................................................................................................................................................................................................................................................................................................22167.001.001.002.0063.00
..............................................................................CGAAAGCTCTACCCAAACTCAC-CC...........................................................................................................................................................................................................................................................................................................................24155.000.001.005.0049.00
...............................................................................GAAAGCTCTACCCAAACTCAC-CCCT.........................................................................................................................................................................................................................................................................................................................25125.000.000.000.0025.00
...............GTGAGTTTTGTAGAGTTTTAAAGCT..........................................................................................................................................................................................................................................................................................................................................................................................25122.000.008.007.007.00
...............................................................................GAAAGCTCTACCAAAACTCAC-CC...........................................................................................................................................................................................................................................................................................................................23120.000.000.000.0020.00
.................................................................................AAGCTCTACCCAAACTCAC-CCT..........................................................................................................................................................................................................................................................................................................................22119.000.000.000.0019.00
................................................................................AAAGCTCTACCCAAACTCAC-CCA..........................................................................................................................................................................................................................................................................................................................23119.000.001.001.0017.00
..............................................................................CGAAAGCTCTACCCAAACTCAC-CT...........................................................................................................................................................................................................................................................................................................................24118.001.001.002.0014.00
...............................................................................GAAAGCTCTACCGAAACTCAC-CC...........................................................................................................................................................................................................................................................................................................................23113.000.000.000.0013.00
...............................................................................GAAAGCTCTACCCAAACTCAC-CCG..........................................................................................................................................................................................................................................................................................................................24113.000.000.000.0013.00
.................................................................................AAGCTCTACCCAAACTCAC-CC...........................................................................................................................................................................................................................................................................................................................21112.000.000.002.0010.00
...............................................................................GAAAGCTCTACCCAAACTCAC-CCTT.........................................................................................................................................................................................................................................................................................................................25112.000.000.000.0012.00
...............................................................................GAAGGCTCTACCCAAACTCAC-CC...........................................................................................................................................................................................................................................................................................................................23111.000.000.000.0011.00
...............................................................................GAAAGCTCTACCCAAACTCAC-CTT..........................................................................................................................................................................................................................................................................................................................24110.000.000.000.0010.00
.......................................TATAA-------ATCGCCGGTAAATAGACGTT...........................................................................................................................................................................................................................................................................................................................................................2519.000.000.000.009.00
...............................................................................GAAATCTCTACCCAAACTCAC-CC...........................................................................................................................................................................................................................................................................................................................2318.000.000.000.008.00
................................................................................AAAGCTCTACCCAAACTCAC-CCG..........................................................................................................................................................................................................................................................................................................................2318.000.000.000.008.00
..............................................................................CGAAAGCTCTACCCAAACTCAC-C............................................................................................................................................................................................................................................................................................................................2318.000.000.000.008.00
...............................................................................AAAAGCTCTACCCAAACTCAC-CC...........................................................................................................................................................................................................................................................................................................................2317.000.001.001.005.00
...............................................................................GAAAGCTCTACACAAACTCAC-CC...........................................................................................................................................................................................................................................................................................................................2317.000.000.001.006.00
................................................................................AAAGCTCTACCCAAACTCAC-CCCT.........................................................................................................................................................................................................................................................................................................................2417.000.000.000.007.00
.................................................................................AAGCTCTACCCAAACTCAC-CCC..........................................................................................................................................................................................................................................................................................................................2216.000.001.001.004.00
........................................................CGGTAAATAGACGTTAAAGACGC...................................................................................................................................................................................................................................................................................................................................................2315.000.001.004.000.00
................................................................................AAAGCTCTACCCAAACTCAC-CCTT.........................................................................................................................................................................................................................................................................................................................2415.000.000.000.005.00
...............................................................................GAAAGCTCTATCCAAACTCAC-CC...........................................................................................................................................................................................................................................................................................................................2315.000.000.000.005.00
...............................................................................GAAAGCTCTACCCAAACTCAC-CA...........................................................................................................................................................................................................................................................................................................................2315.000.000.002.003.00
.......................................................CCGGTAAATAGACGTTAAAGACGCG..................................................................................................................................................................................................................................................................................................................................................2515.000.003.001.001.00
...............................................................................GAAAGCTCTACCTAAACTCAC-CC...........................................................................................................................................................................................................................................................................................................................2315.000.000.001.004.00
.................................................................................AAGCTCTACCCAAACTCAC-C............................................................................................................................................................................................................................................................................................................................2014.000.000.000.004.00
...............................................................................GAAAGCTCTACCCAAACTCGC-CC...........................................................................................................................................................................................................................................................................................................................2314.000.000.000.004.00
...............................................................................GAAAGCTCTACCCAAACTCAT-C............................................................................................................................................................................................................................................................................................................................2214.000.004.000.000.00
...............................................................................GAAAGCTCTACCCAAACTCAC-AC...........................................................................................................................................................................................................................................................................................................................2314.000.000.000.004.00
...............................................................................GAAAGCTCTACCCAAACTCAT-CC...........................................................................................................................................................................................................................................................................................................................2314.000.000.001.003.00
...............................................................................GAAAGCTCTACCCAAACTCAC-.............................................................................................................................................................................................................................................................................................................................2114.000.001.000.003.00
...............................................................................GAAAGCTCTGCCCAAACTCAC-CC...........................................................................................................................................................................................................................................................................................................................2314.000.000.000.004.00
...............................................................................GAAAGCTCTAACCAAACTCAC-CC...........................................................................................................................................................................................................................................................................................................................2314.000.000.003.001.00
..................................................................................AGCTCTACCCAAACTCAC-CCTT.........................................................................................................................................................................................................................................................................................................................2214.000.000.000.004.00
...............................................................................GGAAGCTCTACCCAAACTCAC-CC...........................................................................................................................................................................................................................................................................................................................2314.000.000.000.004.00
...............................................................................GAGAGCTCTACCCAAACTCAC-CC...........................................................................................................................................................................................................................................................................................................................2314.000.000.000.004.00
...............................................................................GAAAGCTCTACCCAAACTCAC-CG...........................................................................................................................................................................................................................................................................................................................2314.000.000.000.004.00
...............................................................................GAAAGCTCTACTCAAACTCAC-CC...........................................................................................................................................................................................................................................................................................................................2313.000.001.002.000.00
.................................................................................AAGCTCTACCCAAACTCAC-CCCT.........................................................................................................................................................................................................................................................................................................................2313.000.000.000.003.00
...............................................................................GAAAGCTCTACCCAAACTCAA-CC...........................................................................................................................................................................................................................................................................................................................2313.000.000.000.003.00
...............................................................................GAAGGCTCTACCCAAACTCAC-CCC..........................................................................................................................................................................................................................................................................................................................2413.000.000.000.003.00
..................................................................................AGCTCTACCCAAACTCAC-CCT..........................................................................................................................................................................................................................................................................................................................2113.000.000.000.003.00
................................................................................AAAGCTCTACCCAAACTCAC-CTT..........................................................................................................................................................................................................................................................................................................................2313.000.000.000.003.00
...............GTGAGTTTTGTAGAGTTTTAAAG............................................................................................................................................................................................................................................................................................................................................................................................2313.000.001.001.001.00
...............................................................................GAAACCTCTACCCAAACTCAC-CC...........................................................................................................................................................................................................................................................................................................................2313.000.000.001.002.00
droVir3
CCGAGCCGTATCCGGGTGAGTTTCGTAGAGTT-TAAAGCTCTTA--CTTTGCTCGCTGGCAC----GC-----CCACGCGAAAGCTCTACCCAAACTCAC--TATGCAAA----CCCCCAACCCATACCCAAATCCA--------------------------------------------------------------------------------------------TGCTCCTTGTCTCTCTCTCTCTCTCTTTCTCTCTC----------------------TCT----------CTCTCTCTCTCCACTTTTGTTTCA-----------------------TGCTGCACTCGC---TGGCTCTTG--------------------TTGAATGTT-CAGACATATTCTTTAATASizeHit CountTotal NormV116
Male body		V053
Unknown		V047
Embryo		M027
Male body		M028
Head
...............................................................................GAAAGCTCTACCCAAACTCAC--T...........................................................................................................................................................................................................................................................................................................................22155.000.0018.000.002.0035.00
...............................................................................GAAAGCTCTACCCAAACTCAC--TT..........................................................................................................................................................................................................................................................................................................................23116.000.008.000.001.007.00
...............................................................................GAAAGCTCTACCCAAACTCAC--TA..........................................................................................................................................................................................................................................................................................................................23113.000.0012.000.000.001.00
...............................................................................GAAAGCTCTACCCAAACTCAC--TAT.........................................................................................................................................................................................................................................................................................................................2418.000.007.000.000.001.00
...............................................................................GAAAGCTCTACCCAAACTCAC--C...........................................................................................................................................................................................................................................................................................................................2214.000.000.000.000.004.00
...............................................................................GAAAGCTCTACCCAAACTCAC--............................................................................................................................................................................................................................................................................................................................2113.000.002.000.000.001.00
...............................................................................GGAAGCTCTACCCAAACTCAC--T...........................................................................................................................................................................................................................................................................................................................2211.000.001.000.000.000.00
...............................................................................GAAAGCTCTACCCAAACTCTC--TA..........................................................................................................................................................................................................................................................................................................................2311.000.001.000.000.000.00
...............................................................................GAAAGCTCTACCCAACCTCAC--TT..........................................................................................................................................................................................................................................................................................................................2311.000.001.000.000.000.00
............................................................................................................................................................................................................................................TGTCTCTCTCTCTCTATCT...................................................................................................................................................................19350.030.000.030.000.000.00
...............................................................................GAAAGCTCTATCCAAACTCGC--T...........................................................................................................................................................................................................................................................................................................................2211.000.001.000.000.000.00
...............................................................................GAAAGCGCTACCCAAACTCAC--T...........................................................................................................................................................................................................................................................................................................................2211.000.000.000.000.001.00
...............................................................................GAAAGCTCTACCCAAACTCAC--TAA.........................................................................................................................................................................................................................................................................................................................2411.000.000.000.000.001.00
...............................................................................GAAAGCTCTACCCAAACTCAC--TG..........................................................................................................................................................................................................................................................................................................................2311.000.001.000.000.000.00
...............................................................................GAAAGCTCTACCCAAACTCCC--TT..........................................................................................................................................................................................................................................................................................................................2311.000.000.001.000.000.00
...................................................................................................................................................................................................................................................................CTCTC----------------------TCT----------CTCTCTCGCTCC...........................................................................................................20440.020.000.020.000.000.00
...............................................................................GAAAGCTCTACCCAAACTCCT--............................................................................................................................................................................................................................................................................................................................2111.001.000.000.000.000.00
...............................................................................GAAAGCTCCACCCAAACTCAC--C...........................................................................................................................................................................................................................................................................................................................2211.000.001.000.000.000.00
droMoj3
CCGAGCCCTATCCCGGTGAGTTTCGTAGAGTT-TAAAGCTCACA--CTTTGCTCGCCAACAA----GC-----GCACGCGAAAGCTCTACCCAAACTCAC--TATGAAAA----TCTATACTCCAAACCCGAATCCAATCTTCGTGGATTCCATCATCGTGTCTCTC------------TCT--CT-CTCT---C-----TC---T---------------------------------------------------CTCTCTC-TCTCTGTTTGTCT-------------TTCTGGATCTCTTTCTTTCTTTTGGTATTTCA-----------------------TGCTGCTCTCGC---TGGCCTT--G------------------ATCAAATGTT-CAGACATCTTCTTCAACASizeHit CountTotal NormV110
Male body		V056
Unknown		V049
Head		V041
Embryo
...............................................................................GAAAGCTCTACCCAAACTCAC--T...........................................................................................................................................................................................................................................................................................................................22144.002.0023.0019.000.00
...............................................................................GAAAGCTCTACCCAAACTCAC--TA..........................................................................................................................................................................................................................................................................................................................2318.001.005.001.001.00
...............................................................................GAAAGCTCTACCCAAACTCAC--TAT.........................................................................................................................................................................................................................................................................................................................2418.001.005.002.000.00
...............................................................................GAAAGCTCTACCCAAACTCAC--TT..........................................................................................................................................................................................................................................................................................................................2314.000.001.003.000.00
...............GTGAGTTTAGTGGAGTT-TA...............................................................................................................................................................................................................................................................................................................................................................................................1913.003.000.000.000.00
...............................................................................GAAAGCTCTACCCAAACTCAC--TTT.........................................................................................................................................................................................................................................................................................................................2411.000.001.000.000.00
...............................................................................GTAAGCTCTACCCAAACTCAC--T...........................................................................................................................................................................................................................................................................................................................2211.001.000.000.000.00
...........................................................................................................................................................................................CTCT---C-----TC---T---------------------------------------------------CTCTCTC-TCTCTGTGTGT..............................................................................................................................................26310.030.030.000.000.00
...............................................................................GAAGGCTCTACCCAAACTCAC--T...........................................................................................................................................................................................................................................................................................................................2211.000.000.001.000.00
...............................................................................GAAAGCTCTACCTAAACTCAC--T...........................................................................................................................................................................................................................................................................................................................2211.000.001.000.000.00
...............................................................................GAAAGTTCTACCCAAACTCAC--TAT.........................................................................................................................................................................................................................................................................................................................2411.000.001.000.000.00
...............................................................................GAAAGCTCTACCCAAACTCAC--TAAA........................................................................................................................................................................................................................................................................................................................2511.000.000.001.000.00
...............................................................................GGACGCTCTACCCAAACTCAC--TA..........................................................................................................................................................................................................................................................................................................................2311.000.001.000.000.00
...............................................................................GAAAGATCTACCCAAACTCAC--T...........................................................................................................................................................................................................................................................................................................................2211.000.001.000.000.00
...............................................................................GAAAGCTCTACCCACACTCAC--TA..........................................................................................................................................................................................................................................................................................................................2311.000.000.001.000.00
..............................................................................CGAAAGCTCTACCCAAACTCAC--T...........................................................................................................................................................................................................................................................................................................................2311.000.001.000.000.00
...............................................................................GATAGCTCTACCCAAACTCAC--T...........................................................................................................................................................................................................................................................................................................................2211.000.001.000.000.00
...............................................................................GAAAGCTCTACCCAAACTCGC--TAT.........................................................................................................................................................................................................................................................................................................................2411.000.001.000.000.00
................................................................................AAAGCTCTACCCAAACTCAC--T...........................................................................................................................................................................................................................................................................................................................2111.000.001.000.000.00
...............................................................................GAAAGCTCTACCCACACTCAC--T...........................................................................................................................................................................................................................................................................................................................2211.000.000.001.000.00
...............................................................................GAAAGCTCTACCCAAACTCA...............................................................................................................................................................................................................................................................................................................................2011.000.001.000.000.00
droGri2
CGGAACCGTATCCGGGTGAGTTTCGTAGGGTT-TAAAGCAACAAAACTTTGCTCGCCGACAC----GC-----GTACGCGAAAGCTCTACCCAAACTCAC--TATGGAAA----CCCGT-----------------------------------------ATCCCAA------------CCC--CC-CAAA---T-----AA---T-CC--AACCAATATCCCAATCCTGGCCTGTTCGTTCTCGTGTTCTTTGCTTTTCT--------------------CTT--CTG----------------------------------CTCTTTCTTG-----------CCTGCTGCGATTGCTGCTTGTT--TTG------------------CTAAAATGTT-TAGACATATTCTTCAATASizeHit CountTotal NormV109
Male body

Generated: 04/20/2012 at 05:19:49 EDT