dme-mir-100- Best orthologs

dme-mir-100	chr2L:18471434-18471533 +	Known_mirbase
[View on miRBase]	[View on UCSC Genome Browser {Cornell Mirror}]	intergenic

Legend:

   mature strand at position 18471445-18471466
   star strand at position 18471484-18471505
   mutations
   read mismatches

20-way Fast Statistical Aligner (FSA) re-alignment

Visually pleasing best hits from LASTZ and MAF

Species	Coordinate	Source	Confidence	Alignment
dm3	chr2L:18471419-18471548 +		1	ATACTTACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACT-GGTTTTTGG-CAACAAAATCA---------------------ATGACA
droSim1	chr2L:18160327-18160456 +	LASTZ	1	ATACTTACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACT-GGTTTTTGG-CAACAAAATCA---------------------ATGACA
droSec1	super_7:2092721-2092850 +	LASTZ	1	ATACTTACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACT-GGTTTTTGG-CAACAAAATCA---------------------ATGACA
droYak2	chr2R:4988205-4988334 +	LASTZ	1	ATACTTACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACT-GGTTTTTGG-CAACAAAATCA---------------------ATGACA
droEre2	scaffold_4845:5800004-5800133 -	LASTZ	1	ATACTTACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACT-GGTTTTTGG-CAACAAAATCA---------------------ATGACA
droEug1	scf7180000409447:413958-414087 +	LASTZ	4	ATACTTACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACT-GGTT-TTGG-CAACAAAATGG------------------A--ATGACA
droBia1	scf7180000302422:5216164-5216294 -	LASTZ	4	ATACTTACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACT-GGTTTTTGG-CAACAAAATCG------------------A--GTAACA
droTak1	scf7180000415867:746325-746455 +	LASTZ	4	ATACTTACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACT-GGTTTTTGG-CAACTAAATCT------------------A--ATGACA
droEle1	scf7180000491338:2438776-2438906 +	LASTZ	4	ATACTTACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACT-GGTTTTTGG-CAACAAAATCA------------------A--ATGACA
droRho1	scf7180000780227:11878-12008 +	LASTZ	4	ATACTTACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACT-GGTTTTTGG-CAACAAAATCG------------------A--ATGACA
droFic1	scf7180000454059:476369-476499 -	LASTZ	4	ATACTTACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACT-GGTTTTTGG-CAGCAAAATCA------------------A--ATGACA
droKik1	scf7180000302401:73252-73384 -	LASTZ	4	ATACTTACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACT-GGTTTTTGG-CAACAAAATCA------------------AAACAGACA
droAna3	scaffold_12916:2378756-2378885 +	LASTZ	1	ATACTCACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTTTATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACT-GGTTTTTGG-CAACAAAATCA---------------------ATCGAA
droBip1	scf7180000396430:324459-324586 +	LASTZ	4	ATACTTACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTTTATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACT-GGTTTTTGG-CAACAAAATCA---------------------A--ACG
dp4	chr4_group3:3634738-3634867 +	LASTZ	1	ATACTTATATATGGACCATTAACAGAAACCCGTAATTCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACT-GGTTTTTGG-CAACAAAATTT---------------------ATCACA
droPer1	super_1:5115309-5115438 +	LASTZ	1	ATACTTATATATGGACCATTAACAGAAACCCGTAATTCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACT-GGTTTTTGG-CAACAAAATTT---------------------ATCACA
droWil1	scaffold_180708:11622810-11622939 +	LASTZ	1	ATAGTCACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACT-GGTTTTTGGCCAACAAAATCG------------------A--AT--CG
droVir3	scaffold_12963:18449830-18449980 +	LASTZ	1	ATACTCAAATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACT-GGTTTTTGG-CAACAAAAGACATATAAAATATATTAACAAAAATGACA
droMoj3	scaffold_6500:6185704-6185833 -	LASTZ	1	ATACTTACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACTTGGTTTTTGG-CAACAAA-GCA---------------------AAGCAA
droGri2	scaffold_15252:6427650-6427777 +	LASTZ	1	ATACTTACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTTTATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACT-GGTTTTTGG-CAACAAAA--G---------------------ACTACA

Legend

0- The ortholog is absent. A better synthenic sequence candidate could not be found.
1- Reads w/ good pileup on mature and star strand & folds into hairpin structure.
2- Reads w/ good pileup on mature and star strand BUT does not fold into hairpin structure.
3- Sporadic reads & folds into a hairpin structure.
4- No reads but folds into a hairpin structure.
5- Ortholog is confident but miRNA appears absent (no reads and does not fold into a hairpin)

Re-alignment after removal of non-confident orthologs

Species	Alignment
dm3	ATACTTACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACT-GGTTTTTGG-CAACAAAATCA---------------------ATGACA
droSim1	ATACTTACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACT-GGTTTTTGG-CAACAAAATCA---------------------ATGACA
droSec1	ATACTTACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACT-GGTTTTTGG-CAACAAAATCA---------------------ATGACA
droYak2	ATACTTACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACT-GGTTTTTGG-CAACAAAATCA---------------------ATGACA
droEre2	ATACTTACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACT-GGTTTTTGG-CAACAAAATCA---------------------ATGACA
droEug1	ATACTTACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACT-GGTT-TTGG-CAACAAAATGG------------------A--ATGACA
droBia1	ATACTTACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACT-GGTTTTTGG-CAACAAAATCG------------------A--GTAACA
droTak1	ATACTTACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACT-GGTTTTTGG-CAACTAAATCT------------------A--ATGACA
droEle1	ATACTTACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACT-GGTTTTTGG-CAACAAAATCA------------------A--ATGACA
droRho1	ATACTTACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACT-GGTTTTTGG-CAACAAAATCG------------------A--ATGACA
droFic1	ATACTTACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACT-GGTTTTTGG-CAGCAAAATCA------------------A--ATGACA
droKik1	ATACTTACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACT-GGTTTTTGG-CAACAAAATCA------------------AAACAGACA
droAna3	ATACTCACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTTTATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACT-GGTTTTTGG-CAACAAAATCA---------------------ATCGAA
droBip1	ATACTTACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTTTATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACT-GGTTTTTGG-CAACAAAATCA---------------------A--ACG
dp4	ATACTTATATATGGACCATTAACAGAAACCCGTAATTCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACT-GGTTTTTGG-CAACAAAATTT---------------------ATCACA
droPer1	ATACTTATATATGGACCATTAACAGAAACCCGTAATTCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACT-GGTTTTTGG-CAACAAAATTT---------------------ATCACA
droWil1	ATAGTCACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACT-GGTTTTTGGCCAACAAAATCG------------------A--AT--CG
droVir3	ATACTCAAATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACT-GGTTTTTGG-CAACAAAAGACATATAAAATATATTAACAAAAATGACA
droMoj3	ATACTTACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACTTGGTTTTTGG-CAACAAA-GCA---------------------AAGCAA
droGri2	ATACTTACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTTTATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACT-GGTTTTTGG-CAACAAAA--G---------------------ACTACA

20-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droEug1	droBia1	droTak1	droEle1	droRho1	droFic1	droKik1	droAna3	droBip1	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image

Small RNA-seq read pileup

Species

Alignment

droSim1

ATACTTACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACT-GGTTTTTGG-CAACAAAATCA---------------------ATGACA	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
..........................AACCCGTAAATCCGAACTTG...........................................................................................................	20	1	2167.00	0.00	1726.00	440.00	1.00
..........................AACCCGTAAATCCGAACTTGTG.........................................................................................................	22	1	226.00	1.00	171.00	54.00	0.00
.................................................................CAAGACCGGCATTATGGGAGTC..................................................................	22	1	181.00	1.00	131.00	48.00	1.00
..........................AACCCGTAAATCCGAACTTGT..........................................................................................................	21	1	65.00	0.00	56.00	9.00	0.00
..........................AACCCGTAAATCCGAACTGG...........................................................................................................	20	1	39.00	0.00	31.00	8.00	0.00
.........................AAACCCGTAAATCCGAACTTG...........................................................................................................	21	1	23.00	0.00	21.00	2.00	0.00
...........................ACCCGTAAATCCGAACTTG...........................................................................................................	19	1	21.00	0.00	19.00	2.00	0.00
............................CCCGTAAATCCGAACTTGT..........................................................................................................	19	1	18.00	0.00	16.00	2.00	0.00
..........................AACCCGTAAATCCGAACT.............................................................................................................	18	1	15.00	0.00	11.00	4.00	0.00
.................................................................CAAGACCGGCATTATGGGAGT...................................................................	21	1	14.00	0.00	14.00	0.00	0.00
............................CCCGTAAATCCGAACTTGTG.........................................................................................................	20	1	10.00	0.00	7.00	3.00	0.00
..........................AACCCTTAAATCCGAACTTGT..........................................................................................................	21	1	9.00	0.00	8.00	1.00	0.00
.................................................................CAAGACCGGCATTATGGGAGTCT.................................................................	23	1	8.00	0.00	7.00	1.00	0.00
............................CCCGTAAATCCGAACTTG...........................................................................................................	18	1	7.00	0.00	6.00	1.00	0.00
..........................AACCCTTAAATCCGAACTTG...........................................................................................................	20	1	6.00	0.00	5.00	1.00	0.00
...........................ACCCGTAAATCCGAACTTGTG.........................................................................................................	21	1	6.00	0.00	6.00	0.00	0.00
..........................AGCCCGTAAATCCGAACTTG...........................................................................................................	20	1	5.00	0.00	3.00	2.00	0.00
..........................AACCCGTAAATCCGAACTTGG..........................................................................................................	21	1	5.00	0.00	4.00	1.00	0.00
..........................GACCCGTAAATCCGAACTTG...........................................................................................................	20	1	5.00	0.00	4.00	1.00	0.00
..............................CGTAAATCCGAACTTGTG.........................................................................................................	18	1	4.00	0.00	2.00	2.00	0.00
.............................CCGTAAATCCGAACTTGT..........................................................................................................	18	1	4.00	0.00	4.00	0.00	0.00
..........................AACCCGTAAATCTGAACTTG...........................................................................................................	20	1	4.00	0.00	3.00	1.00	0.00
.........................CAACCCGTAAATCCGAACTTGTG.........................................................................................................	23	1	3.00	0.00	3.00	0.00	0.00
.................................................................CAAGACCGGCATTATGGGAG....................................................................	20	1	3.00	0.00	3.00	0.00	0.00
.................................................................CAAGACCGGCATTATGGGAGGC..................................................................	22	1	3.00	0.00	2.00	1.00	0.00
.........TGTGGACCATTGACAGAAACC...........................................................................................................................	21	1	2.00	0.00	2.00	0.00	0.00
.........TATGGACCATTAACAGAAACC...........................................................................................................................	21	1	2.00	0.00	0.00	2.00	0.00
.................................................................CAAGACCGGCATTATTGGAGTC..................................................................	22	1	2.00	0.00	2.00	0.00	0.00
..........................AACCTGTAAATCCGAACTTGT..........................................................................................................	21	1	2.00	0.00	0.00	2.00	0.00
..........................AACCCGTAAATCCGAACTTGTGA........................................................................................................	23	1	2.00	0.00	0.00	2.00	0.00
..........................AACCCGTAAATCCGAGCTTG...........................................................................................................	20	1	2.00	0.00	1.00	1.00	0.00
..........................AACCCATAAATCCGAACTTG...........................................................................................................	20	1	2.00	0.00	2.00	0.00	0.00
...........................AACCCTAAATCCGAACTTGT..........................................................................................................	20	1	2.00	0.00	2.00	0.00	0.00
..........................AACCCGTAAATCCGGACTTGT..........................................................................................................	21	1	2.00	0.00	2.00	0.00	0.00
.........................AAACCCTTAAATCCGAACTTGT..........................................................................................................	22	1	2.00	0.00	2.00	0.00	0.00
..........................AACCCGTAAATCCGAACTTGC..........................................................................................................	21	1	2.00	0.00	2.00	0.00	0.00
..........................AACCCGTAAATCCGAACTT............................................................................................................	19	1	1.00	0.00	1.00	0.00	0.00
.................................................................CAAGACCGGCATTATGGGAGTCC.................................................................	23	1	1.00	0.00	1.00	0.00	0.00
..........................AACCCGTxxATCCGAACTTG...........................................................................................................	18	1	1.00	0.00	0.00	1.00	0.00
.........................CAACCCGTAAATCCGAACTTG...........................................................................................................	21	1	1.00	0.00	1.00	0.00	0.00
.................................................................CAAGACCGACATTATGGGAGT...................................................................	21	1	1.00	0.00	0.00	1.00	0.00
..........................AACCCGTAAATCCGCACTTG...........................................................................................................	20	1	1.00	0.00	0.00	1.00	0.00
..................................................................AATACCGGCATTATGGGAGTCT.................................................................	22	1	1.00	0.00	1.00	0.00	0.00
.............................CCGTAAATCCGAACTTGC..........................................................................................................	18	1	1.00	0.00	0.00	1.00	0.00
.........................................ACTTGTGCTGTTTTATATCTGTTACA......................................................................................	26	1	1.00	0.00	0.00	1.00	0.00
..........................AACCCGTAAATCCGAACC.............................................................................................................	18	1	1.00	0.00	1.00	0.00	0.00
..................................................................AAGACCGGCATTATGGGAGTC..................................................................	21	1	1.00	0.00	1.00	0.00	0.00
.................................................................CAAGACCGTCATTATGGGAGTC..................................................................	22	1	1.00	0.00	0.00	1.00	0.00
.................................................TGTTTTATATCTGTTACAAG....................................................................................	20	1	1.00	0.00	1.00	0.00	0.00
..........................AACCCGTAAATCCGAACTTGGG.........................................................................................................	22	1	1.00	0.00	1.00	0.00	0.00
.................................................................CAAGACCGACATTATGGGAGTC..................................................................	22	1	1.00	0.00	1.00	0.00	0.00
.................................................................CAAGACCGGCATTATGGGATTC..................................................................	22	1	1.00	0.00	0.00	1.00	0.00
..........................AACCCGAAAATCCGAACTTGT..........................................................................................................	21	1	1.00	0.00	1.00	0.00	0.00
..........................AACCCGTAAATCCAAACTTG...........................................................................................................	20	1	1.00	0.00	1.00	0.00	0.00
.................................................................CAATACCGGCATTATGGGAGTC..................................................................	22	1	1.00	0.00	1.00	0.00	0.00
.......CATATGGACCATTAACAGAAACC...........................................................................................................................	23	1	1.00	0.00	1.00	0.00	0.00
..........................AGCCCGTAAATCCGAACTTGTG.........................................................................................................	22	1	1.00	0.00	1.00	0.00	0.00
............................CCCGTAAATCCGAACTTGTGT........................................................................................................	21	1	1.00	0.00	1.00	0.00	0.00
.................................................................CAAGACCGGCATTATGGAT.....................................................................	19	1	1.00	0.00	0.00	1.00	0.00
..............................CGTAAATCCGAACTTGTGCTGT.....................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00
.................................................................CAAGACCGGCATTATGGGAGC...................................................................	21	1	1.00	0.00	1.00	0.00	0.00
.............................CCGTAAATCCGAACTTATG.........................................................................................................	19	1	1.00	0.00	1.00	0.00	0.00
...........................................TTGTGCTGTTTTATATCTGTTACA......................................................................................	24	1	1.00	0.00	1.00	0.00	0.00
..............................CGTAAATCCGGACTTGTG.........................................................................................................	18	1	1.00	0.00	0.00	1.00	0.00
..........................AACCTGTAAATCCGAACTTG...........................................................................................................	20	1	1.00	0.00	1.00	0.00	0.00
............................CCCGTAAATCCGAACTTGC..........................................................................................................	19	1	1.00	0.00	1.00	0.00	0.00
..........................AACCCTTAAATCCGAACTTGC..........................................................................................................	21	1	1.00	0.00	1.00	0.00	0.00
...........................AACCGTAAATCCGAACTTG...........................................................................................................	19	1	1.00	0.00	1.00	0.00	0.00
...........................ACCCGTAAATCCGAACTGG...........................................................................................................	19	1	1.00	0.00	0.00	1.00	0.00
..........................AACCCGTAAATCCGAACTTGTGAA.......................................................................................................	24	1	1.00	0.00	1.00	0.00	0.00
..........................AACCCxTAAATCCGAACTTGTGA........................................................................................................	22	1	1.00	0.00	1.00	0.00	0.00
.........................AAACCCGTAAATCCGAACTTGTGAA.......................................................................................................	25	1	1.00	0.00	1.00	0.00	0.00
.........................AAACCCGTAAATCCGAACTTGTG.........................................................................................................	23	1	1.00	0.00	1.00	0.00	0.00
..........ATGGACCATTAACAGAAACC...........................................................................................................................	20	1	1.00	0.00	0.00	1.00	0.00
..........................AACCCGCAAATCCGAACTTG...........................................................................................................	20	1	1.00	0.00	1.00	0.00	0.00
..........................ATCCCGTAAATCCGAACTTG...........................................................................................................	20	1	1.00	0.00	1.00	0.00	0.00
..........................AACCCGTAAACCCGAACTTG...........................................................................................................	20	1	1.00	0.00	0.00	1.00	0.00
..........................AACCCGTAAATCCGAACTTA...........................................................................................................	20	1	1.00	0.00	1.00	0.00	0.00
..........................AACCCGTAAATCCGAACCTGC..........................................................................................................	21	1	1.00	0.00	1.00	0.00	0.00
...................................................................AGACCGGCATTATGGGAGTC..................................................................	20	1	1.00	0.00	0.00	1.00	0.00
..........................AACCCGTAAATCAGAACTTGT..........................................................................................................	21	1	1.00	0.00	1.00	0.00	0.00
.................................................................CAAGGCCGGCATTATGGGAGTC..................................................................	22	1	1.00	0.00	0.00	1.00	0.00
..........................AACCCGTAAATCCGAACTTGTGT........................................................................................................	23	1	1.00	0.00	1.00	0.00	0.00
..............................CGTAAATCCGAACTTGTGA........................................................................................................	19	1	1.00	0.00	0.00	1.00	0.00
..........................AACCCGTAAATCCGAACCTG...........................................................................................................	20	1	1.00	0.00	1.00	0.00	0.00
..........................AACCCTTAAATCCGAACT.............................................................................................................	18	1	1.00	0.00	0.00	1.00	0.00
..........................AACCCGTAGATCCGATCTTG...........................................................................................................	20	1	1.00	0.00	1.00	0.00	0.00

droSec1

ATACTTACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACT-GGTTTTTGG-CAACAAAATCA---------------------ATGACA	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
..........................AACCCGTAAATCCGAACTTGT..........................................................................................................	21	1	1150.00	405.00	1.00	744.00
..........................AACCCGTAAATCCGAACTTGTGT........................................................................................................	23	1	635.00	399.00	0.00	236.00
..........................AACCCGTAAATCCGAACTTGTG.........................................................................................................	22	1	629.00	78.00	2.00	549.00
.................................................................CAAGACCGGCATTATGGGAGT...................................................................	21	1	387.00	200.00	0.00	187.00
.................................................................CAAGACCGGCATTATGGGAGTC..................................................................	22	1	320.00	178.00	0.00	142.00
..........................AACCCGTAAATCCGAACTTGTGA........................................................................................................	23	1	119.00	28.00	0.00	91.00
.........................AAACCCGTAAATCCGAACTTGT..........................................................................................................	22	1	34.00	3.00	0.00	31.00
..........................AACCCGTAAATCCGAACTTG...........................................................................................................	20	1	29.00	0.00	0.00	29.00
.................................................................CAAGACCGGCATTATGGGAG....................................................................	20	1	28.00	12.00	0.00	16.00
...........................ACCCGTAAATCCGAACTTGTG.........................................................................................................	21	1	20.00	2.00	0.00	18.00
.................................................................CAAGACCGGCATTATGGGT.....................................................................	19	1	17.00	2.00	0.00	15.00
..........................AACCCGTAAATCCGAACTTGTGTT.......................................................................................................	24	1	12.00	8.00	0.00	4.00
.................................................................CAAGACCGGCATTATGGGAGTCT.................................................................	23	1	11.00	6.00	0.00	5.00
.................................................................CAAGACCGGCATTATGGGA.....................................................................	19	1	11.00	6.00	0.00	5.00
...........................ACCCGTAAATCCGAACTTGT..........................................................................................................	20	1	7.00	0.00	0.00	7.00
.........................AAACCCGTAAATCCGAACTTGTGT........................................................................................................	24	1	7.00	4.00	0.00	3.00
.........................CAACCCGTAAATCCGAACTTGT..........................................................................................................	22	1	6.00	3.00	0.00	3.00
..........................AACCCGTAAATCCGAACTTGTGC........................................................................................................	23	1	5.00	3.00	0.00	2.00
.................................................................CAGGACCGGCATTATGGGAGTC..................................................................	22	1	5.00	1.00	0.00	4.00
..................................................................AAGACCGGCATTATGGGAGT...................................................................	20	1	5.00	2.00	0.00	3.00
.................................................................CAAGACCGGCATTATGGGCGT...................................................................	21	1	5.00	5.00	0.00	0.00
................................................................ACAAGACCGGCATTATGGGAGT...................................................................	22	1	4.00	2.00	0.00	2.00
..........................AACCCGTAAATCCGAACTTGTT.........................................................................................................	22	1	4.00	2.00	0.00	2.00
.........................CAACCCGTAAATCCGAACTTGTG.........................................................................................................	23	1	3.00	0.00	0.00	3.00
..........................AACCCCTAAATCCGAACTTGTG.........................................................................................................	22	1	3.00	1.00	0.00	2.00
...........................ACCCGTAAATCCGAACTTGTGC........................................................................................................	22	1	3.00	0.00	0.00	3.00
..........................AACCCTTAAATCCGAACTTGT..........................................................................................................	21	1	3.00	1.00	0.00	2.00
..........................AACCCGTAAATCCGAACTTGTGAA.......................................................................................................	24	1	3.00	1.00	0.00	2.00
..........................AACCCGTAAATCCGAACTAGT..........................................................................................................	21	1	3.00	3.00	0.00	0.00
..........................AACCCGTAAATCCGAACTTGTGTA.......................................................................................................	24	1	3.00	1.00	0.00	2.00
..........................AACCCGTAAATCCGGACTTGTGT........................................................................................................	23	1	3.00	3.00	0.00	0.00
..........................AACCCGTAAATCCGACCTTGT..........................................................................................................	21	1	3.00	2.00	0.00	1.00
..................................................................AAGACCGGCATTATGGGAGTCT.................................................................	22	1	3.00	0.00	0.00	3.00
..........................AACCCGTAAATCCGAACTCGT..........................................................................................................	21	1	3.00	3.00	0.00	0.00
.........................CAACCCGTAAATCCGAACTTGTGA........................................................................................................	24	1	3.00	0.00	0.00	3.00
.........................AAACCCGTAAATCCGAACTTGTG.........................................................................................................	23	1	3.00	0.00	0.00	3.00
.................................................................CAAGACCGGCATTATGGG......................................................................	18	1	3.00	0.00	0.00	3.00
..........................AACCCGTxAATCCGAACTTGT..........................................................................................................	20	1	3.00	0.00	0.00	3.00
...........................ACCCGTAAATCCGAACTTGTGT........................................................................................................	22	1	3.00	2.00	0.00	1.00
..........................AACCCGTAAATCCGCACTTGTGT........................................................................................................	23	1	3.00	1.00	0.00	2.00
..........................AACCCGTAAATCCGAACTAGTGT........................................................................................................	23	1	3.00	3.00	0.00	0.00
..........................AACCAGTAAATCCGAACTTGT..........................................................................................................	21	1	3.00	2.00	0.00	1.00

droYak2

ATACTTACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACT-GGTTTTTGG-CAACAAAATCA---------------------ATGACA	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
..........................AACCCGTAAATCCGAACTTGT..........................................................................................................	21	1	1272.00	0.00	293.00	177.00	788.00	14.00
..........................AACCCGTAAATCCGAACTTGTG.........................................................................................................	22	1	499.00	2.00	127.00	26.00	291.00	53.00
..........................AACCCGTAAATCCGAACTTGTGT........................................................................................................	23	1	468.00	0.00	59.00	229.00	180.00	0.00
..........................AACCCGTAAATCCGAACTTG...........................................................................................................	20	1	367.00	0.00	5.00	1.00	9.00	352.00
.................................................................CAAGACCGGCATTATGGGAGTC..................................................................	22	1	149.00	0.00	14.00	71.00	41.00	23.00
.................................................................CAAGACCGGCATTATGGGAGT...................................................................	21	1	50.00	0.00	8.00	30.00	11.00	1.00
..........................AACCCGTAAATCCGAACTTGTGA........................................................................................................	23	1	47.00	0.00	11.00	1.00	33.00	2.00
..........................AACCCGTAAATCCGCACTTGT..........................................................................................................	21	1	45.00	0.00	7.00	0.00	38.00	0.00
..........................AACCCGTAAATCCGACCTTGT..........................................................................................................	21	1	20.00	0.00	0.00	0.00	20.00	0.00
...........................ACCCGTAAATCCGAACTTGT..........................................................................................................	20	1	19.00	0.00	6.00	3.00	10.00	0.00
..........................AACCCGTAAATCCGCACTTGTG.........................................................................................................	22	1	15.00	0.00	4.00	0.00	11.00	0.00
.........................AAACCCGTAAATCCGAACTTGT..........................................................................................................	22	1	14.00	0.00	3.00	3.00	8.00	0.00
..........................AACCCGGAAATCCGAACTTGT..........................................................................................................	21	1	12.00	0.00	1.00	0.00	11.00	0.00
.................................................................CAAGACCGGCATTATGGGAG....................................................................	20	1	12.00	0.00	4.00	3.00	5.00	0.00
..........................AACCCGTAACTCCGAACTTGT..........................................................................................................	21	1	10.00	0.00	2.00	0.00	8.00	0.00
..........................AACCCGTACATCCGAACTTGT..........................................................................................................	21	1	9.00	0.00	2.00	0.00	7.00	0.00
..........................AACCCGTAAATCCGAACTTGC..........................................................................................................	21	1	8.00	0.00	1.00	0.00	7.00	0.00
..........................AACCCGTAAATCCGCCCTTGT..........................................................................................................	21	1	7.00	0.00	0.00	0.00	7.00	0.00
...........................ACCCGTAAATCCGAACTTGTG.........................................................................................................	21	1	7.00	0.00	1.00	0.00	5.00	1.00
..........................AACCCGTAAATCCGAACTGG...........................................................................................................	20	1	7.00	0.00	0.00	0.00	0.00	7.00
..........................AACCCGTAAATCCGAACTTGTGC........................................................................................................	23	1	7.00	0.00	0.00	2.00	5.00	0.00
.................................................................CAAGACCGGCATTATGGGA.....................................................................	19	1	7.00	0.00	2.00	3.00	2.00	0.00
..........................AACCCGCAAATCCGAACTTGT..........................................................................................................	21	1	6.00	0.00	0.00	0.00	6.00	0.00
..........................AACCCGTAAATCCGGACTTGT..........................................................................................................	21	1	6.00	0.00	0.00	0.00	6.00	0.00
..........................AACCCGTCAATCCGAACTTGT..........................................................................................................	21	1	6.00	0.00	1.00	1.00	4.00	0.00
..........................AACCCGTAAATCCGAACTTGTGTT.......................................................................................................	24	1	6.00	0.00	0.00	4.00	2.00	0.00
..........................AACCCGTAAAGCCGAACTTGT..........................................................................................................	21	1	5.00	0.00	0.00	0.00	5.00	0.00
.........................AAACCCGTAAATCCGAACTTG...........................................................................................................	21	1	5.00	0.00	0.00	0.00	0.00	5.00
.................................................................CAGGACCGGCATTATGGGAGTC..................................................................	22	1	5.00	0.00	1.00	1.00	3.00	0.00
..........................AACCCGTAAATCCGCACTTGTGT........................................................................................................	23	1	5.00	0.00	1.00	1.00	3.00	0.00
..........................AACCAGTAAATCCGAACTTGT..........................................................................................................	21	1	5.00	0.00	1.00	0.00	4.00	0.00
..........................AACCCGTAAATCCGAACTTTT..........................................................................................................	21	1	5.00	0.00	1.00	0.00	4.00	0.00
..........................AACCCGTAATTCCGAACTTGT..........................................................................................................	21	1	5.00	0.00	3.00	0.00	2.00	0.00
..........................AACCCGTAATTCCGAACTTGTGT........................................................................................................	23	1	5.00	0.00	1.00	0.00	4.00	0.00
.................................................................CAAGACCGGCATTATGGGAGTCT.................................................................	23	1	4.00	0.00	1.00	2.00	1.00	0.00
..........................AACCCGTAAATCCGACCTTGTGT........................................................................................................	23	1	4.00	0.00	0.00	0.00	4.00	0.00
............................CCCGTAAATCCGAACTTGT..........................................................................................................	19	1	4.00	0.00	0.00	0.00	0.00	4.00
..........................AACCCGTAAATCCGAACTTGG..........................................................................................................	21	1	4.00	0.00	0.00	0.00	2.00	2.00
..........................AACCCGTAAATCCGAACT.............................................................................................................	18	1	4.00	0.00	1.00	0.00	0.00	3.00
..........................AACCCGTAAATCCGATCTTGT..........................................................................................................	21	1	4.00	0.00	0.00	0.00	4.00	0.00
..........................AACCCGTAAATCTGAACTTGTG.........................................................................................................	22	1	4.00	0.00	0.00	0.00	3.00	1.00
..........................AAACCGTAAATCCGAACTTGTG.........................................................................................................	22	1	4.00	0.00	0.00	0.00	4.00	0.00
..........................AACCCGTAAATCCGAGCTTGT..........................................................................................................	21	1	4.00	0.00	0.00	0.00	4.00	0.00
..........................AACCCGGAAATCCGAACTTGTG.........................................................................................................	22	1	3.00	0.00	0.00	0.00	3.00	0.00
..........................AACCCGTAATTCCGAACTTGTG.........................................................................................................	22	1	3.00	0.00	1.00	0.00	2.00	0.00
..........................AACCCGTAAATCCGAAATTGT..........................................................................................................	21	1	3.00	0.00	0.00	0.00	3.00	0.00
..........................AACCCATAAATCCGAACTTGT..........................................................................................................	21	1	3.00	0.00	0.00	0.00	3.00	0.00
..........................AACCCGTAAATCCGAACTCGT..........................................................................................................	21	1	3.00	0.00	0.00	0.00	3.00	0.00
...........................ACCCGTAAATCCGAACTTG...........................................................................................................	19	1	3.00	0.00	0.00	0.00	0.00	3.00
.........................AAACCCGTAAATCCGAACTTGTG.........................................................................................................	23	1	3.00	0.00	0.00	0.00	3.00	0.00
..........................AACCCGTAAATCCGAACTTTTG.........................................................................................................	22	1	3.00	0.00	1.00	0.00	2.00	0.00
..........................AACCCGTAAATCAGAACTTGT..........................................................................................................	21	1	3.00	0.00	2.00	0.00	1.00	0.00
............................................................TGTTACAAGACCGGCATTATG........................................................................	21	1	3.00	0.00	0.00	0.00	0.00	3.00
..........................AACCCGTAAATCCGAACTT............................................................................................................	19	1	3.00	0.00	0.00	1.00	0.00	2.00
..........................AACCCGTAGATCCGAACTTGT..........................................................................................................	21	1	3.00	0.00	1.00	0.00	2.00	0.00
..........................AACCCGAAAATCCGAACTTGT..........................................................................................................	21	1	3.00	0.00	1.00	0.00	2.00	0.00
..........................AACCCTTAAATCCGAACTTGT..........................................................................................................	21	1	3.00	0.00	0.00	0.00	0.00	3.00
..........................AACCCGTAAATCCGAACTTAT..........................................................................................................	21	1	3.00	0.00	0.00	0.00	3.00	0.00
.........................CAACCCGTAAATCCGAACTTGT..........................................................................................................	22	1	3.00	0.00	2.00	0.00	1.00	0.00
..........................AACCCGTAAGTCCGAACTTGT..........................................................................................................	21	1	3.00	0.00	0.00	0.00	3.00	0.00
..........................AACCCGTAAATCCGACCTTGTG.........................................................................................................	22	1	3.00	0.00	0.00	0.00	3.00	0.00

droEre2

ATACTTACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACT-GGTTTTTGG-CAACAAAATCA---------------------ATGACA	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
..........................AACCCGTAAATCCGAACTTGTG.........................................................................................................	22	1	1412.00	0.00	136.00	0.00	1276.00
..........................AACCCGTAAATCCGAACTTGT..........................................................................................................	21	1	1289.00	0.00	294.00	0.00	995.00
..........................AACCCGTAAATCCGAACTTGTGT........................................................................................................	23	1	518.00	0.00	88.00	0.00	430.00
.................................................................CAAGACCGGCATTATGGGAGTC..................................................................	22	1	230.00	1.00	10.00	0.00	219.00
..........................AACCCGTAAATCCGAACTTGTGA........................................................................................................	23	1	159.00	0.00	15.00	0.00	144.00
.................................................................CAAGACCGGCATTATGGGAGT...................................................................	21	1	127.00	0.00	18.00	0.00	109.00
...........................ACCCGTAAATCCGAACTTGTG.........................................................................................................	21	1	63.00	0.00	7.00	0.00	56.00
..........................AACCCGTAAATCCGAACTTG...........................................................................................................	20	1	38.00	0.00	3.00	0.00	35.00
..........................AACCAGTAAATCCGAACTTGTG.........................................................................................................	22	1	36.00	0.00	1.00	0.00	35.00
.................................................................CAAGACCGGCATTATGGG......................................................................	18	1	35.00	0.00	0.00	0.00	35.00
.................................................................CAAGACCGGCATTATGGGT.....................................................................	19	1	34.00	0.00	0.00	0.00	34.00
.........................AAACCCGTAAATCCGAACTTGT..........................................................................................................	22	1	27.00	0.00	8.00	0.00	19.00
.................................................................CAAGACCGGCATTATGGGAG....................................................................	20	1	27.00	0.00	2.00	0.00	25.00
..........................AACCAGTAAATCCGAACTTGT..........................................................................................................	21	1	25.00	0.00	2.00	0.00	23.00
...........................ACCCGTAAATCCGAACTTGT..........................................................................................................	20	1	23.00	0.00	4.00	0.00	19.00
...........................ACCCGTAAATCCGAACTTGTGC........................................................................................................	22	1	16.00	0.00	0.00	0.00	16.00
..........................AACCCGTAAATCCTAACTTGTG.........................................................................................................	22	1	16.00	0.00	0.00	0.00	16.00
.................................................................CAAGACCGGCATTATGGGAGTCT.................................................................	23	1	15.00	0.00	0.00	0.00	15.00
..........................AACCCGTAAATCCGAACTTGTGTT.......................................................................................................	24	1	13.00	0.00	1.00	0.00	12.00
..........................AACCCGTAAATCCGAACTTGTGC........................................................................................................	23	1	13.00	0.00	1.00	0.00	12.00
..........................AACCCTTAAATCCGAACTTGTG.........................................................................................................	22	1	12.00	0.00	0.00	0.00	12.00
.........................AAACCCGTAAATCCGAACTTGTG.........................................................................................................	23	1	12.00	0.00	0.00	0.00	12.00
................................................................ACAAGACCGGCATTATGGGAGT...................................................................	22	1	12.00	0.00	2.00	0.00	10.00
..........................AACCCGTAAATCAGAACTTGT..........................................................................................................	21	1	11.00	0.00	0.00	0.00	11.00
..........................AACCAGTAAATCCGAACTTGTGT........................................................................................................	23	1	11.00	0.00	0.00	0.00	11.00
..........................AACACGTAAATCCGAACTTGT..........................................................................................................	21	1	10.00	0.00	2.00	0.00	8.00
..........................AAACCGTAAATCCGAACTTGT..........................................................................................................	21	1	10.00	0.00	0.00	0.00	10.00
..........................AACCCGTAAATCAGAACTTGTG.........................................................................................................	22	1	10.00	0.00	0.00	0.00	10.00
..........................AACCCGTAAATCCTAACTTGT..........................................................................................................	21	1	10.00	0.00	0.00	0.00	10.00
..........................AACCCGTAAATCCTAACTTGTGT........................................................................................................	23	1	9.00	0.00	0.00	0.00	9.00
.........................CAACCCGTAAATCCGAACTTGT..........................................................................................................	22	1	9.00	0.00	0.00	0.00	9.00
.................................................................CAAGACCGGCATTATGGGA.....................................................................	19	1	9.00	0.00	1.00	0.00	8.00
..........................AACCTGTAAATCCGAACTTGTG.........................................................................................................	22	1	8.00	0.00	0.00	0.00	8.00
..........................AACACGTAAATCCGAACTTGTG.........................................................................................................	22	1	8.00	0.00	0.00	0.00	8.00
..........................AACCCGTAAATCCGAAATTGTG.........................................................................................................	22	1	8.00	0.00	0.00	0.00	8.00
..........................AACCCGTAAATCCGAACTTGTT.........................................................................................................	22	1	8.00	0.00	0.00	0.00	8.00
..........................AACCCGTAAATCCGACCTTGTG.........................................................................................................	22	1	8.00	0.00	2.00	0.00	6.00
.........................CAACCCGTAAATCCGAACTTGTG.........................................................................................................	23	1	7.00	0.00	1.00	0.00	6.00
..........................AACCCGTAAATCCGCACTTGT..........................................................................................................	21	1	7.00	0.00	4.00	0.00	3.00
..........................AACCCGTAAATACGAACTTGTG.........................................................................................................	22	1	7.00	0.00	1.00	0.00	6.00
..........................AACCCGTAAATCCGAACTTTTG.........................................................................................................	22	1	6.00	0.00	0.00	0.00	6.00
..........................AACCCGTAAATCTGAACTTGTG.........................................................................................................	22	1	6.00	0.00	0.00	0.00	6.00
..........................AACCCGTAAATCCTAACTTGTGA........................................................................................................	23	1	6.00	0.00	1.00	0.00	5.00
.........................AAACCCGTAAATCCGAACTTGTGT........................................................................................................	24	1	5.00	0.00	2.00	0.00	3.00
.................................................................CAGGACCGGCATTATGGGAGTC..................................................................	22	1	5.00	0.00	0.00	0.00	5.00
..........................AACCCGTAAATCTGAACTTGT..........................................................................................................	21	1	5.00	0.00	3.00	0.00	2.00
..........................AACCCTTAAATCCGAACTTGT..........................................................................................................	21	1	5.00	0.00	0.00	0.00	5.00
..........................AAACCGTAAATCCGAACTTGTG.........................................................................................................	22	1	5.00	0.00	0.00	0.00	5.00
...........................ACCCGTAAATCCGAACTTGTGA........................................................................................................	22	1	5.00	0.00	0.00	0.00	5.00
.................................................................CAAGACCGGCATTATTGGAGTC..................................................................	22	1	4.00	0.00	0.00	0.00	4.00
..........................AACCTGTAAATCCGAACTTGT..........................................................................................................	21	1	4.00	0.00	1.00	0.00	3.00
..........................AACCCGTAAATCCGCACTTGTG.........................................................................................................	22	1	4.00	0.00	1.00	0.00	3.00
..........................GACCCGTAAATCCGAACTTGT..........................................................................................................	21	1	4.00	0.00	1.00	0.00	3.00
..........................AACCCGTAAATCCGACCTTGT..........................................................................................................	21	1	4.00	0.00	4.00	0.00	0.00
.................................................................CAAGACCGGCATTATGTGAGT...................................................................	21	1	4.00	0.00	1.00	0.00	3.00
.................................................................CAATACCGGCATTATGGGAGTC..................................................................	22	1	4.00	0.00	0.00	0.00	4.00
..........................CACCCGTAAATCCGAACTTGTG.........................................................................................................	22	1	4.00	0.00	0.00	0.00	4.00
..........................AACCCGTAAATCCGAACTTTT..........................................................................................................	21	1	4.00	0.00	1.00	0.00	3.00
..............................CGTAAATCCGAACTTGTG.........................................................................................................	18	1	4.00	0.00	1.00	0.00	3.00
..........................AACCCGTAAATCAGAACTTGTGT........................................................................................................	23	1	4.00	0.00	0.00	0.00	4.00
..........................AACCCGTAAATCCGAACTTGTGG........................................................................................................	23	1	4.00	0.00	1.00	0.00	3.00
..........................AACCCGTAAATACGAACTTGT..........................................................................................................	21	1	4.00	0.00	0.00	0.00	4.00
.................................................................CAAGACCGGCATTATGGGAGTCA.................................................................	23	1	4.00	0.00	0.00	0.00	4.00
..........................AACACGTAAATCCGAACTTGTGA........................................................................................................	23	1	3.00	0.00	0.00	0.00	3.00
..........................AAGCCGTAAATCCGAACTTGT..........................................................................................................	21	1	3.00	0.00	0.00	0.00	3.00
.................................................................AAAGACCGGCATTATGGGAGTC..................................................................	22	1	3.00	0.00	0.00	0.00	3.00
...........................ACCCGTAAATCCGAACTTGTGT........................................................................................................	22	1	3.00	0.00	1.00	0.00	2.00
..........................AACCCGTAAATCCGCACTTGTGT........................................................................................................	23	1	3.00	0.00	2.00	0.00	1.00
............................................................TGTTACAAGACCGGCATTATGG.......................................................................	22	1	3.00	0.00	0.00	0.00	3.00
..........................AACCCGTAAATCCGAACTT............................................................................................................	19	1	3.00	0.00	1.00	0.00	2.00
..........................AATCCGTAAATCCGAACTTGT..........................................................................................................	21	1	3.00	0.00	1.00	0.00	2.00
..........................AACCCGTAAATCCGAACTCGTG.........................................................................................................	22	1	3.00	0.00	1.00	0.00	2.00
..........................AACCCGTAAATCCAAACTTGT..........................................................................................................	21	1	3.00	0.00	1.00	0.00	2.00
.................................................................CAAGACCGGCATTATGGT......................................................................	18	1	3.00	0.00	0.00	0.00	3.00
..........................AACACGTAAATCCGAACTTGTGT........................................................................................................	23	1	3.00	0.00	0.00	0.00	3.00
.................................................................CAAGACCGGCATTATGGTAGTC..................................................................	22	1	3.00	0.00	0.00	0.00	3.00

droEug1

ATACTTACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACT-GGTT-TTGG-CAACAAAATGG------------------A--ATGACA

Size

Hit Count

Total Norm

droBia1

ATACTTACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACT-GGTTTTTGG-CAACAAAATCG------------------A--GTAACA

Size

Hit Count

Total Norm

droTak1

ATACTTACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACT-GGTTTTTGG-CAACTAAATCT------------------A--ATGACA

Size

Hit Count

Total Norm

droEle1

ATACTTACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACT-GGTTTTTGG-CAACAAAATCA------------------A--ATGACA

Size

Hit Count

Total Norm

droRho1

ATACTTACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACT-GGTTTTTGG-CAACAAAATCG------------------A--ATGACA

Size

Hit Count

Total Norm

droFic1

ATACTTACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACT-GGTTTTTGG-CAGCAAAATCA------------------A--ATGACA

Size

Hit Count

Total Norm

droKik1

ATACTTACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACT-GGTTTTTGG-CAACAAAATCA------------------AAACAGACA

Size

Hit Count

Total Norm

droAna3

ATACTCACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTTTATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACT-GGTTTTTGG-CAACAAAATCA---------------------ATCGAA	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
..........................AACCCGTAAATCCGAACTTGT..........................................................................................................	21	1	1201.00	210.00	327.00	664.00	0.00
..........................AACCCGTAAATCCGAACTTGTG.........................................................................................................	22	1	625.00	39.00	478.00	106.00	2.00
..........................AACCCGTAAATCCGAACTTGTGT........................................................................................................	23	1	625.00	333.00	153.00	139.00	0.00
.................................................................CAAGACCGGCATTATGGGAGT...................................................................	21	1	279.00	168.00	87.00	24.00	0.00
.................................................................CAAGACCGGCATTATGGGAGTC..................................................................	22	1	251.00	132.00	75.00	44.00	0.00
...........................ACCCGTAAATCCGAACTTGTG.........................................................................................................	21	1	78.00	1.00	67.00	10.00	0.00
..........................AACCCGTAAATCCGAACTTGTGA........................................................................................................	23	1	71.00	2.00	44.00	25.00	0.00
.................................................................CAAGACCGGCATTATGGGA.....................................................................	19	1	51.00	31.00	19.00	1.00	0.00
.................................................................CAAGACCGGCATTATGGGT.....................................................................	19	1	41.00	9.00	31.00	1.00	0.00
.................................................................CAAGACCGGCATTATGGG......................................................................	18	1	40.00	3.00	28.00	9.00	0.00
.................................................................CAAGACCGGCATTATGGGAG....................................................................	20	1	39.00	24.00	10.00	5.00	0.00
...........................ACCCGTAAATCCGAACTTGT..........................................................................................................	20	1	34.00	5.00	15.00	14.00	0.00
................................................................ACAAGACCGGCATTATGGGAGT...................................................................	22	1	26.00	11.00	15.00	0.00	0.00
...........................ACCCGTAAATCCGAACTTGTGC........................................................................................................	22	1	24.00	0.00	24.00	0.00	0.00
..........................AACCCGTAAATCCGAACTTG...........................................................................................................	20	1	20.00	3.00	9.00	8.00	0.00
...........................ACCCGTAAATCCGAACTTGTGT........................................................................................................	22	1	17.00	4.00	7.00	6.00	0.00
..........................AACCCGTAAATCCGAACTTGTT.........................................................................................................	22	1	12.00	0.00	9.00	3.00	0.00
..........................AACCCGTAAATCCGAACTTGC..........................................................................................................	21	1	11.00	3.00	2.00	6.00	0.00
..........................AACCCGTAAATCCGACCTTGT..........................................................................................................	21	1	10.00	1.00	0.00	9.00	0.00
................................................................ACAAGACCGGCATTATGGGAG....................................................................	21	1	9.00	5.00	2.00	2.00	0.00
.................................................................CAGGACCGGCATTATGGGAGTC..................................................................	22	1	9.00	0.00	8.00	1.00	0.00
..........................AACCCGGAAATCCGAACTTGT..........................................................................................................	21	1	9.00	0.00	0.00	9.00	0.00
..........................AACCCGTAAATCCGAACTTGTGTT.......................................................................................................	24	1	9.00	5.00	2.00	2.00	0.00
.................................................................CAAGACCGGCATTATGGGAGTCT.................................................................	23	1	8.00	2.00	4.00	2.00	0.00
.........................AAACCCGTAAATCCGAACTTGT..........................................................................................................	22	1	8.00	1.00	3.00	4.00	0.00
..........................AACCCGTAAATCCGAACTTGA..........................................................................................................	21	1	8.00	3.00	3.00	2.00	0.00
..........................AACCCGCAAATCCGAACTTGT..........................................................................................................	21	1	6.00	0.00	0.00	6.00	0.00
..........................AACCCGTAAATCAGAACTTGT..........................................................................................................	21	1	6.00	0.00	1.00	5.00	0.00
..........................AACCAGTAAATCCGAACTTGT..........................................................................................................	21	1	6.00	2.00	0.00	4.00	0.00
.................................................................CAAGACCGGCATTATGGGAGTT..................................................................	22	1	6.00	3.00	3.00	0.00	0.00
................................................................ACAAGACCGGCATTATGGGA.....................................................................	20	1	6.00	2.00	1.00	3.00	0.00
..........................AACCCGTAAATCCGAACTTCT..........................................................................................................	21	1	6.00	0.00	0.00	6.00	0.00
..........................AACACGTAAATCCGAACTTGT..........................................................................................................	21	1	5.00	1.00	2.00	2.00	0.00
..........................AAACCGTAAATCCGAACTTGT..........................................................................................................	21	1	5.00	0.00	0.00	5.00	0.00
..........................AACCCGTAAAGCCGAACTTGT..........................................................................................................	21	1	4.00	0.00	0.00	4.00	0.00
..........................AACCCGTAAATCCGAACTTGG..........................................................................................................	21	1	4.00	0.00	0.00	4.00	0.00
..........................AACCCGTAAATCCGAACTTGCGT........................................................................................................	23	1	4.00	2.00	1.00	1.00	0.00
..........................AACCCGTAAATCCGAACTTGAGT........................................................................................................	23	1	4.00	3.00	1.00	0.00	0.00
..........................AACCCGTAAATACGAACTTGT..........................................................................................................	21	1	4.00	0.00	4.00	0.00	0.00
..........................AACCCGTAAATACGAACTTGTG.........................................................................................................	22	1	4.00	1.00	3.00	0.00	0.00
..........................AACCAGTAAATCCGAACTTGTG.........................................................................................................	22	1	4.00	0.00	4.00	0.00	0.00
.................................................................CAAGACCGGCATTATGGGAGAC..................................................................	22	1	4.00	3.00	0.00	1.00	0.00
..........................AACCCGTAAATCCGCACTTGT..........................................................................................................	21	1	3.00	0.00	0.00	3.00	0.00
..........................AACCCGGAAATCCGAACTTGTG.........................................................................................................	22	1	3.00	0.00	0.00	3.00	0.00
..........................AACCCGTAAGTCCGAACTTGTG.........................................................................................................	22	1	3.00	0.00	2.00	1.00	0.00
..........................AACCTGTAAATCCGAACTTGT..........................................................................................................	21	1	3.00	0.00	0.00	3.00	0.00
..........................AACCCGTAAATGCGAACTTGTGT........................................................................................................	23	1	3.00	2.00	0.00	1.00	0.00
..........................AACCCGTAAATACGAACTTGTGT........................................................................................................	23	1	3.00	2.00	1.00	0.00	0.00
..........................GACCCGTAAATCCGAACTTGTG.........................................................................................................	22	1	3.00	0.00	2.00	1.00	0.00
..........................AACCCGTAAATCCGAACTTTTG.........................................................................................................	22	1	3.00	0.00	2.00	1.00	0.00
..........................AACCCGTAAATCTGAACTTGTGT........................................................................................................	23	1	3.00	2.00	1.00	0.00	0.00
..........................AACCCGTAAATCCGAACTT............................................................................................................	19	1	3.00	0.00	1.00	2.00	0.00
..........................AACCCGCAAATCCGAACTTGTGT........................................................................................................	23	1	3.00	3.00	0.00	0.00	0.00
..........................AACCCGTAAATCCTAACTTGTGT........................................................................................................	23	1	3.00	0.00	2.00	1.00	0.00
..........................AACCCGTAAATCCAAACTTGT..........................................................................................................	21	1	3.00	0.00	1.00	2.00	0.00
..........................AACCCGTAAATCAGAACTTGTG.........................................................................................................	22	1	3.00	1.00	1.00	1.00	0.00
.........................CAACCCGTAAATCCGAACTTGT..........................................................................................................	22	1	3.00	0.00	0.00	3.00	0.00
..........................AACCCGGAAATCCGAACTTGTGT........................................................................................................	23	1	3.00	1.00	0.00	2.00	0.00
..........................AAGCCGTAAATCCGAACTTGTG.........................................................................................................	22	1	3.00	0.00	3.00	0.00	0.00
..........................AACCCGTAAATCCTAACTTGT..........................................................................................................	21	1	3.00	0.00	3.00	0.00	0.00
..........................AACCCGTAAATCCGAGCTTGT..........................................................................................................	21	1	3.00	1.00	1.00	1.00	0.00
..........................AACCCGTACATCCGAACTTGT..........................................................................................................	21	1	3.00	0.00	1.00	2.00	0.00
..........................AACCCGTAAATCCGAACTTGGG.........................................................................................................	22	1	3.00	0.00	2.00	1.00	0.00
..........................AACCCGTAAATCCGAACTTGTGC........................................................................................................	23	1	3.00	0.00	3.00	0.00	0.00

droBip1

ATACTTACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTTTATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACT-GGTTTTTGG-CAACAAAATCA---------------------A--ACG

Size

Hit Count

Total Norm

dp4

ATACTTATATATGGACCATTAACAGAAACCCGTAATTCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACT-GGTTTTTGG-CAACAAAATTT---------------------ATCACA	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
..........................AACCCGTAATTCCGAACTTGT..........................................................................................................	21	1	318.00	23.00	0.00	295.00	0.00
..........................AACCCGTAATTCCGAACTTGTG.........................................................................................................	22	1	99.00	5.00	0.00	94.00	0.00
..........................AACCCGTAATTCCGAACTTGTGT........................................................................................................	23	1	87.00	28.00	0.00	59.00	0.00
.................................................................CAAGACCGGCATTATGGGAGTC..................................................................	22	1	84.00	49.00	0.00	32.00	3.00
.................................................................CAAGACCGGCATTATGGGAGT...................................................................	21	1	56.00	39.00	0.00	17.00	0.00
.................................................................CAGGACCGGCATTATGGGAGTC..................................................................	22	1	25.00	9.00	0.00	16.00	0.00
.................................................................CAAGACCGGCATTATGGGAG....................................................................	20	1	18.00	10.00	0.00	8.00	0.00
...........................ACCCGTAATTCCGAACTTGT..........................................................................................................	20	1	11.00	2.00	0.00	9.00	0.00
...........................ACCCGTAATTCCGAACTTGTG.........................................................................................................	21	1	11.00	3.00	0.00	8.00	0.00
.................................................................CAAGACCGGCATTATGGGA.....................................................................	19	1	7.00	6.00	0.00	1.00	0.00
............................................................TGTTACAAGACCGGCATTATGGG......................................................................	23	1	6.00	0.00	0.00	6.00	0.00
..........................AACCCGTAATTCCGCACTTGT..........................................................................................................	21	1	6.00	0.00	0.00	6.00	0.00
.........................AAACCCGTAATTCCGAACTTGT..........................................................................................................	22	1	5.00	0.00	0.00	5.00	0.00
..........................AACCCGGAATTCCGAACTTGT..........................................................................................................	21	1	5.00	0.00	0.00	5.00	0.00
..........................AACCCGTAAATCCGAACTTGTGT........................................................................................................	23	1	4.00	3.00	0.00	1.00	0.00
..........................AACCCGTAATTCCGAACTTG...........................................................................................................	20	1	4.00	0.00	0.00	4.00	0.00
..........................AACCCGTAAATCCGAACTTGTG.........................................................................................................	22	1	3.00	1.00	1.00	1.00	0.00
..........................AACCCGTAAATCCGAACTTGT..........................................................................................................	21	1	3.00	0.00	0.00	3.00	0.00
.................................................................CAAGACCGGCATTATGGGAGCC..................................................................	22	1	2.00	0.00	0.00	2.00	0.00
..........................AACCCGCAATTCCGAACTTGT..........................................................................................................	21	1	2.00	0.00	0.00	2.00	0.00
..........................AACCCGTAATTCCGAACTTGTT.........................................................................................................	22	1	2.00	0.00	0.00	2.00	0.00
.................................................................CAAGACCGGCGTTATGGGAGT...................................................................	21	1	2.00	2.00	0.00	0.00	0.00
................................................................ACAAGACCGGCATTATGGGAGT...................................................................	22	1	2.00	2.00	0.00	0.00	0.00
..........................AAACCGTAATTCCGAACTTGT..........................................................................................................	21	1	2.00	0.00	0.00	2.00	0.00
..........................AACCCGTAATTCAGAACTTGT..........................................................................................................	21	1	2.00	0.00	0.00	2.00	0.00
..........................AACCCGTAATTCCGAACTTGC..........................................................................................................	21	1	2.00	0.00	0.00	2.00	0.00
..................................................................AAGACCGGCATTATGGGAGTC..................................................................	21	1	2.00	2.00	0.00	0.00	0.00
..........................AACCCGTAATTCCGAACTTGTGA........................................................................................................	23	1	2.00	0.00	0.00	2.00	0.00
..................................................................AGGACCGGCATTATGGGAGTC..................................................................	21	1	2.00	1.00	0.00	1.00	0.00
...........................ACCCGTAATTCCGAACTTGTGC........................................................................................................	22	1	2.00	1.00	0.00	1.00	0.00
..........................AACCCGTAATTCCGACCTTGTGT........................................................................................................	23	1	1.00	0.00	0.00	1.00	0.00
..........................AAACCGTAATTCCGACCTTGT..........................................................................................................	21	1	1.00	0.00	0.00	1.00	0.00
.................................................................CAGGACCGGCATTGTGGGAGT...................................................................	21	1	1.00	0.00	0.00	1.00	0.00
..........................AACCAGTAATTCCGAACTTGTG.........................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00
..........................AACCCGTAAGTCCGAACTTGTG.........................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00
..........................AACCTGTAATTCCGAACTTGTG.........................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00
..........................AACCCGTAATTCCTAACTTGTG.........................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00
.................................................................CAAGACCGGGATTATGGGA.....................................................................	19	1	1.00	1.00	0.00	0.00	0.00
.................................................................CAAGACCGGCATTATGAGAGTC..................................................................	22	1	1.00	0.00	0.00	1.00	0.00
................................................................ACAAGACCGGCATTATGGGAG....................................................................	21	1	1.00	0.00	0.00	1.00	0.00
..........................GACCCGTAATTCCGAACTTGTGT........................................................................................................	23	1	1.00	0.00	0.00	1.00	0.00
....................................................................GACCGGCATTATGGGAGTCTGT...............................................................	22	1	1.00	0.00	0.00	1.00	0.00
..............................CGTAGATCCGAACTTGTG.........................................................................................................	18	1	1.00	0.00	1.00	0.00	0.00
..........................AACCCGGAATTCCGAACTTGTG.........................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00
.................................................................TAAGACCGGCATTATGGGAGTCC.................................................................	23	1	1.00	0.00	0.00	1.00	0.00
..........................AAACCGTAATTCCGAACTTGTGT........................................................................................................	23	1	1.00	0.00	0.00	1.00	0.00
..........................AACCCGTAATTCCCAACTTGT..........................................................................................................	21	1	1.00	0.00	0.00	1.00	0.00
.......................................................................................TGTCAATGCAAACTACT-AGTT............................................	21	1	1.00	0.00	0.00	1.00	0.00
..........................AACCCGTAATTCCGATCTTGT..........................................................................................................	21	1	1.00	0.00	0.00	1.00	0.00
..........................AAGCCGTAATTCCGAACTCGTG.........................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00
..........................AACCCGTAATTCTGAAATTGT..........................................................................................................	21	1	1.00	0.00	0.00	1.00	0.00
..........................AACCCGTAACTCCGAACTAGT..........................................................................................................	21	1	1.00	0.00	0.00	1.00	0.00
..........................AACCCGTAATTCCCCACTTGT..........................................................................................................	21	1	1.00	0.00	0.00	1.00	0.00
.................................................................CGGGACCGGCATTATGGGAGTC..................................................................	22	1	1.00	1.00	0.00	0.00	0.00
..........................GACCCGTAATTCCGAACTTGTG.........................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00
.................................................................CAGGACCGGCATTATGGGAGT...................................................................	21	1	1.00	0.00	0.00	1.00	0.00
..........................AACCCGTAATTCCGAACTCGTGT........................................................................................................	23	1	1.00	0.00	0.00	1.00	0.00
..........................AAGCCGTAATTCCGAACTTGTGT........................................................................................................	23	1	1.00	0.00	0.00	1.00	0.00
..........................AACCCGTAATTACGAACTAGTG.........................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00
..........................AACCCGTAATTCCGACCTTGT..........................................................................................................	21	1	1.00	0.00	0.00	1.00	0.00
..........................AACCCGTAATTCCCAACTTGTG.........................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00
.........................CAACCCGTAATTCCGAACTTGT..........................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00
..........................GACCCGTAATTCCGAACTTGT..........................................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
..........................AACCCGTAATTCCGAGCTTGT..........................................................................................................	21	1	1.00	0.00	0.00	1.00	0.00
..........................AACCCGTAATTCCGAACCTGTG.........................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00
..........................AACCCGTCATTCCGAACTTGT..........................................................................................................	21	1	1.00	0.00	0.00	1.00	0.00
.....................................................................ACCGGCATTATGGGAGTCTGT...............................................................	21	1	1.00	0.00	0.00	1.00	0.00
...........................ACCCGTAATTCCGAACTTGTGT........................................................................................................	22	1	1.00	1.00	0.00	0.00	0.00
................................................................ACAGGACCGGCATTATGGGAGT...................................................................	22	1	1.00	0.00	0.00	1.00	0.00
..........................AACCTGTAATTCCGAACTTGT..........................................................................................................	21	1	1.00	0.00	0.00	1.00	0.00
..........................AACCCGTAATTCCGAACTAGTGT........................................................................................................	23	1	1.00	0.00	0.00	1.00	0.00
..........................AACCCGTAATTCCGTACTTGTGT........................................................................................................	23	1	1.00	0.00	0.00	1.00	0.00
..........................AACCCGTAATACCGATCTTGT..........................................................................................................	21	1	1.00	0.00	0.00	1.00	0.00
...........................ACCCGTAATTCCGCACTTGTG.........................................................................................................	21	1	1.00	0.00	0.00	1.00	0.00
..........................AACCCGTAATTCCGAACTCGT..........................................................................................................	21	1	1.00	0.00	0.00	1.00	0.00
..........................AACCCGTAAGTCCGAACTTGT..........................................................................................................	21	1	1.00	0.00	0.00	1.00	0.00
.........................AAACCCGTAATTCCGAACTTGTGT........................................................................................................	24	1	1.00	0.00	0.00	1.00	0.00
..........................AACCCGTAGTTCCGGACTTGT..........................................................................................................	21	1	1.00	0.00	0.00	1.00	0.00
...........................ACCCGTAATTCCGAACTTGTTT........................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00
..........................AACCCGTAGTTCCGACCTTGT..........................................................................................................	21	1	1.00	0.00	0.00	1.00	0.00
..........................AACCCGTAATTCCTAACTTGTGT........................................................................................................	23	1	1.00	1.00	0.00	0.00	0.00
..........................AACCCGTAATTCCGAACTTTT..........................................................................................................	21	1	1.00	0.00	0.00	1.00	0.00
..........................AACCAGTAAGTCCGAACTTGT..........................................................................................................	21	1	1.00	0.00	0.00	1.00	0.00
..........................AACCCGTAATTCCGAAGTTGT..........................................................................................................	21	1	1.00	0.00	0.00	1.00	0.00
........................................................TATCTGTTACAAGACCGGCATTATGGGA.....................................................................	28	1	1.00	1.00	0.00	0.00	0.00
..........................AAACCGTAATTCCGAACTCGTG.........................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00
.................................................................CAAGACCGGCATTATGGG......................................................................	18	1	1.00	0.00	0.00	1.00	0.00
..........................AACCCGTAATTCCGAACGTG...........................................................................................................	20	1	1.00	0.00	0.00	1.00	0.00
.................................................................CAAGACCGGCCTTATGGGAGTC..................................................................	22	1	1.00	1.00	0.00	0.00	0.00
..........................AACCCGTAATTCCGAACCTGT..........................................................................................................	21	1	1.00	0.00	0.00	1.00	0.00
............................................................TGTTACAAGACCGGCATTATG........................................................................	21	1	1.00	0.00	0.00	1.00	0.00
.................................................................CAAGACAGGCATTATGGGAGTC..................................................................	22	1	1.00	0.00	0.00	1.00	0.00
............................................................TGTTACAAGACCGGCATTATGG.......................................................................	22	1	1.00	0.00	0.00	1.00	0.00
..................................................................AAGACCGGCATGATGAGAGT...................................................................	20	1	1.00	0.00	0.00	1.00	0.00
..........................AACCCGTAATTCCGAACTTGCG.........................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00
..........................AACCCGCAATTCCGAACTTGTG.........................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00
..........................AACACGTAATTCCGAACTTGTG.........................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00

droPer1

ATACTTATATATGGACCATTAACAGAAACCCGTAATTCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACT-GGTTTTTGG-CAACAAAATTT---------------------ATCACA	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
..........................AACCCGTAATTCCGAACTTGT..........................................................................................................	21	2	358.00	14.00	0.00	179.50	164.50	0.00
..........................AACCCGTAATTCCGAACTTGTGT........................................................................................................	23	2	110.00	19.00	0.00	35.50	55.50	0.00
.................................................................CAAGACCGGCATTATGGGAGTC..................................................................	22	2	97.00	19.00	0.00	14.50	63.50	0.00
..........................AACCCGTAATTCCGAACTTGTG.........................................................................................................	22	2	91.00	2.50	0.00	39.50	49.00	0.00
.................................................................CAGGACCGGCATTATGGGAGTC..................................................................	22	2	46.50	1.00	0.00	8.00	37.50	0.00
.................................................................CAAGACCGGCATTATGGGAGT...................................................................	21	2	31.50	13.50	0.00	5.50	12.50	0.00
...........................ACCCGTAATTCCGAACTTGT..........................................................................................................	20	2	9.50	0.00	0.00	5.00	4.50	0.00
.........................AAACCCGTAATTCCGAACTTGT..........................................................................................................	22	2	9.00	1.00	0.00	4.50	3.50	0.00
.................................................................CAAGACCGGCATTATGGGAG....................................................................	20	2	8.50	3.00	0.00	1.50	4.00	0.00
..........................AACCCGTAATTCCGAACTTGTGA........................................................................................................	23	2	6.50	0.50	0.00	2.00	4.00	0.00
..........................AACCCGTAATTCCGCACTTGT..........................................................................................................	21	2	6.50	0.00	0.00	2.50	4.00	0.00
...........................ACCCGTAATTCCGAACTTGTG.........................................................................................................	21	2	6.50	0.00	0.00	4.00	2.50	0.00
..........................AACCCGGAATTCCGAACTTGT..........................................................................................................	21	2	5.50	0.00	0.00	1.00	4.50	0.00
..........................AACCCGTAATTCCGACCTTGT..........................................................................................................	21	2	4.00	0.00	0.00	1.00	3.00	0.00
...........................ACCCGTAATTCCGAACTTGTGT........................................................................................................	22	2	3.00	0.00	0.00	1.50	1.50	0.00
.........................AAACCCGTAATTCCGAACTTGTGT........................................................................................................	24	2	2.50	1.00	0.00	1.00	0.50	0.00
.................................................................CAAGACCGGCATTATGGGAGTT..................................................................	22	2	2.50	0.50	0.00	0.50	1.50	0.00
..........................AACCCGTAATCCCGAACTTGT..........................................................................................................	21	2	2.50	0.00	0.00	1.00	1.50	0.00
.................................................................CAGGACCGGCATTGTGGGAGTC..................................................................	22	2	2.50	0.50	0.00	0.50	1.50	0.00
..........................AACCCGTAAATCCGAACTTGT..........................................................................................................	21	2	2.00	0.50	0.00	0.00	1.50	0.00
..........................AACCCGCAATTCCGAACTTGT..........................................................................................................	21	2	2.00	0.00	0.00	0.00	2.00	0.00
.................................................................CAGGACCGGCATTATGGGAGT...................................................................	21	2	2.00	0.00	0.00	0.50	1.50	0.00
..........................GACCCGTAATTCCGAACTTGT..........................................................................................................	21	2	2.00	0.00	0.00	0.00	2.00	0.00
..........................AACCCGTAATTCCGAACTTG...........................................................................................................	20	2	2.00	0.00	0.00	0.00	2.00	0.00
..........................AACCCGTAATTCCGAACTTTT..........................................................................................................	21	2	2.00	0.00	0.00	1.00	1.00	0.00
.................................................................CAAGACCGGCATTATGGGA.....................................................................	19	2	2.00	0.50	0.00	0.50	1.00	0.00
..........................AACCCGTAATGCCGAACTTGT..........................................................................................................	21	2	2.00	0.00	0.00	0.00	2.00	0.00
.................................................................CAAGACCGGCATTATGGGAGTCT.................................................................	23	2	1.50	0.50	0.00	0.00	1.00	0.00
................................................................ACAAGACCGGCATTATGGGAG....................................................................	21	2	1.50	1.00	0.00	0.00	0.50	0.00
....................................................................GACCGGCATTATGGGAGTCTGT...............................................................	22	2	1.50	0.50	0.00	0.00	1.00	0.00
..........................AACCCGTATTTCCGCACTTGT..........................................................................................................	21	2	1.50	0.00	0.00	0.50	1.00	0.00
.................................................................CAAGACCGGCATTATGGGAGA...................................................................	21	2	1.50	0.00	0.00	0.00	1.50	0.00
..........................AACCAGTAATTCCGAACTTGTGT........................................................................................................	23	2	1.50	0.00	0.00	0.00	1.50	0.00
..........................AAACCGTAATTCCGAACTTGT..........................................................................................................	21	2	1.50	0.00	0.00	0.50	1.00	0.00
............................................................TGTTACAAGACCGGCATTATGGG......................................................................	23	2	1.50	0.00	0.00	1.00	0.50	0.00
............................................................TGTTACAAGACCGGCATTATGG.......................................................................	22	2	1.50	0.50	0.00	0.50	0.50	0.00
..........................AACCCGTAATTCCGAAATTGT..........................................................................................................	21	2	1.50	0.00	0.00	0.50	1.00	0.00
.................................................................CGAGACCGGCATTATGGGAGTC..................................................................	22	2	1.50	0.00	0.00	0.00	1.50	0.00
................................................................ACAAGACCGGCATTATGGGAGT...................................................................	22	2	1.50	0.50	0.00	0.50	0.50	0.00
..........................AACCCGTAATTCCGCACTTGTG.........................................................................................................	22	2	1.50	0.00	0.00	0.50	1.00	0.00
..........................AACCCGTAAGTCCGAACTTGT..........................................................................................................	21	2	1.50	0.00	0.00	0.50	1.00	0.00
..........................AACCCGTAATTCCGAACTGGTGT........................................................................................................	23	2	1.50	0.00	0.00	0.00	1.50	0.00

droWil1

ATAGTCACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACT-GGTTTTTGGCCAACAAAATCG------------------A--AT--CG	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
..........................AACCCGTAAATCCGAACTTG...........................................................................................................	20	1	1282.00	1.00	1.00	19.00	1261.00
..........................AACCCGTAAATCCGAACTTGTG.........................................................................................................	22	1	1028.00	25.00	31.00	842.00	130.00
..........................AACCCGTAAATCCGAACTTGT..........................................................................................................	21	1	724.00	145.00	17.00	510.00	52.00
.................................................................CAAGACCGGCATTATGGGAGTC..................................................................	22	1	395.00	43.00	0.00	217.00	135.00
..........................AACCCGTAAATCCGAACTTGTGT........................................................................................................	23	1	262.00	134.00	5.00	123.00	0.00
..........................AACCCGTAAATCCGAACTTGTGA........................................................................................................	23	1	90.00	4.00	35.00	50.00	1.00
.................................................................CAAGACCGGCATTATGGGAGT...................................................................	21	1	83.00	20.00	0.00	60.00	3.00
.................................................................CAGGACCGGCATTATGGGAGTC..................................................................	22	1	63.00	1.00	0.00	50.00	12.00
...........................ACCCGTAAATCCGAACTTGTG.........................................................................................................	21	1	46.00	0.00	1.00	40.00	5.00
...........................ACCCGTAAATCCGAACTTGTGC........................................................................................................	22	1	37.00	0.00	0.00	37.00	0.00
.........................AAACCCGTAAATCCGAACTTGT..........................................................................................................	22	1	25.00	8.00	0.00	17.00	0.00
................................................................ACAAGACCGGCATTATGGGAGT...................................................................	22	1	18.00	5.00	0.00	12.00	1.00
..........................AACCCGTAAATCCGAACTGG...........................................................................................................	20	1	18.00	0.00	0.00	0.00	18.00
.........................AAACCCGTAAATCCGAACTTG...........................................................................................................	21	1	17.00	0.00	0.00	3.00	14.00
.................................................................CAAGACCGGCATTATGGGAG....................................................................	20	1	15.00	9.00	0.00	6.00	0.00
.........................AAACCCGTAAATCCGAACTTGTG.........................................................................................................	23	1	13.00	0.00	0.00	8.00	5.00
...........................ACCCGTAAATCCGAACTTG...........................................................................................................	19	1	11.00	0.00	0.00	1.00	10.00
.................................................................CAAGACCGGCATTATGGGAGTCT.................................................................	23	1	10.00	4.00	0.00	3.00	3.00
...........................ACCCGTAAATCCGAACTTGT..........................................................................................................	20	1	10.00	1.00	0.00	9.00	0.00
..........................AACCCTTAAATCCGAACTTGT..........................................................................................................	21	1	8.00	0.00	0.00	0.00	8.00
...........................ACCCGTAAATCCGAACTTGTGT........................................................................................................	22	1	7.00	2.00	0.00	5.00	0.00
..........................AACCCCTAAATCCGAACTTGT..........................................................................................................	21	1	7.00	0.00	0.00	0.00	7.00
................................................................ACAAGACCGGCATTATGGGAG....................................................................	21	1	6.00	1.00	0.00	5.00	0.00
..........................AACCCGTAAATCCGAACTTGTGAA.......................................................................................................	24	1	6.00	0.00	5.00	1.00	0.00
.............................CCGTAAATCCGAACTTGT..........................................................................................................	18	1	6.00	0.00	0.00	0.00	6.00
..........................AACCCTTAAATCCGAACTTGTG.........................................................................................................	22	1	5.00	0.00	0.00	4.00	1.00
..........................AACCCTTAAATCCGAACTTG...........................................................................................................	20	1	5.00	0.00	0.00	0.00	5.00
..........................AACCCGTAAATCAGAACTTG...........................................................................................................	20	1	5.00	0.00	0.00	0.00	5.00
..............................CGTAAATCCGAACTTGTG.........................................................................................................	18	1	5.00	0.00	0.00	1.00	4.00
..........................GACCCGTAAATCCGAACTTG...........................................................................................................	20	1	5.00	0.00	0.00	0.00	5.00
.................................................................CAAGACCGGCATTATGTGAGTC..................................................................	22	1	4.00	0.00	0.00	2.00	2.00
...........................AACCCTAAATCCGAACTTGT..........................................................................................................	20	1	4.00	0.00	0.00	0.00	4.00
..........................CACCCGTAAATCCGAACTTGTG.........................................................................................................	22	1	4.00	0.00	0.00	4.00	0.00
.................................................................CAAGACCGGCATTATGGG......................................................................	18	1	4.00	0.00	0.00	4.00	0.00
..........................AACCCGTAAATCCGAACT.............................................................................................................	18	1	4.00	0.00	0.00	0.00	4.00
..........................AACCCGTAAATCTGAACTTGT..........................................................................................................	21	1	4.00	0.00	0.00	0.00	4.00
...........................ACCCGTAAATCCGAACTTGTGA........................................................................................................	22	1	4.00	0.00	0.00	4.00	0.00
.................................................................CAAGACCGGCATTATGGGA.....................................................................	19	1	4.00	2.00	0.00	2.00	0.00
.........................CAACCCGTAAATCCGAACTTGTG.........................................................................................................	23	1	3.00	0.00	0.00	3.00	0.00
..........................AACCCGTAAATCCGCACTTGT..........................................................................................................	21	1	3.00	3.00	0.00	0.00	0.00
..........................AACCTGTAAATCCGAACTTGT..........................................................................................................	21	1	3.00	0.00	0.00	0.00	3.00
..........................GACCCGTAAATCCGAACTTGTG.........................................................................................................	22	1	3.00	0.00	0.00	3.00	0.00
..........................AACCCATAAATCCGAACTTGT..........................................................................................................	21	1	3.00	0.00	1.00	2.00	0.00
..........................AACCCGTAAATCCGAACTTGG..........................................................................................................	21	1	3.00	0.00	0.00	0.00	3.00
..........................AACCCGTAAATCCGAACTTTTG.........................................................................................................	22	1	3.00	0.00	0.00	3.00	0.00
...................................................................AGACCGGCATTATGGGAGTC..................................................................	20	1	3.00	1.00	0.00	0.00	2.00
.............................................GTGCTGTTTTATATCTGTTACA......................................................................................	22	1	3.00	0.00	0.00	0.00	3.00
..........................AACCCGTAAATCAGAACTTGT..........................................................................................................	21	1	3.00	0.00	0.00	3.00	0.00
..........................AACCTGTAAATCCGAACTTGTG.........................................................................................................	22	1	3.00	0.00	0.00	3.00	0.00
............................CCCGTAAATCCGAACTTGTG.........................................................................................................	20	1	3.00	0.00	0.00	1.00	2.00
..........................AAACCGTAAATCCGAACTTGT..........................................................................................................	21	1	3.00	0.00	1.00	2.00	0.00
..........................AACCCGTAAATCCTAACTTGTG.........................................................................................................	22	1	3.00	0.00	0.00	3.00	0.00
..........................AACCCGTAAATCAGAACTTGTGT........................................................................................................	23	1	3.00	0.00	0.00	3.00	0.00
..........................AACCCGTAAATCCGAACTTGTGG........................................................................................................	23	1	3.00	2.00	0.00	1.00	0.00
..................................................................AAGACCGGCATTATGGGAGTC..................................................................	21	1	3.00	1.00	0.00	2.00	0.00

droVir3

ATACTCAAATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACT-GGTTTTTGG-CAACAAAAGACATATAAAATATATTAACAAAAATGACA	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
..........................AACCCGTAAATCCGAACTTGT..........................................................................................................	21	1	1399.00	404.00	981.00	1.00	2.00	11.00
..........................AACCCGTAAATCCGAACTTGTG.........................................................................................................	22	1	712.00	67.00	593.00	2.00	17.00	33.00
..........................AACCCGTAAATCCGAACTTGTGT........................................................................................................	23	1	557.00	361.00	196.00	0.00	0.00	0.00
..........................AACCCGTAAATCCGAACTTG...........................................................................................................	20	1	419.00	4.00	34.00	0.00	109.00	272.00
.................................................................CAAGACCGGCATTATGGGAGTC..................................................................	22	1	145.00	85.00	25.00	0.00	14.00	21.00
.................................................................CAAGACCGGCATTATGGGAGT...................................................................	21	1	91.00	65.00	24.00	0.00	0.00	2.00
..........................AACCCGTAAATCCGAACTTGTGA........................................................................................................	23	1	68.00	9.00	57.00	1.00	0.00	1.00
..........................AACCCGTAAATCCGAACTTGTC.........................................................................................................	22	1	43.00	28.00	15.00	0.00	0.00	0.00
.........................AAACCCGTAAATCCGAACTTGT..........................................................................................................	22	1	23.00	2.00	21.00	0.00	0.00	0.00
..........................AACCCGTAAATCCGAACTTGC..........................................................................................................	21	1	16.00	3.00	13.00	0.00	0.00	0.00
.................................................................CAAGACCGGCATTATGGGAG....................................................................	20	1	16.00	11.00	5.00	0.00	0.00	0.00
..........................AACCCGTAAATCCGCACTTGT..........................................................................................................	21	1	14.00	2.00	12.00	0.00	0.00	0.00
...........................ACCCGTAAATCCGAACTTGT..........................................................................................................	20	1	13.00	5.00	8.00	0.00	0.00	0.00
...........................ACCCGTAAATCCGAACTTGTG.........................................................................................................	21	1	12.00	2.00	10.00	0.00	0.00	0.00
..........................AACCCGTAAATCCGAACTTGTCC........................................................................................................	23	1	10.00	7.00	3.00	0.00	0.00	0.00
..........................AACCCGTAAATCCGAACTTGTGTC.......................................................................................................	24	1	10.00	9.00	1.00	0.00	0.00	0.00
..........................AACCCGAAAATCCGAACTTGT..........................................................................................................	21	1	9.00	0.00	9.00	0.00	0.00	0.00
..........................AACCCGTAAATCCGAACTGG...........................................................................................................	20	1	9.00	0.00	1.00	0.00	2.00	6.00
..........................AACCCGGAAATCCGAACTTGT..........................................................................................................	21	1	8.00	0.00	8.00	0.00	0.00	0.00
..........................AAACCGTAAATCCGAACTTGT..........................................................................................................	21	1	8.00	0.00	8.00	0.00	0.00	0.00
..........................AACCCGTAAATCCGAACTTTTG.........................................................................................................	22	1	7.00	1.00	6.00	0.00	0.00	0.00
..........................AACCCGTAAATCCGTACTTGT..........................................................................................................	21	1	7.00	0.00	7.00	0.00	0.00	0.00
.................................................................CAAGACCGGCATTATGGGAGTCT.................................................................	23	1	6.00	2.00	3.00	0.00	0.00	1.00
..........................AACCCGCAAATCCGAACTTGT..........................................................................................................	21	1	6.00	1.00	5.00	0.00	0.00	0.00
..........................AACCCGAAAATCCGAACTTGTG.........................................................................................................	22	1	6.00	1.00	5.00	0.00	0.00	0.00
............................CCCGTAAATCCGAACTTGTG.........................................................................................................	20	1	6.00	0.00	0.00	0.00	1.00	5.00
..........................AACCCGTAAATCCGAACTTGTGC........................................................................................................	23	1	6.00	2.00	4.00	0.00	0.00	0.00
.................................................................CAAGACCGGCATTATGGGA.....................................................................	19	1	6.00	6.00	0.00	0.00	0.00	0.00
..........................AACCCGTAAATCCGAACTTGTTT........................................................................................................	23	1	5.00	5.00	0.00	0.00	0.00	0.00
..........................AACCCGTAAATCCGACCTTGT..........................................................................................................	21	1	5.00	0.00	5.00	0.00	0.00	0.00
.................................................................CAAGACCGGCATTATGGGT.....................................................................	19	1	5.00	2.00	3.00	0.00	0.00	0.00
.........................AAACCCGTAAATCCGAACTTGTG.........................................................................................................	23	1	5.00	0.00	5.00	0.00	0.00	0.00
..........................AACCCGTAAATCCGCACTTGTGT........................................................................................................	23	1	5.00	4.00	1.00	0.00	0.00	0.00
..........................AACCCGTAAATCCGAACTTGTGTT.......................................................................................................	24	1	5.00	2.00	3.00	0.00	0.00	0.00
..........................AACCCGTAAATCCGAACTTGTT.........................................................................................................	22	1	5.00	2.00	3.00	0.00	0.00	0.00
...........................ACCCGTAAATCCGAACTTG...........................................................................................................	19	1	4.00	0.00	0.00	0.00	0.00	4.00
..........................AACCCGTAAATCCGAACTTGCG.........................................................................................................	22	1	4.00	0.00	4.00	0.00	0.00	0.00
..........................AACCCGTAAATCCGAACT.............................................................................................................	18	1	4.00	0.00	1.00	0.00	0.00	3.00
..........................AACCCGTAAAGCCGAACTTGT..........................................................................................................	21	1	3.00	0.00	3.00	0.00	0.00	0.00
..........................AACCCGGAAATCCGAACTTGTG.........................................................................................................	22	1	3.00	0.00	3.00	0.00	0.00	0.00
..........................AACCCGTAAATCCGCACTTGTG.........................................................................................................	22	1	3.00	0.00	3.00	0.00	0.00	0.00
..........................GACCCGTAAATCCGAACTTGT..........................................................................................................	21	1	3.00	0.00	3.00	0.00	0.00	0.00
..........................AACCCGTAACTCCGAACTTGTG.........................................................................................................	22	1	3.00	0.00	3.00	0.00	0.00	0.00
..........................AACCCGTAAATCCGAACTTGA..........................................................................................................	21	1	3.00	0.00	3.00	0.00	0.00	0.00
.................................................................CAAGACCGGCATTATGGG......................................................................	18	1	3.00	0.00	2.00	0.00	0.00	1.00
..........................AACCCGTAAATCAGAACTTGT..........................................................................................................	21	1	3.00	0.00	3.00	0.00	0.00	0.00
..........................AACCCGAAAATCCGTACTTGT..........................................................................................................	21	1	3.00	0.00	3.00	0.00	0.00	0.00
..........................AACCCGTAAATCTGAACTTGT..........................................................................................................	21	1	3.00	0.00	2.00	0.00	0.00	1.00
..........................AACCCGTAAATCCGAACTTGCGT........................................................................................................	23	1	3.00	2.00	1.00	0.00	0.00	0.00
..........................AACCCTTAAATCCGAACTTGT..........................................................................................................	21	1	3.00	0.00	0.00	0.00	2.00	1.00
..........................AACCCGCAAATCCGAACTTGTG.........................................................................................................	22	1	3.00	0.00	3.00	0.00	0.00	0.00
..........................AACCCGTAAATCCGAACTTTT..........................................................................................................	21	1	3.00	1.00	2.00	0.00	0.00	0.00
..........................AACCCGTAAATCCGAACGTGT..........................................................................................................	21	1	3.00	0.00	3.00	0.00	0.00	0.00
..........................AACCCGTAAATCCGAACTGGTG.........................................................................................................	22	1	3.00	0.00	3.00	0.00	0.00	0.00
..........................AACCCGTACATCCGAACTTG...........................................................................................................	20	1	3.00	0.00	0.00	0.00	2.00	1.00
..........................GACCCGTAAATCCGAACTTG...........................................................................................................	20	1	3.00	0.00	0.00	0.00	1.00	2.00

droMoj3

ATACTTACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACTTGGTTTTTGG-CAACAAA-GCA---------------------AAGCAA	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
..........................AACCCGTAAATCCGAACTTGT..........................................................................................................	21	1	1913.00	395.00	1044.00	473.00	1.00
..........................AACCCGTAAATCCGAACTTGTGT........................................................................................................	23	1	650.00	312.00	239.00	99.00	0.00
..........................AACCCGTAAATCCGAACTTGTG.........................................................................................................	22	1	495.00	79.00	278.00	133.00	5.00
.................................................................CAAGACCGGCATTATGGGAGTC..................................................................	22	1	305.00	163.00	84.00	55.00	3.00
.................................................................CAAGACCGGCATTATGGGAGT...................................................................	21	1	131.00	77.00	36.00	17.00	1.00
..........................AACCCGTAAATCCGAACTTGTGA........................................................................................................	23	1	100.00	12.00	54.00	34.00	0.00
..........................AACCCGTAAATCCGAACTTGTGTC.......................................................................................................	24	1	78.00	63.00	10.00	5.00	0.00
..........................AACCCGTAAATCCGAACTTGTC.........................................................................................................	22	1	70.00	39.00	24.00	7.00	0.00
.................................................................CAGGACCGGCATTATGGGAGTC..................................................................	22	1	69.00	23.00	27.00	19.00	0.00
..........................AACCCGTAAATCCGCACTTGT..........................................................................................................	21	1	34.00	0.00	12.00	22.00	0.00
...........................ACCCGTAAATCCGAACTTGT..........................................................................................................	20	1	22.00	1.00	13.00	8.00	0.00
..........................AACCCGTAAATCCGAACTTG...........................................................................................................	20	1	21.00	1.00	11.00	9.00	0.00
.................................................................CAAGACCGGCATTATGGGAGTCT.................................................................	23	1	20.00	6.00	8.00	6.00	0.00
.........................AAACCCGTAAATCCGAACTTGT..........................................................................................................	22	1	17.00	2.00	9.00	6.00	0.00
...........................ACCCGTAAATCCGAACTTGTG.........................................................................................................	21	1	17.00	2.00	10.00	5.00	0.00
..........................AACCCGGAAATCCGAACTTGT..........................................................................................................	21	1	14.00	0.00	12.00	2.00	0.00
..........................AACCCGTAAATCCGAACTTGTT.........................................................................................................	22	1	14.00	3.00	6.00	5.00	0.00
.................................................................CAAGACCGGCATTATGGGAG....................................................................	20	1	12.00	5.00	3.00	4.00	0.00
..........................AACCCGTAAATCCGCACTTGTG.........................................................................................................	22	1	11.00	0.00	4.00	7.00	0.00
................................................................ACAAGACCGGCATTATGGGAGT...................................................................	22	1	10.00	3.00	5.00	2.00	0.00
..........................AACCCGTAAATCCGAACTTGTGTT.......................................................................................................	24	1	10.00	5.00	5.00	0.00	0.00
..........................AACCCGTAAATCCGACCTTGT..........................................................................................................	21	1	9.00	0.00	4.00	5.00	0.00
..........................AACCCGTAAATCTGAACTTGT..........................................................................................................	21	1	9.00	1.00	5.00	3.00	0.00
.................................................................CAGGACCGGCATTATGGGAGT...................................................................	21	1	8.00	1.00	4.00	3.00	0.00
..........................AACCCGTAAATCCGCACTTGTGT........................................................................................................	23	1	8.00	1.00	0.00	7.00	0.00
..........................AACCCGTAAATCCGTACTTGT..........................................................................................................	21	1	8.00	0.00	6.00	2.00	0.00
..........................AAACCGTAAATCCGAACTTGT..........................................................................................................	21	1	8.00	0.00	6.00	2.00	0.00
.........................CAACCCGTAAATCCGAACTTGT..........................................................................................................	22	1	8.00	1.00	6.00	1.00	0.00
..........................AACCCGTAAATCCGAACTTGC..........................................................................................................	21	1	7.00	1.00	6.00	0.00	0.00
..........................GACCCGTAAATCCGAACTTGT..........................................................................................................	21	1	6.00	0.00	4.00	2.00	0.00
..........................AACCCGTGAATCCGAACTTGT..........................................................................................................	21	1	6.00	0.00	4.00	2.00	0.00
.................................................................CAAGACCGGCATTATGGGA.....................................................................	19	1	6.00	4.00	1.00	1.00	0.00
..........................AACCCGCAAATCCGAACTTGT..........................................................................................................	21	1	5.00	0.00	5.00	0.00	0.00
..........................AACCCGTAAATCCGAACTTGCG.........................................................................................................	22	1	5.00	0.00	3.00	2.00	0.00
..........................AGCCCGTAAATCCGAACTTGT..........................................................................................................	21	1	5.00	0.00	4.00	1.00	0.00
..........................AACCCGTAAATCCGAACTTGTCC........................................................................................................	23	1	5.00	1.00	2.00	2.00	0.00
..........................AACCAGTAAATCCGAACTTGT..........................................................................................................	21	1	5.00	1.00	3.00	1.00	0.00
..........................AACCCGTACATCCGAACTTGT..........................................................................................................	21	1	5.00	0.00	2.00	3.00	0.00
..........................AACCCGTAAGTCCGAACTTGT..........................................................................................................	21	1	5.00	0.00	4.00	1.00	0.00
..........................AACCCGGAAATCCGAACTTGTG.........................................................................................................	22	1	4.00	0.00	4.00	0.00	0.00
..........................AACCCGTAAATCCGAAATTGT..........................................................................................................	21	1	4.00	0.00	1.00	3.00	0.00
..........................AACCCGTAAATCCGAACTTGG..........................................................................................................	21	1	4.00	0.00	2.00	2.00	0.00
..........................AACCCGTAACTCCGAACTTGT..........................................................................................................	21	1	4.00	0.00	3.00	1.00	0.00
...........................ACCCGTAAATCCGAACTTGTGT........................................................................................................	22	1	4.00	2.00	2.00	0.00	0.00
..........................AACCCGTAAATCCGAACTTTT..........................................................................................................	21	1	4.00	2.00	1.00	1.00	0.00
..........................AACCCGTAAATCCGAACTGGT..........................................................................................................	21	1	4.00	0.00	3.00	1.00	0.00
..................................................................AAGACCGGCATTATGGGAGTC..................................................................	21	1	4.00	2.00	0.00	2.00	0.00
..........................AACCCGTAAATCCGAACTTGTGC........................................................................................................	23	1	4.00	1.00	1.00	2.00	0.00
..........................AACCCGTAAAGCCGAACTTGT..........................................................................................................	21	1	3.00	0.00	3.00	0.00	0.00
..........................AACCCGTATATCCGAACTTGT..........................................................................................................	21	1	3.00	0.00	2.00	1.00	0.00
..........................AACACGTAAATCCGAACTTGT..........................................................................................................	21	1	3.00	0.00	3.00	0.00	0.00
.................................................................CAAGACCGGCATTATGTGAGTC..................................................................	22	1	3.00	0.00	1.00	2.00	0.00
..........................AACCCGTAAATCCGAACTTGTGAA.......................................................................................................	24	1	3.00	0.00	2.00	1.00	0.00
..........................AACCCGTAAATCCGAACTTGTGTA.......................................................................................................	24	1	3.00	0.00	3.00	0.00	0.00
..........................AACCTGTAAATCCGAACTTGT..........................................................................................................	21	1	3.00	1.00	1.00	1.00	0.00
..................................................................AGGACCGGCATTATGGGAGTCT.................................................................	22	1	3.00	0.00	3.00	0.00	0.00
..........................AATCCGTAAATCCGAACTTGT..........................................................................................................	21	1	3.00	0.00	2.00	1.00	0.00
..........................AACCCGTAAATCCGAACTTGTGTTT......................................................................................................	25	1	3.00	2.00	1.00	0.00	0.00
..........................AACCCGTAAATCCGAACTTAT..........................................................................................................	21	1	3.00	0.00	1.00	2.00	0.00
..........................AACCCGTAAATCCGAACGTGT..........................................................................................................	21	1	3.00	0.00	1.00	2.00	0.00
..........................AACCCGTAAACCCGAACTTGT..........................................................................................................	21	1	3.00	0.00	3.00	0.00	0.00
..........................AACCCGTAAATCCGAGCTTGT..........................................................................................................	21	1	3.00	0.00	2.00	1.00	0.00
..........................AACCCGTAAATCCGAATTTGT..........................................................................................................	21	1	3.00	1.00	2.00	0.00	0.00
..........................AACCCGTAAATCCGACCTTGTG.........................................................................................................	22	1	3.00	0.00	2.00	1.00	0.00
..........................AACCCGTAAATCCGAACTTCT..........................................................................................................	21	1	3.00	0.00	2.00	1.00	0.00

droGri2

ATACTTACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTTTATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACT-GGTTTTTGG-CAACAAAA--G---------------------ACTACA	Size	Hit Count	Total Norm	V109 Male body
..........................AACCCGTAAATCCGAACTTGT..........................................................................................................	21	1	66.00	66.00
..........................AACCCGTAAATCCGAACTTGTGT........................................................................................................	23	1	26.00	26.00
.................................................................CAAGACCGGCATTATGGGAGTC..................................................................	22	1	14.00	14.00
.................................................................CAAGACCGGCATTATGGGAGT...................................................................	21	1	12.00	12.00
..........................AACCCGTAAATCCGAACTTGTG.........................................................................................................	22	1	7.00	7.00
...........................ACCCGTAAATCCGAACTTGT..........................................................................................................	20	1	2.00	2.00
.........................AAACCCGTAAATCCGAACTTGT..........................................................................................................	22	1	2.00	2.00
.................................................................CAAGACTGGCATTATGGGAGTC..................................................................	22	1	1.00	1.00
..........................AACCCGTAAATCCGAACTTGTGA........................................................................................................	23	1	1.00	1.00
..........................AACCCGTAAATCCGAACTTGTGGTC......................................................................................................	25	1	1.00	1.00
..........................AACCCGTAAATCCGCACTTGT..........................................................................................................	21	1	1.00	1.00
..........................AACCCGTAAATCCGAACTTGTGC........................................................................................................	23	1	1.00	1.00
..........................AACCCGTACATCCGAACTTGT..........................................................................................................	21	1	1.00	1.00
..........................AACCCGTAAATCCGAACCTGTGA........................................................................................................	23	1	1.00	1.00
..........................AACCCGTAAATCCGAACATGT..........................................................................................................	21	1	1.00	1.00
..........................AACCAGTAAATCCGAACTTGTGT........................................................................................................	23	1	1.00	1.00
..........................AAACCGTAAATCCGAACTTGT..........................................................................................................	21	1	1.00	1.00
................................................................ACAAGACCGGCATTATGGGAGT...................................................................	22	1	1.00	1.00
.................................................................CAGGACCGGCATTATGGGAGT...................................................................	21	1	1.00	1.00
..............................................................................ATGGGAGTCTGTCAATGCAAACA....................................................	23	1	1.00	1.00
..............................................................................ATGGGAGTCTGTCAATGC.........................................................	18	1	1.00	1.00
..........................AACCCGTAACTCCGAACTTGT..........................................................................................................	21	1	1.00	1.00

Generated: 04/20/2012 at 05:23:10 EDT

dme-mir-100

chr2L:18471434-18471533 +

Known_mirbase

intergenic

20-way Fast Statistical Aligner (FSA) re-alignment

Visually pleasing best hits from LASTZ and MAF

Legend

Re-alignment after removal of non-confident orthologs

20-way Secondary Structure

Small RNA-seq read pileup