Possible Orthologs for dme-mir-100

droSim1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	chr2L:18160327-18160456 +	98.46	ATACTTACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACTGGTTTTTGGCAACAAAATCAATGACA ATACTTACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACTGGTTTTTGGCAACAAAATCAATGACA Size Hit Count Total Norm V044 Embryo M023 Head M024 Male body M025 Embryo ..........................AACCCGTAAATCCGAACTTG.................................................................................... 20 1 2167.00 0.00 1726.00 440.00 1.00 ..........................AACCCGTAAATCCGAACTTGTG.................................................................................. 22 1 226.00 1.00 171.00 54.00 0.00 .................................................................CAAGACCGGCATTATGGGAGTC........................................... 22 1 181.00 1.00 131.00 48.00 1.00 ..........................AACCCGTAAATCCGAACTTGT................................................................................... 21 1 65.00 0.00 56.00 9.00 0.00 ..........................AACCCGTAAATCCGAACTGG.................................................................................... 20 1 39.00 0.00 31.00 8.00 0.00 .........................AAACCCGTAAATCCGAACTTG.................................................................................... 21 1 23.00 0.00 21.00 2.00 0.00 ...........................ACCCGTAAATCCGAACTTG.................................................................................... 19 1 21.00 0.00 19.00 2.00 0.00 ............................CCCGTAAATCCGAACTTGT................................................................................... 19 1 18.00 0.00 16.00 2.00 0.00 ..........................AACCCGTAAATCCGAACT...................................................................................... 18 1 15.00 0.00 11.00 4.00 0.00 .................................................................CAAGACCGGCATTATGGGAGT............................................ 21 1 14.00 0.00 14.00 0.00 0.00 ............................CCCGTAAATCCGAACTTGTG.................................................................................. 20 1 10.00 0.00 7.00 3.00 0.00 ..........................AACCCTTAAATCCGAACTTGT................................................................................... 21 1 9.00 0.00 8.00 1.00 0.00 .................................................................CAAGACCGGCATTATGGGAGTCT.......................................... 23 1 8.00 0.00 7.00 1.00 0.00 ............................CCCGTAAATCCGAACTTG.................................................................................... 18 1 7.00 0.00 6.00 1.00 0.00 ..........................AACCCTTAAATCCGAACTTG.................................................................................... 20 1 6.00 0.00 5.00 1.00 0.00 ...........................ACCCGTAAATCCGAACTTGTG.................................................................................. 21 1 6.00 0.00 6.00 0.00 0.00 ..........................AGCCCGTAAATCCGAACTTG.................................................................................... 20 1 5.00 0.00 3.00 2.00 0.00 ..........................AACCCGTAAATCCGAACTTGG................................................................................... 21 1 5.00 0.00 4.00 1.00 0.00 ..........................GACCCGTAAATCCGAACTTG.................................................................................... 20 1 5.00 0.00 4.00 1.00 0.00 ..............................CGTAAATCCGAACTTGTG.................................................................................. 18 1 4.00 0.00 2.00 2.00 0.00 .............................CCGTAAATCCGAACTTGT................................................................................... 18 1 4.00 0.00 4.00 0.00 0.00 ..........................AACCCGTAAATCTGAACTTG.................................................................................... 20 1 4.00 0.00 3.00 1.00 0.00 .........................CAACCCGTAAATCCGAACTTGTG.................................................................................. 23 1 3.00 0.00 3.00 0.00 0.00 .................................................................CAAGACCGGCATTATGGGAG............................................. 20 1 3.00 0.00 3.00 0.00 0.00 .................................................................CAAGACCGGCATTATGGGAGGC........................................... 22 1 3.00 0.00 2.00 1.00 0.00 .........TGTGGACCATTGACAGAAACC.................................................................................................... 21 1 2.00 0.00 2.00 0.00 0.00 .........TATGGACCATTAACAGAAACC.................................................................................................... 21 1 2.00 0.00 0.00 2.00 0.00 .................................................................CAAGACCGGCATTATTGGAGTC........................................... 22 1 2.00 0.00 2.00 0.00 0.00 ..........................AACCTGTAAATCCGAACTTGT................................................................................... 21 1 2.00 0.00 0.00 2.00 0.00 ..........................AACCCGTAAATCCGAACTTGTGA................................................................................. 23 1 2.00 0.00 0.00 2.00 0.00 ..........................AACCCGTAAATCCGAGCTTG.................................................................................... 20 1 2.00 0.00 1.00 1.00 0.00 ..........................AACCCATAAATCCGAACTTG.................................................................................... 20 1 2.00 0.00 2.00 0.00 0.00 ...........................AACCCTAAATCCGAACTTGT................................................................................... 20 1 2.00 0.00 2.00 0.00 0.00 ..........................AACCCGTAAATCCGGACTTGT................................................................................... 21 1 2.00 0.00 2.00 0.00 0.00 .........................AAACCCTTAAATCCGAACTTGT................................................................................... 22 1 2.00 0.00 2.00 0.00 0.00 ..........................AACCCGTAAATCCGAACTTGC................................................................................... 21 1 2.00 0.00 2.00 0.00 0.00 ..........................AACCCGTAAATCCGAACTT..................................................................................... 19 1 1.00 0.00 1.00 0.00 0.00 .................................................................CAAGACCGGCATTATGGGAGTCC.......................................... 23 1 1.00 0.00 1.00 0.00 0.00 ..........................AACCCGTxxATCCGAACTTG.................................................................................... 18 1 1.00 0.00 0.00 1.00 0.00 .........................CAACCCGTAAATCCGAACTTG.................................................................................... 21 1 1.00 0.00 1.00 0.00 0.00 .................................................................CAAGACCGACATTATGGGAGT............................................ 21 1 1.00 0.00 0.00 1.00 0.00 ..........................AACCCGTAAATCCGCACTTG.................................................................................... 20 1 1.00 0.00 0.00 1.00 0.00 ..................................................................AATACCGGCATTATGGGAGTCT.......................................... 22 1 1.00 0.00 1.00 0.00 0.00 .............................CCGTAAATCCGAACTTGC................................................................................... 18 1 1.00 0.00 0.00 1.00 0.00 .........................................ACTTGTGCTGTTTTATATCTGTTACA............................................................... 26 1 1.00 0.00 0.00 1.00 0.00 ..........................AACCCGTAAATCCGAACC...................................................................................... 18 1 1.00 0.00 1.00 0.00 0.00 ..................................................................AAGACCGGCATTATGGGAGTC........................................... 21 1 1.00 0.00 1.00 0.00 0.00 .................................................................CAAGACCGTCATTATGGGAGTC........................................... 22 1 1.00 0.00 0.00 1.00 0.00 .................................................TGTTTTATATCTGTTACAAG............................................................. 20 1 1.00 0.00 1.00 0.00 0.00 ..........................AACCCGTAAATCCGAACTTGGG.................................................................................. 22 1 1.00 0.00 1.00 0.00 0.00 .................................................................CAAGACCGACATTATGGGAGTC........................................... 22 1 1.00 0.00 1.00 0.00 0.00 .................................................................CAAGACCGGCATTATGGGATTC........................................... 22 1 1.00 0.00 0.00 1.00 0.00 ..........................AACCCGAAAATCCGAACTTGT................................................................................... 21 1 1.00 0.00 1.00 0.00 0.00 ..........................AACCCGTAAATCCAAACTTG.................................................................................... 20 1 1.00 0.00 1.00 0.00 0.00 .................................................................CAATACCGGCATTATGGGAGTC........................................... 22 1 1.00 0.00 1.00 0.00 0.00 .......CATATGGACCATTAACAGAAACC.................................................................................................... 23 1 1.00 0.00 1.00 0.00 0.00 ..........................AGCCCGTAAATCCGAACTTGTG.................................................................................. 22 1 1.00 0.00 1.00 0.00 0.00 ............................CCCGTAAATCCGAACTTGTGT................................................................................. 21 1 1.00 0.00 1.00 0.00 0.00 .................................................................CAAGACCGGCATTATGGAT.............................................. 19 1 1.00 0.00 0.00 1.00 0.00 ..............................CGTAAATCCGAACTTGTGCTGT.............................................................................. 22 1 1.00 0.00 0.00 1.00 0.00 .................................................................CAAGACCGGCATTATGGGAGC............................................ 21 1 1.00 0.00 1.00 0.00 0.00 .............................CCGTAAATCCGAACTTATG.................................................................................. 19 1 1.00 0.00 1.00 0.00 0.00 ...........................................TTGTGCTGTTTTATATCTGTTACA............................................................... 24 1 1.00 0.00 1.00 0.00 0.00 ..............................CGTAAATCCGGACTTGTG.................................................................................. 18 1 1.00 0.00 0.00 1.00 0.00 ..........................AACCTGTAAATCCGAACTTG.................................................................................... 20 1 1.00 0.00 1.00 0.00 0.00 ............................CCCGTAAATCCGAACTTGC................................................................................... 19 1 1.00 0.00 1.00 0.00 0.00 ..........................AACCCTTAAATCCGAACTTGC................................................................................... 21 1 1.00 0.00 1.00 0.00 0.00 ...........................AACCGTAAATCCGAACTTG.................................................................................... 19 1 1.00 0.00 1.00 0.00 0.00 ...........................ACCCGTAAATCCGAACTGG.................................................................................... 19 1 1.00 0.00 0.00 1.00 0.00 ..........................AACCCGTAAATCCGAACTTGTGAA................................................................................ 24 1 1.00 0.00 1.00 0.00 0.00 ..........................AACCCxTAAATCCGAACTTGTGA................................................................................. 22 1 1.00 0.00 1.00 0.00 0.00 .........................AAACCCGTAAATCCGAACTTGTGAA................................................................................ 25 1 1.00 0.00 1.00 0.00 0.00 .........................AAACCCGTAAATCCGAACTTGTG.................................................................................. 23 1 1.00 0.00 1.00 0.00 0.00 ..........ATGGACCATTAACAGAAACC.................................................................................................... 20 1 1.00 0.00 0.00 1.00 0.00 ..........................AACCCGCAAATCCGAACTTG.................................................................................... 20 1 1.00 0.00 1.00 0.00 0.00 ..........................ATCCCGTAAATCCGAACTTG.................................................................................... 20 1 1.00 0.00 1.00 0.00 0.00 ..........................AACCCGTAAACCCGAACTTG.................................................................................... 20 1 1.00 0.00 0.00 1.00 0.00 ..........................AACCCGTAAATCCGAACTTA.................................................................................... 20 1 1.00 0.00 1.00 0.00 0.00 ..........................AACCCGTAAATCCGAACCTGC................................................................................... 21 1 1.00 0.00 1.00 0.00 0.00 ...................................................................AGACCGGCATTATGGGAGTC........................................... 20 1 1.00 0.00 0.00 1.00 0.00 ..........................AACCCGTAAATCAGAACTTGT................................................................................... 21 1 1.00 0.00 1.00 0.00 0.00 .................................................................CAAGGCCGGCATTATGGGAGTC........................................... 22 1 1.00 0.00 0.00 1.00 0.00 ..........................AACCCGTAAATCCGAACTTGTGT................................................................................. 23 1 1.00 0.00 1.00 0.00 0.00 ..............................CGTAAATCCGAACTTGTGA................................................................................. 19 1 1.00 0.00 0.00 1.00 0.00 ..........................AACCCGTAAATCCGAACCTG.................................................................................... 20 1 1.00 0.00 1.00 0.00 0.00 ..........................AACCCTTAAATCCGAACT...................................................................................... 18 1 1.00 0.00 0.00 1.00 0.00 ..........................AACCCGTAGATCCGATCTTG.................................................................................... 20 1 1.00 0.00 1.00 0.00 0.00

droSec1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	super_7:2092721-2092850 +	98.46	ATACTTACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACTGGTTTTTGGCAACAAAATCAATGACA ATACTTACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACTGGTTTTTGGCAACAAAATCAATGACA Size Hit Count Total Norm V113 Male body V114 Embryo V115 Head ..........................AACCCGTAAATCCGAACTTGT................................................................................... 21 1 1150.00 405.00 1.00 744.00 ..........................AACCCGTAAATCCGAACTTGTGT................................................................................. 23 1 635.00 399.00 0.00 236.00 ..........................AACCCGTAAATCCGAACTTGTG.................................................................................. 22 1 629.00 78.00 2.00 549.00 .................................................................CAAGACCGGCATTATGGGAGT............................................ 21 1 387.00 200.00 0.00 187.00 .................................................................CAAGACCGGCATTATGGGAGTC........................................... 22 1 320.00 178.00 0.00 142.00 ..........................AACCCGTAAATCCGAACTTGTGA................................................................................. 23 1 119.00 28.00 0.00 91.00 .........................AAACCCGTAAATCCGAACTTGT................................................................................... 22 1 34.00 3.00 0.00 31.00 ..........................AACCCGTAAATCCGAACTTG.................................................................................... 20 1 29.00 0.00 0.00 29.00 .................................................................CAAGACCGGCATTATGGGAG............................................. 20 1 28.00 12.00 0.00 16.00 ...........................ACCCGTAAATCCGAACTTGTG.................................................................................. 21 1 20.00 2.00 0.00 18.00 .................................................................CAAGACCGGCATTATGGGT.............................................. 19 1 17.00 2.00 0.00 15.00 ..........................AACCCGTAAATCCGAACTTGTGTT................................................................................ 24 1 12.00 8.00 0.00 4.00 .................................................................CAAGACCGGCATTATGGGAGTCT.......................................... 23 1 11.00 6.00 0.00 5.00 .................................................................CAAGACCGGCATTATGGGA.............................................. 19 1 11.00 6.00 0.00 5.00 ...........................ACCCGTAAATCCGAACTTGT................................................................................... 20 1 7.00 0.00 0.00 7.00 .........................AAACCCGTAAATCCGAACTTGTGT................................................................................. 24 1 7.00 4.00 0.00 3.00 .........................CAACCCGTAAATCCGAACTTGT................................................................................... 22 1 6.00 3.00 0.00 3.00 ..........................AACCCGTAAATCCGAACTTGTGC................................................................................. 23 1 5.00 3.00 0.00 2.00 .................................................................CAGGACCGGCATTATGGGAGTC........................................... 22 1 5.00 1.00 0.00 4.00 ..................................................................AAGACCGGCATTATGGGAGT............................................ 20 1 5.00 2.00 0.00 3.00 .................................................................CAAGACCGGCATTATGGGCGT............................................ 21 1 5.00 5.00 0.00 0.00 ................................................................ACAAGACCGGCATTATGGGAGT............................................ 22 1 4.00 2.00 0.00 2.00 ..........................AACCCGTAAATCCGAACTTGTT.................................................................................. 22 1 4.00 2.00 0.00 2.00 .........................CAACCCGTAAATCCGAACTTGTG.................................................................................. 23 1 3.00 0.00 0.00 3.00 ..........................AACCCCTAAATCCGAACTTGTG.................................................................................. 22 1 3.00 1.00 0.00 2.00 ...........................ACCCGTAAATCCGAACTTGTGC................................................................................. 22 1 3.00 0.00 0.00 3.00 ..........................AACCCTTAAATCCGAACTTGT................................................................................... 21 1 3.00 1.00 0.00 2.00 ..........................AACCCGTAAATCCGAACTTGTGAA................................................................................ 24 1 3.00 1.00 0.00 2.00 ..........................AACCCGTAAATCCGAACTAGT................................................................................... 21 1 3.00 3.00 0.00 0.00 ..........................AACCCGTAAATCCGAACTTGTGTA................................................................................ 24 1 3.00 1.00 0.00 2.00 ..........................AACCCGTAAATCCGGACTTGTGT................................................................................. 23 1 3.00 3.00 0.00 0.00 ..........................AACCCGTAAATCCGACCTTGT................................................................................... 21 1 3.00 2.00 0.00 1.00 ..................................................................AAGACCGGCATTATGGGAGTCT.......................................... 22 1 3.00 0.00 0.00 3.00 ..........................AACCCGTAAATCCGAACTCGT................................................................................... 21 1 3.00 3.00 0.00 0.00 .........................CAACCCGTAAATCCGAACTTGTGA................................................................................. 24 1 3.00 0.00 0.00 3.00 .........................AAACCCGTAAATCCGAACTTGTG.................................................................................. 23 1 3.00 0.00 0.00 3.00 .................................................................CAAGACCGGCATTATGGG............................................... 18 1 3.00 0.00 0.00 3.00 ..........................AACCCGTxAATCCGAACTTGT................................................................................... 20 1 3.00 0.00 0.00 3.00 ...........................ACCCGTAAATCCGAACTTGTGT................................................................................. 22 1 3.00 2.00 0.00 1.00 ..........................AACCCGTAAATCCGCACTTGTGT................................................................................. 23 1 3.00 1.00 0.00 2.00 ..........................AACCCGTAAATCCGAACTAGTGT................................................................................. 23 1 3.00 3.00 0.00 0.00 ..........................AACCAGTAAATCCGAACTTGT................................................................................... 21 1 3.00 2.00 0.00 1.00

droYak2 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	chr2R:4988205-4988334 +	98.46	ATACTTACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACTGGTTTTTGGCAACAAAATCAATGACA ATACTTACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACTGGTTTTTGGCAACAAAATCAATGACA Size Hit Count Total Norm V046 Embryo V052 Head V120 Male body V058 Head M026 Head ..........................AACCCGTAAATCCGAACTTGT................................................................................... 21 1 1272.00 0.00 293.00 177.00 788.00 14.00 ..........................AACCCGTAAATCCGAACTTGTG.................................................................................. 22 1 499.00 2.00 127.00 26.00 291.00 53.00 ..........................AACCCGTAAATCCGAACTTGTGT................................................................................. 23 1 468.00 0.00 59.00 229.00 180.00 0.00 ..........................AACCCGTAAATCCGAACTTG.................................................................................... 20 1 367.00 0.00 5.00 1.00 9.00 352.00 .................................................................CAAGACCGGCATTATGGGAGTC........................................... 22 1 149.00 0.00 14.00 71.00 41.00 23.00 .................................................................CAAGACCGGCATTATGGGAGT............................................ 21 1 50.00 0.00 8.00 30.00 11.00 1.00 ..........................AACCCGTAAATCCGAACTTGTGA................................................................................. 23 1 47.00 0.00 11.00 1.00 33.00 2.00 ..........................AACCCGTAAATCCGCACTTGT................................................................................... 21 1 45.00 0.00 7.00 0.00 38.00 0.00 ..........................AACCCGTAAATCCGACCTTGT................................................................................... 21 1 20.00 0.00 0.00 0.00 20.00 0.00 ...........................ACCCGTAAATCCGAACTTGT................................................................................... 20 1 19.00 0.00 6.00 3.00 10.00 0.00 ..........................AACCCGTAAATCCGCACTTGTG.................................................................................. 22 1 15.00 0.00 4.00 0.00 11.00 0.00 .........................AAACCCGTAAATCCGAACTTGT................................................................................... 22 1 14.00 0.00 3.00 3.00 8.00 0.00 ..........................AACCCGGAAATCCGAACTTGT................................................................................... 21 1 12.00 0.00 1.00 0.00 11.00 0.00 .................................................................CAAGACCGGCATTATGGGAG............................................. 20 1 12.00 0.00 4.00 3.00 5.00 0.00 ..........................AACCCGTAACTCCGAACTTGT................................................................................... 21 1 10.00 0.00 2.00 0.00 8.00 0.00 ..........................AACCCGTACATCCGAACTTGT................................................................................... 21 1 9.00 0.00 2.00 0.00 7.00 0.00 ..........................AACCCGTAAATCCGAACTTGC................................................................................... 21 1 8.00 0.00 1.00 0.00 7.00 0.00 ..........................AACCCGTAAATCCGCCCTTGT................................................................................... 21 1 7.00 0.00 0.00 0.00 7.00 0.00 ...........................ACCCGTAAATCCGAACTTGTG.................................................................................. 21 1 7.00 0.00 1.00 0.00 5.00 1.00 ..........................AACCCGTAAATCCGAACTGG.................................................................................... 20 1 7.00 0.00 0.00 0.00 0.00 7.00 ..........................AACCCGTAAATCCGAACTTGTGC................................................................................. 23 1 7.00 0.00 0.00 2.00 5.00 0.00 .................................................................CAAGACCGGCATTATGGGA.............................................. 19 1 7.00 0.00 2.00 3.00 2.00 0.00 ..........................AACCCGCAAATCCGAACTTGT................................................................................... 21 1 6.00 0.00 0.00 0.00 6.00 0.00 ..........................AACCCGTAAATCCGGACTTGT................................................................................... 21 1 6.00 0.00 0.00 0.00 6.00 0.00 ..........................AACCCGTCAATCCGAACTTGT................................................................................... 21 1 6.00 0.00 1.00 1.00 4.00 0.00 ..........................AACCCGTAAATCCGAACTTGTGTT................................................................................ 24 1 6.00 0.00 0.00 4.00 2.00 0.00 ..........................AACCCGTAAAGCCGAACTTGT................................................................................... 21 1 5.00 0.00 0.00 0.00 5.00 0.00 .........................AAACCCGTAAATCCGAACTTG.................................................................................... 21 1 5.00 0.00 0.00 0.00 0.00 5.00 .................................................................CAGGACCGGCATTATGGGAGTC........................................... 22 1 5.00 0.00 1.00 1.00 3.00 0.00 ..........................AACCCGTAAATCCGCACTTGTGT................................................................................. 23 1 5.00 0.00 1.00 1.00 3.00 0.00 ..........................AACCAGTAAATCCGAACTTGT................................................................................... 21 1 5.00 0.00 1.00 0.00 4.00 0.00 ..........................AACCCGTAAATCCGAACTTTT................................................................................... 21 1 5.00 0.00 1.00 0.00 4.00 0.00 ..........................AACCCGTAATTCCGAACTTGT................................................................................... 21 1 5.00 0.00 3.00 0.00 2.00 0.00 ..........................AACCCGTAATTCCGAACTTGTGT................................................................................. 23 1 5.00 0.00 1.00 0.00 4.00 0.00 .................................................................CAAGACCGGCATTATGGGAGTCT.......................................... 23 1 4.00 0.00 1.00 2.00 1.00 0.00 ..........................AACCCGTAAATCCGACCTTGTGT................................................................................. 23 1 4.00 0.00 0.00 0.00 4.00 0.00 ............................CCCGTAAATCCGAACTTGT................................................................................... 19 1 4.00 0.00 0.00 0.00 0.00 4.00 ..........................AACCCGTAAATCCGAACTTGG................................................................................... 21 1 4.00 0.00 0.00 0.00 2.00 2.00 ..........................AACCCGTAAATCCGAACT...................................................................................... 18 1 4.00 0.00 1.00 0.00 0.00 3.00 ..........................AACCCGTAAATCCGATCTTGT................................................................................... 21 1 4.00 0.00 0.00 0.00 4.00 0.00 ..........................AACCCGTAAATCTGAACTTGTG.................................................................................. 22 1 4.00 0.00 0.00 0.00 3.00 1.00 ..........................AAACCGTAAATCCGAACTTGTG.................................................................................. 22 1 4.00 0.00 0.00 0.00 4.00 0.00 ..........................AACCCGTAAATCCGAGCTTGT................................................................................... 21 1 4.00 0.00 0.00 0.00 4.00 0.00 ..........................AACCCGGAAATCCGAACTTGTG.................................................................................. 22 1 3.00 0.00 0.00 0.00 3.00 0.00 ..........................AACCCGTAATTCCGAACTTGTG.................................................................................. 22 1 3.00 0.00 1.00 0.00 2.00 0.00 ..........................AACCCGTAAATCCGAAATTGT................................................................................... 21 1 3.00 0.00 0.00 0.00 3.00 0.00 ..........................AACCCATAAATCCGAACTTGT................................................................................... 21 1 3.00 0.00 0.00 0.00 3.00 0.00 ..........................AACCCGTAAATCCGAACTCGT................................................................................... 21 1 3.00 0.00 0.00 0.00 3.00 0.00 ...........................ACCCGTAAATCCGAACTTG.................................................................................... 19 1 3.00 0.00 0.00 0.00 0.00 3.00 .........................AAACCCGTAAATCCGAACTTGTG.................................................................................. 23 1 3.00 0.00 0.00 0.00 3.00 0.00 ..........................AACCCGTAAATCCGAACTTTTG.................................................................................. 22 1 3.00 0.00 1.00 0.00 2.00 0.00 ..........................AACCCGTAAATCAGAACTTGT................................................................................... 21 1 3.00 0.00 2.00 0.00 1.00 0.00 ............................................................TGTTACAAGACCGGCATTATG................................................. 21 1 3.00 0.00 0.00 0.00 0.00 3.00 ..........................AACCCGTAAATCCGAACTT..................................................................................... 19 1 3.00 0.00 0.00 1.00 0.00 2.00 ..........................AACCCGTAGATCCGAACTTGT................................................................................... 21 1 3.00 0.00 1.00 0.00 2.00 0.00 ..........................AACCCGAAAATCCGAACTTGT................................................................................... 21 1 3.00 0.00 1.00 0.00 2.00 0.00 ..........................AACCCTTAAATCCGAACTTGT................................................................................... 21 1 3.00 0.00 0.00 0.00 0.00 3.00 ..........................AACCCGTAAATCCGAACTTAT................................................................................... 21 1 3.00 0.00 0.00 0.00 3.00 0.00 .........................CAACCCGTAAATCCGAACTTGT................................................................................... 22 1 3.00 0.00 2.00 0.00 1.00 0.00 ..........................AACCCGTAAGTCCGAACTTGT................................................................................... 21 1 3.00 0.00 0.00 0.00 3.00 0.00 ..........................AACCCGTAAATCCGACCTTGTG.................................................................................. 22 1 3.00 0.00 0.00 0.00 3.00 0.00

droEre2 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	scaffold_4845:5800004-5800133 -	98.46	ATACTTACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACTGGTTTTTGGCAACAAAATCAATGACA ATACTTACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACTGGTTTTTGGCAACAAAATCAATGACA Size Hit Count Total Norm V040 Embryo V060 Head V047 Embryo V108 Head ..........................AACCCGTAAATCCGAACTTGTG.................................................................................. 22 1 1412.00 0.00 136.00 0.00 1276.00 ..........................AACCCGTAAATCCGAACTTGT................................................................................... 21 1 1289.00 0.00 294.00 0.00 995.00 ..........................AACCCGTAAATCCGAACTTGTGT................................................................................. 23 1 518.00 0.00 88.00 0.00 430.00 .................................................................CAAGACCGGCATTATGGGAGTC........................................... 22 1 230.00 1.00 10.00 0.00 219.00 ..........................AACCCGTAAATCCGAACTTGTGA................................................................................. 23 1 159.00 0.00 15.00 0.00 144.00 .................................................................CAAGACCGGCATTATGGGAGT............................................ 21 1 127.00 0.00 18.00 0.00 109.00 ...........................ACCCGTAAATCCGAACTTGTG.................................................................................. 21 1 63.00 0.00 7.00 0.00 56.00 ..........................AACCCGTAAATCCGAACTTG.................................................................................... 20 1 38.00 0.00 3.00 0.00 35.00 ..........................AACCAGTAAATCCGAACTTGTG.................................................................................. 22 1 36.00 0.00 1.00 0.00 35.00 .................................................................CAAGACCGGCATTATGGG............................................... 18 1 35.00 0.00 0.00 0.00 35.00 .................................................................CAAGACCGGCATTATGGGT.............................................. 19 1 34.00 0.00 0.00 0.00 34.00 .........................AAACCCGTAAATCCGAACTTGT................................................................................... 22 1 27.00 0.00 8.00 0.00 19.00 .................................................................CAAGACCGGCATTATGGGAG............................................. 20 1 27.00 0.00 2.00 0.00 25.00 ..........................AACCAGTAAATCCGAACTTGT................................................................................... 21 1 25.00 0.00 2.00 0.00 23.00 ...........................ACCCGTAAATCCGAACTTGT................................................................................... 20 1 23.00 0.00 4.00 0.00 19.00 ...........................ACCCGTAAATCCGAACTTGTGC................................................................................. 22 1 16.00 0.00 0.00 0.00 16.00 ..........................AACCCGTAAATCCTAACTTGTG.................................................................................. 22 1 16.00 0.00 0.00 0.00 16.00 .................................................................CAAGACCGGCATTATGGGAGTCT.......................................... 23 1 15.00 0.00 0.00 0.00 15.00 ..........................AACCCGTAAATCCGAACTTGTGTT................................................................................ 24 1 13.00 0.00 1.00 0.00 12.00 ..........................AACCCGTAAATCCGAACTTGTGC................................................................................. 23 1 13.00 0.00 1.00 0.00 12.00 ..........................AACCCTTAAATCCGAACTTGTG.................................................................................. 22 1 12.00 0.00 0.00 0.00 12.00 .........................AAACCCGTAAATCCGAACTTGTG.................................................................................. 23 1 12.00 0.00 0.00 0.00 12.00 ................................................................ACAAGACCGGCATTATGGGAGT............................................ 22 1 12.00 0.00 2.00 0.00 10.00 ..........................AACCCGTAAATCAGAACTTGT................................................................................... 21 1 11.00 0.00 0.00 0.00 11.00 ..........................AACCAGTAAATCCGAACTTGTGT................................................................................. 23 1 11.00 0.00 0.00 0.00 11.00 ..........................AACACGTAAATCCGAACTTGT................................................................................... 21 1 10.00 0.00 2.00 0.00 8.00 ..........................AAACCGTAAATCCGAACTTGT................................................................................... 21 1 10.00 0.00 0.00 0.00 10.00 ..........................AACCCGTAAATCAGAACTTGTG.................................................................................. 22 1 10.00 0.00 0.00 0.00 10.00 ..........................AACCCGTAAATCCTAACTTGT................................................................................... 21 1 10.00 0.00 0.00 0.00 10.00 ..........................AACCCGTAAATCCTAACTTGTGT................................................................................. 23 1 9.00 0.00 0.00 0.00 9.00 .........................CAACCCGTAAATCCGAACTTGT................................................................................... 22 1 9.00 0.00 0.00 0.00 9.00 .................................................................CAAGACCGGCATTATGGGA.............................................. 19 1 9.00 0.00 1.00 0.00 8.00 ..........................AACCTGTAAATCCGAACTTGTG.................................................................................. 22 1 8.00 0.00 0.00 0.00 8.00 ..........................AACACGTAAATCCGAACTTGTG.................................................................................. 22 1 8.00 0.00 0.00 0.00 8.00 ..........................AACCCGTAAATCCGAAATTGTG.................................................................................. 22 1 8.00 0.00 0.00 0.00 8.00 ..........................AACCCGTAAATCCGAACTTGTT.................................................................................. 22 1 8.00 0.00 0.00 0.00 8.00 ..........................AACCCGTAAATCCGACCTTGTG.................................................................................. 22 1 8.00 0.00 2.00 0.00 6.00 .........................CAACCCGTAAATCCGAACTTGTG.................................................................................. 23 1 7.00 0.00 1.00 0.00 6.00 ..........................AACCCGTAAATCCGCACTTGT................................................................................... 21 1 7.00 0.00 4.00 0.00 3.00 ..........................AACCCGTAAATACGAACTTGTG.................................................................................. 22 1 7.00 0.00 1.00 0.00 6.00 ..........................AACCCGTAAATCCGAACTTTTG.................................................................................. 22 1 6.00 0.00 0.00 0.00 6.00 ..........................AACCCGTAAATCTGAACTTGTG.................................................................................. 22 1 6.00 0.00 0.00 0.00 6.00 ..........................AACCCGTAAATCCTAACTTGTGA................................................................................. 23 1 6.00 0.00 1.00 0.00 5.00 .........................AAACCCGTAAATCCGAACTTGTGT................................................................................. 24 1 5.00 0.00 2.00 0.00 3.00 .................................................................CAGGACCGGCATTATGGGAGTC........................................... 22 1 5.00 0.00 0.00 0.00 5.00 ..........................AACCCGTAAATCTGAACTTGT................................................................................... 21 1 5.00 0.00 3.00 0.00 2.00 ..........................AACCCTTAAATCCGAACTTGT................................................................................... 21 1 5.00 0.00 0.00 0.00 5.00 ..........................AAACCGTAAATCCGAACTTGTG.................................................................................. 22 1 5.00 0.00 0.00 0.00 5.00 ...........................ACCCGTAAATCCGAACTTGTGA................................................................................. 22 1 5.00 0.00 0.00 0.00 5.00 .................................................................CAAGACCGGCATTATTGGAGTC........................................... 22 1 4.00 0.00 0.00 0.00 4.00 ..........................AACCTGTAAATCCGAACTTGT................................................................................... 21 1 4.00 0.00 1.00 0.00 3.00 ..........................AACCCGTAAATCCGCACTTGTG.................................................................................. 22 1 4.00 0.00 1.00 0.00 3.00 ..........................GACCCGTAAATCCGAACTTGT................................................................................... 21 1 4.00 0.00 1.00 0.00 3.00 ..........................AACCCGTAAATCCGACCTTGT................................................................................... 21 1 4.00 0.00 4.00 0.00 0.00 .................................................................CAAGACCGGCATTATGTGAGT............................................ 21 1 4.00 0.00 1.00 0.00 3.00 .................................................................CAATACCGGCATTATGGGAGTC........................................... 22 1 4.00 0.00 0.00 0.00 4.00 ..........................CACCCGTAAATCCGAACTTGTG.................................................................................. 22 1 4.00 0.00 0.00 0.00 4.00 ..........................AACCCGTAAATCCGAACTTTT................................................................................... 21 1 4.00 0.00 1.00 0.00 3.00 ..............................CGTAAATCCGAACTTGTG.................................................................................. 18 1 4.00 0.00 1.00 0.00 3.00 ..........................AACCCGTAAATCAGAACTTGTGT................................................................................. 23 1 4.00 0.00 0.00 0.00 4.00 ..........................AACCCGTAAATCCGAACTTGTGG................................................................................. 23 1 4.00 0.00 1.00 0.00 3.00 ..........................AACCCGTAAATACGAACTTGT................................................................................... 21 1 4.00 0.00 0.00 0.00 4.00 .................................................................CAAGACCGGCATTATGGGAGTCA.......................................... 23 1 4.00 0.00 0.00 0.00 4.00 ..........................AACACGTAAATCCGAACTTGTGA................................................................................. 23 1 3.00 0.00 0.00 0.00 3.00 ..........................AAGCCGTAAATCCGAACTTGT................................................................................... 21 1 3.00 0.00 0.00 0.00 3.00 .................................................................AAAGACCGGCATTATGGGAGTC........................................... 22 1 3.00 0.00 0.00 0.00 3.00 ...........................ACCCGTAAATCCGAACTTGTGT................................................................................. 22 1 3.00 0.00 1.00 0.00 2.00 ..........................AACCCGTAAATCCGCACTTGTGT................................................................................. 23 1 3.00 0.00 2.00 0.00 1.00 ............................................................TGTTACAAGACCGGCATTATGG................................................ 22 1 3.00 0.00 0.00 0.00 3.00 ..........................AACCCGTAAATCCGAACTT..................................................................................... 19 1 3.00 0.00 1.00 0.00 2.00 ..........................AATCCGTAAATCCGAACTTGT................................................................................... 21 1 3.00 0.00 1.00 0.00 2.00 ..........................AACCCGTAAATCCGAACTCGTG.................................................................................. 22 1 3.00 0.00 1.00 0.00 2.00 ..........................AACCCGTAAATCCAAACTTGT................................................................................... 21 1 3.00 0.00 1.00 0.00 2.00 .................................................................CAAGACCGGCATTATGGT............................................... 18 1 3.00 0.00 0.00 0.00 3.00 ..........................AACACGTAAATCCGAACTTGTGT................................................................................. 23 1 3.00 0.00 0.00 0.00 3.00 .................................................................CAAGACCGGCATTATGGTAGTC........................................... 22 1 3.00 0.00 0.00 0.00 3.00

droFic1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
2	scf7180000454059:476369-476499 -	96.22	ATACTTACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACTGGTTTTTGGCAACAAAATCA-ATGACA ATACTTACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACTGGTTTTTGGCAGCAAAATCAAATGACA Size Hit Count Total Norm

droEug1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	scf7180000409447:413958-414087 +	96.21	ATACTTACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACTGGTTTTTGGCAACAAAATC-AATGACA ATACTTACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACTGGTT-TTGGCAACAAAATGGAATGACA Size Hit Count Total Norm

droBia1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	scf7180000302422:5216164-5216294 -	95.47	ATACTTACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACTGGTTTTTGGCAACAAAATCA-ATGACA ATACTTACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACTGGTTTTTGGCAACAAAATCGAGTAACA Size Hit Count Total Norm

droTak1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	scf7180000415867:746325-746455 +	96.22	ATACTTACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACTGGTTTTTGGCAACAAAATC-AATGACA ATACTTACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACTGGTTTTTGGCAACTAAATCTAATGACA Size Hit Count Total Norm

droEle1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	scf7180000491338:2438776-2438906 +	96.96	ATACTTACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACTGGTTTTTGGCAACAAAATCA-ATGACA ATACTTACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACTGGTTTTTGGCAACAAAATCAAATGACA Size Hit Count Total Norm

droRho1 - 2 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
2	scf7180000780227:11878-12008 +	96.96	ATACTTACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACTGGTTTTTGGCAACAAAATC-AATGACA ATACTTACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACTGGTTTTTGGCAACAAAATCGAATGACA Size Hit Count Total Norm
4	scf7180000759380:7806-7841 -	14.36	ATACTTACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACTGGTTTTTGGCAACAAAATCAATGACA GAACTTA-----------TCAAAAAAAAACCTTGTATCAGCAATTGT----------------------------------------------------------------------------------- Size Hit Count Total Norm

droKik1 - 2 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
2	scf7180000302401:73252-73384 -	93.35	ATACTTACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACTGGTTTTTGGCAACAAAATCAA---TGACA ATACTTACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACTGGTTTTTGGCAACAAAATCAAAACAGACA Size Hit Count Total Norm
1	scf7180000302401:72309-72321 -	7.03	ATACTTACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACTGGTTTTTGGCAACAAAATCAATGACA A---------------------------------------------------------------------------------------------------------------------AAACCAATCAAC Size Hit Count Total Norm	None	None

droAna3 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
2	scaffold_12916:2378756-2378885 +	94.67	ATACTTACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACTGGTTTTTGGCAACAAAATCAATGACA ATACTCACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTTTATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACTGGTTTTTGGCAACAAAATCAATCGAA Size Hit Count Total Norm V105 Male body V106 Head V055 Unknown V039 Embryo ..........................AACCCGTAAATCCGAACTTGT................................................................................... 21 1 1201.00 210.00 327.00 664.00 0.00 ..........................AACCCGTAAATCCGAACTTGTG.................................................................................. 22 1 625.00 39.00 478.00 106.00 2.00 ..........................AACCCGTAAATCCGAACTTGTGT................................................................................. 23 1 625.00 333.00 153.00 139.00 0.00 .................................................................CAAGACCGGCATTATGGGAGT............................................ 21 1 279.00 168.00 87.00 24.00 0.00 .................................................................CAAGACCGGCATTATGGGAGTC........................................... 22 1 251.00 132.00 75.00 44.00 0.00 ...........................ACCCGTAAATCCGAACTTGTG.................................................................................. 21 1 78.00 1.00 67.00 10.00 0.00 ..........................AACCCGTAAATCCGAACTTGTGA................................................................................. 23 1 71.00 2.00 44.00 25.00 0.00 .................................................................CAAGACCGGCATTATGGGA.............................................. 19 1 51.00 31.00 19.00 1.00 0.00 .................................................................CAAGACCGGCATTATGGGT.............................................. 19 1 41.00 9.00 31.00 1.00 0.00 .................................................................CAAGACCGGCATTATGGG............................................... 18 1 40.00 3.00 28.00 9.00 0.00 .................................................................CAAGACCGGCATTATGGGAG............................................. 20 1 39.00 24.00 10.00 5.00 0.00 ...........................ACCCGTAAATCCGAACTTGT................................................................................... 20 1 34.00 5.00 15.00 14.00 0.00 ................................................................ACAAGACCGGCATTATGGGAGT............................................ 22 1 26.00 11.00 15.00 0.00 0.00 ...........................ACCCGTAAATCCGAACTTGTGC................................................................................. 22 1 24.00 0.00 24.00 0.00 0.00 ..........................AACCCGTAAATCCGAACTTG.................................................................................... 20 1 20.00 3.00 9.00 8.00 0.00 ...........................ACCCGTAAATCCGAACTTGTGT................................................................................. 22 1 17.00 4.00 7.00 6.00 0.00 ..........................AACCCGTAAATCCGAACTTGTT.................................................................................. 22 1 12.00 0.00 9.00 3.00 0.00 ..........................AACCCGTAAATCCGAACTTGC................................................................................... 21 1 11.00 3.00 2.00 6.00 0.00 ..........................AACCCGTAAATCCGACCTTGT................................................................................... 21 1 10.00 1.00 0.00 9.00 0.00 ................................................................ACAAGACCGGCATTATGGGAG............................................. 21 1 9.00 5.00 2.00 2.00 0.00 .................................................................CAGGACCGGCATTATGGGAGTC........................................... 22 1 9.00 0.00 8.00 1.00 0.00 ..........................AACCCGGAAATCCGAACTTGT................................................................................... 21 1 9.00 0.00 0.00 9.00 0.00 ..........................AACCCGTAAATCCGAACTTGTGTT................................................................................ 24 1 9.00 5.00 2.00 2.00 0.00 .................................................................CAAGACCGGCATTATGGGAGTCT.......................................... 23 1 8.00 2.00 4.00 2.00 0.00 .........................AAACCCGTAAATCCGAACTTGT................................................................................... 22 1 8.00 1.00 3.00 4.00 0.00 ..........................AACCCGTAAATCCGAACTTGA................................................................................... 21 1 8.00 3.00 3.00 2.00 0.00 ..........................AACCCGCAAATCCGAACTTGT................................................................................... 21 1 6.00 0.00 0.00 6.00 0.00 ..........................AACCCGTAAATCAGAACTTGT................................................................................... 21 1 6.00 0.00 1.00 5.00 0.00 ..........................AACCAGTAAATCCGAACTTGT................................................................................... 21 1 6.00 2.00 0.00 4.00 0.00 .................................................................CAAGACCGGCATTATGGGAGTT........................................... 22 1 6.00 3.00 3.00 0.00 0.00 ................................................................ACAAGACCGGCATTATGGGA.............................................. 20 1 6.00 2.00 1.00 3.00 0.00 ..........................AACCCGTAAATCCGAACTTCT................................................................................... 21 1 6.00 0.00 0.00 6.00 0.00 ..........................AACACGTAAATCCGAACTTGT................................................................................... 21 1 5.00 1.00 2.00 2.00 0.00 ..........................AAACCGTAAATCCGAACTTGT................................................................................... 21 1 5.00 0.00 0.00 5.00 0.00 ..........................AACCCGTAAAGCCGAACTTGT................................................................................... 21 1 4.00 0.00 0.00 4.00 0.00 ..........................AACCCGTAAATCCGAACTTGG................................................................................... 21 1 4.00 0.00 0.00 4.00 0.00 ..........................AACCCGTAAATCCGAACTTGCGT................................................................................. 23 1 4.00 2.00 1.00 1.00 0.00 ..........................AACCCGTAAATCCGAACTTGAGT................................................................................. 23 1 4.00 3.00 1.00 0.00 0.00 ..........................AACCCGTAAATACGAACTTGT................................................................................... 21 1 4.00 0.00 4.00 0.00 0.00 ..........................AACCCGTAAATACGAACTTGTG.................................................................................. 22 1 4.00 1.00 3.00 0.00 0.00 ..........................AACCAGTAAATCCGAACTTGTG.................................................................................. 22 1 4.00 0.00 4.00 0.00 0.00 .................................................................CAAGACCGGCATTATGGGAGAC........................................... 22 1 4.00 3.00 0.00 1.00 0.00 ..........................AACCCGTAAATCCGCACTTGT................................................................................... 21 1 3.00 0.00 0.00 3.00 0.00 ..........................AACCCGGAAATCCGAACTTGTG.................................................................................. 22 1 3.00 0.00 0.00 3.00 0.00 ..........................AACCCGTAAGTCCGAACTTGTG.................................................................................. 22 1 3.00 0.00 2.00 1.00 0.00 ..........................AACCTGTAAATCCGAACTTGT................................................................................... 21 1 3.00 0.00 0.00 3.00 0.00 ..........................AACCCGTAAATGCGAACTTGTGT................................................................................. 23 1 3.00 2.00 0.00 1.00 0.00 ..........................AACCCGTAAATACGAACTTGTGT................................................................................. 23 1 3.00 2.00 1.00 0.00 0.00 ..........................GACCCGTAAATCCGAACTTGTG.................................................................................. 22 1 3.00 0.00 2.00 1.00 0.00 ..........................AACCCGTAAATCCGAACTTTTG.................................................................................. 22 1 3.00 0.00 2.00 1.00 0.00 ..........................AACCCGTAAATCTGAACTTGTGT................................................................................. 23 1 3.00 2.00 1.00 0.00 0.00 ..........................AACCCGTAAATCCGAACTT..................................................................................... 19 1 3.00 0.00 1.00 2.00 0.00 ..........................AACCCGCAAATCCGAACTTGTGT................................................................................. 23 1 3.00 3.00 0.00 0.00 0.00 ..........................AACCCGTAAATCCTAACTTGTGT................................................................................. 23 1 3.00 0.00 2.00 1.00 0.00 ..........................AACCCGTAAATCCAAACTTGT................................................................................... 21 1 3.00 0.00 1.00 2.00 0.00 ..........................AACCCGTAAATCAGAACTTGTG.................................................................................. 22 1 3.00 1.00 1.00 1.00 0.00 .........................CAACCCGTAAATCCGAACTTGT................................................................................... 22 1 3.00 0.00 0.00 3.00 0.00 ..........................AACCCGGAAATCCGAACTTGTGT................................................................................. 23 1 3.00 1.00 0.00 2.00 0.00 ..........................AAGCCGTAAATCCGAACTTGTG.................................................................................. 22 1 3.00 0.00 3.00 0.00 0.00 ..........................AACCCGTAAATCCTAACTTGT................................................................................... 21 1 3.00 0.00 3.00 0.00 0.00 ..........................AACCCGTAAATCCGAGCTTGT................................................................................... 21 1 3.00 1.00 1.00 1.00 0.00 ..........................AACCCGTACATCCGAACTTGT................................................................................... 21 1 3.00 0.00 1.00 2.00 0.00 ..........................AACCCGTAAATCCGAACTTGGG.................................................................................. 22 1 3.00 0.00 2.00 1.00 0.00 ..........................AACCCGTAAATCCGAACTTGTGC................................................................................. 23 1 3.00 0.00 3.00 0.00 0.00

droBip1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
2	scf7180000396430:324459-324586 +	96.92	ATACTTACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACTGGTTTTTGGCAACAAAATCAATGACA ATACTTACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTTTATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACTGGTTTTTGGCAACAAAATCAA--ACG Size Hit Count Total Norm

dp4 - 2 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
2	chr4_group3:3634738-3634867 +	94.67	ATACTTACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACTGGTTTTTGGCAACAAAATCAATGACA ATACTTATATATGGACCATTAACAGAAACCCGTAATTCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACTGGTTTTTGGCAACAAAATTTATCACA Size Hit Count Total Norm V112 Male body V043 Embryo V051 Head M022 Male body ..........................AACCCGTAATTCCGAACTTGT................................................................................... 21 1 318.00 23.00 0.00 295.00 0.00 ..........................AACCCGTAATTCCGAACTTGTG.................................................................................. 22 1 99.00 5.00 0.00 94.00 0.00 ..........................AACCCGTAATTCCGAACTTGTGT................................................................................. 23 1 87.00 28.00 0.00 59.00 0.00 .................................................................CAAGACCGGCATTATGGGAGTC........................................... 22 1 84.00 49.00 0.00 32.00 3.00 .................................................................CAAGACCGGCATTATGGGAGT............................................ 21 1 56.00 39.00 0.00 17.00 0.00 .................................................................CAGGACCGGCATTATGGGAGTC........................................... 22 1 25.00 9.00 0.00 16.00 0.00 .................................................................CAAGACCGGCATTATGGGAG............................................. 20 1 18.00 10.00 0.00 8.00 0.00 ...........................ACCCGTAATTCCGAACTTGT................................................................................... 20 1 11.00 2.00 0.00 9.00 0.00 ...........................ACCCGTAATTCCGAACTTGTG.................................................................................. 21 1 11.00 3.00 0.00 8.00 0.00 .................................................................CAAGACCGGCATTATGGGA.............................................. 19 1 7.00 6.00 0.00 1.00 0.00 ............................................................TGTTACAAGACCGGCATTATGGG............................................... 23 1 6.00 0.00 0.00 6.00 0.00 ..........................AACCCGTAATTCCGCACTTGT................................................................................... 21 1 6.00 0.00 0.00 6.00 0.00 .........................AAACCCGTAATTCCGAACTTGT................................................................................... 22 1 5.00 0.00 0.00 5.00 0.00 ..........................AACCCGGAATTCCGAACTTGT................................................................................... 21 1 5.00 0.00 0.00 5.00 0.00 ..........................AACCCGTAAATCCGAACTTGTGT................................................................................. 23 1 4.00 3.00 0.00 1.00 0.00 ..........................AACCCGTAATTCCGAACTTG.................................................................................... 20 1 4.00 0.00 0.00 4.00 0.00 ..........................AACCCGTAAATCCGAACTTGTG.................................................................................. 22 1 3.00 1.00 1.00 1.00 0.00 ..........................AACCCGTAAATCCGAACTTGT................................................................................... 21 1 3.00 0.00 0.00 3.00 0.00 .................................................................CAAGACCGGCATTATGGGAGCC........................................... 22 1 2.00 0.00 0.00 2.00 0.00 ..........................AACCCGCAATTCCGAACTTGT................................................................................... 21 1 2.00 0.00 0.00 2.00 0.00 ..........................AACCCGTAATTCCGAACTTGTT.................................................................................. 22 1 2.00 0.00 0.00 2.00 0.00 .................................................................CAAGACCGGCGTTATGGGAGT............................................ 21 1 2.00 2.00 0.00 0.00 0.00 ................................................................ACAAGACCGGCATTATGGGAGT............................................ 22 1 2.00 2.00 0.00 0.00 0.00 ..........................AAACCGTAATTCCGAACTTGT................................................................................... 21 1 2.00 0.00 0.00 2.00 0.00 ..........................AACCCGTAATTCAGAACTTGT................................................................................... 21 1 2.00 0.00 0.00 2.00 0.00 ..........................AACCCGTAATTCCGAACTTGC................................................................................... 21 1 2.00 0.00 0.00 2.00 0.00 ..................................................................AAGACCGGCATTATGGGAGTC........................................... 21 1 2.00 2.00 0.00 0.00 0.00 ..........................AACCCGTAATTCCGAACTTGTGA................................................................................. 23 1 2.00 0.00 0.00 2.00 0.00 ..................................................................AGGACCGGCATTATGGGAGTC........................................... 21 1 2.00 1.00 0.00 1.00 0.00 ...........................ACCCGTAATTCCGAACTTGTGC................................................................................. 22 1 2.00 1.00 0.00 1.00 0.00 ..........................AACCCGTAATTCCGACCTTGTGT................................................................................. 23 1 1.00 0.00 0.00 1.00 0.00 ..........................AAACCGTAATTCCGACCTTGT................................................................................... 21 1 1.00 0.00 0.00 1.00 0.00 .................................................................CAGGACCGGCATTGTGGGAGT............................................ 21 1 1.00 0.00 0.00 1.00 0.00 ..........................AACCAGTAATTCCGAACTTGTG.................................................................................. 22 1 1.00 0.00 0.00 1.00 0.00 ..........................AACCCGTAAGTCCGAACTTGTG.................................................................................. 22 1 1.00 0.00 0.00 1.00 0.00 ..........................AACCTGTAATTCCGAACTTGTG.................................................................................. 22 1 1.00 0.00 0.00 1.00 0.00 ..........................AACCCGTAATTCCTAACTTGTG.................................................................................. 22 1 1.00 0.00 0.00 1.00 0.00 .................................................................CAAGACCGGGATTATGGGA.............................................. 19 1 1.00 1.00 0.00 0.00 0.00 .................................................................CAAGACCGGCATTATGAGAGTC........................................... 22 1 1.00 0.00 0.00 1.00 0.00 ................................................................ACAAGACCGGCATTATGGGAG............................................. 21 1 1.00 0.00 0.00 1.00 0.00 ..........................GACCCGTAATTCCGAACTTGTGT................................................................................. 23 1 1.00 0.00 0.00 1.00 0.00 ....................................................................GACCGGCATTATGGGAGTCTGT........................................ 22 1 1.00 0.00 0.00 1.00 0.00 ..............................CGTAGATCCGAACTTGTG.................................................................................. 18 1 1.00 0.00 1.00 0.00 0.00 ..........................AACCCGGAATTCCGAACTTGTG.................................................................................. 22 1 1.00 0.00 0.00 1.00 0.00 .................................................................TAAGACCGGCATTATGGGAGTCC.......................................... 23 1 1.00 0.00 0.00 1.00 0.00 ..........................AAACCGTAATTCCGAACTTGTGT................................................................................. 23 1 1.00 0.00 0.00 1.00 0.00 ..........................AACCCGTAATTCCCAACTTGT................................................................................... 21 1 1.00 0.00 0.00 1.00 0.00 .......................................................................................TGTCAATGCAAACTACTAGTT...................... 21 1 1.00 0.00 0.00 1.00 0.00 ..........................AACCCGTAATTCCGATCTTGT................................................................................... 21 1 1.00 0.00 0.00 1.00 0.00 ..........................AAGCCGTAATTCCGAACTCGTG.................................................................................. 22 1 1.00 0.00 0.00 1.00 0.00 ..........................AACCCGTAATTCTGAAATTGT................................................................................... 21 1 1.00 0.00 0.00 1.00 0.00 ..........................AACCCGTAACTCCGAACTAGT................................................................................... 21 1 1.00 0.00 0.00 1.00 0.00 ..........................AACCCGTAATTCCCCACTTGT................................................................................... 21 1 1.00 0.00 0.00 1.00 0.00 .................................................................CGGGACCGGCATTATGGGAGTC........................................... 22 1 1.00 1.00 0.00 0.00 0.00 ..........................GACCCGTAATTCCGAACTTGTG.................................................................................. 22 1 1.00 0.00 0.00 1.00 0.00 .................................................................CAGGACCGGCATTATGGGAGT............................................ 21 1 1.00 0.00 0.00 1.00 0.00 ..........................AACCCGTAATTCCGAACTCGTGT................................................................................. 23 1 1.00 0.00 0.00 1.00 0.00 ..........................AAGCCGTAATTCCGAACTTGTGT................................................................................. 23 1 1.00 0.00 0.00 1.00 0.00 ..........................AACCCGTAATTACGAACTAGTG.................................................................................. 22 1 1.00 0.00 0.00 1.00 0.00 ..........................AACCCGTAATTCCGACCTTGT................................................................................... 21 1 1.00 0.00 0.00 1.00 0.00 ..........................AACCCGTAATTCCCAACTTGTG.................................................................................. 22 1 1.00 0.00 0.00 1.00 0.00 .........................CAACCCGTAATTCCGAACTTGT................................................................................... 22 1 1.00 0.00 0.00 1.00 0.00 ..........................GACCCGTAATTCCGAACTTGT................................................................................... 21 1 1.00 1.00 0.00 0.00 0.00 ..........................AACCCGTAATTCCGAGCTTGT................................................................................... 21 1 1.00 0.00 0.00 1.00 0.00 ..........................AACCCGTAATTCCGAACCTGTG.................................................................................. 22 1 1.00 0.00 0.00 1.00 0.00 ..........................AACCCGTCATTCCGAACTTGT................................................................................... 21 1 1.00 0.00 0.00 1.00 0.00 .....................................................................ACCGGCATTATGGGAGTCTGT........................................ 21 1 1.00 0.00 0.00 1.00 0.00 ...........................ACCCGTAATTCCGAACTTGTGT................................................................................. 22 1 1.00 1.00 0.00 0.00 0.00 ................................................................ACAGGACCGGCATTATGGGAGT............................................ 22 1 1.00 0.00 0.00 1.00 0.00 ..........................AACCTGTAATTCCGAACTTGT................................................................................... 21 1 1.00 0.00 0.00 1.00 0.00 ..........................AACCCGTAATTCCGAACTAGTGT................................................................................. 23 1 1.00 0.00 0.00 1.00 0.00 ..........................AACCCGTAATTCCGTACTTGTGT................................................................................. 23 1 1.00 0.00 0.00 1.00 0.00 ..........................AACCCGTAATACCGATCTTGT................................................................................... 21 1 1.00 0.00 0.00 1.00 0.00 ...........................ACCCGTAATTCCGCACTTGTG.................................................................................. 21 1 1.00 0.00 0.00 1.00 0.00 ..........................AACCCGTAATTCCGAACTCGT................................................................................... 21 1 1.00 0.00 0.00 1.00 0.00 ..........................AACCCGTAAGTCCGAACTTGT................................................................................... 21 1 1.00 0.00 0.00 1.00 0.00 .........................AAACCCGTAATTCCGAACTTGTGT................................................................................. 24 1 1.00 0.00 0.00 1.00 0.00 ..........................AACCCGTAGTTCCGGACTTGT................................................................................... 21 1 1.00 0.00 0.00 1.00 0.00 ...........................ACCCGTAATTCCGAACTTGTTT................................................................................. 22 1 1.00 0.00 0.00 1.00 0.00 ..........................AACCCGTAGTTCCGACCTTGT................................................................................... 21 1 1.00 0.00 0.00 1.00 0.00 ..........................AACCCGTAATTCCTAACTTGTGT................................................................................. 23 1 1.00 1.00 0.00 0.00 0.00 ..........................AACCCGTAATTCCGAACTTTT................................................................................... 21 1 1.00 0.00 0.00 1.00 0.00 ..........................AACCAGTAAGTCCGAACTTGT................................................................................... 21 1 1.00 0.00 0.00 1.00 0.00 ..........................AACCCGTAATTCCGAAGTTGT................................................................................... 21 1 1.00 0.00 0.00 1.00 0.00 ........................................................TATCTGTTACAAGACCGGCATTATGGGA.............................................. 28 1 1.00 1.00 0.00 0.00 0.00 ..........................AAACCGTAATTCCGAACTCGTG.................................................................................. 22 1 1.00 0.00 0.00 1.00 0.00 .................................................................CAAGACCGGCATTATGGG............................................... 18 1 1.00 0.00 0.00 1.00 0.00 ..........................AACCCGTAATTCCGAACGTG.................................................................................... 20 1 1.00 0.00 0.00 1.00 0.00 .................................................................CAAGACCGGCCTTATGGGAGTC........................................... 22 1 1.00 1.00 0.00 0.00 0.00 ..........................AACCCGTAATTCCGAACCTGT................................................................................... 21 1 1.00 0.00 0.00 1.00 0.00 ............................................................TGTTACAAGACCGGCATTATG................................................. 21 1 1.00 0.00 0.00 1.00 0.00 .................................................................CAAGACAGGCATTATGGGAGTC........................................... 22 1 1.00 0.00 0.00 1.00 0.00 ............................................................TGTTACAAGACCGGCATTATGG................................................ 22 1 1.00 0.00 0.00 1.00 0.00 ..................................................................AAGACCGGCATGATGAGAGT............................................ 20 1 1.00 0.00 0.00 1.00 0.00 ..........................AACCCGTAATTCCGAACTTGCG.................................................................................. 22 1 1.00 0.00 0.00 1.00 0.00 ..........................AACCCGCAATTCCGAACTTGTG.................................................................................. 22 1 1.00 0.00 0.00 1.00 0.00 ..........................AACACGTAATTCCGAACTTGTG.................................................................................. 22 1 1.00 0.00 0.00 1.00 0.00
3	chr4_group3:3635151-3635166 +	6.25	ATACTTACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACTGGTTTTTGGCAACAAAATCAATGACA A------------------------------------------------------------------------------------------------------------------ATCAAGTGAGCGTTA Size Hit Count Total Norm V112 Male body V043 Embryo V051 Head M022 Male body	None	None

droPer1 - 4 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
6	super_2335:1243-1372 +	94.67	ATACTTACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACTGGTTTTTGGCAACAAAATCAATGACA ATACTTATATATGGACCATTAACAGAAACCCGTAATTCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACTGGTTTTTGGCAACAAAATTTATCACA Size Hit Count Total Norm V111 Male body V042 Embryo V050 Head V057 Head M021 Embryo ..........................AACCCGTAATTCCGAACTTGT................................................................................... 21 2 358.00 14.00 0.00 179.50 164.50 0.00 ..........................AACCCGTAATTCCGAACTTGTGT................................................................................. 23 2 110.00 19.00 0.00 35.50 55.50 0.00 .................................................................CAAGACCGGCATTATGGGAGTC........................................... 22 2 97.00 19.00 0.00 14.50 63.50 0.00 ..........................AACCCGTAATTCCGAACTTGTG.................................................................................. 22 2 91.00 2.50 0.00 39.50 49.00 0.00 .................................................................CAGGACCGGCATTATGGGAGTC........................................... 22 2 46.50 1.00 0.00 8.00 37.50 0.00 .................................................................CAAGACCGGCATTATGGGAGT............................................ 21 2 31.50 13.50 0.00 5.50 12.50 0.00 ...........................ACCCGTAATTCCGAACTTGT................................................................................... 20 2 9.50 0.00 0.00 5.00 4.50 0.00 .........................AAACCCGTAATTCCGAACTTGT................................................................................... 22 2 9.00 1.00 0.00 4.50 3.50 0.00 .................................................................CAAGACCGGCATTATGGGAG............................................. 20 2 8.50 3.00 0.00 1.50 4.00 0.00 ..........................AACCCGTAATTCCGAACTTGTGA................................................................................. 23 2 6.50 0.50 0.00 2.00 4.00 0.00 ..........................AACCCGTAATTCCGCACTTGT................................................................................... 21 2 6.50 0.00 0.00 2.50 4.00 0.00 ...........................ACCCGTAATTCCGAACTTGTG.................................................................................. 21 2 6.50 0.00 0.00 4.00 2.50 0.00 ..........................AACCCGGAATTCCGAACTTGT................................................................................... 21 2 5.50 0.00 0.00 1.00 4.50 0.00 ..........................AACCCGTAATTCCGACCTTGT................................................................................... 21 2 4.00 0.00 0.00 1.00 3.00 0.00 ...........................ACCCGTAATTCCGAACTTGTGT................................................................................. 22 2 3.00 0.00 0.00 1.50 1.50 0.00 .........................AAACCCGTAATTCCGAACTTGTGT................................................................................. 24 2 2.50 1.00 0.00 1.00 0.50 0.00 .................................................................CAAGACCGGCATTATGGGAGTT........................................... 22 2 2.50 0.50 0.00 0.50 1.50 0.00 ..........................AACCCGTAATCCCGAACTTGT................................................................................... 21 2 2.50 0.00 0.00 1.00 1.50 0.00 .................................................................CAGGACCGGCATTGTGGGAGTC........................................... 22 2 2.50 0.50 0.00 0.50 1.50 0.00 ..........................AACCCGTAAATCCGAACTTGT................................................................................... 21 2 2.00 0.50 0.00 0.00 1.50 0.00 ..........................AACCCGCAATTCCGAACTTGT................................................................................... 21 2 2.00 0.00 0.00 0.00 2.00 0.00 .................................................................CAGGACCGGCATTATGGGAGT............................................ 21 2 2.00 0.00 0.00 0.50 1.50 0.00 ..........................GACCCGTAATTCCGAACTTGT................................................................................... 21 2 2.00 0.00 0.00 0.00 2.00 0.00 ..........................AACCCGTAATTCCGAACTTG.................................................................................... 20 2 2.00 0.00 0.00 0.00 2.00 0.00 ..........................AACCCGTAATTCCGAACTTTT................................................................................... 21 2 2.00 0.00 0.00 1.00 1.00 0.00 .................................................................CAAGACCGGCATTATGGGA.............................................. 19 2 2.00 0.50 0.00 0.50 1.00 0.00 ..........................AACCCGTAATGCCGAACTTGT................................................................................... 21 2 2.00 0.00 0.00 0.00 2.00 0.00 .................................................................CAAGACCGGCATTATGGGAGTCT.......................................... 23 2 1.50 0.50 0.00 0.00 1.00 0.00 ................................................................ACAAGACCGGCATTATGGGAG............................................. 21 2 1.50 1.00 0.00 0.00 0.50 0.00 ....................................................................GACCGGCATTATGGGAGTCTGT........................................ 22 2 1.50 0.50 0.00 0.00 1.00 0.00 ..........................AACCCGTATTTCCGCACTTGT................................................................................... 21 2 1.50 0.00 0.00 0.50 1.00 0.00 .................................................................CAAGACCGGCATTATGGGAGA............................................ 21 2 1.50 0.00 0.00 0.00 1.50 0.00 ..........................AACCAGTAATTCCGAACTTGTGT................................................................................. 23 2 1.50 0.00 0.00 0.00 1.50 0.00 ..........................AAACCGTAATTCCGAACTTGT................................................................................... 21 2 1.50 0.00 0.00 0.50 1.00 0.00 ............................................................TGTTACAAGACCGGCATTATGGG............................................... 23 2 1.50 0.00 0.00 1.00 0.50 0.00 ............................................................TGTTACAAGACCGGCATTATGG................................................ 22 2 1.50 0.50 0.00 0.50 0.50 0.00 ..........................AACCCGTAATTCCGAAATTGT................................................................................... 21 2 1.50 0.00 0.00 0.50 1.00 0.00 .................................................................CGAGACCGGCATTATGGGAGTC........................................... 22 2 1.50 0.00 0.00 0.00 1.50 0.00 ................................................................ACAAGACCGGCATTATGGGAGT............................................ 22 2 1.50 0.50 0.00 0.50 0.50 0.00 ..........................AACCCGTAATTCCGCACTTGTG.................................................................................. 22 2 1.50 0.00 0.00 0.50 1.00 0.00 ..........................AACCCGTAAGTCCGAACTTGT................................................................................... 21 2 1.50 0.00 0.00 0.50 1.00 0.00 ..........................AACCCGTAATTCCGAACTGGTGT................................................................................. 23 2 1.50 0.00 0.00 0.00 1.50 0.00
2	super_1:5115309-5115438 +	94.67	ATACTTACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACTGGTTTTTGGCAACAAAATCAATGACA ATACTTATATATGGACCATTAACAGAAACCCGTAATTCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACTGGTTTTTGGCAACAAAATTTATCACA Size Hit Count Total Norm V111 Male body V042 Embryo V050 Head V057 Head M021 Embryo ..........................AACCCGTAATTCCGAACTTGT................................................................................... 21 2 358.00 14.00 0.00 179.50 164.50 0.00 ..........................AACCCGTAATTCCGAACTTGTGT................................................................................. 23 2 110.00 19.00 0.00 35.50 55.50 0.00 .................................................................CAAGACCGGCATTATGGGAGTC........................................... 22 2 97.00 19.00 0.00 14.50 63.50 0.00 ..........................AACCCGTAATTCCGAACTTGTG.................................................................................. 22 2 91.00 2.50 0.00 39.50 49.00 0.00 .................................................................CAGGACCGGCATTATGGGAGTC........................................... 22 2 46.50 1.00 0.00 8.00 37.50 0.00 .................................................................CAAGACCGGCATTATGGGAGT............................................ 21 2 31.50 13.50 0.00 5.50 12.50 0.00 ...........................ACCCGTAATTCCGAACTTGT................................................................................... 20 2 9.50 0.00 0.00 5.00 4.50 0.00 .........................AAACCCGTAATTCCGAACTTGT................................................................................... 22 2 9.00 1.00 0.00 4.50 3.50 0.00 .................................................................CAAGACCGGCATTATGGGAG............................................. 20 2 8.50 3.00 0.00 1.50 4.00 0.00 ..........................AACCCGTAATTCCGAACTTGTGA................................................................................. 23 2 6.50 0.50 0.00 2.00 4.00 0.00 ..........................AACCCGTAATTCCGCACTTGT................................................................................... 21 2 6.50 0.00 0.00 2.50 4.00 0.00 ...........................ACCCGTAATTCCGAACTTGTG.................................................................................. 21 2 6.50 0.00 0.00 4.00 2.50 0.00 ..........................AACCCGGAATTCCGAACTTGT................................................................................... 21 2 5.50 0.00 0.00 1.00 4.50 0.00 ..........................AACCCGTAATTCCGACCTTGT................................................................................... 21 2 4.00 0.00 0.00 1.00 3.00 0.00 ...........................ACCCGTAATTCCGAACTTGTGT................................................................................. 22 2 3.00 0.00 0.00 1.50 1.50 0.00 .........................AAACCCGTAATTCCGAACTTGTGT................................................................................. 24 2 2.50 1.00 0.00 1.00 0.50 0.00 .................................................................CAAGACCGGCATTATGGGAGTT........................................... 22 2 2.50 0.50 0.00 0.50 1.50 0.00 ..........................AACCCGTAATCCCGAACTTGT................................................................................... 21 2 2.50 0.00 0.00 1.00 1.50 0.00 .................................................................CAGGACCGGCATTGTGGGAGTC........................................... 22 2 2.50 0.50 0.00 0.50 1.50 0.00 ..........................AACCCGTAAATCCGAACTTGT................................................................................... 21 2 2.00 0.50 0.00 0.00 1.50 0.00 ..........................AACCCGCAATTCCGAACTTGT................................................................................... 21 2 2.00 0.00 0.00 0.00 2.00 0.00 .................................................................CAGGACCGGCATTATGGGAGT............................................ 21 2 2.00 0.00 0.00 0.50 1.50 0.00 ..........................GACCCGTAATTCCGAACTTGT................................................................................... 21 2 2.00 0.00 0.00 0.00 2.00 0.00 ..........................AACCCGTAATTCCGAACTTG.................................................................................... 20 2 2.00 0.00 0.00 0.00 2.00 0.00 ..........................AACCCGTAATTCCGAACTTTT................................................................................... 21 2 2.00 0.00 0.00 1.00 1.00 0.00 .................................................................CAAGACCGGCATTATGGGA.............................................. 19 2 2.00 0.50 0.00 0.50 1.00 0.00 ..........................AACCCGTAATGCCGAACTTGT................................................................................... 21 2 2.00 0.00 0.00 0.00 2.00 0.00 .................................................................CAAGACCGGCATTATGGGAGTCT.......................................... 23 2 1.50 0.50 0.00 0.00 1.00 0.00 ................................................................ACAAGACCGGCATTATGGGAG............................................. 21 2 1.50 1.00 0.00 0.00 0.50 0.00 ....................................................................GACCGGCATTATGGGAGTCTGT........................................ 22 2 1.50 0.50 0.00 0.00 1.00 0.00 ..........................AACCCGTATTTCCGCACTTGT................................................................................... 21 2 1.50 0.00 0.00 0.50 1.00 0.00 .................................................................CAAGACCGGCATTATGGGAGA............................................ 21 2 1.50 0.00 0.00 0.00 1.50 0.00 ..........................AACCAGTAATTCCGAACTTGTGT................................................................................. 23 2 1.50 0.00 0.00 0.00 1.50 0.00 ..........................AAACCGTAATTCCGAACTTGT................................................................................... 21 2 1.50 0.00 0.00 0.50 1.00 0.00 ............................................................TGTTACAAGACCGGCATTATGGG............................................... 23 2 1.50 0.00 0.00 1.00 0.50 0.00 ............................................................TGTTACAAGACCGGCATTATGG................................................ 22 2 1.50 0.50 0.00 0.50 0.50 0.00 ..........................AACCCGTAATTCCGAAATTGT................................................................................... 21 2 1.50 0.00 0.00 0.50 1.00 0.00 .................................................................CGAGACCGGCATTATGGGAGTC........................................... 22 2 1.50 0.00 0.00 0.00 1.50 0.00 ................................................................ACAAGACCGGCATTATGGGAGT............................................ 22 2 1.50 0.50 0.00 0.50 0.50 0.00 ..........................AACCCGTAATTCCGCACTTGTG.................................................................................. 22 2 1.50 0.00 0.00 0.50 1.00 0.00 ..........................AACCCGTAAGTCCGAACTTGT................................................................................... 21 2 1.50 0.00 0.00 0.50 1.00 0.00 ..........................AACCCGTAATTCCGAACTGGTGT................................................................................. 23 2 1.50 0.00 0.00 0.00 1.50 0.00
7	super_2335:1656-1671 +	6.25	ATACTTACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACTGGTTTTTGGCAACAAAATCAATGACA A------------------------------------------------------------------------------------------------------------------ATCAAGTGAGCGTTA Size Hit Count Total Norm V111 Male body V042 Embryo V050 Head V057 Head M021 Embryo	None	None
3	super_1:5115722-5115737 +	6.25	ATACTTACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACTGGTTTTTGGCAACAAAATCAATGACA A------------------------------------------------------------------------------------------------------------------ATCAAGTGAGCGTTA Size Hit Count Total Norm V111 Male body V042 Embryo V050 Head V057 Head M021 Embryo	None	None

droWil1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
2	scaffold_180708:11622810-11622939 +	92.45	ATACTTACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACTGGTTTTTGGC-AACAAAATC-AATGACA ATAGTCACATATGGACCATTAACAGAAACCCGTAAATCCGAACTTGTGCTGTTTTATATCTGTTACAAGACCGGCATTATGGGAGTCTGTCAATGCAAACAACTGGTTTTTGGCCAACAAAATCGAAT--CG Size Hit Count Total Norm V117 Male body V118 Embryo V119 Head M020 Head ..........................AACCCGTAAATCCGAACTTG...................................................................................... 20 1 1282.00 1.00 1.00 19.00 1261.00 ..........................AACCCGTAAATCCGAACTTGTG.................................................................................... 22 1 1028.00 25.00 31.00 842.00 130.00 ..........................AACCCGTAAATCCGAACTTGT..................................................................................... 21 1 724.00 145.00 17.00 510.00 52.00 .................................................................CAAGACCGGCATTATGGGAGTC............................................. 22 1 395.00 43.00 0.00 217.00 135.00 ..........................AACCCGTAAATCCGAACTTGTGT................................................................................... 23 1 262.00 134.00 5.00 123.00 0.00 ..........................AACCCGTAAATCCGAACTTGTGA................................................................................... 23 1 90.00 4.00 35.00 50.00 1.00 .................................................................CAAGACCGGCATTATGGGAGT.............................................. 21 1 83.00 20.00 0.00 60.00 3.00 .................................................................CAGGACCGGCATTATGGGAGTC............................................. 22 1 63.00 1.00 0.00 50.00 12.00 ...........................ACCCGTAAATCCGAACTTGTG.................................................................................... 21 1 46.00 0.00 1.00 40.00 5.00 ...........................ACCCGTAAATCCGAACTTGTGC................................................................................... 22 1 37.00 0.00 0.00 37.00 0.00 .........................AAACCCGTAAATCCGAACTTGT..................................................................................... 22 1 25.00 8.00 0.00 17.00 0.00 ................................................................ACAAGACCGGCATTATGGGAGT.............................................. 22 1 18.00 5.00 0.00 12.00 1.00 ..........................AACCCGTAAATCCGAACTGG...................................................................................... 20 1 18.00 0.00 0.00 0.00 18.00 .........................AAACCCGTAAATCCGAACTTG...................................................................................... 21 1 17.00 0.00 0.00 3.00 14.00 .................................................................CAAGACCGGCATTATGGGAG............................................... 20 1 15.00 9.00 0.00 6.00 0.00 .........................AAACCCGTAAATCCGAACTTGTG.................................................................................... 23 1 13.00 0.00 0.00 8.00 5.00 ...........................ACCCGTAAATCCGAACTTG...................................................................................... 19 1 11.00 0.00 0.00 1.00 10.00 .................................................................CAAGACCGGCATTATGGGAGTCT............................................ 23 1 10.00 4.00 0.00 3.00 3.00 ...........................ACCCGTAAATCCGAACTTGT..................................................................................... 20 1 10.00 1.00 0.00 9.00 0.00 ..........................AACCCTTAAATCCGAACTTGT..................................................................................... 21 1 8.00 0.00 0.00 0.00 8.00 ...........................ACCCGTAAATCCGAACTTGTGT................................................................................... 22 1 7.00 2.00 0.00 5.00 0.00 ..........................AACCCCTAAATCCGAACTTGT..................................................................................... 21 1 7.00 0.00 0.00 0.00 7.00 ................................................................ACAAGACCGGCATTATGGGAG............................................... 21 1 6.00 1.00 0.00 5.00 0.00 ..........................AACCCGTAAATCCGAACTTGTGAA.................................................................................. 24 1 6.00 0.00 5.00 1.00 0.00 .............................CCGTAAATCCGAACTTGT..................................................................................... 18 1 6.00 0.00 0.00 0.00 6.00 ..........................AACCCTTAAATCCGAACTTGTG.................................................................................... 22 1 5.00 0.00 0.00 4.00 1.00 ..........................AACCCTTAAATCCGAACTTG...................................................................................... 20 1 5.00 0.00 0.00 0.00 5.00 ..........................AACCCGTAAATCAGAACTTG...................................................................................... 20 1 5.00 0.00 0.00 0.00 5.00 ..............................CGTAAATCCGAACTTGTG.................................................................................... 18 1 5.00 0.00 0.00 1.00 4.00 ..........................GACCCGTAAATCCGAACTTG...................................................................................... 20 1 5.00 0.00 0.00 0.00 5.00 .................................................................CAAGACCGGCATTATGTGAGTC............................................. 22 1 4.00 0.00 0.00 2.00 2.00 ...........................AACCCTAAATCCGAACTTGT..................................................................................... 20 1 4.00 0.00 0.00 0.00 4.00 ..........................CACCCGTAAATCCGAACTTGTG.................................................................................... 22 1 4.00 0.00 0.00 4.00 0.00 .................................................................CAAGACCGGCATTATGGG................................................. 18 1 4.00 0.00 0.00 4.00 0.00 ..........................AACCCGTAAATCCGAACT........................................................................................ 18 1 4.00 0.00 0.00 0.00 4.00 ..........................AACCCGTAAATCTGAACTTGT..................................................................................... 21 1 4.00 0.00 0.00 0.00 4.00 ...........................ACCCGTAAATCCGAACTTGTGA................................................................................... 22 1 4.00 0.00 0.00 4.00 0.00 .................................................................CAAGACCGGCATTATGGGA................................................ 19 1 4.00 2.00 0.00 2.00 0.00 .........................CAACCCGTAAATCCGAACTTGTG.................................................................................... 23 1 3.00 0.00 0.00 3.00 0.00 ..........................AACCCGTAAATCCGCACTTGT..................................................................................... 21 1 3.00 3.00 0.00 0.00 0.00 ..........................AACCTGTAAATCCGAACTTGT..................................................................................... 21 1 3.00 0.00 0.00 0.00 3.00 ..........................GACCCGTAAATCCGAACTTGTG.................................................................................... 22 1 3.00 0.00 0.00 3.00 0.00 ..........................AACCCATAAATCCGAACTTGT..................................................................................... 21 1 3.00 0.00 1.00 2.00 0.00 ..........................AACCCGTAAATCCGAACTTGG..................................................................................... 21 1 3.00 0.00 0.00 0.00 3.00 ..........................AACCCGTAAATCCGAACTTTTG.................................................................................... 22 1 3.00 0.00 0.00 3.00 0.00 ...................................................................AGACCGGCATTATGGGAGTC............................................. 20 1 3.00 1.00 0.00 0.00 2.00 .............................................GTGCTGTTTTATATCTGTTACA................................................................. 22 1 3.00 0.00 0.00 0.00 3.00 ..........................AACCCGTAAATCAGAACTTGT..................................................................................... 21 1 3.00 0.00 0.00 3.00 0.00 ..........................AACCTGTAAATCCGAACTTGTG.................................................................................... 22 1 3.00 0.00 0.00 3.00 0.00 ............................CCCGTAAATCCGAACTTGTG.................................................................................... 20 1 3.00 0.00 0.00 1.00 2.00 ..........................AAACCGTAAATCCGAACTTGT..................................................................................... 21 1 3.00 0.00 1.00 2.00 0.00 ..........................AACCCGTAAATCCTAACTTGTG.................................................................................... 22 1 3.00 0.00 0.00 3.00 0.00 ..........................AACCCGTAAATCAGAACTTGTGT................................................................................... 23 1 3.00 0.00 0.00 3.00 0.00 ..........................AACCCGTAAATCCGAACTTGTGG................................................................................... 23 1 3.00 2.00 0.00 1.00 0.00 ..................................................................AAGACCGGCATTATGGGAGTC............................................. 21 1 3.00 1.00 0.00 2.00 0.00

droVir3 - 2 hits found