dme-mir-1007- 12- and 20-way alignments

dme-mir-1007	chrX:21167412-21167476 -	Known_mirbase
[View on miRBase]	[View on UCSC Genome Browser {Cornell Mirror}]	mirtron

Legend:

   mature strand at position 21167413-21167434
   star strand at position 21167454-21167476
   mutations
   read mismatches
   coordinate mismatch (possible incorrect ortholog)

12-way Fast Statistical Aligner re-alignment (From MAFs)

Species	Coordinate	Alignment
dm3	chrX:21167397-21167491 -	ACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATCT-T-GGTTCTTGGA--------------C------TCTTGATAAGCTCAATTAACTGTTT----GCAGCGGACGGGATCTTCT
droSim1	chrX:12920203-12920297 +	ACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATCT-T-GGTTCTTGGA--------------C------TCTTGATAAGCTCAATTAACTGTTT----GCAGCGGACGGCATCTTCT
droSec1	super_8:3474404-3474498 -	ACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATCT-T-GGTTCTTGGA--------------C------TCTTGATAAGCTCAATTAACTGTTT----GCAGCGGACGGCATCTTCT
droYak2	chrX:20343121-20343215 -	ACGAATCTGTTCAGTGTAAGCAGTGTTTGAACTCGATCT-A-GGATCTTGGA--------------C------TCTTGATAAGCTCAATTAACTGTTT----GCAGCGGACGGCATCTTCT
droEre2	scaffold_4690:17696754-17696848 -	ACGAATCTGTTCAGTGTAAGCAGTGTTTGAACTCGATCT-G-GGATCTTGGA--------------C------TCTTGATAAGCTCAATTAACTGTTT----GCAGCGGACGGCATCTTCT
droAna3	scaffold_13334:1054378-1054469 +	ACGAATCCGTACAGTGTAAGCAGTGTTTGAACTCGATCT-T--------GGAATA---------G-C------TCCCGATAAGCTCAATTAACTGTTT----GCAGCCGATGGCATCTTCT
dp4	chrXL_group1a:9060607-9060705 +	ACGAATCGATACAGTGTAAGCAGCGATTGA--TCAATCttTTGt--------tTgGttTgGttTgG--------ttTGATAAACTCCATTAACTGTTT----GCAGCCGATGGCATCTTCT
droPer1	super_15:1454063-1454161 +	ACGAATCGATACAGTGTAAGCAGCGATTGA--TCAATCttTTGt--------tTgGttTgGttTgG--------ttTGATAAACTCCATTAACTGTTT----GCAGCCGATGGCATCTTCT
droWil1	scaffold_180702:162895-162984 -	ATGAATCCATGCAATGTGAGTT--TT--------------TTGA--------TTTTCTTGTTTAA-T------TTCGAAAAACTTTAATCGACTGTATTCTATCAGCTGATGGCATCTTCT
droVir3	scaffold_12970:7925725-7925826 -	ACGAATCAATGAAATGTAAGCAGTGCTTGAGCTTATTCT-CTGG------------CTTCATTTGAC--CATTTTCTGATAAGCTCAATTAACTGTTT----GCAGCGGATGCCGCCCTCT
droMoj3	scaffold_6482:1600635-1600734 +	ATGAGTCCATGAAATGTAAGCAGTGTTTGAACTAAATCT-CTGG--------CTACTTGGCCGTA--------TATTGATAAGCTCAACTAACTGTTT----GCAGCGGACACCTATTTGG
droGri2	scaffold_15203:11134564-11134665 +	GCGAATCAATACAATGTAAGCAGTGTTTGAACTGAATAT-CTGGTTATCCGA--------------CTTCATATACTGATAAGCTCAATTCACTGTTT----GCAGCGGATGGCGTCTTCT

20-way Fast Statistical Aligner re-alignment (Top LASTZ hits)

Species	Coordinate	Lastz Id	Alignment
dm3	chrX:21167397-21167491 -	NA	ACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATC--TTG--GTTC--T--TGGAC------TCTTGATAAGCTCAATTAACTGTTT----GCAGCGGACGGGATCTTCT
droSim1	chrX:12920203-12920297 +	5	ACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATC--TTG--GTTC--T--TGGAC------TCTTGATAAGCTCAATTAACTGTTT----GCAGCGGACGGCATCTTCT
droSec1	super_8:3474404-3474498 -	10	ACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATC--TTG--GTTC--T--TGGAC------TCTTGATAAGCTCAATTAACTGTTT----GCAGCGGACGGCATCTTCT
droYak2	chrX:20343121-20343215 -	17	ACGAATCTGTTCAGTGTAAGCAGTGTTTGAACTCGATC--TAG--GATC--T--TGGAC------TCTTGATAAGCTCAATTAACTGTTT----GCAGCGGACGGCATCTTCT
droEre2	scaffold_4690:17696754-17696848 -	12	ACGAATCTGTTCAGTGTAAGCAGTGTTTGAACTCGATC--TGG--GATC--T--TGGAC------TCTTGATAAGCTCAATTAACTGTTT----GCAGCGGACGGCATCTTCT
droEug1	scf7180000408193:314924-315018 +	3	ACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATC--TTG--GATC--T--TGGAC------TCCTGATAAGCTCAATTAACTGTTT----GCAGCCGACGGCATATTTT
droBia1	scf7180000302187:364133-364220 +	3	ACGAATCTGTGCAGTGTAAGCAGTGTTTGAACTCGATC--TT-------------GGAC------TCCTGATAAGCTCAATTAACTGTTT----GCAGCCGACGGCATCTTCT
droTak1	scf7180000415158:280534-280628 +	4	ACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATC--CCG--GATC--C--TGAAC------TCCCGATAAGCTCAATTAACTGTTT----GCAGCCGATGGCATCTTCT
droEle1	scf7180000490214:749279-749373 +	1	ACGAGTCCGTACAGTGTAAGCAGTGTTTGAACTCGATC--TTG--GATC--T--TGGAC------TCCCGATAAGCTCAATTAACTGTTT----GCAGCCGAAGGCATCTTCT
droRho1	scf7180000780082:45658-45752 +	9	GCGAATCCGTACAGTGTAAGCAGTGTTTGAACTCGATC--TTG--GATC--T--TAGAT------TCCCGATAAGCTCAATTAACTGTTT----GCAGCCGACGGCATCTTCT
droFic1	scf7180000454077:618950-619043 -	16	ACGAATCCGTACAGTGTAAGCAGTGCTTGAACTCGATC--TTG--GATC--T--TGGAC-------CCCGATAAGCTCAATTAACTGTTT----GCAGCCGATGGCATCTTCT
droKik1	scf7180000302395:538362-538458 -	14	ACGAATCAGTGCAGTGTAAGCAGTGCTTGAACTCGATC--TCG--TATTAAT--TGGTC------TTCTGATAAGCTCAATTAACTGTTT----GCAGCCGATGGCATCTTCT
droAna3	scaffold_13334:1054378-1054469 +	2	ACGAATCCGTACAGTGTAAGCAGTGTTTGAACTCGATC--TTG--GAATA-------GC------TCCCGATAAGCTCAATTAACTGTTT----GCAGCCGATGGCATCTTCT
droBip1	scf7180000396733:702536-702627 +	5	ACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATC--TTG--GAATA-------GC------TCCCGATAAGCTCAATTAACTGTTT----GCAGCCGATGGCATCTTCT
dp4	chrXL_group1a:9060607-9060705 +	2	ACGAATCGATACAGTGTAAGCAGCGATTGA--TCAATCAATTG--AATC--GAATCGAA----TCGAATGATAAACTCCATTAACTGTTT----GCAGCCGATGGCATCTTCT
droPer1	super_15:1454063-1454161 +	2	ACGAATCGATACAGTGTAAGCAGCGATTGA--TCAATCAATTG--AATC--GAATCGAA----TCGAATGATAAACTCCATTAACTGTTT----GCAGCCGATGGCATCTTCT
droWil1	scaffold_180702:162895-162984 -	9	ATGAATCCATGCAATGTGAGT--TTTTTGATTTT---C--TTG--------T--TTAAT------TTCGAAAAACTTTAATCGACTGTATTCTATCAGCTGATGGCATCTTCT
droVir3	scaffold_12970:7925725-7925826 -	11	ACGAATCAATGAAATGTAAGCAGTGCTTGAGCTTATTC--TCTGGCTTCA-T--TTGAC--CATTTTCTGATAAGCTCAATTAACTGTTT----GCAGCGGATGCCGCCCTCT
droMoj3	scaffold_6482:1600635-1600734 +	2	ATGAGTCCATGAAATGTAAGCAGTGTTTGAACTAAATC--TCTG-GCT-ACT--TGGCC---GTATATTGATAAGCTCAACTAACTGTTT----GCAGCGGACACCTATTTGG
droGri2	scaffold_15203:11134564-11134665 +	2	GCGAATCAATACAATGTAAGCAGTGTTTGAACTGAATA--TCTG-GTTA--T--CCGACTTCATATACTGATAAGCTCAATTCACTGTTT----GCAGCGGATGGCGTCTTCT

[View All Possible Orthologs]

Original 12-way multiz alignment with reads super-imposed

Species

Alignment

dm3

ACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATCT-T-GGTTCTTGGA--------------C------TCTTGATAAGCTCAATTAACTGTTT----GCAGCGGACGGGATCTTCT

Size

Hit Count

Total Norm

droSim1

ACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATCT-T-GGTTCTTGGA--------------C------TCTTGATAAGCTCAATTAACTGTTT----GCAGCGGACGGCATCTTCT	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
...............GTAAGCAGTGTTTGAACTCGATCT-T-GG.............................................................................	27	1	298.00	1.00	3.00	279.00	15.00
...............................................................................TAAGCTCAATTAACTGTTT----GC.................	21	1	149.00	0.00	137.00	11.00	1.00
...............GTAAGCAGTGTTTGAACTC.......................................................................................	19	1	96.00	1.00	7.00	77.00	11.00
.................AAGCAGTGTTTGAACTCGATCT-T-GG.............................................................................	25	1	66.00	0.00	1.00	60.00	5.00
............................................TTCTTGGA--------------C------TCTTGATAAGCTCA..................................	23	1	64.00	0.00	0.00	63.00	1.00
............................................TTCTTGGA--------------C------TCTTGATAAGCTC...................................	22	1	49.00	0.00	1.00	37.00	11.00
............................................TTCTTGGA--------------C------TCTTGATAAGCT....................................	21	1	35.00	0.00	0.00	30.00	5.00
..............................................CTTGGA--------------C------TCTTGATAAGCTCA..................................	21	1	33.00	0.00	0.00	28.00	5.00
...............GTAAGCAGTGTTTGAACTCGATC...................................................................................	23	1	32.00	0.00	6.00	7.00	19.00
...............................................................................TAAGCTCAATTAACTGTTT----GCAG...............	23	1	25.00	10.00	12.00	1.00	2.00
...............GTAAGCAGTGTTTGAACT........................................................................................	18	1	25.00	5.00	0.00	18.00	2.00
.......................TGTTTGAACTCGATCT-T-GG.............................................................................	19	1	20.00	0.00	0.00	18.00	2.00
..............................................CTTGGA--------------C------TCTTGATAAGCT....................................	19	1	19.00	0.00	0.00	19.00	0.00
...................GCAGTGTTTGAACTCGATCT-T-GG.............................................................................	23	1	18.00	0.00	0.00	14.00	4.00
..............................................CTTGGA--------------C------TCTTGATAAGCTC...................................	20	1	18.00	0.00	0.00	16.00	2.00
.............................................TCTTGGA--------------C------TCTTGATAAGCTCA..................................	22	1	17.00	1.00	0.00	12.00	4.00
...............GTAAGCAGTGTTTGAACTCGATCT-.................................................................................	24	1	15.00	0.00	3.00	6.00	6.00
......................GTGTTTGAACTCGATCT-T-GG.............................................................................	20	1	13.00	1.00	0.00	10.00	2.00
..............................................CTTGGA--------------C------TCTTGATAAGCTCAATTAAC............................	27	1	13.00	0.00	0.00	10.00	3.00
..............................................CTTGGA--------------C------TCTTGATAAGCTCAATTAACT...........................	28	1	13.00	0.00	0.00	12.00	1.00
............................................TTCTTGGA--------------C------TCTTGATAAGC.....................................	20	1	10.00	0.00	0.00	4.00	6.00
.............................................TCTTGGA--------------C------TCTTGATAAGCTC...................................	21	1	10.00	0.00	1.00	4.00	5.00
.....................................CT-T-GGTTCTTGGA--------------C------TCTTGATAAGCT....................................	26	1	10.00	0.00	0.00	9.00	1.00
.....................AGTGTTTGAACTCGATCT-T-GG.............................................................................	21	1	9.00	0.00	0.00	8.00	1.00
...............................................................................TAAGCTCAATTAACTGTTT----GCA................	22	1	9.00	2.00	6.00	0.00	1.00
..............................................CTTGGA--------------C------TCTTGATAAGC.....................................	18	1	8.00	0.00	0.00	4.00	4.00
...............................................................................TAAGCTCAATTAACTGTTT----G..................	20	1	8.00	0.00	8.00	0.00	0.00
...............GTAAGCAGTGTTTGAACTCGATCT-T-GGT............................................................................	28	1	8.00	0.00	0.00	7.00	1.00
..............................ACTCGATCT-T-GGTTCTTGGA--------------C------T...............................................	22	1	7.00	0.00	1.00	4.00	2.00
...............................................TTGGA--------------C------TCTTGATAAGCTC...................................	19	1	7.00	0.00	0.00	1.00	6.00
..............................................CTTGGA--------------C------TCTTGATAAGCTCAA.................................	22	1	7.00	0.00	0.00	3.00	4.00
...........................................GTTCTTGGA--------------C------TCTTGATAAGCTC...................................	23	1	6.00	0.00	0.00	5.00	1.00
......................GTGTTTGAACTCGATCT-T-GGT............................................................................	21	1	6.00	0.00	0.00	3.00	3.00
.............................................TCTTGGA--------------C------TCTTGATAAGCT....................................	20	1	6.00	0.00	0.00	5.00	1.00
...............GTAAGCAGTGTTTGAACTCGATCT-T-G..............................................................................	26	1	5.00	0.00	0.00	3.00	2.00
............................................TTCTTGGA--------------C------TCTTGATAAGCTCAA.................................	24	1	5.00	0.00	0.00	5.00	0.00
............................................TTCTTGGA--------------C------TCTTGATAAGCTCAATTAAC............................	29	1	5.00	0.00	0.00	5.00	0.00
...........................................GTTCTTGGA--------------C------TCTTGATAAGCT....................................	22	1	5.00	0.00	0.00	2.00	3.00
...............................................................................TAAGCTCAATTAACTGTT........................	18	1	5.00	0.00	5.00	0.00	0.00
.............................................TCTTGGA--------------C------TCTTGATAAGCTCAATTAAC............................	28	1	5.00	0.00	0.00	3.00	2.00
............................................TTCTTGGA--------------C------TCTTGATAAGCC....................................	21	1	4.00	0.00	0.00	3.00	1.00
..................................GATCT-T-GGTTCTTGGA--------------C------TCTTG...........................................	22	1	4.00	0.00	0.00	4.00	0.00
...............................................TTGGA--------------C------TCTTGATAAGCT....................................	18	1	4.00	0.00	0.00	3.00	1.00
...............TTAAGCAGTGTTTGAACTCGATCT-T-GG.............................................................................	27	1	4.00	0.00	0.00	4.00	0.00
.............................................TCTTGGA--------------C------TCTTGATAAGCTCAATTAACT...........................	29	1	4.00	0.00	0.00	3.00	1.00
....................CAGTGTTTGAACTCGATCT-T-GG.............................................................................	22	1	3.00	0.00	0.00	3.00	0.00
..................AGCAGTGTTTGAACTCGATCT-T-GG.............................................................................	24	1	3.00	0.00	0.00	3.00	0.00
...............................CTCGATCT-T-GGTTCTTGGA--------------C------TCTTGAT.........................................	27	1	3.00	0.00	0.00	2.00	1.00
.............................................TCTTGGA--------------C------TCTTGATAAGC.....................................	19	1	3.00	0.00	0.00	1.00	2.00
......................................T-T-GGTTCTTGGA--------------C------TCTTGA..........................................	19	1	3.00	0.00	1.00	0.00	2.00

droSec1

ACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATCT-T-GGTTCTTGGA--------------C------TCTTGATAAGCTCAATTAACTGTTT----GCAGCGGACGGCATCTTCT	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
...............................................................................TAAGCTCAATTAACTGTTT----GCA................	22	1	75.00	5.00	8.00	62.00
...............................................................................TAAGCTCAATTAACTGTTT----G..................	20	1	71.00	6.00	1.00	64.00
...............................................................................TAAGCTCAATTAACTGTTT----GC.................	21	1	43.00	1.00	0.00	42.00
...............................................................................TAAGCTCAATTAACTGTTT----GCAG...............	23	1	41.00	4.00	16.00	21.00
...............................................................................TAAGCTCAATTAACTGTTT----GCAGT..............	24	1	26.00	1.00	21.00	4.00
...............GTAAGCAGTGTTTGAACT........................................................................................	18	1	23.00	0.00	18.00	5.00
...............................................................................TAAGCTCAATTAACTGTTT----GCAGA..............	24	1	22.00	3.00	11.00	8.00
...............GTAAGCAGTGTTTGAACTCGATCT-T-GG.............................................................................	27	1	11.00	5.00	6.00	0.00
...............GTAAGCAGTGTTTGAACTC.......................................................................................	19	1	9.00	2.00	6.00	1.00
...............GTAAGCAGTGTTTGAACTCGATC...................................................................................	23	1	6.00	0.00	6.00	0.00
..............................................CTTGGA--------------C------TCTTGATAAGCTCA..................................	21	1	6.00	2.00	4.00	0.00
...............................................................................TAAGCTCAATTAACTGTTT----GCAGTT.............	25	1	6.00	1.00	0.00	5.00
............................................TTCTTGGA--------------C------TCTTGATAAGCTCA..................................	23	1	5.00	2.00	2.00	1.00
...............GTAAGCAGTGTTTGAACTCGATCT-.................................................................................	24	1	3.00	1.00	0.00	2.00
...............GTAAGCAGTGTTTGAACTCG......................................................................................	20	1	3.00	2.00	1.00	0.00
...............GTAAGCAGTGTTTGAACTCGATCT-T-GGT............................................................................	28	1	3.00	3.00	0.00	0.00
...............GTAAGCAGTGTTTGAACTCGATCT-T-G..............................................................................	26	1	2.00	1.00	1.00	0.00
...............................................................................TAAGCTCAATTAACTGTTT----...................	19	1	2.00	0.00	1.00	1.00
...................GCAGTGTTTGAACTCGATCT-T-GG.............................................................................	23	1	2.00	0.00	2.00	0.00
...............................................................................TAAGCCCAATTAACTGTTT----G..................	20	1	2.00	0.00	0.00	2.00
............................................TTCTTGGA--------------C------TCTTGATAAGCTC...................................	22	1	2.00	1.00	1.00	0.00
...............................................................................TAAGCTCAATTAACTGTTT----GCAGTA.............	25	1	2.00	0.00	0.00	2.00
...............................................................................TAAGCTCAATTAACTGTTT----GCAC...............	23	1	2.00	0.00	2.00	0.00
...............................................................................TATGCTCAATTAACTGTTT----GCAGT..............	24	1	2.00	0.00	0.00	2.00
.......................TGTTTGAACTCGATCT-T-GG.............................................................................	19	1	1.00	0.00	1.00	0.00
...................GCAATGTTTGAACTCGATCT-T-GG.............................................................................	23	1	1.00	0.00	1.00	0.00
...............................................................................TAAGCTCAATTAACTGTTT----GCACA..............	24	1	1.00	0.00	0.00	1.00
..............................................................................CTAAGCTCAATTAACTGTTT----GCA................	23	1	1.00	0.00	0.00	1.00
...............................................................................TAAGCTCAATTAACTGTTC----G..................	20	1	1.00	0.00	0.00	1.00
...............................................................................TAAGCTCAATTAACTGTTT----GCAA...............	23	1	1.00	0.00	0.00	1.00
...............................................................................TAAGCTCAATTAACTGTTT----GCAGAA.............	25	1	1.00	1.00	0.00	0.00
...............GTATGCAGTGTTTGAACT........................................................................................	18	1	1.00	0.00	1.00	0.00
............................................TTCTTGGA--------------C------TCTTGATAAGCTCAA.................................	24	1	1.00	1.00	0.00	0.00
..............................................................................CTAAGCTCAATTAACTGTTT----GC.................	22	1	1.00	0.00	0.00	1.00
................TAAGCAGTGTTTGAACTCGATCT-.................................................................................	23	1	1.00	0.00	1.00	0.00
..............................................................................ATAAGCTCAATTAACTGTTT----GCAGT..............	25	1	1.00	1.00	0.00	0.00
...............................................................................TAAGCTCAATTAACTGCTT----GCA................	22	1	1.00	0.00	0.00	1.00
...............GTAAGCAGTGTTTGAACTCGAT....................................................................................	22	1	1.00	0.00	1.00	0.00
.............................................TCTTGGA--------------C------TCTTGATAAGCT....................................	20	1	1.00	1.00	0.00	0.00
...............................................TTGGA--------------C------TCTTGATAAGCTCA..................................	20	1	1.00	0.00	1.00	0.00
...............................................................................TAAGCTCAATTACCTGCTT----G..................	20	1	1.00	0.00	0.00	1.00
...............................................................................TAAGCTCAATTAACTGTCT----GCA................	22	1	1.00	1.00	0.00	0.00
..............................................................................ATAAGCTCAATTAACTGT.........................	18	1	1.00	0.00	1.00	0.00
..............................................CTTGGA--------------C------TCTTGATAAGCTC...................................	20	1	1.00	1.00	0.00	0.00
...............................................................................GAAGCTCAATTAACTGTTT----GCAGT..............	24	1	1.00	0.00	0.00	1.00
...............................................................................TAAGCTCACTTAACTGTTT----GC.................	21	1	1.00	0.00	0.00	1.00
............................................TTCTTGGA--------------C------TCTTGATAAGC.....................................	20	1	1.00	0.00	1.00	0.00
...............................................................................TAAGCTTAATTAACTGTTT----GCA................	22	1	1.00	0.00	0.00	1.00
.................AAGCAGTGTTTGAACTCGATCT-T-GGT............................................................................	26	1	1.00	1.00	0.00	0.00
...............................................................................TACGCTCAATTAACTGTTT----GCAGT..............	24	1	1.00	1.00	0.00	0.00
.................AAGCAGTGTTTGAACTCGATCT-T-GG.............................................................................	25	1	1.00	0.00	1.00	0.00
...............................................................................TAAGCTTAATTAACTGTTT----G..................	20	1	1.00	0.00	0.00	1.00
...............GCAAGCAGTGTTTGAACTTGATCT-T-G..............................................................................	26	1	1.00	1.00	0.00	0.00
...........................................................................TTGATAAGCTCAATTAACT...........................	19	1	1.00	0.00	1.00	0.00
.................................................................................AGCTCAATTAACTGTTT----G..................	18	1	1.00	0.00	0.00	1.00
...............................................................................TAAGCTCAATTAACTCTTT----G..................	20	1	1.00	0.00	0.00	1.00
...............................................................................TAAGCTCAATTAGCTGTTT----GCA................	22	1	1.00	0.00	0.00	1.00
...............GTAAGCAGTTTTTGAACT........................................................................................	18	1	1.00	0.00	1.00	0.00
...............................................................................TAAGCTCAATTAACTGCTT----GCAGA..............	24	1	1.00	1.00	0.00	0.00
.................................................................................AGCTCAATTAACTGTTT----GCAGT..............	22	1	1.00	0.00	0.00	1.00
...............................................................................TAAGCTAAATTAACTGTTT----GCA................	22	1	1.00	0.00	0.00	1.00
...................................................A--------------C------TCTTGATAAGCTCAATTAACTGTT........................	26	1	1.00	0.00	1.00	0.00

droYak2

ACGAATCTGTTCAGTGTAAGCAGTGTTTGAACTCGATCT-A-GGATCTTGGA--------------C------TCTTGATAAGCTCAATTAACTGTTT----GCAGCGGACGGCATCTTCT	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
...............................................................................TAAGCTCAATTAACTGTTT----GC.................	21	1	60.00	0.00	7.00	1.00	8.00	44.00
...............................................................................TAAGCTCAATTAACTGTTT----GCA................	22	1	44.00	5.00	11.00	2.00	18.00	8.00
...............................................................................TAAGCTCAATTAACTGTTT----GCAG...............	23	1	22.00	9.00	1.00	2.00	5.00	5.00
......................................T-A-GGATCTTGGA--------------C------TCTTGA..........................................	19	1	22.00	0.00	2.00	0.00	1.00	19.00
...............................................................................TAAGCTCAATTAACTGTTT----GCAGT..............	24	1	18.00	2.00	3.00	3.00	10.00	0.00
...............GTAAGCAGTGTTTGAACTCGATC...................................................................................	23	1	16.00	1.00	0.00	1.00	0.00	14.00
...............................................................................TAAGCTCAATTAACTGTTT----G..................	20	1	16.00	0.00	6.00	0.00	9.00	1.00
...............GTAAGCAGTGTTTGAACTCGATCT-A-G..............................................................................	26	1	5.00	0.00	0.00	5.00	0.00	0.00
...............GTAAGCAGTGTTTGAACTCGATCT-.................................................................................	24	1	4.00	0.00	0.00	1.00	0.00	3.00
...............................................................................TAAGCTCAATTAACTGTTT----GCAGA..............	24	1	4.00	0.00	1.00	0.00	3.00	0.00
...............................................................................TAAGCTCAATTAACTGTT........................	18	1	4.00	0.00	0.00	0.00	0.00	4.00
.............................................TCTTGGA--------------C------TCTTGATAAGCTCA..................................	22	1	4.00	0.00	0.00	4.00	0.00	0.00
.............................................TCTTGGA--------------C------TCTTGATAAGCTC...................................	21	1	3.00	0.00	0.00	2.00	0.00	1.00
...............................................................................TAAGCTCAATTAACTGTTT----GCAGTT.............	25	1	3.00	1.00	1.00	0.00	0.00	1.00
...............................................................................TAAGCTCAATTAACTGTTT----...................	19	1	2.00	0.00	0.00	0.00	0.00	2.00
...........................................GATCTTGGA--------------C------TCTTGATAAGCT....................................	22	1	2.00	0.00	0.00	1.00	0.00	1.00
......................................T-A-GGATCTTGGA--------------C------TCTTGG..........................................	19	1	2.00	0.00	0.00	0.00	0.00	2.00
.............................................TCTTGGA--------------C------TCTTGATAAGCT....................................	20	1	2.00	0.00	0.00	1.00	0.00	1.00
...............GTAAGCAGTGTTTGAACTC.......................................................................................	19	1	2.00	1.00	0.00	1.00	0.00	0.00
...............GTAAGCAGTGTTTGAACTCGATCT-A-GG.............................................................................	27	1	2.00	0.00	0.00	1.00	0.00	1.00
...............GTAAGCAGTGTTTGAACTCGATCT-A-...............................................................................	25	1	2.00	0.00	0.00	2.00	0.00	0.00
..............................................CTTGGA--------------C------TCTTGATAAGCTCA..................................	21	1	2.00	0.00	0.00	2.00	0.00	0.00
...............GTAAGCAGTGTTTGAACTCGATCT-A-GGA............................................................................	28	1	2.00	0.00	0.00	2.00	0.00	0.00
...............GTAAGCAGTGTTTGAACT........................................................................................	18	1	2.00	1.00	0.00	1.00	0.00	0.00
......................................T-A-GGATCTTGGA--------------C------TCTTGC..........................................	19	1	1.00	0.00	0.00	0.00	0.00	1.00
...............................................................................TAAGCTCAATTAACTGTTT----GCATT..............	24	1	1.00	0.00	0.00	0.00	1.00	0.00
...............................................................................TAAGCTCAATTCCCTGTTT----G..................	20	1	1.00	0.00	0.00	0.00	1.00	0.00
.....................................CT-A-GGATCTTGGA--------------C------TCTTGATAAGCTCA..................................	28	1	1.00	0.00	0.00	1.00	0.00	0.00
...............................................................................TAAGCTCAATTAACTGTTT----TCAG...............	23	1	1.00	0.00	1.00	0.00	0.00	0.00
............................GAACTCGATCT-A-GGATCTTGGA--------------C------TCTTGG..........................................	29	1	1.00	0.00	0.00	0.00	0.00	1.00
...............................................................................TAAGATCAATTAACTGTTT----GCAGT..............	24	1	1.00	1.00	0.00	0.00	0.00	0.00
...........................................GATCTTGGA--------------C------TCTTGATAAGCTCA..................................	24	1	1.00	0.00	0.00	1.00	0.00	0.00
......................................T-A-GGATCTTGGA--------------C------TCTTGATAAGCT....................................	25	1	1.00	0.00	0.00	0.00	1.00	0.00
...........................................GATCTTGGA--------------C------TCTGGATAAGCTC...................................	23	1	1.00	0.00	0.00	0.00	0.00	1.00
....................................TCT-A-GGATCTTGGA--------------C------TCT.............................................	18	1	1.00	0.00	0.00	0.00	0.00	1.00
...............GTAAGCAGTGTTTGAACTCGA.....................................................................................	21	1	1.00	0.00	0.00	1.00	0.00	0.00
..............................................................................ATAAGCTCAATTAACTGTTT----GC.................	22	1	1.00	0.00	0.00	0.00	0.00	1.00
...............................................................................TAAGCTCAATTAACTGTTC----CC.................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
...............................................................................TAAGCTCAATTAACTGTTT----GCAT...............	23	1	1.00	0.00	0.00	0.00	1.00	0.00
....................................................................................TCAATTAACTGTTT----GCAGT..............	19	1	1.00	1.00	0.00	0.00	0.00	0.00
...............................................................................TAAGCTCGATTAACTGTTT----GC.................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
...............................................................................TAAGCTCAATTGACTGTTT----GC.................	21	1	1.00	0.00	0.00	0.00	0.00	1.00
.....................................CT-A-GGATCTTGGA--------------C------TCTTGATAAGCT....................................	26	1	1.00	0.00	0.00	0.00	0.00	1.00
...................................................................................CTCCATTAACTGTTT----GCAGT..............	20	1	1.00	0.00	0.00	1.00	0.00	0.00
..............................................CTTGGA--------------C------TCTTGATAAGCT....................................	19	1	1.00	0.00	0.00	0.00	0.00	1.00
.................................................................................................T----GCxGGGGACGGCATCTT..	17	1	1.00	0.00	0.00	0.00	1.00	0.00
...................................................................................CTCAATTAACTGTTT----GCAGT..............	20	1	1.00	0.00	0.00	1.00	0.00	0.00
...............GTAAGCAGTGTTTGAACTCG......................................................................................	20	1	1.00	0.00	0.00	1.00	0.00	0.00
......................................T-A-GGATGTTGGA--------------C------TCTTGA..........................................	19	1	1.00	0.00	0.00	0.00	1.00	0.00
...............................................................................TACGCTCAATTAACTGTTT----G..................	20	1	1.00	0.00	0.00	0.00	1.00	0.00
...............................................................................TAAGCTCAATTAACTGTTT----GCC................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
..............................................................................ATAAGCTCAATTAACTGTTT----T..................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
............................................ATCTTGGA--------------C------TCTTGATAAGCTC...................................	22	1	1.00	0.00	0.00	0.00	0.00	1.00
...............................................................................TAAGCTCAAGTAACTGTTT----TCA................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
............................................ATCTTGGA--------------C------TCTTGATAAGCTCA..................................	23	1	1.00	0.00	0.00	1.00	0.00	0.00
.............................................TCTTGGA--------------C------TCTTGATAAGCTCAATTAACT...........................	29	1	1.00	0.00	0.00	0.00	0.00	1.00
...............GTAAGCCGTGTTTGAACT........................................................................................	18	1	1.00	0.00	0.00	0.00	1.00	0.00

droEre2

ACGAATCTGTTCAGTGTAAGCAGTGTTTGAACTCGATCT-G-GGATCTTGGA--------------C------TCTTGATAAGCTCAATTAACTGTTT----GCAGCGGACGGCATCTTCT	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
...............................................................................TAAGCTCAATTAACTGTTT----GCA................	22	1	265.00	0.00	55.00	0.00	210.00
...............................................................................TAAGCTCAATTAACTGTTT----GC.................	21	1	212.00	2.00	16.00	0.00	194.00
...............................................................................TAAGCTCAATTAACTGTTT----G..................	20	1	136.00	0.00	13.00	0.00	123.00
...............................................................................TAAGCTCAATTAACTGTTT----GCAG...............	23	1	130.00	6.00	6.00	1.00	117.00
...............................................................................TAAGCTCAATTAACTGTTT----GCAGA..............	24	1	19.00	0.00	4.00	0.00	15.00
...............GTAAGCAGTGTTTGAACTCGATC...................................................................................	23	1	8.00	0.00	2.00	0.00	6.00
.................................................................................AGCTCAATTAACTGTTT----GCAGT..............	22	1	8.00	0.00	1.00	7.00	0.00
...............................................................................TAAGCTCAATTAACTGTTT----GCAGTT.............	25	1	7.00	0.00	0.00	0.00	7.00
...............................................................................TAAGCTCAATTAACTGTTT----GCAGT..............	24	1	7.00	0.00	4.00	0.00	3.00
...............................................................................TAAGCTCAATTAACTGTTT----GCAA...............	23	1	4.00	0.00	0.00	0.00	4.00
...............................................................................TAATCTCAATTAACTGTTT----GCA................	22	1	4.00	0.00	0.00	0.00	4.00
...............GTAAGCAGTGTTTGAACT........................................................................................	18	1	4.00	0.00	0.00	0.00	4.00
...............................................................................TAAGCTAAATTAACTGTTT----GCA................	22	1	4.00	0.00	0.00	0.00	4.00
...............................................................................TAAGCTCAATTAACTGTTT----GCAGTA.............	25	1	3.00	0.00	0.00	0.00	3.00
...............................................................................TAAGCTCAATTAACTGTCT----GC.................	21	1	3.00	0.00	0.00	0.00	3.00
................TAAGCAGTGTTTGAACTCGATC...................................................................................	22	1	3.00	0.00	1.00	0.00	2.00
...............GTAAGCAGTGTTTGAACTCG......................................................................................	20	1	3.00	0.00	0.00	0.00	3.00
...............................................................................TAAGCTCAATTAACTGTTT----TCA................	22	1	3.00	0.00	0.00	0.00	3.00
...AATCTGxTCAGTGTAAGGA...................................................................................................	18	1	2.00	2.00	0.00	0.00	0.00
...............GTAAGCAGTGTTTGAACTCGATCT-G-G..............................................................................	26	1	2.00	0.00	0.00	0.00	2.00
...............................................................................TAATCTCAATTAACTGTTT----G..................	20	1	2.00	0.00	0.00	0.00	2.00
...............................................................................TAAGCTCAATTAACTGTTT----TC.................	21	1	2.00	0.00	0.00	0.00	2.00
...............GTAAGCAGTGTTTGAACTCGA.....................................................................................	21	1	2.00	0.00	0.00	0.00	2.00
...............................................................................TAAGCTCAATTAACTGTTT----GCAT...............	23	1	2.00	0.00	0.00	0.00	2.00
...............................................................................TAAGATCAATTAACTGTTT----GCA................	22	1	2.00	0.00	0.00	0.00	2.00
...............................................................................TAAGCTCAATTAACTTTTT----G..................	20	1	2.00	0.00	0.00	0.00	2.00
...............................................................................CAAGCTCAATTAACTGTTT----GC.................	21	1	2.00	0.00	0.00	0.00	2.00
...............................................................................TAAGCTCAATTAACTGTT........................	18	1	2.00	0.00	0.00	0.00	2.00
...............................................................................TAACCTCAATTAACTGTTT----GCAG...............	23	1	2.00	0.00	0.00	0.00	2.00
................................................................................AAGCTCAATTAACTGTTT----GCAGT..............	23	1	2.00	0.00	0.00	2.00	0.00
................................................................................AAGCTCAATTAACTGTTT----GC.................	20	1	1.00	0.00	0.00	0.00	1.00
.................AACCAGTGTTTCAACTCGATCT-.................................................................................	22	1	1.00	1.00	0.00	0.00	0.00
...............................................................................TAAGCTCAATTAACTGTTT----GCATT..............	24	1	1.00	0.00	1.00	0.00	0.00
...............................................................................TAATCTCAATTAACTGTTT----GCAG...............	23	1	1.00	0.00	0.00	0.00	1.00
...............................................................................TAAGCTCAATTAAATGTTT----GA.................	21	1	1.00	0.00	0.00	0.00	1.00
...............................................................................TAAGCTAAATTAACTGTTT----GC.................	21	1	1.00	0.00	0.00	0.00	1.00
...............................................................................TAAGCTCAATTAACTGTTT----...................	19	1	1.00	0.00	0.00	0.00	1.00
..............................................................................CTAAGCTCAATTAACTGTTT----GCA................	23	1	1.00	0.00	1.00	0.00	0.00
..............................................................................CTAAGCTCAATTAACTGTTT----GCAG...............	24	1	1.00	0.00	0.00	0.00	1.00
...............................................................................TAAGCTCAATTAACTGATT----GCA................	22	1	1.00	0.00	1.00	0.00	0.00
...............................................................................TAAGCTCAATTAAGTGTTT----GCAG...............	23	1	1.00	0.00	0.00	0.00	1.00
...............................................................................GAAGCTCAATTAACTGTTT----G..................	20	1	1.00	0.00	0.00	0.00	1.00
...............................................................................TAAGCTCAGTTAACTGTTT----GC.................	21	1	1.00	0.00	0.00	0.00	1.00
...............................................................................TAAGCTCAATTAAATGTTT----GC.................	21	1	1.00	0.00	0.00	0.00	1.00
...............................................................................TAAGCTCAATTAACTGTTT----GCG................	22	1	1.00	0.00	0.00	0.00	1.00
...............................................................................TAAGCTCAATTGACTGTTT----GCA................	22	1	1.00	0.00	0.00	0.00	1.00
..............................................................................ATAAGCTCAATTAACTGTTT----GC.................	22	1	1.00	0.00	0.00	0.00	1.00
...............................................................................TAAGCTCAATTAACTTTTT----GCAGA..............	24	1	1.00	0.00	0.00	0.00	1.00
.................................................................................AGCTCAATTACCTGTTT----GCAGT..............	22	1	1.00	0.00	0.00	1.00	0.00
...............................................................................TAAGCTCAATTAACTGTTT----ACA................	22	1	1.00	0.00	0.00	0.00	1.00
...............................................................................TAAGCTCCATTAACTGTTT----GCAG...............	23	1	1.00	0.00	0.00	0.00	1.00
...............................................................................TACGCTCAATTAACTGTTT----GCA................	22	1	1.00	0.00	0.00	0.00	1.00
...............................................................................TAAGCTCGATTAACTGTTT----GC.................	21	1	1.00	0.00	0.00	0.00	1.00
...............................................................................TAAGCTCAATTAACTxTTT----GCA................	21	1	1.00	0.00	0.00	0.00	1.00
...............GTAAGCAGTGTTTGAACTCGATCT-G-...............................................................................	25	1	1.00	0.00	0.00	0.00	1.00
...............................................................................TAAGCTCCATTAACTGTTT----GCAGT..............	24	1	1.00	1.00	0.00	0.00	0.00
...............................................................................TAAGCTCAATTAAATGTTT----G..................	20	1	1.00	0.00	0.00	0.00	1.00
...............GTAAGCAGTGTTTGAACTCGAT....................................................................................	22	1	1.00	1.00	0.00	0.00	0.00
...............................................TTGGA--------------C------TCTTGATAAGCTCA..................................	20	1	1.00	0.00	0.00	0.00	1.00
...............................................................................CAAGCTCAATTAACTGTTT----GCA................	22	1	1.00	0.00	0.00	0.00	1.00
...............................................................................TAAGCTCAATTAACTGTTG----...................	19	1	1.00	0.00	0.00	0.00	1.00
...............GTAAGCAGTGTTTGAACTC.......................................................................................	19	1	1.00	0.00	0.00	0.00	1.00
...AATCTGxTCAGTGTAAGTA...................................................................................................	18	1	1.00	0.00	0.00	1.00	0.00
.......TGTTCAATGTAAGTAGTG................................................................................................	18	1	1.00	0.00	0.00	0.00	1.00
...............GTAAGCAGTGTTTGAACTCGATCT-G-GG.............................................................................	27	1	1.00	0.00	1.00	0.00	0.00
...............................................................................TAAGCTCAATTAACTTTTT----GC.................	21	1	1.00	0.00	0.00	0.00	1.00
..............................................................................ATAAGCTCAATTAACTGTTT----GCA................	23	1	1.00	0.00	1.00	0.00	0.00
...............................................................................TAAGTTCAATTAACTGTTT----G..................	20	1	1.00	0.00	0.00	0.00	1.00
...............................................................................TAAGCTCAATTAACTGTTT----GCAAA..............	24	1	1.00	0.00	1.00	0.00	0.00
...............GTAAGCAGTGTTTGAACTCGATCT-T-TG.............................................................................	27	1	1.00	1.00	0.00	0.00	0.00
.............................................TCTTGGA--------------C------TCTTGATAAGCTCA..................................	22	1	1.00	1.00	0.00	0.00	0.00
...............................................................................TAAGCTCAATTAACTTTTT----GCA................	22	1	1.00	0.00	0.00	0.00	1.00
...............................................................................TAAGCTCAATTAACTGTTT----GCAC...............	23	1	1.00	0.00	0.00	0.00	1.00
....................CAGTGTTTGAACTCGATCT-G-GG.............................................................................	22	1	1.00	0.00	0.00	0.00	1.00
...............................................................................TAAGCTCAATTAACTGTTT----GGA................	22	1	1.00	0.00	0.00	0.00	1.00
...............................................................................TAAGCTTAATTAACTGTTT----GCAG...............	23	1	1.00	0.00	0.00	0.00	1.00
...............GTAAGTAGTGTTTGAACTCGATC...................................................................................	23	1	1.00	0.00	0.00	0.00	1.00
...............................................................................TGAGCTCAATTAACTGTTT----G..................	20	1	1.00	0.00	0.00	0.00	1.00
.............................................................................GATAAGCTCAATTAACTGTTT----GCAGT..............	26	1	1.00	0.00	0.00	0.00	1.00
...............................................................................TAAGTTCAATTAACTGTTT----GCAG...............	23	1	1.00	0.00	0.00	0.00	1.00
...............................................................................TAAGCTAAATTAACTGTTT----GCAA...............	23	1	1.00	0.00	0.00	0.00	1.00
.................................CGATCT-G-GGATCTTGGA--------------C------TCTTGATA........................................	26	1	1.00	0.00	0.00	0.00	1.00
...............................................................................TAACCTCAATTAACTGTTT----GCA................	22	1	1.00	0.00	0.00	0.00	1.00
...............................................................................TAAGCTCAATTAACTGTTT----CCA................	22	1	1.00	0.00	0.00	0.00	1.00
...............................................................................TAAGCTCAATTAGCTGTTT----GCA................	22	1	1.00	0.00	0.00	0.00	1.00
...............................................................................TAAGCTTAATTAACTGTTT----GC.................	21	1	1.00	0.00	0.00	0.00	1.00
...............................................................................TAGGCTCAATTAACTGTTT----GCA................	22	1	1.00	0.00	0.00	0.00	1.00
...............................................................................TAAGATCAATTAAATGTTT----GC.................	21	1	1.00	0.00	0.00	0.00	1.00
...............................................................................TAAGCTCAATTAACxxTTT----GCAG...............	21	1	1.00	0.00	0.00	0.00	1.00
...............................................................................TACGCTAAATTAACTGTTT----GC.................	21	1	1.00	0.00	0.00	0.00	1.00
...............................................................................TAAGCTCAATTAGCTGTTT----G..................	20	1	1.00	0.00	0.00	0.00	1.00
...............................................................................TAAGCTCAATTAACTTTTT----GCAG...............	23	1	1.00	0.00	0.00	0.00	1.00
...............................................................................TAAGCTCAATTAACTGxTT----GCAG...............	22	1	1.00	0.00	0.00	0.00	1.00
...............................................................................TAAGCGCAATTAACTGTTT----GCA................	22	1	1.00	0.00	0.00	0.00	1.00

droAna3

ACGAATCCGTACAGTGTAAGCAGTGTTTGAACTCGATCT-T--------GGAATA---------G-C------TCCCGATAAGCTCAATTAACTGTTT----GCAGCCGATGGCATCTTCT	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
...............................................................................TAAGCTCAATTAACTGTTT----G..................	20	1	136.00	5.00	105.00	26.00	0.00
...............................................................................TAAGCTCAATTAACTGTTT----GC.................	21	1	131.00	4.00	107.00	19.00	1.00
...............................................................................TAAGCTCAATTAACTGTTT----GCAG...............	23	1	85.00	2.00	65.00	7.00	11.00
...............................................................................TAAGCTCAATTAACTGTTT----GCA................	22	1	79.00	8.00	43.00	26.00	2.00
...............................................................................TAAGCTCAATTAACTGTTT----GCAGT..............	24	1	21.00	8.00	5.00	8.00	0.00
...............GTAAGCAGTGTTTGAACTCGATC...................................................................................	23	1	7.00	0.00	7.00	0.00	0.00
...............................................................................TAAGCTCAATTAACTGTTT----GCAGTT.............	25	1	6.00	1.00	3.00	2.00	0.00
...............GTAAGCAGTGTTTGAACTC.......................................................................................	19	1	3.00	0.00	2.00	0.00	1.00
...............................................................................TAATCTCAATTAACTGTTT----GC.................	21	1	3.00	0.00	3.00	0.00	0.00
...............GTAAGCAGTGTTTGAACTCG......................................................................................	20	1	3.00	0.00	3.00	0.00	0.00
...............................................................................TAATCTCAATTAACTGTTT----G..................	20	1	3.00	0.00	3.00	0.00	0.00
..............................................................................ATAAGCTCAATTAACTGTTT----G..................	21	1	3.00	0.00	3.00	0.00	0.00
...............................................................................TAAGTTCAATTAACTGTTT----GC.................	21	1	2.00	0.00	2.00	0.00	0.00
...............GTAAGCAGTGTTTGAACTCGATCT-T--------GG......................................................................	27	1	2.00	1.00	1.00	0.00	0.00
...............................................................................TAAGCTCAATTAACTGTTT----GCAGA..............	24	1	2.00	1.00	0.00	1.00	0.00
...............................................................................TAAGCTCAATTAACTGTTT----GA.................	21	1	2.00	0.00	1.00	1.00	0.00
................GTAGCAGTGTTTGAACTCGATC...................................................................................	22	1	2.00	0.00	2.00	0.00	0.00
...............................................................................TAAGATCAATTAACTGTTT----G..................	20	1	2.00	0.00	1.00	1.00	0.00
...............................................................................TAAGCTAAATTAACTGTTT----G..................	20	1	2.00	0.00	2.00	0.00	0.00
...............GTAAGCAGTGTTTGAACT........................................................................................	18	1	2.00	0.00	2.00	0.00	0.00
...............................................................................TAAGCTCAATTAACTGTTT----TC.................	21	1	1.00	0.00	1.00	0.00	0.00
...............................................................................TAAGCTCAATTAATTGTTT----GCT................	22	1	1.00	0.00	0.00	1.00	0.00
...............................................................................CACGCTCAATTAACTGTTT----GCAG...............	23	1	1.00	0.00	1.00	0.00	0.00
..................................GATCT-T--------GGAATA---------G-C------TCCCGATAA.......................................	23	1	1.00	1.00	0.00	0.00	0.00
...............................................................................TAGGCTCAATTAACTGTTT----GC.................	21	1	1.00	0.00	1.00	0.00	0.00
...............................................................................TAAGCTCAATTAACTGTTT----GCAA...............	23	1	1.00	0.00	1.00	0.00	0.00
............................GAACTCGAGCG-T--------GGAATA---------G-C------T...............................................	21	1	1.00	1.00	0.00	0.00	0.00
...............................................................................TAAGATCAATTAACTATTT----GCA................	22	1	1.00	0.00	0.00	1.00	0.00
...............GTAAGCAGTGTTTGAACTCGATCT-.................................................................................	24	1	1.00	0.00	1.00	0.00	0.00
...............................................................................TAAGCTCAATTAACCGTTT----GCAG...............	23	1	1.00	0.00	1.00	0.00	0.00
...............................................................................TAAGCTCAATTAACCGTTT----GC.................	21	1	1.00	0.00	1.00	0.00	0.00
...............................................................................TAAGCTCAATTAACTGTGT----T..................	20	1	1.00	0.00	0.00	1.00	0.00
...............................................................................TAAGATCAATTAACTGTTT----GCT................	22	1	1.00	0.00	0.00	1.00	0.00
...............................................................................TAAGCCCAATTAACTGTTT----GC.................	21	1	1.00	0.00	1.00	0.00	0.00
..............................................................................ATAAGCTCAATTAACTGTTT----GCAG...............	24	1	1.00	0.00	1.00	0.00	0.00
...............................................................................TAAGCACAATTAACTGTCT----G..................	20	1	1.00	0.00	0.00	1.00	0.00
..............................................................................ATAAGCTCACTCAACTGTTT----G..................	21	1	1.00	0.00	0.00	1.00	0.00
..................................................GAATA---------G-C------TCCCGATAATCT....................................	19	1	1.00	0.00	0.00	0.00	1.00
...............................................................................TAAGATCAATTAACTGTTT----GC.................	21	1	1.00	0.00	1.00	0.00	0.00
...............................................................................TAAGCTCAATTAACTGTCT----GCAT...............	23	1	1.00	0.00	1.00	0.00	0.00
...............GTAAGCAGTGTTTGAACTAGA.....................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
...............................CTCGATCT-T--------GGAATA---------G-C------TCC.............................................	20	1	1.00	1.00	0.00	0.00	0.00
......................................T-T--------GGAATA---------G-C------TCCCGATAAGCT....................................	22	1	1.00	0.00	1.00	0.00	0.00
...............................................................................TAAGCTCAATTAACTTTTT----GCA................	22	1	1.00	0.00	1.00	0.00	0.00
...............................................................................TAAGCTCGATTAACTGTTT----GCAGT..............	24	1	1.00	0.00	0.00	1.00	0.00
...............................................................................TAAGCTCAATTCACTGTTT----G..................	20	1	1.00	0.00	0.00	1.00	0.00
...............................................................................TAATCTCAATTAACTGTTT----T..................	20	1	1.00	0.00	1.00	0.00	0.00
...............................................................................TAAGCTCATTTAACTTTTT----GCA................	22	1	1.00	0.00	1.00	0.00	0.00
..............................................................................ATAATCTCAATTAACTGTTT----GC.................	22	1	1.00	0.00	1.00	0.00	0.00
...............GTAAGCAGTGTTTGAACTCGAT....................................................................................	22	1	1.00	0.00	0.00	1.00	0.00
...............................................................................TAAGATCAATTAACTGATT----GCA................	22	1	1.00	0.00	0.00	1.00	0.00
...............................................................................TAAGCTCAATTAACTCCTT----GCA................	22	1	1.00	0.00	0.00	1.00	0.00
...............................................................................TAAGCTCAATTAATTGTTT----GCAG...............	23	1	1.00	0.00	1.00	0.00	0.00
...............................................................................TAAGCTCAATTAACTGTTA----GC.................	21	1	1.00	0.00	0.00	1.00	0.00
...............................................................................TAAGCTCAATTAACTGGTT----G..................	20	1	1.00	0.00	0.00	1.00	0.00
...............................................................................TAAGCTCTATTAACTGTGT----G..................	20	1	1.00	0.00	0.00	1.00	0.00
................................................................................AAGCTCAATTAACTGTTT----GCA................	21	1	1.00	0.00	0.00	1.00	0.00
...............................................................................TAAGCTCAGTTAACTGTTT----GCA................	22	1	1.00	0.00	1.00	0.00	0.00
...............................................................................TAGGCTCAATTAACTGTTT----G..................	20	1	1.00	0.00	1.00	0.00	0.00
...............................................................................TAAGCTCACTTACCTGTTT----GCA................	22	1	1.00	0.00	0.00	1.00	0.00
...............................................................................TAAGCTCAATTAACxGTTT----GCAGT..............	23	1	1.00	0.00	1.00	0.00	0.00
...............................................................................TAAGCTCATTTAACTGTTT----T..................	20	1	1.00	0.00	0.00	1.00	0.00
...............................................................................TAAGCTCAATTAACTGTTT----T..................	20	1	1.00	1.00	0.00	0.00	0.00
...............................................................................TAAGCTCAATTAACTGATT----G..................	20	1	1.00	0.00	1.00	0.00	0.00
...............................................................................TAAGCTCAATTCACTGTTT----GC.................	21	1	1.00	0.00	1.00	0.00	0.00
...............................................................................TAAGCTCAATTGACTGTTT----GC.................	21	1	1.00	1.00	0.00	0.00	0.00
...............................................................................TAAGCTCAATTAACTGTTT----...................	19	1	1.00	0.00	0.00	1.00	0.00
...............................................................................TAAGCGCAATTAACTGTTT----GCAG...............	23	1	1.00	0.00	0.00	1.00	0.00
...............................................................................TAAGCTAAATTAACTGTTT----GC.................	21	1	1.00	0.00	1.00	0.00	0.00
...............................................................................GAAGCTCAATTAACTGTTT----GC.................	21	1	1.00	0.00	0.00	1.00	0.00
...............GTAAGCAGCGTTTGAACT........................................................................................	18	1	1.00	0.00	1.00	0.00	0.00
...............................................................................TAAGCTCAATTAACTGTTT----TCAG...............	23	1	1.00	0.00	0.00	0.00	1.00
......................................T-T--------GGAATA---------G-C------TCCCGATAAGC.....................................	21	1	1.00	0.00	0.00	1.00	0.00
...............................................................................TAAGCTCAATTAACTGCTT----G..................	20	1	1.00	0.00	1.00	0.00	0.00
...............................................................................TAAGCTCAATTAAGTGTTT----GCAG...............	23	1	1.00	0.00	0.00	0.00	1.00
...............GTAAGCAGTGTATGAACTC.......................................................................................	19	1	1.00	1.00	0.00	0.00	0.00
...............................................................................TAAGCTCATTTAACTGTTT----GCA................	22	1	1.00	0.00	1.00	0.00	0.00

dp4

ACGAATCGATACAGTGTAAGCAGCGATTGA--TCAATCttTTGt--------tTgGttTgGttTgG--------ttTGATAAACTCCATTAACTGTTT----GCAGCCGATGGCATCTTCT	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
..................................AATCTTTTGG--------TTGGxTTGGTT..........................................................	20	1	1.00	1.00	0.00	0.00	0.00

droPer1

ACGAATCGATACAGTGTAAGCAGCGATTGA--TCAATCttTTGt--------tTgGttTgGttTgG--------ttTGATAAACTCCATTAACTGTTT----GCAGCCGATGGCATCTTCT	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
...................................GTTTTTTGT--------TTGGTTTGGTT..........................................................	20	1	2.00	2.00	0.00	0.00	0.00	0.00
.......GATACAGTGTACGGAGCG................................................................................................	18	1	1.00	0.00	1.00	0.00	0.00	0.00
......................................TGTTGT--------TGGGTTTGGTTT.........................................................	18	1	1.00	0.00	1.00	0.00	0.00	0.00
........................................TTGT--------TTGGTTTGGGTTTG--------...............................................	18	1	1.00	1.00	0.00	0.00	0.00	0.00
..........................................GT--------TTGATTTGGTTTGG--------TTC............................................	19	1	1.00	1.00	0.00	0.00	0.00	0.00
.........................................TxT--------TGGGTTTGGTTTGG--------GTT............................................	19	1	1.00	1.00	0.00	0.00	0.00	0.00
........................................TGGT--------TTGGTTTGGTTTGG--------T..............................................	19	2	0.50	0.50	0.00	0.00	0.00	0.00
....................................TTGTTTGT--------TTGGTTTGGTTT.........................................................	20	1	1.00	1.00	0.00	0.00	0.00	0.00
...............................................................................TAAGCTCAATTAACTGTTT----GCA................	22	1	1.00	0.00	1.00	0.00	0.00	0.00
.....................................................TGGTTTGGTTTGG--------TTTGGT.........................................	19	2	0.50	0.50	0.00	0.00	0.00	0.00
....................................TCTTTTGT--------TTCGTTTGCT...........................................................	18	1	1.00	0.00	0.00	0.00	0.00	1.00
...............GTAAGCAGCGATTGA--TCAAT....................................................................................	20	1	1.00	1.00	0.00	0.00	0.00	0.00
.......GATGCAGTGTAAGGAGCG................................................................................................	18	1	1.00	1.00	0.00	0.00	0.00	0.00

droWil1

ATGAATCCATGCAATGTGAGTT--TT--------------TTGA--------TTTTCTTGTTTAA-T------TTCGAAAAACTTTAATCGACTGTATTCTATCAGCTGATGGCATCTTCT	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
.........................G--------------TTGA--------TTTTATTGTTTAA-.......................................................	18	1	2.00	0.00	2.00	0.00	0.00

droVir3

ACGAATCAATGAAATGTAAGCAGTGCTTGAGCTTATTCT-CTGG------------CTTCATTTGAC--CATTTTCTGATAAGCTCAATTAACTGTTT----GCAGCGGATGCCGCCCTCT	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
...............GTAAGCAGTGCTTGAGCTTA......................................................................................	20	1	499.00	468.00	19.00	8.00	3.00	1.00
.................................................................................AGCTCAATTAACTGTTT----GCAGT..............	22	1	136.00	22.00	104.00	7.00	2.00	1.00
...............................................................................TAAGCTCAATTAACTGTTT----G..................	20	1	18.00	0.00	18.00	0.00	0.00	0.00
...............................................................................TAAGCTCAATTAACTGTTT----GC.................	21	1	15.00	0.00	5.00	0.00	2.00	8.00
...............................................................................TAAGCTCAATTAACTGTTT----GCA................	22	1	13.00	3.00	10.00	0.00	0.00	0.00
................................................................................AAGCTCAATTAACTGTTT----GCAGT..............	23	1	12.00	7.00	3.00	2.00	0.00	0.00
.................................................................................AGCTCAATTAACTGTTT----GCAGA..............	22	1	6.00	1.00	5.00	0.00	0.00	0.00
...............GTAAGCAGTGCTTGAGCTT.......................................................................................	19	1	5.00	1.00	3.00	0.00	0.00	1.00
...............GTAAGCAGTGCTTGAGCTTATT....................................................................................	22	1	4.00	0.00	4.00	0.00	0.00	0.00
.................................................................................AGCTCAATTAACTGTTT----GCA................	20	1	3.00	0.00	3.00	0.00	0.00	0.00
...............GTAAGCAGTGCTTGAGCATA......................................................................................	20	1	3.00	3.00	0.00	0.00	0.00	0.00
.................................................................................AGCTCAATTAACTGTTT----GCAGTC.............	23	1	3.00	1.00	2.00	0.00	0.00	0.00
...............................................................................TAAGCTCAATTAACTGTTT----GCAG...............	23	1	3.00	0.00	2.00	1.00	0.00	0.00
.................................................................................AGCTCAATTAACTGTTT----GCAGTT.............	23	1	3.00	0.00	3.00	0.00	0.00	0.00
...............GTAAGCAGTGCTTGCGCTTA......................................................................................	20	1	3.00	2.00	0.00	1.00	0.00	0.00
...............................................................................TAAGCTCAATTAACTGTT........................	18	1	2.00	0.00	0.00	0.00	0.00	2.00
...............GTAAGCAGTGCTTGAGCTTT......................................................................................	20	1	2.00	1.00	1.00	0.00	0.00	0.00
.................................................................................AGCGCAATTAACTGTTT----GCAGT..............	22	1	2.00	0.00	2.00	0.00	0.00	0.00
.................AAGCAGTGCTTGAGCTTA......................................................................................	18	1	2.00	2.00	0.00	0.00	0.00	0.00
.................................................................................AGCTCAATTAACTGTTT----GCAG...............	21	1	2.00	0.00	2.00	0.00	0.00	0.00
...............................................................................TAAGCTCAATTAACTGTTT----...................	19	1	2.00	0.00	2.00	0.00	0.00	0.00
...............................................................................TAAGCTCAATTAACTGTTT----GCAGA..............	24	1	2.00	2.00	0.00	0.00	0.00	0.00
...............GTAAGCAGTGCTTGAGCTAA......................................................................................	20	1	1.00	1.00	0.00	0.00	0.00	0.00
...............................................................................TAAGCTCAATTAACTGTTT----TC.................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
...............................................................................TAAGCTCAATTAACTGCTT----GCC................	22	1	1.00	0.00	1.00	0.00	0.00	0.00
...............GTAAGCGGTGCTTGAGCTTT......................................................................................	20	1	1.00	0.00	1.00	0.00	0.00	0.00
................................................................................AAGCTCAATTAACTGTTT----CCAGT..............	23	1	1.00	0.00	1.00	0.00	0.00	0.00
...............................................................................TAAGCGCAATTAACTGATT----GC.................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
................................................................................AAGCTCAATTAACTGTTT----GCAGTC.............	24	1	1.00	1.00	0.00	0.00	0.00	0.00
................................................................................AAGCTCAATTAACTGTTT----GC.................	20	1	1.00	0.00	1.00	0.00	0.00	0.00
...............GTAAGCAGTGCTTGAGATTA......................................................................................	20	1	1.00	1.00	0.00	0.00	0.00	0.00
...............GTAAGCAGTGCTCGAGCTT.......................................................................................	19	1	1.00	1.00	0.00	0.00	0.00	0.00
...............GTAAGCAGTGCTTGAACTTA......................................................................................	20	1	1.00	1.00	0.00	0.00	0.00	0.00
.....................AGTGCTTGAGCTTATTCT-CT...............................................................................	20	1	1.00	0.00	0.00	1.00	0.00	0.00
...............GTATGCAGTGCTTGAGCTTAT.....................................................................................	21	1	1.00	1.00	0.00	0.00	0.00	0.00
...............GTAAGCAGAGCTTGAGCTTA......................................................................................	20	1	1.00	1.00	0.00	0.00	0.00	0.00
...............................................................................TAAGCTCAATTAACTGTAT----GCA................	22	1	1.00	1.00	0.00	0.00	0.00	0.00
...............................................................................TAAGCTCAATTAACTCTGT----G..................	20	1	1.00	0.00	1.00	0.00	0.00	0.00
...............GTAAGCAGTGCTTGAGCTTG......................................................................................	20	1	1.00	0.00	1.00	0.00	0.00	0.00
.................................................................................AGGTCAATTAACTGTTT----GCAGT..............	22	1	1.00	1.00	0.00	0.00	0.00	0.00
...............GTAAGTAGTGCTTGAGCTT.......................................................................................	19	1	1.00	0.00	0.00	0.00	0.00	1.00
...............GTAAGCAGTGCTGGAGCT........................................................................................	18	1	1.00	0.00	0.00	1.00	0.00	0.00
.................................................................................AGCTCAATTAACTATTT----GCAGC..............	22	1	1.00	0.00	1.00	0.00	0.00	0.00
.................................................................................AGCTCAATTACCTGTTT----GCAGT..............	22	1	1.00	0.00	0.00	1.00	0.00	0.00
...............................................................................TAAGCTCAATTAACTGTTT----ACA................	22	1	1.00	0.00	1.00	0.00	0.00	0.00
...............GTAAGCAGTTCTTGAGCTTA......................................................................................	20	1	1.00	1.00	0.00	0.00	0.00	0.00
...............GTAAGCAGTGCTTGAGTTT.......................................................................................	19	1	1.00	1.00	0.00	0.00	0.00	0.00
................................................................................AAGCTCAATTAACTGTTT----GCA................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
.................................................................................AGCTCAATTAACTGTCT----GCAGT..............	22	1	1.00	0.00	1.00	0.00	0.00	0.00
...............GGAAGCAGTGCTTGAGCGTA......................................................................................	20	1	1.00	0.00	0.00	1.00	0.00	0.00
...............GTAAGCAGGGCTTGAGCTTA......................................................................................	20	1	1.00	1.00	0.00	0.00	0.00	0.00
...............GTAAGCAGCGCTTGAGCTTA......................................................................................	20	1	1.00	1.00	0.00	0.00	0.00	0.00
...............GTAAGCAGTGCTTGAGCTGA......................................................................................	20	1	1.00	1.00	0.00	0.00	0.00	0.00
.................................................................................AGCTCAATTAGCTGTTT----GCAGT..............	22	1	1.00	0.00	1.00	0.00	0.00	0.00
...................................................................................CTCAATTAACTGTTT----GCAG...............	19	1	1.00	0.00	1.00	0.00	0.00	0.00
...............................................................................TAAGCTCAATTAACAGTTT----GCA................	22	1	1.00	1.00	0.00	0.00	0.00	0.00
................................................................................AAGCTCAATTAACTGTTT----GCAG...............	22	1	1.00	0.00	1.00	0.00	0.00	0.00
...............................................................................TAAGCTCAATTAACTGTCT----GCA................	22	1	1.00	0.00	1.00	0.00	0.00	0.00
......................GTGCTTGAGCTTATTCT-CT...............................................................................	19	1	1.00	0.00	0.00	1.00	0.00	0.00
...............GTAAGCAGTGCTTGAGCTTAA.....................................................................................	21	1	1.00	1.00	0.00	0.00	0.00	0.00
...............................................................................TAAGCTCAATTAACTGTTT----GCT................	22	1	1.00	0.00	1.00	0.00	0.00	0.00
...............................................................................TAAGCTCAATTAACTGTTT----C..................	20	1	1.00	0.00	1.00	0.00	0.00	0.00
...............................................................................TAAGCTCAATTAACTGTTT----GCAGT..............	24	1	1.00	1.00	0.00	0.00	0.00	0.00
...............GTAAGCAGTGCTTGAGCTTAT.....................................................................................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
...............GTAAGCAGTGCTTGAGCTA.......................................................................................	19	1	1.00	1.00	0.00	0.00	0.00	0.00

droMoj3

ATGAGTCCATGAAATGTAAGCAGTGTTTGAACTAAATCT-CTGG--------CTACTTGGCCGTA--------TATTGATAAGCTCAACTAACTGTTT----GCAGCGGACACCTATTTGG	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
...............................................................................TAAGCTCAACTAACTGTTT----GCAGT..............	24	1	30.00	13.00	9.00	4.00	4.00
...............................................................................TAAGCTCAACTAACTGTTT----GC.................	21	1	26.00	3.00	12.00	11.00	0.00
...............................................................................TAAGCTCAACTAACTGTTT----GCA................	22	1	23.00	4.00	9.00	6.00	4.00
...............................................................................TAAGCTCAACTAACTGTTT----GCAG...............	23	1	21.00	5.00	7.00	3.00	6.00
...............................................................................TAAGCTCAACTAACTGTTT----G..................	20	1	16.00	3.00	4.00	8.00	1.00
...............GTAAGCAGTGTTTGAACTAAATC...................................................................................	23	1	14.00	14.00	0.00	0.00	0.00
...............GTAAGCAGTGTTTGAACTAA......................................................................................	20	1	9.00	9.00	0.00	0.00	0.00
...............GTAAGCAGTGTTTGAACTAAA.....................................................................................	21	1	4.00	4.00	0.00	0.00	0.00
...............GTAAGCAGTGTTTGAACTAAAT....................................................................................	22	1	4.00	4.00	0.00	0.00	0.00
...............GTAAGCAGTGTTTGAACTAAATCT-CT...............................................................................	26	1	3.00	3.00	0.00	0.00	0.00
...............GTAAGCAGTGTTTGAACTAAATCT-.................................................................................	24	1	2.00	2.00	0.00	0.00	0.00
...............GTAAGCAGTGTTTGAACTA.......................................................................................	19	1	2.00	1.00	0.00	0.00	1.00
...............GTAAGCAGTGTTTGAACTAAATCT-CTGG--------.....................................................................	28	1	2.00	2.00	0.00	0.00	0.00
...............................................................................TAAGCTCAATTAACTGTTT----GC.................	21	1	2.00	0.00	0.00	2.00	0.00
...............................................................................TAAGCTCAACTACCTGTTT----G..................	20	1	2.00	0.00	1.00	1.00	0.00
..............................................................................CTAAGCTCAACTAACTGTTT----GCA................	23	1	1.00	0.00	0.00	0.00	1.00
.................................................................................AGCTCAACTAACTGTTT----GCAGT..............	22	1	1.00	1.00	0.00	0.00	0.00
..............................................................................ATAAGCTCAACTAACTGTTT----GC.................	22	1	1.00	0.00	1.00	0.00	0.00
...............................................................TA--------TATTGATAAGCTCAACTAACTGT.........................	25	1	1.00	1.00	0.00	0.00	0.00
...............GTAAGCAGAGTTTGAACTAAATCT-CT...............................................................................	26	1	1.00	1.00	0.00	0.00	0.00
...............................................................................TAAGCTCGACTGACTGTTT----GCAG...............	23	1	1.00	0.00	1.00	0.00	0.00
...............................................................................TAACCTCAACTAACTGTTT----G..................	20	1	1.00	0.00	1.00	0.00	0.00
...............................................................................TAAGCTCAACTAACTGTTT----GCAT...............	23	1	1.00	1.00	0.00	0.00	0.00
...............................................................................TAAGCTCAACTAACTGTTT----GT.................	21	1	1.00	0.00	0.00	1.00	0.00
...............GTAAGCAGTGTTTGAACTAAATCT-C................................................................................	25	1	1.00	1.00	0.00	0.00	0.00
...............................................................................TAAGCTCAACTAACTGTTT----GA.................	21	1	1.00	0.00	1.00	0.00	0.00
.......CATGAAATGTAAGCAGTGTTTGAA..........................................................................................	24	1	1.00	1.00	0.00	0.00	0.00
...............................................................TA--------TATTGATAAGCTCAACTAACTGTT........................	26	1	1.00	1.00	0.00	0.00	0.00
....................................................................................TCAACTAACTGTTT----GCAGT..............	19	1	1.00	0.00	1.00	0.00	0.00
...............................................................................TAAGCTCAACTAACTGTTT----GCAGC..............	24	1	1.00	0.00	1.00	0.00	0.00
...............................................................................TAAGCTCAATTAACTGTTT----GCA................	22	1	1.00	0.00	0.00	1.00	0.00
...............................................................................TAAGCTCAACTAACTGTTT----TCA................	22	1	1.00	0.00	0.00	1.00	0.00
...........................................................................TTGATAAGCTCAACTAACTGT.........................	21	1	1.00	1.00	0.00	0.00	0.00
...............................................................................TAAGCGCAACCAACTGTTT----GCA................	22	1	1.00	0.00	0.00	0.00	1.00
...............................................................................TAAGCTCAACTAACTGCTT----CC.................	21	1	1.00	0.00	0.00	1.00	0.00
...............................................................................TAAGCTCAACTAACTGTTT----GCAGTC.............	25	1	1.00	1.00	0.00	0.00	0.00
...............................................................................TAAGCTCAACCATCTGTTT----GCA................	22	1	1.00	0.00	0.00	1.00	0.00
...............GTAAGAAGTGTTTGAACTAA......................................................................................	20	1	1.00	1.00	0.00	0.00	0.00

droGri2

GCGAATCAATACAATGTAAGCAGTGTTTGAACTGAATAT-CTGGTTATCCGA--------------CTTCATATACTGATAAGCTCAATTCACTGTTT----GCAGCGGATGGCGTCTTCT	Size	Hit Count	Total Norm	V109 Male body
...............................................................................TAAGCTCAATTCACTGTTT----GCAGT..............	24	1	4.00	4.00
...............................................................................TAAGCTCAATTCACTGTTT----GCA................	22	1	2.00	2.00
................................................................................AAGCTCAATTCACTGTTT----GCAGT..............	23	1	1.00	1.00
...............................................................................TAAGCTCAATTCACTGTTT----G..................	20	1	1.00	1.00
...............................................................................TAAGCTCAATTCACTGTTT----GC.................	21	1	1.00	1.00
..............................................................................ATAAGCTCAATTCACTGTTT----GCAGT..............	25	1	1.00	1.00

12-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droAna3	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image

20-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droEug1	droBia1	droTak1	droEle1	droRho1	droFic1	droKik1	droAna3	droBip1	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image