Possible Orthologs for dme-mir-1007

droSim1 - 4 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
5	chrX:12920203-12920297 +	96.86	ACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATCTTGGTTCTTGGACTCTTGATAAGCTCAATTAACTGTTTGCAGCGGACGGGATCTTCT ACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATCTTGGTTCTTGGACTCTTGATAAGCTCAATTAACTGTTTGCAGCGGACGGCATCTTCT Size Hit Count Total Norm V044 Embryo M023 Head M024 Male body M025 Embryo ...............GTAAGCAGTGTTTGAACTCGATCTTGG..................................................... 27 1 298.00 1.00 3.00 279.00 15.00 .........................................................TAAGCTCAATTAACTGTTTGC................. 21 1 149.00 0.00 137.00 11.00 1.00 ...............GTAAGCAGTGTTTGAACTC............................................................. 19 1 96.00 1.00 7.00 77.00 11.00 .................AAGCAGTGTTTGAACTCGATCTTGG..................................................... 25 1 66.00 0.00 1.00 60.00 5.00 ..........................................TTCTTGGACTCTTGATAAGCTCA.............................. 23 1 64.00 0.00 0.00 63.00 1.00 ..........................................TTCTTGGACTCTTGATAAGCTC............................... 22 1 49.00 0.00 1.00 37.00 11.00 ..........................................TTCTTGGACTCTTGATAAGCT................................ 21 1 35.00 0.00 0.00 30.00 5.00 ............................................CTTGGACTCTTGATAAGCTCA.............................. 21 1 33.00 0.00 0.00 28.00 5.00 ...............GTAAGCAGTGTTTGAACTCGATC......................................................... 23 1 32.00 0.00 6.00 7.00 19.00 .........................................................TAAGCTCAATTAACTGTTTGCAG............... 23 1 25.00 10.00 12.00 1.00 2.00 ...............GTAAGCAGTGTTTGAACT.............................................................. 18 1 25.00 5.00 0.00 18.00 2.00 .......................TGTTTGAACTCGATCTTGG..................................................... 19 1 20.00 0.00 0.00 18.00 2.00 ............................................CTTGGACTCTTGATAAGCT................................ 19 1 19.00 0.00 0.00 19.00 0.00 ...................GCAGTGTTTGAACTCGATCTTGG..................................................... 23 1 18.00 0.00 0.00 14.00 4.00 ............................................CTTGGACTCTTGATAAGCTC............................... 20 1 18.00 0.00 0.00 16.00 2.00 ...........................................TCTTGGACTCTTGATAAGCTCA.............................. 22 1 17.00 1.00 0.00 12.00 4.00 ...............GTAAGCAGTGTTTGAACTCGATCT........................................................ 24 1 15.00 0.00 3.00 6.00 6.00 ......................GTGTTTGAACTCGATCTTGG..................................................... 20 1 13.00 1.00 0.00 10.00 2.00 ............................................CTTGGACTCTTGATAAGCTCAATTAAC........................ 27 1 13.00 0.00 0.00 10.00 3.00 ............................................CTTGGACTCTTGATAAGCTCAATTAACT....................... 28 1 13.00 0.00 0.00 12.00 1.00 ..........................................TTCTTGGACTCTTGATAAGC................................. 20 1 10.00 0.00 0.00 4.00 6.00 ...........................................TCTTGGACTCTTGATAAGCTC............................... 21 1 10.00 0.00 1.00 4.00 5.00 .....................................CTTGGTTCTTGGACTCTTGATAAGCT................................ 26 1 10.00 0.00 0.00 9.00 1.00 .....................AGTGTTTGAACTCGATCTTGG..................................................... 21 1 9.00 0.00 0.00 8.00 1.00 .........................................................TAAGCTCAATTAACTGTTTGCA................ 22 1 9.00 2.00 6.00 0.00 1.00 ............................................CTTGGACTCTTGATAAGC................................. 18 1 8.00 0.00 0.00 4.00 4.00 .........................................................TAAGCTCAATTAACTGTTTG.................. 20 1 8.00 0.00 8.00 0.00 0.00 ...............GTAAGCAGTGTTTGAACTCGATCTTGGT.................................................... 28 1 8.00 0.00 0.00 7.00 1.00 ..............................ACTCGATCTTGGTTCTTGGACT........................................... 22 1 7.00 0.00 1.00 4.00 2.00 .............................................TTGGACTCTTGATAAGCTC............................... 19 1 7.00 0.00 0.00 1.00 6.00 ............................................CTTGGACTCTTGATAAGCTCAA............................. 22 1 7.00 0.00 0.00 3.00 4.00 .........................................GTTCTTGGACTCTTGATAAGCTC............................... 23 1 6.00 0.00 0.00 5.00 1.00 ......................GTGTTTGAACTCGATCTTGGT.................................................... 21 1 6.00 0.00 0.00 3.00 3.00 ...........................................TCTTGGACTCTTGATAAGCT................................ 20 1 6.00 0.00 0.00 5.00 1.00 ...............GTAAGCAGTGTTTGAACTCGATCTTG...................................................... 26 1 5.00 0.00 0.00 3.00 2.00 ..........................................TTCTTGGACTCTTGATAAGCTCAA............................. 24 1 5.00 0.00 0.00 5.00 0.00 ..........................................TTCTTGGACTCTTGATAAGCTCAATTAAC........................ 29 1 5.00 0.00 0.00 5.00 0.00 .........................................GTTCTTGGACTCTTGATAAGCT................................ 22 1 5.00 0.00 0.00 2.00 3.00 .........................................................TAAGCTCAATTAACTGTT.................... 18 1 5.00 0.00 5.00 0.00 0.00 ...........................................TCTTGGACTCTTGATAAGCTCAATTAAC........................ 28 1 5.00 0.00 0.00 3.00 2.00 ..........................................TTCTTGGACTCTTGATAAGCC................................ 21 1 4.00 0.00 0.00 3.00 1.00 ..................................GATCTTGGTTCTTGGACTCTTG....................................... 22 1 4.00 0.00 0.00 4.00 0.00 .............................................TTGGACTCTTGATAAGCT................................ 18 1 4.00 0.00 0.00 3.00 1.00 ...............TTAAGCAGTGTTTGAACTCGATCTTGG..................................................... 27 1 4.00 0.00 0.00 4.00 0.00 ...........................................TCTTGGACTCTTGATAAGCTCAATTAACT....................... 29 1 4.00 0.00 0.00 3.00 1.00 ....................CAGTGTTTGAACTCGATCTTGG..................................................... 22 1 3.00 0.00 0.00 3.00 0.00 ..................AGCAGTGTTTGAACTCGATCTTGG..................................................... 24 1 3.00 0.00 0.00 3.00 0.00 ...............................CTCGATCTTGGTTCTTGGACTCTTGAT..................................... 27 1 3.00 0.00 0.00 2.00 1.00 ...........................................TCTTGGACTCTTGATAAGC................................. 19 1 3.00 0.00 0.00 1.00 2.00 ......................................TTGGTTCTTGGACTCTTGA...................................... 19 1 3.00 0.00 1.00 0.00 2.00
3	chr2R:14813704-14813788 +	41.54	ACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATCTTGGTTCTTGGACTCTTGATAAGCTCAATTAACTGTTTGCAGCGGACGGGATCTTCT- TCGTCCCTGCTCAGTAAGTGGAATATGTGCA----TACATATGTTTGAGCATCTTTGTAAGCACTAAAATCCAATATC-------CAGATCTCCTG Size Hit Count Total Norm V044 Embryo M023 Head M024 Male body M025 Embryo ..........................................GTTTGAGCATCTTTGTAAGCC................................. 21 1 1.00 0.00 1.00 0.00 0.00
10	chr3L_random:794954-794976 -	13.98	AC----GAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATCTTGGTTCTTGGACTCTTGATAAGCTCAATTAACTGTTTGCAGCGGACGGGATCTTCT ATGTGCGCAGCTGTGCAAAGCAA---------------------------------------------------------------------------- Size Hit Count Total Norm V044 Embryo M023 Head M024 Male body M025 Embryo		None
9	chr3L:17128874-17128885 -	7.53	ACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATCTTGGTTCTTGGACTCTTGATAAGCTCAATTAACTGTTTGCAGCGGACGGGATCTTCT ATGGAAATGTGC----------------------------------------------------------------------------------- Size Hit Count Total Norm V044 Embryo M023 Head M024 Male body M025 Embryo	None	None

droSec1 - 3 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
10	super_8:3474404-3474498 -	96.86	ACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATCTTGGTTCTTGGACTCTTGATAAGCTCAATTAACTGTTTGCAGCGGACGGGATCTTCT ACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATCTTGGTTCTTGGACTCTTGATAAGCTCAATTAACTGTTTGCAGCGGACGGCATCTTCT Size Hit Count Total Norm V113 Male body V114 Embryo V115 Head .........................................................TAAGCTCAATTAACTGTTTGCA................ 22 1 75.00 5.00 8.00 62.00 .........................................................TAAGCTCAATTAACTGTTTG.................. 20 1 71.00 6.00 1.00 64.00 .........................................................TAAGCTCAATTAACTGTTTGC................. 21 1 43.00 1.00 0.00 42.00 .........................................................TAAGCTCAATTAACTGTTTGCAG............... 23 1 41.00 4.00 16.00 21.00 .........................................................TAAGCTCAATTAACTGTTTGCAGT.............. 24 1 26.00 1.00 21.00 4.00 ...............GTAAGCAGTGTTTGAACT.............................................................. 18 1 23.00 0.00 18.00 5.00 .........................................................TAAGCTCAATTAACTGTTTGCAGA.............. 24 1 22.00 3.00 11.00 8.00 ...............GTAAGCAGTGTTTGAACTCGATCTTGG..................................................... 27 1 11.00 5.00 6.00 0.00 ...............GTAAGCAGTGTTTGAACTC............................................................. 19 1 9.00 2.00 6.00 1.00 ...............GTAAGCAGTGTTTGAACTCGATC......................................................... 23 1 6.00 0.00 6.00 0.00 ............................................CTTGGACTCTTGATAAGCTCA.............................. 21 1 6.00 2.00 4.00 0.00 .........................................................TAAGCTCAATTAACTGTTTGCAGTT............. 25 1 6.00 1.00 0.00 5.00 ..........................................TTCTTGGACTCTTGATAAGCTCA.............................. 23 1 5.00 2.00 2.00 1.00 ...............GTAAGCAGTGTTTGAACTCGATCT........................................................ 24 1 3.00 1.00 0.00 2.00 ...............GTAAGCAGTGTTTGAACTCG............................................................ 20 1 3.00 2.00 1.00 0.00 ...............GTAAGCAGTGTTTGAACTCGATCTTGGT.................................................... 28 1 3.00 3.00 0.00 0.00 ...............GTAAGCAGTGTTTGAACTCGATCTTG...................................................... 26 1 2.00 1.00 1.00 0.00 .........................................................TAAGCTCAATTAACTGTTT................... 19 1 2.00 0.00 1.00 1.00 ...................GCAGTGTTTGAACTCGATCTTGG..................................................... 23 1 2.00 0.00 2.00 0.00 .........................................................TAAGCCCAATTAACTGTTTG.................. 20 1 2.00 0.00 0.00 2.00 ..........................................TTCTTGGACTCTTGATAAGCTC............................... 22 1 2.00 1.00 1.00 0.00 .........................................................TAAGCTCAATTAACTGTTTGCAGTA............. 25 1 2.00 0.00 0.00 2.00 .........................................................TAAGCTCAATTAACTGTTTGCAC............... 23 1 2.00 0.00 2.00 0.00 .........................................................TATGCTCAATTAACTGTTTGCAGT.............. 24 1 2.00 0.00 0.00 2.00 .......................TGTTTGAACTCGATCTTGG..................................................... 19 1 1.00 0.00 1.00 0.00 ...................GCAATGTTTGAACTCGATCTTGG..................................................... 23 1 1.00 0.00 1.00 0.00 .........................................................TAAGCTCAATTAACTGTTTGCACA.............. 24 1 1.00 0.00 0.00 1.00 ........................................................CTAAGCTCAATTAACTGTTTGCA................ 23 1 1.00 0.00 0.00 1.00 .........................................................TAAGCTCAATTAACTGTTCG.................. 20 1 1.00 0.00 0.00 1.00 .........................................................TAAGCTCAATTAACTGTTTGCAA............... 23 1 1.00 0.00 0.00 1.00 .........................................................TAAGCTCAATTAACTGTTTGCAGAA............. 25 1 1.00 1.00 0.00 0.00 ...............GTATGCAGTGTTTGAACT.............................................................. 18 1 1.00 0.00 1.00 0.00 ..........................................TTCTTGGACTCTTGATAAGCTCAA............................. 24 1 1.00 1.00 0.00 0.00 ........................................................CTAAGCTCAATTAACTGTTTGC................. 22 1 1.00 0.00 0.00 1.00 ................TAAGCAGTGTTTGAACTCGATCT........................................................ 23 1 1.00 0.00 1.00 0.00 ........................................................ATAAGCTCAATTAACTGTTTGCAGT.............. 25 1 1.00 1.00 0.00 0.00 .........................................................TAAGCTCAATTAACTGCTTGCA................ 22 1 1.00 0.00 0.00 1.00 ...............GTAAGCAGTGTTTGAACTCGAT.......................................................... 22 1 1.00 0.00 1.00 0.00 ...........................................TCTTGGACTCTTGATAAGCT................................ 20 1 1.00 1.00 0.00 0.00 .............................................TTGGACTCTTGATAAGCTCA.............................. 20 1 1.00 0.00 1.00 0.00 .........................................................TAAGCTCAATTACCTGCTTG.................. 20 1 1.00 0.00 0.00 1.00 .........................................................TAAGCTCAATTAACTGTCTGCA................ 22 1 1.00 1.00 0.00 0.00 ........................................................ATAAGCTCAATTAACTGT..................... 18 1 1.00 0.00 1.00 0.00 ............................................CTTGGACTCTTGATAAGCTC............................... 20 1 1.00 1.00 0.00 0.00 .........................................................GAAGCTCAATTAACTGTTTGCAGT.............. 24 1 1.00 0.00 0.00 1.00 .........................................................TAAGCTCACTTAACTGTTTGC................. 21 1 1.00 0.00 0.00 1.00 ..........................................TTCTTGGACTCTTGATAAGC................................. 20 1 1.00 0.00 1.00 0.00 .........................................................TAAGCTTAATTAACTGTTTGCA................ 22 1 1.00 0.00 0.00 1.00 .................AAGCAGTGTTTGAACTCGATCTTGGT.................................................... 26 1 1.00 1.00 0.00 0.00 .........................................................TACGCTCAATTAACTGTTTGCAGT.............. 24 1 1.00 1.00 0.00 0.00 .................AAGCAGTGTTTGAACTCGATCTTGG..................................................... 25 1 1.00 0.00 1.00 0.00 .........................................................TAAGCTTAATTAACTGTTTG.................. 20 1 1.00 0.00 0.00 1.00 ...............GCAAGCAGTGTTTGAACTTGATCTTG...................................................... 26 1 1.00 1.00 0.00 0.00 .....................................................TTGATAAGCTCAATTAACT....................... 19 1 1.00 0.00 1.00 0.00 ...........................................................AGCTCAATTAACTGTTTG.................. 18 1 1.00 0.00 0.00 1.00 .........................................................TAAGCTCAATTAACTCTTTG.................. 20 1 1.00 0.00 0.00 1.00 .........................................................TAAGCTCAATTAGCTGTTTGCA................ 22 1 1.00 0.00 0.00 1.00 ...............GTAAGCAGTTTTTGAACT.............................................................. 18 1 1.00 0.00 1.00 0.00 .........................................................TAAGCTCAATTAACTGCTTGCAGA.............. 24 1 1.00 1.00 0.00 0.00 ...........................................................AGCTCAATTAACTGTTTGCAGT.............. 22 1 1.00 0.00 0.00 1.00 .........................................................TAAGCTAAATTAACTGTTTGCA................ 22 1 1.00 0.00 0.00 1.00 .................................................ACTCTTGATAAGCTCAATTAACTGTT.................... 26 1 1.00 0.00 1.00 0.00
1	super_1:13721134-13721218 +	42.47	ACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATCTTGGTTCTTGGACTCTTGATAAGCTCAATTAACTGTTTGCAGCGGACGGGATCTTCT- TCGTCCCTGCTCAGTAAGTGGAATATGTGCATACAT----ATGTTTGCGCATCTTTATAAGCACTAAAATCCAATA-------TCCAGATCTCCTG Size Hit Count Total Norm V113 Male body V114 Embryo V115 Head
7	super_0:9771416-9771444 -	6.89	ACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATCTTGGTTCTTGGACTCTTGATAAGCTCAATTAACTGTTTGCAGC-GGACGGGATCTTCT AAGAACTAGT-------------------------------------------------------------TTTTGATAGCAAAACGAGA------ Size Hit Count Total Norm V113 Male body V114 Embryo V115 Head

droYak2 - 4 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
17	chrX:20343121-20343215 -	93.77	ACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATCTTGGTTCTTGGACTCTTGATAAGCTCAATTAACTGTTTGCAGCGGACGGGATCTTCT ACGAATCTGTTCAGTGTAAGCAGTGTTTGAACTCGATCTAGGATCTTGGACTCTTGATAAGCTCAATTAACTGTTTGCAGCGGACGGCATCTTCT Size Hit Count Total Norm V046 Embryo V052 Head V120 Male body V058 Head M026 Head .........................................................TAAGCTCAATTAACTGTTTGC................. 21 1 60.00 0.00 7.00 1.00 8.00 44.00 .........................................................TAAGCTCAATTAACTGTTTGCA................ 22 1 44.00 5.00 11.00 2.00 18.00 8.00 .........................................................TAAGCTCAATTAACTGTTTGCAG............... 23 1 22.00 9.00 1.00 2.00 5.00 5.00 ......................................TAGGATCTTGGACTCTTGA...................................... 19 1 22.00 0.00 2.00 0.00 1.00 19.00 .........................................................TAAGCTCAATTAACTGTTTGCAGT.............. 24 1 18.00 2.00 3.00 3.00 10.00 0.00 ...............GTAAGCAGTGTTTGAACTCGATC......................................................... 23 1 16.00 1.00 0.00 1.00 0.00 14.00 .........................................................TAAGCTCAATTAACTGTTTG.................. 20 1 16.00 0.00 6.00 0.00 9.00 1.00 ...............GTAAGCAGTGTTTGAACTCGATCTAG...................................................... 26 1 5.00 0.00 0.00 5.00 0.00 0.00 ...............GTAAGCAGTGTTTGAACTCGATCT........................................................ 24 1 4.00 0.00 0.00 1.00 0.00 3.00 .........................................................TAAGCTCAATTAACTGTTTGCAGA.............. 24 1 4.00 0.00 1.00 0.00 3.00 0.00 .........................................................TAAGCTCAATTAACTGTT.................... 18 1 4.00 0.00 0.00 0.00 0.00 4.00 ...........................................TCTTGGACTCTTGATAAGCTCA.............................. 22 1 4.00 0.00 0.00 4.00 0.00 0.00 ...........................................TCTTGGACTCTTGATAAGCTC............................... 21 1 3.00 0.00 0.00 2.00 0.00 1.00 .........................................................TAAGCTCAATTAACTGTTTGCAGTT............. 25 1 3.00 1.00 1.00 0.00 0.00 1.00 .........................................................TAAGCTCAATTAACTGTTT................... 19 1 2.00 0.00 0.00 0.00 0.00 2.00 .........................................GATCTTGGACTCTTGATAAGCT................................ 22 1 2.00 0.00 0.00 1.00 0.00 1.00 ......................................TAGGATCTTGGACTCTTGG...................................... 19 1 2.00 0.00 0.00 0.00 0.00 2.00 ...........................................TCTTGGACTCTTGATAAGCT................................ 20 1 2.00 0.00 0.00 1.00 0.00 1.00 ...............GTAAGCAGTGTTTGAACTC............................................................. 19 1 2.00 1.00 0.00 1.00 0.00 0.00 ...............GTAAGCAGTGTTTGAACTCGATCTAGG..................................................... 27 1 2.00 0.00 0.00 1.00 0.00 1.00 ...............GTAAGCAGTGTTTGAACTCGATCTA....................................................... 25 1 2.00 0.00 0.00 2.00 0.00 0.00 ............................................CTTGGACTCTTGATAAGCTCA.............................. 21 1 2.00 0.00 0.00 2.00 0.00 0.00 ...............GTAAGCAGTGTTTGAACTCGATCTAGGA.................................................... 28 1 2.00 0.00 0.00 2.00 0.00 0.00 ...............GTAAGCAGTGTTTGAACT.............................................................. 18 1 2.00 1.00 0.00 1.00 0.00 0.00 ......................................TAGGATCTTGGACTCTTGC...................................... 19 1 1.00 0.00 0.00 0.00 0.00 1.00 .........................................................TAAGCTCAATTAACTGTTTGCATT.............. 24 1 1.00 0.00 0.00 0.00 1.00 0.00 .........................................................TAAGCTCAATTCCCTGTTTG.................. 20 1 1.00 0.00 0.00 0.00 1.00 0.00 .....................................CTAGGATCTTGGACTCTTGATAAGCTCA.............................. 28 1 1.00 0.00 0.00 1.00 0.00 0.00 .........................................................TAAGCTCAATTAACTGTTTTCAG............... 23 1 1.00 0.00 1.00 0.00 0.00 0.00 ............................GAACTCGATCTAGGATCTTGGACTCTTGG...................................... 29 1 1.00 0.00 0.00 0.00 0.00 1.00 .........................................................TAAGATCAATTAACTGTTTGCAGT.............. 24 1 1.00 1.00 0.00 0.00 0.00 0.00 .........................................GATCTTGGACTCTTGATAAGCTCA.............................. 24 1 1.00 0.00 0.00 1.00 0.00 0.00 ......................................TAGGATCTTGGACTCTTGATAAGCT................................ 25 1 1.00 0.00 0.00 0.00 1.00 0.00 .........................................GATCTTGGACTCTGGATAAGCTC............................... 23 1 1.00 0.00 0.00 0.00 0.00 1.00 ....................................TCTAGGATCTTGGACTCT......................................... 18 1 1.00 0.00 0.00 0.00 0.00 1.00 ...............GTAAGCAGTGTTTGAACTCGA........................................................... 21 1 1.00 0.00 0.00 1.00 0.00 0.00 ........................................................ATAAGCTCAATTAACTGTTTGC................. 22 1 1.00 0.00 0.00 0.00 0.00 1.00 .........................................................TAAGCTCAATTAACTGTTCCC................. 21 1 1.00 0.00 0.00 0.00 1.00 0.00 .........................................................TAAGCTCAATTAACTGTTTGCAT............... 23 1 1.00 0.00 0.00 0.00 1.00 0.00 ..............................................................TCAATTAACTGTTTGCAGT.............. 19 1 1.00 1.00 0.00 0.00 0.00 0.00 .........................................................TAAGCTCGATTAACTGTTTGC................. 21 1 1.00 0.00 1.00 0.00 0.00 0.00 .........................................................TAAGCTCAATTGACTGTTTGC................. 21 1 1.00 0.00 0.00 0.00 0.00 1.00 .....................................CTAGGATCTTGGACTCTTGATAAGCT................................ 26 1 1.00 0.00 0.00 0.00 0.00 1.00 .............................................................CTCCATTAACTGTTTGCAGT.............. 20 1 1.00 0.00 0.00 1.00 0.00 0.00 ............................................CTTGGACTCTTGATAAGCT................................ 19 1 1.00 0.00 0.00 0.00 0.00 1.00 ...........................................................................TGCxGGGGACGGCATCTT.. 17 1 1.00 0.00 0.00 0.00 1.00 0.00 .............................................................CTCAATTAACTGTTTGCAGT.............. 20 1 1.00 0.00 0.00 1.00 0.00 0.00 ...............GTAAGCAGTGTTTGAACTCG............................................................ 20 1 1.00 0.00 0.00 1.00 0.00 0.00 ......................................TAGGATGTTGGACTCTTGA...................................... 19 1 1.00 0.00 0.00 0.00 1.00 0.00 .........................................................TACGCTCAATTAACTGTTTG.................. 20 1 1.00 0.00 0.00 0.00 1.00 0.00 .........................................................TAAGCTCAATTAACTGTTTGCC................ 22 1 1.00 0.00 0.00 0.00 1.00 0.00 ........................................................ATAAGCTCAATTAACTGTTTT.................. 21 1 1.00 0.00 0.00 0.00 1.00 0.00 ..........................................ATCTTGGACTCTTGATAAGCTC............................... 22 1 1.00 0.00 0.00 0.00 0.00 1.00 .........................................................TAAGCTCAAGTAACTGTTTTCA................ 22 1 1.00 0.00 0.00 0.00 1.00 0.00 ..........................................ATCTTGGACTCTTGATAAGCTCA.............................. 23 1 1.00 0.00 0.00 1.00 0.00 0.00 ...........................................TCTTGGACTCTTGATAAGCTCAATTAACT....................... 29 1 1.00 0.00 0.00 0.00 0.00 1.00 ...............GTAAGCCGTGTTTGAACT.............................................................. 18 1 1.00 0.00 0.00 0.00 1.00 0.00
14	chr2R:13047685-13047781 -	43.83	ACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATCTTGGTTCTTGGACTCTTGATAAGCTCAATTAACTGTTTGCAGCGGACGGGATCTTCT------------------ GCGTCCCTGCTCAGTAAGTGGAGTGTGTACA-------TATGTTACGAGCATCTTTATGAGCACCAA-AACTATATCCA--------GATCTCCTGCCCACCTTCGATGTGCG Size Hit Count Total Norm V046 Embryo V052 Head V120 Male body V058 Head M026 Head
6	chr3L:16331566-16331625 +	21.51	ACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATCTTGGTTCTTGGACTCTTGATAAGCTCAATTAACTGT----TTGCAGCGG-ACGGGATCTTCT GTGCCTCCGGCTGACGGAAGCGCG----------------------------------GGCTTCAAGGACCTAGTTTTTGACAGCAAAACGAGA------ Size Hit Count Total Norm V046 Embryo V052 Head V120 Male body V058 Head M026 Head
5	chr3L:16268075-16268115 +	11.14	ACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATCTTGGTTCTTGGACTCTTGATAAGCTCAATTAACTGTTTGCAGCGGACGGGATCTTCT ATAATGATGATCAAGGTAAT--GGGGAAGATGAG-----------------------------------------------GATCGGGAT----- Size Hit Count Total Norm V046 Embryo V052 Head V120 Male body V058 Head M026 Head .................GAT--GTGGAAGATGAG-----------------------------------------------GAT........... 18 1 1.00 0.00 0.00 1.00 0.00 0.00

droEre2 - 2 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
12	scaffold_4690:17696754-17696848 -	93.77	ACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATCTTGGTTCTTGGACTCTTGATAAGCTCAATTAACTGTTTGCAGCGGACGGGATCTTCT ACGAATCTGTTCAGTGTAAGCAGTGTTTGAACTCGATCTGGGATCTTGGACTCTTGATAAGCTCAATTAACTGTTTGCAGCGGACGGCATCTTCT Size Hit Count Total Norm V040 Embryo V060 Head V047 Embryo V108 Head .........................................................TAAGCTCAATTAACTGTTTGCA................ 22 1 265.00 0.00 55.00 0.00 210.00 .........................................................TAAGCTCAATTAACTGTTTGC................. 21 1 212.00 2.00 16.00 0.00 194.00 .........................................................TAAGCTCAATTAACTGTTTG.................. 20 1 136.00 0.00 13.00 0.00 123.00 .........................................................TAAGCTCAATTAACTGTTTGCAG............... 23 1 129.00 6.00 6.00 0.00 117.00 .........................................................TAAGCTCAATTAACTGTTTGCAGA.............. 24 1 19.00 0.00 4.00 0.00 15.00 ...............GTAAGCAGTGTTTGAACTCGATC......................................................... 23 1 8.00 0.00 2.00 0.00 6.00 .........................................................TAAGCTCAATTAACTGTTTGCAGTT............. 25 1 7.00 0.00 0.00 0.00 7.00 .........................................................TAAGCTCAATTAACTGTTTGCAGT.............. 24 1 7.00 0.00 4.00 0.00 3.00 .........................................................TAAGCTCAATTAACTGTTTGCAA............... 23 1 4.00 0.00 0.00 0.00 4.00 .........................................................TAATCTCAATTAACTGTTTGCA................ 22 1 4.00 0.00 0.00 0.00 4.00 ...............GTAAGCAGTGTTTGAACT.............................................................. 18 1 4.00 0.00 0.00 0.00 4.00 .........................................................TAAGCTAAATTAACTGTTTGCA................ 22 1 4.00 0.00 0.00 0.00 4.00 .........................................................TAAGCTCAATTAACTGTTTGCAGTA............. 25 1 3.00 0.00 0.00 0.00 3.00 .........................................................TAAGCTCAATTAACTGTCTGC................. 21 1 3.00 0.00 0.00 0.00 3.00 ................TAAGCAGTGTTTGAACTCGATC......................................................... 22 1 3.00 0.00 1.00 0.00 2.00 ...............GTAAGCAGTGTTTGAACTCG............................................................ 20 1 3.00 0.00 0.00 0.00 3.00 .........................................................TAAGCTCAATTAACTGTTTTCA................ 22 1 3.00 0.00 0.00 0.00 3.00 ...AATCTGxTCAGTGTAAGGA......................................................................... 18 1 2.00 2.00 0.00 0.00 0.00 ...............GTAAGCAGTGTTTGAACTCGATCTGG...................................................... 26 1 2.00 0.00 0.00 0.00 2.00 .........................................................TAATCTCAATTAACTGTTTG.................. 20 1 2.00 0.00 0.00 0.00 2.00 .........................................................TAAGCTCAATTAACTGTTTTC................. 21 1 2.00 0.00 0.00 0.00 2.00 ...............GTAAGCAGTGTTTGAACTCGA........................................................... 21 1 2.00 0.00 0.00 0.00 2.00 .........................................................TAAGCTCAATTAACTGTTTGCAT............... 23 1 2.00 0.00 0.00 0.00 2.00 .........................................................TAAGATCAATTAACTGTTTGCA................ 22 1 2.00 0.00 0.00 0.00 2.00 .........................................................TAAGCTCAATTAACTTTTTG.................. 20 1 2.00 0.00 0.00 0.00 2.00 .........................................................CAAGCTCAATTAACTGTTTGC................. 21 1 2.00 0.00 0.00 0.00 2.00 .........................................................TAAGCTCAATTAACTGTT.................... 18 1 2.00 0.00 0.00 0.00 2.00 .........................................................TAACCTCAATTAACTGTTTGCAG............... 23 1 2.00 0.00 0.00 0.00 2.00 ..........................................................AAGCTCAATTAACTGTTTGC................. 20 1 1.00 0.00 0.00 0.00 1.00 .................AACCAGTGTTTCAACTCGATCT........................................................ 22 1 1.00 1.00 0.00 0.00 0.00 .........................................................TAAGCTCAATTAACTGTTTGCATT.............. 24 1 1.00 0.00 1.00 0.00 0.00 .........................................................TAATCTCAATTAACTGTTTGCAG............... 23 1 1.00 0.00 0.00 0.00 1.00 .........................................................TAAGCTCAATTAAATGTTTGA................. 21 1 1.00 0.00 0.00 0.00 1.00 .........................................................TAAGCTAAATTAACTGTTTGC................. 21 1 1.00 0.00 0.00 0.00 1.00 .........................................................TAAGCTCAATTAACTGTTT................... 19 1 1.00 0.00 0.00 0.00 1.00 ........................................................CTAAGCTCAATTAACTGTTTGCA................ 23 1 1.00 0.00 1.00 0.00 0.00 ........................................................CTAAGCTCAATTAACTGTTTGCAG............... 24 1 1.00 0.00 0.00 0.00 1.00 .........................................................TAAGCTCAATTAACTGATTGCA................ 22 1 1.00 0.00 1.00 0.00 0.00 .........................................................TAAGCTCAATTAAGTGTTTGCAG............... 23 1 1.00 0.00 0.00 0.00 1.00 .........................................................GAAGCTCAATTAACTGTTTG.................. 20 1 1.00 0.00 0.00 0.00 1.00 .........................................................TAAGCTCAGTTAACTGTTTGC................. 21 1 1.00 0.00 0.00 0.00 1.00 .........................................................TAAGCTCAATTAAATGTTTGC................. 21 1 1.00 0.00 0.00 0.00 1.00 .........................................................TAAGCTCAATTAACTGTTTGCG................ 22 1 1.00 0.00 0.00 0.00 1.00 .........................................................TAAGCTCAATTGACTGTTTGCA................ 22 1 1.00 0.00 0.00 0.00 1.00 ........................................................ATAAGCTCAATTAACTGTTTGC................. 22 1 1.00 0.00 0.00 0.00 1.00 .........................................................TAAGCTCAATTAACTTTTTGCAGA.............. 24 1 1.00 0.00 0.00 0.00 1.00 .........................................................TAAGCTCAATTAACTGTTTACA................ 22 1 1.00 0.00 0.00 0.00 1.00 .........................................................TAAGCTCCATTAACTGTTTGCAG............... 23 1 1.00 0.00 0.00 0.00 1.00 .........................................................TACGCTCAATTAACTGTTTGCA................ 22 1 1.00 0.00 0.00 0.00 1.00 .........................................................TAAGCTCGATTAACTGTTTGC................. 21 1 1.00 0.00 0.00 0.00 1.00 .........................................................TAAGCTCAATTAACTxTTTGCA................ 21 1 1.00 0.00 0.00 0.00 1.00 ...............GTAAGCAGTGTTTGAACTCGATCTG....................................................... 25 1 1.00 0.00 0.00 0.00 1.00 .........................................................TAAGCTCCATTAACTGTTTGCAGT.............. 24 1 1.00 1.00 0.00 0.00 0.00 .........................................................TAAGCTCAATTAAATGTTTG.................. 20 1 1.00 0.00 0.00 0.00 1.00 ...............GTAAGCAGTGTTTGAACTCGAT.......................................................... 22 1 1.00 1.00 0.00 0.00 0.00 .............................................TTGGACTCTTGATAAGCTCA.............................. 20 1 1.00 0.00 0.00 0.00 1.00 .........................................................CAAGCTCAATTAACTGTTTGCA................ 22 1 1.00 0.00 0.00 0.00 1.00 .........................................................TAAGCTCAATTAACTGTTG................... 19 1 1.00 0.00 0.00 0.00 1.00 ...............GTAAGCAGTGTTTGAACTC............................................................. 19 1 1.00 0.00 0.00 0.00 1.00 .......TGTTCAATGTAAGTAGTG...................................................................... 18 1 1.00 0.00 0.00 0.00 1.00 ...............GTAAGCAGTGTTTGAACTCGATCTGGG..................................................... 27 1 1.00 0.00 1.00 0.00 0.00 .........................................................TAAGCTCAATTAACTTTTTGC................. 21 1 1.00 0.00 0.00 0.00 1.00 ........................................................ATAAGCTCAATTAACTGTTTGCA................ 23 1 1.00 0.00 1.00 0.00 0.00 .........................................................TAAGTTCAATTAACTGTTTG.................. 20 1 1.00 0.00 0.00 0.00 1.00 .........................................................TAAGCTCAATTAACTGTTTGCAAA.............. 24 1 1.00 0.00 1.00 0.00 0.00 ...............GTAAGCAGTGTTTGAACTCGATCTTTG..................................................... 27 1 1.00 1.00 0.00 0.00 0.00 ...........................................TCTTGGACTCTTGATAAGCTCA.............................. 22 1 1.00 1.00 0.00 0.00 0.00 .........................................................TAAGCTCAATTAACTTTTTGCA................ 22 1 1.00 0.00 0.00 0.00 1.00 .........................................................TAAGCTCAATTAACTGTTTGCAC............... 23 1 1.00 0.00 0.00 0.00 1.00 ....................CAGTGTTTGAACTCGATCTGGG..................................................... 22 1 1.00 0.00 0.00 0.00 1.00 .........................................................TAAGCTCAATTAACTGTTTGGA................ 22 1 1.00 0.00 0.00 0.00 1.00 .........................................................TAAGCTTAATTAACTGTTTGCAG............... 23 1 1.00 0.00 0.00 0.00 1.00 ...............GTAAGTAGTGTTTGAACTCGATC......................................................... 23 1 1.00 0.00 0.00 0.00 1.00 .........................................................TGAGCTCAATTAACTGTTTG.................. 20 1 1.00 0.00 0.00 0.00 1.00 .......................................................GATAAGCTCAATTAACTGTTTGCAGT.............. 26 1 1.00 0.00 0.00 0.00 1.00 .........................................................TAAGTTCAATTAACTGTTTGCAG............... 23 1 1.00 0.00 0.00 0.00 1.00 .........................................................TAAGCTAAATTAACTGTTTGCAA............... 23 1 1.00 0.00 0.00 0.00 1.00 .................................CGATCTGGGATCTTGGACTCTTGATA.................................... 26 1 1.00 0.00 0.00 0.00 1.00 .........................................................TAACCTCAATTAACTGTTTGCA................ 22 1 1.00 0.00 0.00 0.00 1.00 .........................................................TAAGCTCAATTAACTGTTTCCA................ 22 1 1.00 0.00 0.00 0.00 1.00 .........................................................TAAGCTCAATTAGCTGTTTGCA................ 22 1 1.00 0.00 0.00 0.00 1.00 .........................................................TAAGCTTAATTAACTGTTTGC................. 21 1 1.00 0.00 0.00 0.00 1.00 .........................................................TAGGCTCAATTAACTGTTTGCA................ 22 1 1.00 0.00 0.00 0.00 1.00 .........................................................TAAGATCAATTAAATGTTTGC................. 21 1 1.00 0.00 0.00 0.00 1.00 .........................................................TAAGCTCAATTAACxxTTTGCAG............... 21 1 1.00 0.00 0.00 0.00 1.00 .........................................................TACGCTAAATTAACTGTTTGC................. 21 1 1.00 0.00 0.00 0.00 1.00 ...........................................................AGCTCAATTAACTGTTTGCAGT.............. 22 1 1.00 0.00 1.00 0.00 0.00 .........................................................TAAGCTCAATTAGCTGTTTG.................. 20 1 1.00 0.00 0.00 0.00 1.00 .........................................................TAAGCTCAATTAACTTTTTGCAG............... 23 1 1.00 0.00 0.00 0.00 1.00 .........................................................TAAGCTCAATTAACTGxTTGCAG............... 22 1 1.00 0.00 0.00 0.00 1.00 .........................................................TAAGCGCAATTAACTGTTTGCA................ 22 1 1.00 0.00 0.00 0.00 1.00
5	scaffold_4784:16073291-16073320 +	17.44	ACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATCTTGGTTCTTGGACTCTTGATAAGCTCAATTAACTGTTTGCAGCGGACGGGATCTTCT ATGAA-------AATGTGAGCAGCTGTGGAAAGCAAT---------------------------------------------------------- Size Hit Count Total Norm V040 Embryo V060 Head V047 Embryo V108 Head ....C-------AATGTGAGCAGCTGTGC.................................................................. 18 1 2.00 0.00 0.00 0.00 2.00 ............AATGTGAGCAGCTGTGCC................................................................. 18 1 1.00 0.00 0.00 0.00 1.00 ..GTC-------AATGTGAGCAGCTGT.................................................................... 18 1 1.00 1.00 0.00 0.00 0.00

droFic1 - 3 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
16	scf7180000454077:618950-619043 -	89.56	ACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATCTTGGTTCTTGGACTCTTGATAAGCTCAATTAACTGTTTGCAGCGGACGGGATCTTCT ACGAATCCGTACAGTGTAAGCAGTGCTTGAACTCGATCTTGGATCTTGGACCC-CGATAAGCTCAATTAACTGTTTGCAGCCGATGGCATCTTCT Size Hit Count Total Norm
3	scf7180000453851:887176-887260 +	57.05	ACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATCTTGGTTCTTGGACTCTTGATAAGCTCAATTAACTGTTTGCAGCGGACGGGATCTTCT A----------CAGCGTAAGCACGGTTTGATCTGGACCTCGTACCTTTAACT-TGAATAAGCTCAATTTACTGATTTTAGCCCACGATATCTTTG Size Hit Count Total Norm
17	scf7180000454107:1312324-1312391 -	31.56	ACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATCTTGGTTCTTGGACTCTTGATAAGCTCAATTAACTGTTTGCAGCGGACGGGATCTTCT CGGAATCGCCTCAGGATAAAGAAGGTCTGGATTTAGTCTT--------------TGATAAAGAA----------AC---AAAGGCAACACGATCT Size Hit Count Total Norm

droEug1 - 7 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
3	scf7180000408193:314924-315018 +	91.71	ACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATCTTGGTTCTTGGACTCTTGATAAGCTCAATTAACTGTTTGCAGCGGACGGGATCTTCT ACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATCTTGGATCTTGGACTCCTGATAAGCTCAATTAACTGTTTGCAGCCGACGGCATATTTT Size Hit Count Total Norm
18	scf7180000409672:2479278-2479366 -	62.46	ACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATCTTGGTTCTTGGACTCTTGATAAGCTCAATTAACTGTTTGCAGCGGACGGGATCTTCT ACAAGTCCGTTGAGTGTAAGTAGTATT--AAATCAACTTAAA----TGGTCTCCTGATAATCCCAATTAAATACTTGCAGCCTTCGGACTCTTAT Size Hit Count Total Norm
17	scf7180000409474:1822180-1822280 -	42.69	ACGA-ATCTGTACAGTGTAAGCAGTGTTTGAACTCGATCTTGGTTCTTGGACTCTTGATAAGCTCAATTAACTGTTTGCAGCGGACGGGATCTT--------------------------CT ATGGCATCTCTGCTTGGTAAGCAGTATTA----TCTATTT------------TTTTAATAAAC--AAGGAA-TTTATACAACTCAT--GATCTCCAGATTTACTGCCCTCCTTTGAAGTCCG Size Hit Count Total Norm
13	scf7180000409466:4819333-4819378 -	28.26	ACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATCTTGGTTCTTGGACTCTTGATAAGCTCAAT--------TAACTGTTTGCAGCGGACGGGATCTTCT ------------------------------------------------------TGATAAGCTAAGTAAATGCAATAACT-TTTGCAACTTACCAGAAC--CC Size Hit Count Total Norm
7	scf7180000409471:1836326-1836381 +	20.28	ACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATCTTGGTTCTTGGACTCTTGATAAGCTCAATTAACTGTTTGCAGCGGACGGGATCTTCT CGGATATTAAAT------------------------ACTTGGTTTTCGATGACAAGGTGAGG---------------GAAACGAGAAAATCATCT Size Hit Count Total Norm
15	scf7180000409471:1766103-1766111 -	6.45	ACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATCTTGGTTCTTGGACTCTTGATAAGCTCAATTAACTGTTTGCAGCGGACGGGATCTTCT ATCAATTTG-------------------------------------------------------------------------------------- Size Hit Count Total Norm	None	None
10	scf7180000409804:2114801-2114805 +	3.23	ACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATCTTGGTTCTTGGACTCTTGATAAGCTCAATTAACTGTTTGCAGCGGACGGGATCTTCT CC------------------------------------------------------------------------------------------TCA Size Hit Count Total Norm	None	None

droBia1 - 4 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
3	scf7180000302187:364133-364220 +	83.67	ACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATCTTGGTTCTTGGACTCTTGATAAGCTCAATTAACTGTTTGCAGCGGACGGGATCTTCT ACGAATCTGTGCAGTGTAAGCAGTGTTTGAACTCGATCT-------TGGACTCCTGATAAGCTCAATTAACTGTTTGCAGCCGACGGCATCTTCT Size Hit Count Total Norm
1	scf7180000301506:2068358-2068437 +	44.37	ACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATCTTGGTTCTTGGACTCTTGATAAGCTCAATTAACTGTTTGCAGCGGACGGGATCTTCT TCAAAACTGTTATGTGTAAGCAGGGTCTTGGTTC---CGTAGCTTTTGTACATTCACTATGATTAGATATCCCATTGCAG------------TCT Size Hit Count Total Norm
11	scf7180000302193:1032090-1032151 -	20.35	ACGAATCTGTACAGTGTAAGCAGTGTT----TGAAC-TCGATCTTGGTTCTTGGACTCTTGATAAGCTCAATTAACTGTTTGCAGCGGACGGGATCTTCT AGCCGCCGGCTGAAGGA-AGGGGTGGCTTCGAGAACCTGGTGTTTGATGCCAAAACGCGGGAG------------------------------------- Size Hit Count Total Norm
17	scf7180000302428:5650206-5650209 -	4.3	ACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATCTTGGTTCTTGGACTCTTGATAAGCTCAATTAACTGTTTGCAGCGGACGGGATCTTCT ACGA------------------------------------------------------------------------------------------- Size Hit Count Total Norm	None	None

droTak1 - 6 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
4	scf7180000415158:280534-280628 +	87.59	ACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATCTTGGTTCTTGGACTCTTGATAAGCTCAATTAACTGTTTGCAGCGGACGGGATCTTCT ACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATCCCGGATCCTGAACTCCCGATAAGCTCAATTAACTGTTTGCAGCCGATGGCATCTTCT Size Hit Count Total Norm
14	scf7180000414326:18070-18158 -	56.41	ACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATCTTGGTTCTTGGACTCTTGATAAGCTCAATTAACTGTTTGCAGCGGACGGGATCTTCT ACAAATCTGTAGAGTGTAAGTTGGGATTGGTTCCGTGAT------TTGGCCTTCCACTATGATCCATTTCCTTCTTCCAGCCCTCGGAATTTTCT Size Hit Count Total Norm
7	scf7180000415235:5840-5939 +	41.53	ACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATCTTG-GTTCTTGGAC------TCTTGATA-AGCTCAATTAACTGTTTGCAGCGGACGGGATCTTCT ATGAGGCTGCGA---ATAAGTGCTGTGGAAATTTAGTGAGACACTGGTGGGCGATGATGATCAAGAAGACTCTTTCTCTTTATGACAGCAAGGTAATTATTTT Size Hit Count Total Norm
16	scf7180000415409:136253-136296 -	28.0	ACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATCTTGGTTCTTGGACTCTTGATAAGCTCAATTAACTGTTTGCAGCGGACGGGATCTTCT TGTAACTT----------------------------------------------AAATAAGTGCAAT-AACT-TTTGCAACCTACCAGAACC--- Size Hit Count Total Norm
19	scf7180000415409:520862-520928 -	25.78	ACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATCTTGGTTCTTGGACTCTTGATAAGCTCAATTAACTGTTTGCAGCGGACGGGATCTTCT AAGAGGTGGTTCAGGGTAGACAAAGCCTGGGTTTCA----------------------AAGATATAGTATTTGAAAACAAAACAAGGGA------ Size Hit Count Total Norm
2	scf7180000412369:74989-74992 +	3.23	ACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATCTTGGTTCTTGGACTCTTGATAAGCTCAATTAACTGTTTGCAGCGGACGGGATCTTCT -------------------------------------------------------------------------------------------TTCC Size Hit Count Total Norm	None	None

droEle1 - 2 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	scf7180000490214:749279-749373 +	89.65	ACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATCTTGGTTCTTGGACTCTTGATAAGCTCAATTAACTGTTTGCAGCGGACGGGATCTTCT ACGAGTCCGTACAGTGTAAGCAGTGTTTGAACTCGATCTTGGATCTTGGACTCCCGATAAGCTCAATTAACTGTTTGCAGCCGAAGGCATCTTCT Size Hit Count Total Norm
10	scf7180000490993:649875-649933 -	19.73	ACGAATCTGTACAGTGTAAGCAGTGTTTGAACT---CGATCTTGGTTCTTGGACTCTTGATAAGCTCAATTAACTGTTTGCAGCG--GACGGGATCTTCT TGG------CTCAGGCTGAAAAAAGTGTGGGCTTCAAGGACTTGGTGTTTG-----------------------------ATACAAGAACGAG------- Size Hit Count Total Norm

droRho1 - 2 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
9	scf7180000780082:45658-45752 +	88.62	ACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATCTTGGTTCTTGGACTCTTGATAAGCTCAATTAACTGTTTGCAGCGGACGGGATCTTCT GCGAATCCGTACAGTGTAAGCAGTGTTTGAACTCGATCTTGGATCTTAGATTCCCGATAAGCTCAATTAACTGTTTGCAGCCGACGGCATCTTCT Size Hit Count Total Norm
12	scf7180000779490:33883-33941 -	23.37	ACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATCTTGGTTCTTGGACTCTTGATAAGCTCAATTAACTGTTTGCAGCGGACGGGATCTTCT AAA-----GTACGGCG---------TTCGG----GGACTTGATATTTG-------------ATCAAAAAAC-----AAAGGAAAAAGGAACTTTT Size Hit Count Total Norm

droKik1 - 3 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
14	scf7180000302395:538362-538458 -	81.05	ACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATCTTGGTTC--TTGGACTCTTGATAAGCTCAATTAACTGTTTGCAGCGGACGGGATCTTCT ACGAATCAGTGCAGTGTAAGCAGTGCTTGAACTCGATCTCGTATTAATTGGTCTTCTGATAAGCTCAATTAACTGTTTGCAGCCGATGGCATCTTCT Size Hit Count Total Norm
6	scf7180000302228:72747-72826 -	27.9	ACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATCTTGGTTCTTGGACTCTTGATAAGC------------TCA-------------ATTAACTGTTTGCAGCGGACGGGATCTTCT G--------------GTGAGTAGTTTTTGGGTTT-----------TCCGAGTATCCTTAAGTCGTACCGTGGGCTCCCATAGATCTCCTGCCCAGC--TTTGAGGTG------------- Size Hit Count Total Norm
2	scf7180000302351:157980-158025 +	13.02	ACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATCTTGGTTCTTGGACTCTTGATAAGCTCAATTAACTGTTTGCAGCGGACGGGATCTTCT ACGCATCTCCTGACTTTCA---------------GAGCCTGGTCTTTGATACCAGAACGAG---------------------------------- Size Hit Count Total Norm

droAna3 - 3 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
2	scaffold_13334:1054378-1054469 +	84.35	ACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATCTTGGTTCTTGGA----CTCTTGATAAGCTCAATTAACTGTTTGCAGCGGACGGGATCTTCT ACGAATCCGTACAGTGTAAGCAGTGTTTGAACTCGATCT-------TGGAATAGCTCCCGATAAGCTCAATTAACTGTTTGCAGCCGATGGCATCTTCT Size Hit Count Total Norm V105 Male body V106 Head V055 Unknown V039 Embryo .............................................................TAAGCTCAATTAACTGTTTG.................. 20 1 136.00 5.00 105.00 26.00 0.00 .............................................................TAAGCTCAATTAACTGTTTGC................. 21 1 131.00 4.00 107.00 19.00 1.00 .............................................................TAAGCTCAATTAACTGTTTGCAG............... 23 1 85.00 2.00 65.00 7.00 11.00 .............................................................TAAGCTCAATTAACTGTTTGCA................ 22 1 79.00 8.00 43.00 26.00 2.00 .............................................................TAAGCTCAATTAACTGTTTGCAGT.............. 24 1 21.00 8.00 5.00 8.00 0.00 ...............GTAAGCAGTGTTTGAACTCGATC............................................................. 23 1 7.00 0.00 7.00 0.00 0.00 .............................................................TAAGCTCAATTAACTGTTTGCAGTT............. 25 1 6.00 1.00 3.00 2.00 0.00 ...............GTAAGCAGTGTTTGAACTC................................................................. 19 1 3.00 0.00 2.00 0.00 1.00 .............................................................TAATCTCAATTAACTGTTTGC................. 21 1 3.00 0.00 3.00 0.00 0.00 ...............GTAAGCAGTGTTTGAACTCG................................................................ 20 1 3.00 0.00 3.00 0.00 0.00 .............................................................TAATCTCAATTAACTGTTTG.................. 20 1 3.00 0.00 3.00 0.00 0.00 ............................................................ATAAGCTCAATTAACTGTTTG.................. 21 1 3.00 0.00 3.00 0.00 0.00 .............................................................TAAGTTCAATTAACTGTTTGC................. 21 1 2.00 0.00 2.00 0.00 0.00 ...............GTAAGCAGTGTTTGAACTCGATCT-------TGG.................................................. 27 1 2.00 1.00 1.00 0.00 0.00 .............................................................TAAGCTCAATTAACTGTTTGCAGA.............. 24 1 2.00 1.00 0.00 1.00 0.00 .............................................................TAAGCTCAATTAACTGTTTGA................. 21 1 2.00 0.00 1.00 1.00 0.00 ................GTAGCAGTGTTTGAACTCGATC............................................................. 22 1 2.00 0.00 2.00 0.00 0.00 .............................................................TAAGATCAATTAACTGTTTG.................. 20 1 2.00 0.00 1.00 1.00 0.00 .............................................................TAAGCTAAATTAACTGTTTG.................. 20 1 2.00 0.00 2.00 0.00 0.00 ...............GTAAGCAGTGTTTGAACT.................................................................. 18 1 2.00 0.00 2.00 0.00 0.00 .............................................................TAAGCTCAATTAACTGTTTTC................. 21 1 1.00 0.00 1.00 0.00 0.00 .............................................................TAAGCTCAATTAATTGTTTGCT................ 22 1 1.00 0.00 0.00 1.00 0.00 .............................................................CACGCTCAATTAACTGTTTGCAG............... 23 1 1.00 0.00 1.00 0.00 0.00 ..................................GATCT-------TGGAATAGCTCCCGATAA................................... 23 1 1.00 1.00 0.00 0.00 0.00 .............................................................TAGGCTCAATTAACTGTTTGC................. 21 1 1.00 0.00 1.00 0.00 0.00 .............................................................TAAGCTCAATTAACTGTTTGCAA............... 23 1 1.00 0.00 1.00 0.00 0.00 ............................GAACTCGAGCG-------TGGAATAGCT........................................... 21 1 1.00 1.00 0.00 0.00 0.00 .............................................................TAAGATCAATTAACTATTTGCA................ 22 1 1.00 0.00 0.00 1.00 0.00 ...............GTAAGCAGTGTTTGAACTCGATCT-------..................................................... 24 1 1.00 0.00 1.00 0.00 0.00 .............................................................TAAGCTCAATTAACCGTTTGCAG............... 23 1 1.00 0.00 1.00 0.00 0.00 .............................................................TAAGCTCAATTAACCGTTTGC................. 21 1 1.00 0.00 1.00 0.00 0.00 .............................................................TAAGCTCAATTAACTGTGTT.................. 20 1 1.00 0.00 0.00 1.00 0.00 .............................................................TAAGATCAATTAACTGTTTGCT................ 22 1 1.00 0.00 0.00 1.00 0.00 .............................................................TAAGCCCAATTAACTGTTTGC................. 21 1 1.00 0.00 1.00 0.00 0.00 ............................................................ATAAGCTCAATTAACTGTTTGCAG............... 24 1 1.00 0.00 1.00 0.00 0.00 .............................................................TAAGCACAATTAACTGTCTG.................. 20 1 1.00 0.00 0.00 1.00 0.00 ............................................................ATAAGCTCACTCAACTGTTTG.................. 21 1 1.00 0.00 0.00 1.00 0.00 ................................................GAATAGCTCCCGATAATCT................................ 19 1 1.00 0.00 0.00 0.00 1.00 .............................................................TAAGATCAATTAACTGTTTGC................. 21 1 1.00 0.00 1.00 0.00 0.00 .............................................................TAAGCTCAATTAACTGTCTGCAT............... 23 1 1.00 0.00 1.00 0.00 0.00 ...............GTAAGCAGTGTTTGAACTAGA............................................................... 21 1 1.00 1.00 0.00 0.00 0.00 ...............................CTCGATCT-------TGGAATAGCTCC......................................... 20 1 1.00 1.00 0.00 0.00 0.00 ......................................T-------TGGAATAGCTCCCGATAAGCT................................ 22 1 1.00 0.00 1.00 0.00 0.00 .............................................................TAAGCTCAATTAACTTTTTGCA................ 22 1 1.00 0.00 1.00 0.00 0.00 .............................................................TAAGCTCGATTAACTGTTTGCAGT.............. 24 1 1.00 0.00 0.00 1.00 0.00 .............................................................TAAGCTCAATTCACTGTTTG.................. 20 1 1.00 0.00 0.00 1.00 0.00 .............................................................TAATCTCAATTAACTGTTTT.................. 20 2 0.50 0.00 0.50 0.00 0.00 .............................................................TAAGCTCATTTAACTTTTTGCA................ 22 1 1.00 0.00 1.00 0.00 0.00 ............................................................ATAATCTCAATTAACTGTTTGC................. 22 1 1.00 0.00 1.00 0.00 0.00 ...............GTAAGCAGTGTTTGAACTCGAT.............................................................. 22 1 1.00 0.00 0.00 1.00 0.00 .............................................................TAAGATCAATTAACTGATTGCA................ 22 1 1.00 0.00 0.00 1.00 0.00 .............................................................TAAGCTCAATTAACTCCTTGCA................ 22 1 1.00 0.00 0.00 1.00 0.00 .............................................................TAAGCTCAATTAATTGTTTGCAG............... 23 1 1.00 0.00 1.00 0.00 0.00 .............................................................TAAGCTCAATTAACTGTTAGC................. 21 1 1.00 0.00 0.00 1.00 0.00 .............................................................TAAGCTCAATTAACTGGTTG.................. 20 1 1.00 0.00 0.00 1.00 0.00 .............................................................TAAGCTCTATTAACTGTGTG.................. 20 1 1.00 0.00 0.00 1.00 0.00 ..............................................................AAGCTCAATTAACTGTTTGCA................ 21 1 1.00 0.00 0.00 1.00 0.00 .............................................................TAAGCTCAGTTAACTGTTTGCA................ 22 1 1.00 0.00 1.00 0.00 0.00 .............................................................TAGGCTCAATTAACTGTTTG.................. 20 1 1.00 0.00 1.00 0.00 0.00 .............................................................TAAGCTCACTTACCTGTTTGCA................ 22 1 1.00 0.00 0.00 1.00 0.00 .............................................................TAAGCTCAATTAACxGTTTGCAGT.............. 23 1 1.00 0.00 1.00 0.00 0.00 .............................................................TAAGCTCATTTAACTGTTTT.................. 20 1 1.00 0.00 0.00 1.00 0.00 .............................................................TAAGCTCAATTAACTGTTTT.................. 20 1 1.00 1.00 0.00 0.00 0.00 .............................................................TAAGCTCAATTAACTGATTG.................. 20 1 1.00 0.00 1.00 0.00 0.00 .............................................................TAAGCTCAATTCACTGTTTGC................. 21 1 1.00 0.00 1.00 0.00 0.00 .............................................................TAAGCTCAATTGACTGTTTGC................. 21 1 1.00 1.00 0.00 0.00 0.00 .............................................................TAAGCTCAATTAACTGTTT................... 19 1 1.00 0.00 0.00 1.00 0.00 .............................................................TAAGCGCAATTAACTGTTTGCAG............... 23 1 1.00 0.00 0.00 1.00 0.00 .............................................................TAAGCTAAATTAACTGTTTGC................. 21 1 1.00 0.00 1.00 0.00 0.00 .............................................................GAAGCTCAATTAACTGTTTGC................. 21 1 1.00 0.00 0.00 1.00 0.00 ...............GTAAGCAGCGTTTGAACT.................................................................. 18 1 1.00 0.00 1.00 0.00 0.00 .............................................................TAAGCTCAATTAACTGTTTTCAG............... 23 1 1.00 0.00 0.00 0.00 1.00 ......................................T-------TGGAATAGCTCCCGATAAGC................................. 21 1 1.00 0.00 0.00 1.00 0.00 .............................................................TAAGCTCAATTAACTGCTTG.................. 20 1 1.00 0.00 1.00 0.00 0.00 .............................................................TAAGCTCAATTAAGTGTTTGCAG............... 23 1 1.00 0.00 0.00 0.00 1.00 ...............GTAAGCAGTGTATGAACTC................................................................. 19 1 1.00 1.00 0.00 0.00 0.00 .............................................................TAAGCTCATTTAACTGTTTGCA................ 22 1 1.00 0.00 1.00 0.00 0.00
11	scaffold_13266:3128258-3128336 -	33.98	ACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATCTTGGTTCTTGGACTCTTGATAAGCTCAATTAACTGTTTGCAGCGGACGGGATCTTCT AAGTATCTA--------AAATAGTGCTTTCTAGAGATCTGATGTCCCATGTCCATGC--AGATTTGCTGCCATCGTTCGATGTGCGGGA------ Size Hit Count Total Norm V105 Male body V106 Head V055 Unknown V039 Embryo .................................................................GCTGCCATCGxTCGATGAGCGG........ 21 1 1.00 1.00 0.00 0.00 0.00
15	scaffold_13337:4813548-4813560 -	0.95	ACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATCTTGGTTCTTGGACTCTTGATAAGCTCAATTAACTGTTTGCAGCGGACGGGATCTTCT TCG-----------------------------------------------------------------------------------TGATCGCCG Size Hit Count Total Norm V105 Male body V106 Head V055 Unknown V039 Embryo	None	None

droBip1 - 3 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
5	scf7180000396733:702536-702627 +	85.39	ACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATCTTGGTTCTTGGA----CTCTTGATAAGCTCAATTAACTGTTTGCAGCGGACGGGATCTTCT ACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATCT-------TGGAATAGCTCCCGATAAGCTCAATTAACTGTTTGCAGCCGATGGCATCTTCT Size Hit Count Total Norm
10	scf7180000396427:1592155-1592260 -	41.86	ACGAATCTGTACAGTGTAAGCAGTGTTTGAACT-CGATCTTGGTTCTTGGACTCTTGA-------TAAGCTCAATTAACTGTTTG----------CAGCGGACGGGATCTTCT CCTGATTAGTAAGTA---GCCATTGGATGAATTCCTATCAATTATCCTGGAACCTTATCCTTCGTTC----AGGTTTGCTGCCTTCGTTCGAGGTCCGCGAACATAATCCTAT Size Hit Count Total Norm
9	scf7180000396371:145355-145363 -	7.53	ACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATCTTGGTTCTTGGACTCTTGATAAGCTCAATTAACTGTTTGCAGCGGACGGGATCTTCT ATGAAACTG-------------------------------------------------------------------------------------- Size Hit Count Total Norm	None	None

dp4 - 4 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
2	chrXL_group1a:9060607-9060705 +	71.62	ACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATC--TTGGTTCT--TGGACTC--TTGATAAGCTCAATTAACTGTTTGCAGCGGACGGGATCTTCT ACGAATCGATACAGTGTAAGCAGCGATTGA--TCAATCAATTGAATCGAATCGAATCGAATGATAAACTCCATTAACTGTTTGCAGCCGATGGCATCTTCT Size Hit Count Total Norm V112 Male body V043 Embryo V051 Head M022 Male body ......................................AATCGAATCGAATCTAATCG........................................... 20 1 1.00 1.00 0.00 0.00 0.00 ......................................AATCGAATCGAATCGAATCGA.......................................... 21 1 1.00 1.00 0.00 0.00 0.00
15	chrXR_group6:7553770-7553825 -	16.4	ACGAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATCTTGGTTCTTGGACTCTTGA------TAAGCTCAATTAACTGTTTGCAGCGGACGGGATCTTCT ---------------------------------CGACCCTGCTGCTCAGCCACAAAAGGAGGAGGGATTCGATGGCTTGTTT-------------TCTGAT Size Hit Count Total Norm V112 Male body V043 Embryo V051 Head M022 Male body
16	Unknown_singleton_3077:358-398 -	10.41	AC-GAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATCTTGGTTCTTGGACTCTTGATAAGCTCAATTAACTGTTTGCAGCGGACGGGATCTTCT ATTGGATGAGCAGAGG-----CAGAG-------------------------------A--------------------CAGGCACAGAGACGTCGT Size Hit Count Total Norm V112 Male body V043 Embryo V051 Head M022 Male body		None
1	chr2:2668523-2668563 +	10.41	AC-GAATCTGTACAGTGTAAGCAGTGTTTGAACTCGATCTTGGTTCTTGGACTCTTGATAAGCTCAATTAACTGTTTGCAGCGGACGGGATCTTCT ATTGGATGAGCAGAGG-----CAGAG-------------------------------A--------------------CAGGCACAGAGACGTCGT Size Hit Count Total Norm V112 Male body V043 Embryo V051 Head M022 Male body		None