dme-mir-1003- Best orthologs

dme-mir-1003	chr3R:20484327-20484382 +	Known_mirbase
[View on miRBase]	[View on UCSC Genome Browser {Cornell Mirror}]	mirtron

Legend:

   mature strand at position 20484361-20484382
   star strand at position 20484327-20484348
   mutations
   read mismatches

20-way Fast Statistical Aligner (FSA) re-alignment

Visually pleasing best hits from LASTZ and MAF

Species	Coordinate	Source	Confidence	Alignment
dm3	chr3R:20484312-20484397 +		1	CAAGCTGCGCAGAAGGTGGGTATC-TGGATGTGGTTGGCTCT-------------G-GCGGTCCTCTCACATTTACATATTCACAGGCGCCGTGAGCTGCG
droSim1	chr3R:20323145-20323230 +	LASTZ	1	GAAGCTGCGCAGAAGGTGGGTATC-TGGATGTGGTTGGCTCT-------------G-GCGGTCCTCTCACATTTACATATTCACAGGCGCCGTGAGCTGCG
droSec1	super_0:20818704-20818789 +	LASTZ	1	GAAGCTGCGCAGAAGGTGGGTATC-TGGATGTGGTTGGCTCT-------------G-GCGGTCCTCTCACATTTACATATTCACAGGCGCCGTGAGCTGCG
droYak2	chr3R:26013202-26013287 -	LASTZ	1	GAAGCTGCGCAGAAGGTGGGTATC-TGGATGTGGTTGGCTCT-------------G-GCGGTCCTCTCACATTTACATATTCACAGGCGTCGTGAGCTGCG
droEre2	scaffold_4820:7574099-7574184 -	LASTZ	1	GAAACTGCGCAGAAGGTGGGTATC-TGGATGTGGTTGGCTCT-------------G-GCGGTCCTCTCACATTTACATATTCACAGGCGCCGTGAGCTGCG
droEug1	scf7180000409881:208840-208925 +	LASTZ	4	GAAGCTGCGCAGGAGGTGGGTATC-TTGATGTGGTTGGCTCC-------------G-GCTGTCCTCTCACATCTGTATATTCACAGGCGTCGTGAGCTGCG
droBia1	scf7180000302402:4263781-4263866 +	LASTZ	4	GAAGCTGCGCAGAAGGTGGGTATT-TTGATGTGGTTGGCTCT-------------G-GCGGTCCTCTCACATCTATATATTCACAGGCGTCGTGAGCTGCG
droTak1	scf7180000415310:656326-656411 -	LASTZ	4	GAAGCTGCGCAGGAGGTGGGTATC-TGGATGTGGTTGGCTCT-------------G-GCGGTCCTCTCACATCTACATATTCACAGGCGTCGTGAGCTGCG
droEle1	scf7180000491194:539733-539821 +	LASTZ	4	GAAGCTGCGCAGGAGGTGAGTATC-TTGATGTGGTTGGCTCT---TC------T-G-GGCGTCCTCTCACATCTACATATTCACAGGCGGCGTGAGCTGCG
droRho1	scf7180000779488:582443-582528 +	LASTZ	4	GAAGCTGCGCAGGAGGTGAGTATC-TTGATGTGGTCGGCTTT-------------A-GCGGTCCTCTCACATCTACATATTCACAGGCGCCGTGAGCTGCG
droFic1	scf7180000454106:1827848-1827933 -	LASTZ	4	GAAGCTGCGCAGAAGGTGAGTATC-TGGATGTGACTGGCTCT-------------T-GCGGTCCTCTCACATCTAGTTATTCTCAGGCGCCGTGAGCTGCG
droKik1	scf7180000302388:1718910-1719000 -	LASTZ	4	GAAACTGCGTCGAAGGTGAGTATTGTGGGTGTGGGTGGCTCT---GG------C-GGCCAGTCCTCTCACATCACCATATTCACAGGCGTCGCGAGCTACG
droAna3	scaffold_13340:4690326-4690418 -	LASTZ	1	CAAGCTACGCCGAAGGTGAGTATAGTGGATGTGGGTGGCTCT---TATT----T-GGCCGGTCCTCTCACATCTCCATATTCACAGGCGTCGAGAGCTGCG
droBip1	scf7180000396359:499291-499384 +	LASTZ	4	AAAGTTACGCCGAAGGTGAGTATAGTGGATGTGGGTGGCTCTAAATA------T-GGCCAGTCCTCTCACATCTCCATATTCACAGGCGTCGCGAGCTGCG
dp4	chr2:1751559-1751647 -	LASTZ	1	GAAGCTACGTAGAAGGTGGGTATCGTGCTTGTGGGTGGCTCT---TG--------G-TCAGTCCTCTCACATCTCTATATTCACAGGCGCCGCGAGTTGCG
droPer1	super_7:1904970-1905058 -	LASTZ	1	GAAGCTACGTAGAAGGTGGGTATCGTGCTTGTGGGTGGCTCT---TG--------G-TCAGTCCTCTCACATCTCTATATTCACAGGCGCCGCGAGTTGCG
droWil1	scaffold_181089:9616822-9616911 -	LASTZ	1	AAAGTTGCGCCGTAGGTGAGTATC-GGGTTGTGATTGGCTCC---TT------GTG-GTAGTCCTCTCACATCTCTATATTCACAGGCGTCGCGAGCTGCG
droVir3	scaffold_13047:780932-781019 +	LASTZ	1	AAAGCTGCGTCGTAGGTGAGTAAT-CAGTTGTGGGTGGCTTT---TT--------G-AAAGCCCTCTCACATCTCTTTATTCACAGGCGGCGTGAGTTGCG
droMoj3	scaffold_6540:4775668-4775755 +	LASTZ	1	CAAGCTGCGGCGCAGGTGAGTAAT-CAGTTGTGGGTGGCTCT---AG--------T-GAAGCCCTCTCACATCTCTTTATTCACAGGCGGCGAGAGTTGCG
droGri2	scaffold_14906:5529285-5529380 -	LASTZ	1	GAAATTGCGGCGCAGGTGAGTAAT-CAGTTGTGGGTGGCTTT---TGTTCTTAGGG-AAAGCCCTCTCACATCTCTTTATTCACAGGCGGCGCGAATTGCG

Legend

0- The ortholog is absent. A better synthenic sequence candidate could not be found.
1- Reads w/ good pileup on mature and star strand & folds into hairpin structure.
2- Reads w/ good pileup on mature and star strand BUT does not fold into hairpin structure.
3- Sporadic reads & folds into a hairpin structure.
4- No reads but folds into a hairpin structure.
5- Ortholog is confident but miRNA appears absent (no reads and does not fold into a hairpin)

Re-alignment after removal of non-confident orthologs

Species	Alignment
dm3	CAAGCTGCGCAGAAGGTGGGTATC-TGGATGTGGTTGGCTCT-------------G-GCGGTCCTCTCACATTTACATATTCACAGGCGCCGTGAGCTGCG
droSim1	GAAGCTGCGCAGAAGGTGGGTATC-TGGATGTGGTTGGCTCT-------------G-GCGGTCCTCTCACATTTACATATTCACAGGCGCCGTGAGCTGCG
droSec1	GAAGCTGCGCAGAAGGTGGGTATC-TGGATGTGGTTGGCTCT-------------G-GCGGTCCTCTCACATTTACATATTCACAGGCGCCGTGAGCTGCG
droYak2	GAAGCTGCGCAGAAGGTGGGTATC-TGGATGTGGTTGGCTCT-------------G-GCGGTCCTCTCACATTTACATATTCACAGGCGTCGTGAGCTGCG
droEre2	GAAACTGCGCAGAAGGTGGGTATC-TGGATGTGGTTGGCTCT-------------G-GCGGTCCTCTCACATTTACATATTCACAGGCGCCGTGAGCTGCG
droEug1	GAAGCTGCGCAGGAGGTGGGTATC-TTGATGTGGTTGGCTCC-------------G-GCTGTCCTCTCACATCTGTATATTCACAGGCGTCGTGAGCTGCG
droBia1	GAAGCTGCGCAGAAGGTGGGTATT-TTGATGTGGTTGGCTCT-------------G-GCGGTCCTCTCACATCTATATATTCACAGGCGTCGTGAGCTGCG
droTak1	GAAGCTGCGCAGGAGGTGGGTATC-TGGATGTGGTTGGCTCT-------------G-GCGGTCCTCTCACATCTACATATTCACAGGCGTCGTGAGCTGCG
droEle1	GAAGCTGCGCAGGAGGTGAGTATC-TTGATGTGGTTGGCTCT---TC------T-G-GGCGTCCTCTCACATCTACATATTCACAGGCGGCGTGAGCTGCG
droRho1	GAAGCTGCGCAGGAGGTGAGTATC-TTGATGTGGTCGGCTTT-------------A-GCGGTCCTCTCACATCTACATATTCACAGGCGCCGTGAGCTGCG
droFic1	GAAGCTGCGCAGAAGGTGAGTATC-TGGATGTGACTGGCTCT-------------T-GCGGTCCTCTCACATCTAGTTATTCTCAGGCGCCGTGAGCTGCG
droKik1	GAAACTGCGTCGAAGGTGAGTATTGTGGGTGTGGGTGGCTCT---GG------C-GGCCAGTCCTCTCACATCACCATATTCACAGGCGTCGCGAGCTACG
droAna3	CAAGCTACGCCGAAGGTGAGTATAGTGGATGTGGGTGGCTCT---TATT----T-GGCCGGTCCTCTCACATCTCCATATTCACAGGCGTCGAGAGCTGCG
droBip1	AAAGTTACGCCGAAGGTGAGTATAGTGGATGTGGGTGGCTCTAAATA------T-GGCCAGTCCTCTCACATCTCCATATTCACAGGCGTCGCGAGCTGCG
dp4	GAAGCTACGTAGAAGGTGGGTATCGTGCTTGTGGGTGGCTCT---TG--------G-TCAGTCCTCTCACATCTCTATATTCACAGGCGCCGCGAGTTGCG
droPer1	GAAGCTACGTAGAAGGTGGGTATCGTGCTTGTGGGTGGCTCT---TG--------G-TCAGTCCTCTCACATCTCTATATTCACAGGCGCCGCGAGTTGCG
droWil1	AAAGTTGCGCCGTAGGTGAGTATC-GGGTTGTGATTGGCTCC---TT------GTG-GTAGTCCTCTCACATCTCTATATTCACAGGCGTCGCGAGCTGCG
droVir3	AAAGCTGCGTCGTAGGTGAGTAAT-CAGTTGTGGGTGGCTTT---TT--------G-AAAGCCCTCTCACATCTCTTTATTCACAGGCGGCGTGAGTTGCG
droMoj3	CAAGCTGCGGCGCAGGTGAGTAAT-CAGTTGTGGGTGGCTCT---AG--------T-GAAGCCCTCTCACATCTCTTTATTCACAGGCGGCGAGAGTTGCG
droGri2	GAAATTGCGGCGCAGGTGAGTAAT-CAGTTGTGGGTGGCTTT---TGTTCTTAGGG-AAAGCCCTCTCACATCTCTTTATTCACAGGCGGCGCGAATTGCG

20-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droEug1	droBia1	droTak1	droEle1	droRho1	droFic1	droKik1	droAna3	droBip1	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image

Small RNA-seq read pileup

Species

Alignment

droSim1

GAAGCTGCGCAGAAGGTGGGTATC-TGGATGTGGTTGGCTCT-------------G-GCGGTCCTCTCACATTTACATATTCACAGGCGCCGTGAGCTGCG	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
................................................................TCTCACATTTACATATTCACAG...............	22	1	2407.00	42.00	1186.00	89.00	1090.00
................................................................TCTCACATTTACATATTCACA................	21	1	183.00	37.00	108.00	3.00	35.00
................................................................TCTCACATTTACATATTCACAC...............	22	1	48.00	0.00	20.00	4.00	24.00
...............GTGGGTATC-TGGATGTGGTTGG...............................................................	22	1	44.00	28.00	3.00	3.00	10.00
................................................................TCTCACATTTACATATTCACAGT..............	23	1	39.00	5.00	17.00	5.00	12.00
................................................................TCTCACATTTACATATTCAC.................	20	1	34.00	0.00	30.00	1.00	3.00
................................................................TCTCACATTTACATATTCACAGA..............	23	1	28.00	0.00	16.00	4.00	8.00
................................................................TCTCACATTTACATATTCA..................	19	1	9.00	0.00	9.00	0.00	0.00
................................................................TCTCACATTTACATATTCACAGG..............	23	1	9.00	0.00	3.00	2.00	4.00
.................................................................CTCACATTTACATATTCACAG...............	21	1	8.00	1.00	5.00	2.00	0.00
...............GTGGGTATC-TGGATGTGGTTG................................................................	21	1	7.00	7.00	0.00	0.00	0.00
.................................................................CTCACATTTACATATTCACAGT..............	22	1	5.00	3.00	1.00	0.00	1.00
................................................................TCTCACATTTACATATTCACAGTA.............	24	1	5.00	0.00	1.00	0.00	4.00
................................................................TCTCACATTTACATATTCACAGC..............	23	1	4.00	0.00	3.00	0.00	1.00
................................................................TCTCGCATTTACATATTCACAG...............	22	1	4.00	0.00	2.00	0.00	2.00
................................................................CCTCACATTTACATATTCACAG...............	22	1	4.00	0.00	2.00	0.00	2.00
................................................................TCTCACATTTACATATTCACGG...............	22	1	3.00	0.00	1.00	0.00	2.00
................................................................TCTCACATTTACATATTCACAA...............	22	1	3.00	0.00	1.00	1.00	1.00
.................................................................CTCACATTTACATATTCACAGA..............	22	1	3.00	1.00	1.00	1.00	0.00
................................................................TCCCACATTTACATATTCACAG...............	22	1	3.00	0.00	1.00	0.00	2.00
................................................................TCTCACGTTTACATATTCACAG...............	22	1	2.00	1.00	1.00	0.00	0.00
................................................................TCTCACATTTACATATTCACG................	21	1	2.00	0.00	1.00	0.00	1.00
................................................................TCTCACATTTACATATTCACAGAA.............	24	1	2.00	0.00	1.00	1.00	0.00
.....................................GCTCT-------------G-GCGGTCCTCTCAC...............................	19	1	2.00	0.00	2.00	0.00	0.00
................................................................TCTCACATTTACATATTAACAG...............	22	1	2.00	0.00	1.00	0.00	1.00
................................................................TCTCACATTCACATATTCACAG...............	22	1	2.00	0.00	2.00	0.00	0.00
................................................................TCTCACATTTACATATTCGCAG...............	22	1	1.00	0.00	0.00	0.00	1.00
................................................................TCTCACATTTACATATTC...................	18	1	1.00	0.00	1.00	0.00	0.00
...............GTGGGTATC-TGGATGTTGTTGG...............................................................	22	1	1.00	0.00	1.00	0.00	0.00
...............GTGGGTATC-TGGATGTGGTTGGC..............................................................	23	1	1.00	0.00	1.00	0.00	0.00
................................................................CCTCACATTTATATATTCACAG...............	22	1	1.00	0.00	0.00	0.00	1.00
................................................................TCTCACATTTATATATTCACA................	21	1	1.00	0.00	1.00	0.00	0.00
................................................................TTTCACATTTACATATTCACAGA..............	23	1	1.00	1.00	0.00	0.00	0.00
................................................................TCTCACATTTTCATATTCACAG...............	22	1	1.00	0.00	1.00	0.00	0.00
................................................................TCTCACATTTACATATTCAGAG...............	22	1	1.00	0.00	0.00	0.00	1.00
.....................ATC-TGGATGTGGTTGACC.............................................................	18	1	1.00	0.00	1.00	0.00	0.00
................................................................TCTCACATTTAAATATTCACAG...............	22	1	1.00	0.00	0.00	0.00	1.00
................................................................ACTCACATTTACATATTCACAG...............	22	1	1.00	0.00	1.00	0.00	0.00
................................................................CCTCACATTTACATACTCACAG...............	22	1	1.00	0.00	0.00	0.00	1.00
................................................................TCTCACATTTATATATTCACAG...............	22	1	1.00	0.00	1.00	0.00	0.00
................................................................TCTCACAxTTACATATTCACAG...............	21	1	1.00	0.00	1.00	0.00	0.00
...............GTGGGTGTC-TGGATGTGGTTG................................................................	21	1	1.00	1.00	0.00	0.00	0.00
................................................................TATCACATTTACATATTCACA................	21	1	1.00	1.00	0.00	0.00	0.00
................................................................TCTCACATCTACATATTCACAG...............	22	1	1.00	0.00	1.00	0.00	0.00
................................................................TCTCACATTTACATACTCACAG...............	22	1	1.00	0.00	0.00	0.00	1.00
................................................................TCTCACATTTACATGTTCACAG...............	22	1	1.00	0.00	0.00	0.00	1.00
...............GTGGGTATC-TGGATGTGGTTGGCTCT-------------G-............................................	27	1	1.00	0.00	0.00	1.00	0.00
................................................................TCTCACATTTCCATATTCACA................	21	1	1.00	1.00	0.00	0.00	0.00
....................................................................ACATTTACATATTCACAG...............	18	1	1.00	1.00	0.00	0.00	0.00
................................................................TCTCACATTTAAATATTCGCAG...............	22	1	1.00	0.00	1.00	0.00	0.00
................................................................TCTCACATTTACACATTCACAG...............	22	1	1.00	0.00	0.00	0.00	1.00
................................................................TCTCACGTTTACATATTCACA................	21	1	1.00	0.00	0.00	0.00	1.00
................................................................TCTCACATTTACATATTTACA................	21	1	1.00	1.00	0.00	0.00	0.00
................................................................TCTCACATTTACATATTCATAG...............	22	1	1.00	0.00	1.00	0.00	0.00
................................................................TCTCACATTTACATATTGACAG...............	22	1	1.00	0.00	0.00	0.00	1.00
...............GTGGGGATC-TGGATGTGGTTGG...............................................................	22	1	1.00	1.00	0.00	0.00	0.00
................................................................TCGCACATTTACATATTCACA................	21	1	1.00	1.00	0.00	0.00	0.00
................................................................TCTCACATTTACATATCCACAGT..............	23	1	1.00	1.00	0.00	0.00	0.00
.....................................GCTCT-------------G-GCGGTCCTCTCACATTT...........................	23	1	1.00	0.00	1.00	0.00	0.00
................................................................TCTCACATTTACATATTCAG.................	20	1	1.00	0.00	0.00	0.00	1.00
................................................................TCTCACATTTACCTATTCACA................	21	1	1.00	0.00	1.00	0.00	0.00
..................................................................TCACATTTACATATTCACAG...............	20	1	1.00	1.00	0.00	0.00	0.00
................................................................TCTCGCATTTACATATTCACAGT..............	23	1	1.00	0.00	1.00	0.00	0.00
................................................................TCTCACATTTACATATTCACAT...............	22	1	1.00	1.00	0.00	0.00	0.00
................................................................TCTCACAxTTACATATTCACAGT..............	22	1	1.00	0.00	1.00	0.00	0.00
................................................................TCTCACAGTTACATTTTCACA................	21	1	1.00	1.00	0.00	0.00	0.00
...............GTGGGTATC-TGGATGTGGTTGGTA.............................................................	24	1	1.00	1.00	0.00	0.00	0.00
................................................................TCCCACATTTACATATTCACA................	21	1	1.00	1.00	0.00	0.00	0.00
...............GTCGGTATC-TGGATGTGGTTGG...............................................................	22	1	1.00	0.00	1.00	0.00	0.00

droSec1

GAAGCTGCGCAGAAGGTGGGTATC-TGGATGTGGTTGGCTCT-------------G-GCGGTCCTCTCACATTTACATATTCACAGGCGCCGTGAGCTGCG	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
...............GTGGGTATC-TGGATGTGGTTGG...............................................................	22	1	219.00	45.00	133.00	41.00
................................................................TCTCACATTTACATATTCACA................	21	1	109.00	12.00	24.00	73.00
................................................................TCTCACATTTACATATTCACAG...............	22	1	102.00	5.00	51.00	46.00
................................................................TCTCACATTTACATATTCACAGT..............	23	1	72.00	13.00	39.00	20.00
...............GTGGGTATC-TGGATGTGGTTG................................................................	21	1	56.00	20.00	23.00	13.00
................................................................TCTCACATTTACATATTCA..................	19	1	14.00	0.00	0.00	14.00
.................................................................CTCACATTTACATATTCACAGT..............	22	1	11.00	3.00	5.00	3.00
................................................................TCTCACATTTACATATTCAC.................	20	1	7.00	0.00	0.00	7.00
...............GTGGGTATC-TGGATGTGGTTGGT..............................................................	23	1	6.00	2.00	4.00	0.00
...............GTGGGTATC-TGGATGTGGTTGGC..............................................................	23	1	5.00	2.00	1.00	2.00
...............GTGGGTATC-TGGATGTGGTTGGA..............................................................	23	1	5.00	4.00	0.00	1.00
................................................................TCTCACATTTACATATTCACAGA..............	23	1	5.00	0.00	0.00	5.00
...............GTGGGTATC-TGGATGTGGTT.................................................................	20	1	3.00	1.00	1.00	1.00
...............GTGGGTATC-TGGATGTGG...................................................................	18	1	3.00	0.00	1.00	2.00
...............GTGGGTATC-TGGATGTGGTTGT...............................................................	22	1	3.00	2.00	1.00	0.00
................................................................TCTCACATTTACATATTCACAGCA.............	24	1	2.00	0.00	0.00	2.00
...............GTGGGTATC-TGGATGTGGTTGA...............................................................	22	1	2.00	1.00	0.00	1.00
...............TTGGGTATC-TGGATGTGGTTGG...............................................................	22	1	2.00	0.00	1.00	1.00
..................................................................TCTCATTTACATATTCACAG...............	20	1	1.00	0.00	1.00	0.00
................................................................TCTCACATTTACATATTCACG................	21	1	1.00	0.00	1.00	0.00
...............GTGGATATC-TGGATGTGGTTGG...............................................................	22	1	1.00	0.00	1.00	0.00
...............GTGGGTATC-TGGATGTGGTAGG...............................................................	22	1	1.00	0.00	1.00	0.00
...............GTGGGTATC-TAGATGTGGTTGG...............................................................	22	1	1.00	0.00	1.00	0.00
................GTGGTATC-TGGATGTGGTTG................................................................	20	1	1.00	0.00	0.00	1.00
................................................................TCTCACATTTTCATATTCACAG...............	22	1	1.00	0.00	1.00	0.00
..................................................................TCTCATTTACATATTCACA................	19	1	1.00	0.00	0.00	1.00
...............GTGGGTATC-TGGATGTGGCTGG...............................................................	22	1	1.00	0.00	1.00	0.00
................................................................TCTCACATTTACATATACACA................	21	1	1.00	0.00	0.00	1.00
.....................ATC-TGGATGTGGTTGACC.............................................................	18	1	1.00	0.00	0.00	1.00
...............GTGGGTATC-TGGATGTTG...................................................................	18	2	0.50	0.00	0.00	0.50
................................................................ACTCACATTTACATATTCACAG...............	22	1	1.00	0.00	0.00	1.00
................................................................TCTCACAxTTACATATTCACAG...............	21	1	1.00	0.00	1.00	0.00
................................................................TCTCACATTTACACATTCACA................	21	1	1.00	0.00	1.00	0.00
................................................................TCTCACATTTACATATTCACAGTT.............	24	1	1.00	0.00	0.00	1.00
.................................................................CTCACATTTACATATTCACA................	20	1	1.00	0.00	0.00	1.00
..................................................................TCACATTTACATATTCACAGT..............	21	1	1.00	0.00	1.00	0.00
................TGGGTATC-TGGATGTGGTTGG...............................................................	21	1	1.00	0.00	0.00	1.00
.................................................................CTCACATTTACATATTCACAGA..............	22	1	1.00	1.00	0.00	0.00
................................................................TCTCACATTCACATATTCACAGT..............	23	1	1.00	0.00	0.00	1.00
...............GTGGGTATC-TGGATGTGGTTGCA..............................................................	23	1	1.00	1.00	0.00	0.00
................................................................TCTCACATTTACGTATTCACAGT..............	23	1	1.00	1.00	0.00	0.00
...............GTGGGTATC-TGGATGTGGCTG................................................................	21	1	1.00	1.00	0.00	0.00
...............GTGGGTATC-TGGATGTGGTTGGAT.............................................................	24	1	1.00	0.00	1.00	0.00
..................................................................TCACATTTACATATTCACA................	19	1	1.00	0.00	0.00	1.00
...............GTGGGGATC-TGGATGTGGTTG................................................................	21	1	1.00	1.00	0.00	0.00
.................................................................CTCACATTTACATATTCACAG...............	21	1	1.00	0.00	1.00	0.00
................................................................TCTCACATTTACATATTCAGT................	21	1	1.00	0.00	1.00	0.00
................................................................TCTCACAATTACATATTCACAG...............	22	1	1.00	0.00	0.00	1.00
....................AATC-TGGATGTGGTTGAC..............................................................	18	1	1.00	0.00	1.00	0.00
.................................................................CTCACATTTACATATTCACAGTT.............	23	1	1.00	0.00	0.00	1.00
.................GGGTATC-TGGATGTGGTTGG...............................................................	20	1	1.00	0.00	0.00	1.00
...............GTGGGTATC-TGGATGTGCTTGG...............................................................	22	1	1.00	0.00	1.00	0.00
................................................................TCTCACATTTACATATTCACATT..............	23	1	1.00	0.00	0.00	1.00
...............GTGGGTATC-TGGATGTGGTTGGTA.............................................................	24	1	1.00	0.00	0.00	1.00
...............GTGGGTATC-TGGATGTGGT..................................................................	19	1	1.00	0.00	0.00	1.00
...............GTGGGTATC-TGGATGTGGTTGGCT.............................................................	24	1	1.00	1.00	0.00	0.00

droYak2

GAAGCTGCGCAGAAGGTGGGTATC-TGGATGTGGTTGGCTCT-------------G-GCGGTCCTCTCACATTTACATATTCACAGGCGTCGTGAGCTGCG	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
................................................................TCTCACATTTACATATTCACAG...............	22	1	506.00	27.00	6.00	2.00	11.00	460.00
................................................................TCTCACATTTACATATTCACA................	21	1	124.00	34.00	18.00	4.00	19.00	49.00
................................................................TCTCACATTTACATATTCACAGT..............	23	1	42.00	11.00	4.00	9.00	12.00	6.00
...............GTGGGTATC-TGGATGTGGTTGG...............................................................	22	1	27.00	17.00	1.00	4.00	5.00	0.00
...............GTGGGTATC-TGGATGTGGTTG................................................................	21	1	21.00	14.00	0.00	2.00	4.00	1.00
................................................................TCTCACATTTACATATTCAC.................	20	1	13.00	0.00	0.00	0.00	1.00	12.00
.................................................................CTCACATTTACATATTCACAGT..............	22	1	10.00	4.00	2.00	1.00	2.00	1.00
................................................................TCTCACATTTACATATTCACAC...............	22	1	6.00	0.00	0.00	0.00	0.00	6.00
................................................................TCTCACATTTACATATTCA..................	19	1	3.00	1.00	0.00	0.00	1.00	1.00
................................................................TCTCACATTTACATATTCACCG...............	22	1	2.00	1.00	0.00	0.00	0.00	1.00
................................................................TCTCACATTTACATCTTCACAG...............	22	1	2.00	0.00	0.00	0.00	2.00	0.00
..................................................................TCACATTTACATATTCACAGT..............	21	1	2.00	1.00	0.00	0.00	1.00	0.00
................................................................TCTCACATTTACATATTCACAGA..............	23	1	2.00	0.00	0.00	0.00	1.00	1.00
................................................................TCTCACATTTACATATTCACC................	21	1	2.00	1.00	0.00	0.00	1.00	0.00
...............GTGGGTATC-TGGGTGTGGTTGG...............................................................	22	1	1.00	1.00	0.00	0.00	0.00	0.00
................................................................TCTCACATTTACATATTCACAGC..............	23	1	1.00	0.00	0.00	0.00	0.00	1.00
................................................................TCTCACATTTACATAGTCACA................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
................................................................TCTCACATTTACATATTCACCGT..............	23	1	1.00	1.00	0.00	0.00	0.00	0.00
................................................................TCTCCCATTGACATATTCACAG...............	22	1	1.00	0.00	0.00	0.00	1.00	0.00
................................................................TCTCACATGTACATATTCACA................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
................................................................TCTCAAATTTACATATTCACAGT..............	23	1	1.00	0.00	0.00	0.00	1.00	0.00
................................................................TCGCACATTTACATATTCACA................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
................................................................TCTCACATTTGCATATTCA..................	19	1	1.00	0.00	0.00	0.00	1.00	0.00
..................................................................TCACATTTACATATTCACA................	19	1	1.00	0.00	0.00	0.00	1.00	0.00
.................................................................CTCACATTTACATATTCACAG...............	21	1	1.00	0.00	0.00	0.00	0.00	1.00
.....................................GCTCT-------------G-GCGGTCCTCTCACATTT...........................	23	1	1.00	0.00	0.00	0.00	0.00	1.00
................................................................TCTCACATTTAAATATTCACAG...............	22	1	1.00	0.00	0.00	0.00	0.00	1.00
................................................................TCTCACATTTACTTATTCACAG...............	22	1	1.00	0.00	0.00	0.00	0.00	1.00
...............GTGGGTATC-TGGCTGGGGTTGGC..............................................................	23	1	1.00	0.00	0.00	0.00	1.00	0.00
................................................................TCTCACATTTACATATTCCCAC...............	22	1	1.00	0.00	0.00	0.00	0.00	1.00
................................................................TCTCACATTTACATATTCCCA................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
.................................................................CTCACATTTCCATATTCACAGT..............	22	1	1.00	0.00	0.00	0.00	1.00	0.00
................................................................TCTCACATTTACATACTCACAG...............	22	1	1.00	1.00	0.00	0.00	0.00	0.00
...............GTGGGTATC-TGGATGTGGTTTG...............................................................	22	1	1.00	1.00	0.00	0.00	0.00	0.00
................................................................TCTCACATTTACATGTTCACAG...............	22	1	1.00	0.00	0.00	0.00	0.00	1.00
...............GTGGGTATC-TGGATGTGGTTGGT..............................................................	23	1	1.00	0.00	0.00	1.00	0.00	0.00
................................................................TAACACATTTACATATTCACA................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
................................................................TCTCACATTTACATATTAACAG...............	22	1	1.00	0.00	0.00	0.00	0.00	1.00
................................................................TCTCACATTTACATCTTCACA................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
.................................................................CTCACATTTACATATTCCCA................	20	1	1.00	0.00	0.00	0.00	1.00	0.00
................................................................TCTCACCTTTACATATTCACAG...............	22	1	1.00	0.00	0.00	0.00	1.00	0.00
................................................................TCTAACATTTACATATTCACA................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
................................................................TCTCACATTTACATATTCCCAG...............	22	1	1.00	0.00	0.00	0.00	0.00	1.00
...............................................................CTCTCACATTTACATATTCACAG...............	23	1	1.00	1.00	0.00	0.00	0.00	0.00

droEre2

GAAACTGCGCAGAAGGTGGGTATC-TGGATGTGGTTGGCTCT-------------G-GCGGTCCTCTCACATTTACATATTCACAGGCGCCGTGAGCTGCG	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
................................................................TCTCACATTTACATATTCACA................	21	1	297.00	25.00	20.00	0.00	252.00
................................................................TCTCACATTTACATATTCACAG...............	22	1	246.00	23.00	25.00	0.00	198.00
...............GTGGGTATC-TGGATGTGGTTGG...............................................................	22	1	138.00	20.00	6.00	0.00	112.00
................................................................TCTCACATTTACATATTCACAGT..............	23	1	69.00	2.00	9.00	0.00	58.00
...............GTGGGTATC-TGGATGTGGTTG................................................................	21	1	26.00	3.00	2.00	0.00	21.00
................................................................TCTCACATTTACATATTCA..................	19	1	17.00	0.00	0.00	0.00	17.00
................................................................TCTCACATTTACATATTCAC.................	20	1	15.00	0.00	1.00	0.00	14.00
.................................................................CTCACATTTACATATTCACAGT..............	22	1	13.00	0.00	1.00	0.00	12.00
...............GTGGGTATC-TGGATGTGGTTTG...............................................................	22	1	6.00	3.00	2.00	0.00	1.00
................................................................TCTCACATTTACATATTCACAGA..............	23	1	6.00	1.00	0.00	0.00	5.00
................................................................TATCACATTTACATATTCACAG...............	22	1	4.00	0.00	0.00	0.00	4.00
................................................................CCTCACATTTACATATTCACA................	21	1	4.00	1.00	2.00	0.00	1.00
.................................................................CTCACATTTACATATTCACAG...............	21	1	3.00	0.00	1.00	0.00	2.00
................................................................TCTCACATTTACATATTAACAG...............	22	1	3.00	0.00	0.00	0.00	3.00
...............GTGGGTATC-TGGATGTGGTTT................................................................	21	1	3.00	2.00	1.00	0.00	0.00
................................................................TCTCACATTTACATATTCACAGC..............	23	1	2.00	0.00	0.00	0.00	2.00
...............GTGGGTATC-TGGATGTTGTTGG...............................................................	22	1	2.00	1.00	0.00	0.00	1.00
...............GTGGGTATC-TGGATGTGGTTGGC..............................................................	23	1	2.00	0.00	0.00	0.00	2.00
...............GTTGGTATC-TGGATGTGGTTGG...............................................................	22	1	2.00	0.00	0.00	0.00	2.00
................................................................TCTCACATTTATATATTCACAG...............	22	1	2.00	0.00	0.00	0.00	2.00
................................................................TATCACATTTACATATTCACA................	21	1	2.00	0.00	0.00	0.00	2.00
................TGGGTATC-TGGATGTGGTTGG...............................................................	21	1	2.00	0.00	0.00	0.00	2.00
................................................................TCTCACATTTAAATATTCACA................	21	1	2.00	0.00	0.00	0.00	2.00
..................................................................TCACATTTACATATTCACAG...............	20	1	2.00	0.00	0.00	0.00	2.00
................................................................TCTCACATTTACATATTCACAT...............	22	1	2.00	0.00	0.00	0.00	2.00
...............GTGGGTATC-TGGATGTGGTTGGT..............................................................	23	1	2.00	0.00	0.00	0.00	2.00
................................................................TCTCACACTTACATATTCACAG...............	22	1	1.00	1.00	0.00	0.00	0.00
...............GTGGGTATC-TGAATGTGGTTGG...............................................................	22	1	1.00	0.00	0.00	0.00	1.00
..................................................................TCTCACTTACATATTCACA................	19	1	1.00	0.00	0.00	0.00	1.00
...............TTGGGTATC-TGGATTTGGTTGG...............................................................	22	1	1.00	1.00	0.00	0.00	0.00
................................................................TCTCACATTTACATATTAACAGT..............	23	1	1.00	0.00	0.00	0.00	1.00
................................................................TCTCAAATTTACATATTCACA................	21	1	1.00	0.00	0.00	0.00	1.00
...............GTGGGTATC-TGGATGTGGTTGGCTC............................................................	25	1	1.00	0.00	0.00	0.00	1.00
...............GTGGGTATC-TGGATGTGGCTGG...............................................................	22	1	1.00	0.00	0.00	0.00	1.00
................................................................TCTCACATTTAAATATTCACAG...............	22	1	1.00	0.00	0.00	0.00	1.00
................................................................TCTCACATTTACAGATTCACA................	21	1	1.00	0.00	1.00	0.00	0.00
................................................................TCTCACATTTACATATTCACAA...............	22	1	1.00	0.00	0.00	0.00	1.00
................................................................TGGCACATTTACATATTCACA................	21	1	1.00	1.00	0.00	0.00	0.00
.................................................................CTCACATTTACATATTCAAAGT..............	22	1	1.00	1.00	0.00	0.00	0.00
................................................................TCTCACATCCACATATTCACA................	21	1	1.00	1.00	0.00	0.00	0.00
...............GTGGGTATC-TGGATGTGGTTGGCTCT-------------..............................................	26	1	1.00	0.00	0.00	0.00	1.00
................................................................TCTAACATTTACATATTCACAGT..............	23	1	1.00	0.00	0.00	0.00	1.00
...............GTGGGTATC-TCGATGTGGTTGG...............................................................	22	1	1.00	0.00	0.00	0.00	1.00
...............GTGGGCATC-TGGATGTGGTTG................................................................	21	1	1.00	1.00	0.00	0.00	0.00
................................................................TCTCACATTTACATATTCACAGTT.............	24	1	1.00	0.00	0.00	0.00	1.00
................................................................TCTCACATTTACATGTTCACAG...............	22	1	1.00	1.00	0.00	0.00	0.00
...............GGGGGTATC-TGGCTGTGGTTGG...............................................................	22	1	1.00	1.00	0.00	0.00	0.00
................................................................TCTTACATTTACATATTCAC.................	20	1	1.00	0.00	0.00	0.00	1.00
...............GTGGGTATC-TGGATGTGGTT.................................................................	20	1	1.00	0.00	0.00	0.00	1.00
................................................................TCTCACATATACATATACACA................	21	1	1.00	1.00	0.00	0.00	0.00
................................................................TCTCACATTTACATATTCACCG...............	22	1	1.00	1.00	0.00	0.00	0.00
................................................................TCTCACATTTTCATATTCACAT...............	22	1	1.00	0.00	0.00	0.00	1.00
................................................................TCTAACATTTACATATTCACAG...............	22	1	1.00	0.00	0.00	0.00	1.00
...............ATGGGTATC-TGGATGTGGTTGG...............................................................	22	1	1.00	0.00	0.00	0.00	1.00
................................................................TCTCACATTTACCTATTCACAG...............	22	1	1.00	0.00	0.00	0.00	1.00
................................................................TATCACATTTACATATTCACAGC..............	23	1	1.00	0.00	0.00	0.00	1.00
................................................................TCTCACATTTACATATTCAA.................	20	1	1.00	0.00	0.00	0.00	1.00
..................................................................TCACATTTACATATTCACA................	19	1	1.00	0.00	0.00	0.00	1.00
...................................................................CACATTTACATATTCACAGT..............	20	1	1.00	0.00	0.00	0.00	1.00
................................................................TCTCATATTTACATATTCACAG...............	22	1	1.00	0.00	1.00	0.00	0.00
...............GTGGGTATC-TTGATGTGG...................................................................	18	1	1.00	0.00	0.00	0.00	1.00
................................................................TCTCACATTTACACATTCACAGT..............	23	1	1.00	0.00	0.00	0.00	1.00
...............GTGGGTATC-TTGATGTGGTTGT...............................................................	22	1	1.00	0.00	1.00	0.00	0.00
................................................................TCTCACATTTACCTATTCACA................	21	1	1.00	0.00	0.00	0.00	1.00
...............GTGGGTATC-TGGATATGGTTG................................................................	21	1	1.00	0.00	0.00	0.00	1.00
...............GTGGGTATC-TGTATGTGGTTGG...............................................................	22	1	1.00	0.00	0.00	0.00	1.00
...................................................................CACATTTACATATTCACAG...............	19	1	1.00	1.00	0.00	0.00	0.00
...............GTGGGTATC-TGCATGTGGTTGG...............................................................	22	1	1.00	1.00	0.00	0.00	0.00
................................................................TATCACATTTACATATTCACAGT..............	23	1	1.00	0.00	0.00	0.00	1.00
...............GTGGTTATC-TGGATGTGGTTGG...............................................................	22	1	1.00	1.00	0.00	0.00	0.00
................................................................TCTTACATTTACATATTCACAG...............	22	1	1.00	0.00	0.00	0.00	1.00
...............GTGGGTATC-TGGATGTGGTTGGTA.............................................................	24	1	1.00	0.00	0.00	0.00	1.00
...................................................................CACATTCACATATTCACA................	18	1	1.00	0.00	0.00	0.00	1.00
................................................................TCCCACATTTACATATTCACA................	21	1	1.00	0.00	0.00	0.00	1.00
...............GTGGGTATC-TGGATGTGGT..................................................................	19	1	1.00	0.00	0.00	0.00	1.00
...............GTGGGTATC-TTGATGTGGTTGG...............................................................	22	1	1.00	0.00	0.00	0.00	1.00
................................................................TCTCACATTTACATATTCACC................	21	1	1.00	1.00	0.00	0.00	0.00
................................................................TCTCACATTTAAATATTCACAGA..............	23	1	1.00	0.00	0.00	0.00	1.00
................................................................TCTCACATTTACATATTCACGC...............	22	1	1.00	0.00	0.00	0.00	1.00

droEug1

GAAGCTGCGCAGGAGGTGGGTATC-TTGATGTGGTTGGCTCC-------------G-GCTGTCCTCTCACATCTGTATATTCACAGGCGTCGTGAGCTGCG

Size

Hit Count

Total Norm

droBia1

GAAGCTGCGCAGAAGGTGGGTATT-TTGATGTGGTTGGCTCT-------------G-GCGGTCCTCTCACATCTATATATTCACAGGCGTCGTGAGCTGCG

Size

Hit Count

Total Norm

droTak1

GAAGCTGCGCAGGAGGTGGGTATC-TGGATGTGGTTGGCTCT-------------G-GCGGTCCTCTCACATCTACATATTCACAGGCGTCGTGAGCTGCG

Size

Hit Count

Total Norm

droEle1

GAAGCTGCGCAGGAGGTGAGTATC-TTGATGTGGTTGGCTCT---TC------T-G-GGCGTCCTCTCACATCTACATATTCACAGGCGGCGTGAGCTGCG

Size

Hit Count

Total Norm

droRho1

GAAGCTGCGCAGGAGGTGAGTATC-TTGATGTGGTCGGCTTT-------------A-GCGGTCCTCTCACATCTACATATTCACAGGCGCCGTGAGCTGCG

Size

Hit Count

Total Norm

droFic1

GAAGCTGCGCAGAAGGTGAGTATC-TGGATGTGACTGGCTCT-------------T-GCGGTCCTCTCACATCTAGTTATTCTCAGGCGCCGTGAGCTGCG

Size

Hit Count

Total Norm

droKik1

GAAACTGCGTCGAAGGTGAGTATTGTGGGTGTGGGTGGCTCT---GG------C-GGCCAGTCCTCTCACATCACCATATTCACAGGCGTCGCGAGCTACG

Size

Hit Count

Total Norm

droAna3

CAAGCTACGCCGAAGGTGAGTATAGTGGATGTGGGTGGCTCT---TATT----T-GGCCGGTCCTCTCACATCTCCATATTCACAGGCGTCGAGAGCTGCG	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
...............GTGAGTATAGTGGATGTGGGTGG...............................................................	23	1	564.00	176.00	385.00	3.00	0.00
................................................................TCTCACATCTCCATATTCACAG...............	22	1	265.00	12.00	94.00	51.00	108.00
................................................................TCTCACATCTCCATATTCACAGT..............	23	1	182.00	33.00	49.00	75.00	25.00
................................................................TCTCACATCTCCATATTCACA................	21	1	154.00	8.00	29.00	47.00	70.00
...............GTGAGTATAGTGGATGTGGGTGGT..............................................................	24	1	46.00	13.00	33.00	0.00	0.00
................................................................TCTCACATCTCCATATTCAC.................	20	1	35.00	1.00	14.00	8.00	12.00
................................................................TCTCACATCTCCATATTCACAGTT.............	24	1	29.00	2.00	16.00	8.00	3.00
...............GTGAGTATAGTGGATGTGGGTG................................................................	22	1	17.00	8.00	9.00	0.00	0.00
................TGAGTATAGTGGATGTGGGTGG...............................................................	22	1	16.00	2.00	13.00	1.00	0.00
...............GTGAGTATAGTGGATGTGGGT.................................................................	21	1	14.00	6.00	7.00	0.00	1.00
...............GTGAGTATAGTGGATGTGGG..................................................................	20	1	13.00	10.00	3.00	0.00	0.00
...............GTGAGTATAGTGGATGTGGGTGGTT.............................................................	25	1	11.00	2.00	9.00	0.00	0.00
...............GTGAGTATAGTGGATGTGG...................................................................	19	1	9.00	1.00	8.00	0.00	0.00
...............GTGAGTATAGTGGATGTGGGTGT...............................................................	23	1	8.00	2.00	6.00	0.00	0.00
................................................................TCTCACATCTCCATATTCA..................	19	1	8.00	0.00	2.00	6.00	0.00
................TGAGTATAGTGGATGTGGGTGGT..............................................................	23	1	8.00	1.00	7.00	0.00	0.00
...............GTTAGTATAGTGGATGTGGGTGG...............................................................	23	1	7.00	0.00	7.00	0.00	0.00
...............GTGAGTATAGTGGATGTGGGAGG...............................................................	23	1	6.00	2.00	4.00	0.00	0.00
................................................................TCTCACATCTCCATATTCACAT...............	22	1	6.00	0.00	0.00	0.00	6.00
...............GTGAGTATAGTGGATGTGGGCGG...............................................................	23	1	6.00	3.00	3.00	0.00	0.00
...............GTGAGTATAGTGGATGTTGGTGG...............................................................	23	1	5.00	1.00	4.00	0.00	0.00
...............GTGAGTATAGTGGATGTGGGTTG...............................................................	23	1	4.00	0.00	3.00	1.00	0.00
................TGAGTATAGTGGATGTGGGTG................................................................	21	1	4.00	0.00	4.00	0.00	0.00
................................................................TATCACATCTCCATATTCACAG...............	22	1	4.00	0.00	2.00	0.00	2.00
................TGAGTATAGTGGATGTGGGT.................................................................	20	1	4.00	1.00	1.00	1.00	1.00
.................GAGTATAGTGGATGTGGGTGG...............................................................	21	1	3.00	0.00	3.00	0.00	0.00
...............GTTAGTATAGTGGATGTGGGTGT...............................................................	23	1	3.00	0.00	3.00	0.00	0.00
................................................................TCTCACATCTCCATATTCACAGA..............	23	1	3.00	0.00	2.00	0.00	1.00
................................................................TCTCACATCTCCATATTCACC................	21	1	3.00	0.00	1.00	0.00	2.00
...............GTGAGTATAGTTGATGTGGGTGG...............................................................	23	1	3.00	1.00	2.00	0.00	0.00
...............GTGAGTATAGTGGATGTGGGGGG...............................................................	23	1	3.00	1.00	1.00	1.00	0.00
.................................................................CTCACATCTCCATATTCACAGT..............	22	1	3.00	2.00	1.00	0.00	0.00
................................................................TCTCACATCTCCATATTCACCG...............	22	1	3.00	0.00	1.00	0.00	2.00
...............GTGAGCATAGTGGATGTGGGTGG...............................................................	23	1	3.00	2.00	1.00	0.00	0.00
................................................................TCTCACATCTCCATATTCACAC...............	22	1	3.00	0.00	0.00	0.00	3.00

droBip1

AAAGTTACGCCGAAGGTGAGTATAGTGGATGTGGGTGGCTCTAAATA------T-GGCCAGTCCTCTCACATCTCCATATTCACAGGCGTCGCGAGCTGCG

Size

Hit Count

Total Norm

dp4

GAAGCTACGTAGAAGGTGGGTATCGTGCTTGTGGGTGGCTCT---TG--------G-TCAGTCCTCTCACATCTCTATATTCACAGGCGCCGCGAGTTGCG	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
................................................................TCTCACATCTCTATATTCACAG...............	22	1	644.00	8.00	425.00	211.00	0.00
................................................................TCTCACATCTCTATATTCACA................	21	1	243.00	5.00	142.00	94.00	2.00
................................................................TCTCACATCTCTATATTCACAGT..............	23	1	222.00	29.00	48.00	145.00	0.00
...............GTGGGTATCGTGCTTGTGGGTGG...............................................................	23	1	69.00	26.00	29.00	14.00	0.00
................................................................TCTCACATCTCTTTATTCACAG...............	22	1	18.00	0.00	18.00	0.00	0.00
................................................................TCTCACATCTCTTTATTCACA................	21	1	12.00	0.00	12.00	0.00	0.00
................................................................TCTCACATCTCTATATTCAC.................	20	1	12.00	0.00	4.00	8.00	0.00
...............GTGGGTATCGTGCTTGTGGGT.................................................................	21	1	6.00	3.00	1.00	2.00	0.00
................................................................TCTCACATCTCTATATTCACAGA..............	23	1	6.00	1.00	3.00	2.00	0.00
................................................................TCGCACATCTCTATATTCACAG...............	22	1	5.00	0.00	3.00	2.00	0.00
................................................................TCTCACATCTCTATATTCA..................	19	1	4.00	1.00	1.00	2.00	0.00
................................................................TCTCACATCTCTATCTTCACA................	21	1	4.00	0.00	3.00	1.00	0.00
................................................................TCTCACATCTCTATATTCACCG...............	22	1	4.00	0.00	3.00	1.00	0.00
................................................................TCTCACATCTCTATATTCACAC...............	22	1	4.00	1.00	2.00	1.00	0.00
...............GTGGGTATCGTGCTTGTGGGTG................................................................	22	1	3.00	0.00	3.00	0.00	0.00
................................................................TCTCACATCTCTTTATTCACAGT..............	23	1	3.00	0.00	3.00	0.00	0.00
................................................................TTTCACATCTCTATATTCACAG...............	22	1	3.00	1.00	2.00	0.00	0.00
................................................................TCTCACATATCTATATTCACAG...............	22	1	3.00	0.00	3.00	0.00	0.00
...............GTGGGTATCGTGCTTGTGG...................................................................	19	1	3.00	3.00	0.00	0.00	0.00
...............GTGGGTATCGTGCTTGTGGGTGGC..............................................................	24	1	3.00	2.00	1.00	0.00	0.00
................................................................TCTCACATCTCTATATGCACAG...............	22	1	3.00	0.00	2.00	1.00	0.00
................................................................TCTCACTTCTCTATATTCACAG...............	22	1	3.00	0.00	2.00	1.00	0.00
................................................................TCTCACATCTCTATCTTCACAG...............	22	1	3.00	0.00	2.00	1.00	0.00
................................................................TCTCACATCTCTCTATTCACAG...............	22	1	3.00	0.00	2.00	1.00	0.00
..................................................................TCACATCTCTATATTCACAG...............	20	1	3.00	0.00	0.00	3.00	0.00
................................................................TCTCACATCTCTCTATTCACA................	21	1	3.00	0.00	1.00	2.00	0.00
...............GTGGGTATCGTGCTTGTGGG..................................................................	20	1	3.00	1.00	1.00	1.00	0.00

droPer1

GAAGCTACGTAGAAGGTGGGTATCGTGCTTGTGGGTGGCTCT---TG--------G-TCAGTCCTCTCACATCTCTATATTCACAGGCGCCGCGAGTTGCG	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
................................................................TCTCACATCTCTATATTCACAG...............	22	1	646.00	2.00	107.00	214.00	109.00	214.00
................................................................TCTCACATCTCTATATTCACAGT..............	23	1	233.00	2.00	9.00	98.00	116.00	8.00
................................................................TCTCACATCTCTATATTCACA................	21	1	162.00	0.00	49.00	73.00	35.00	5.00
...............GTGGGTATCGTGCTTGTGGGTGG...............................................................	23	1	110.00	69.00	12.00	15.00	11.00	3.00
...............GTGGGTATCGTGCTTGTGGGT.................................................................	21	1	19.00	13.00	0.00	3.00	3.00	0.00
...............GTGGGTATCGTGCTTGTGGG..................................................................	20	1	19.00	15.00	0.00	1.00	3.00	0.00
................................................................TCTCACATCTCTATATTCACACC..............	23	1	18.00	0.00	1.00	0.00	0.00	17.00
................................................................TCTCACATCTCTATATTCAC.................	20	1	17.00	0.00	1.00	5.00	11.00	0.00
................................................................TCTCACATCTCTATATTCACAC...............	22	1	9.00	0.00	2.00	2.00	0.00	5.00
................................................................TCTCACATCTCTATATTCACAGA..............	23	1	7.00	0.00	2.00	1.00	2.00	2.00
...............GTGGGTATCGTGCTTGTGGGTG................................................................	22	1	6.00	3.00	3.00	0.00	0.00	0.00
...............GTGGGTATCGTGCTTGTGG...................................................................	19	1	5.00	4.00	0.00	0.00	1.00	0.00
...............GTGGGTATCGTGCTTGTGGT..................................................................	20	1	5.00	4.00	0.00	1.00	0.00	0.00
................................................................TCTCACATCTCTATATTCACAGTT.............	24	1	5.00	0.00	1.00	1.00	3.00	0.00
................................................................TCTCACATCTCTATATTCA..................	19	1	4.00	0.00	0.00	1.00	3.00	0.00
...............GTGGGTATCGTGCTTGTGGGTGGC..............................................................	24	1	4.00	4.00	0.00	0.00	0.00	0.00
................................................................TCTCACATCTCCATATTCACAG...............	22	1	4.00	0.00	4.00	0.00	0.00	0.00
................................................................TCTCACATCTCTATCTTCACAG...............	22	1	4.00	0.00	1.00	1.00	2.00	0.00
...............GTGGGTATCGTGCTTGTGGGTGGT..............................................................	24	1	4.00	3.00	1.00	0.00	0.00	0.00
................................................................TCTCACATCTCCATATTCAC.................	20	1	3.00	0.00	2.00	0.00	0.00	1.00
..................................................................TCACATCTCTATATTCACA................	19	1	3.00	0.00	1.00	1.00	1.00	0.00

droWil1

AAAGTTGCGCCGTAGGTGAGTATC-GGGTTGTGATTGGCTCC---TT------GTG-GTAGTCCTCTCACATCTCTATATTCACAGGCGTCGCGAGCTGCG	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
................................................................TCTCACATCTCTATATTCACAG...............	22	1	6582.00	8.00	1898.00	1029.00	3647.00
................................................................TCTCACATCTCTATATTCACA................	21	1	943.00	2.00	293.00	406.00	242.00
...............GTGAGTATC-GGGTTGTGATTGG...............................................................	22	1	649.00	134.00	241.00	266.00	8.00
................................................................TCTCACATCTCTATATTCACAGT..............	23	1	406.00	10.00	229.00	92.00	75.00
................................................................TCTCACATCTCTATATTCAC.................	20	1	123.00	0.00	17.00	26.00	80.00
...............GTGAGTATC-GGGTTGTGATTG................................................................	21	1	78.00	21.00	39.00	14.00	4.00
................................................................TCTCACATCTCTATATTCACAC...............	22	1	47.00	1.00	2.00	1.00	43.00
................................................................TCTCACATCTCTATATTCA..................	19	1	28.00	0.00	4.00	12.00	12.00
................................................................TCTCACATCTCTATATTCACAGA..............	23	1	23.00	1.00	4.00	2.00	16.00
................................................................TATCACATCTCTATATTCACAG...............	22	1	19.00	0.00	15.00	4.00	0.00
................................................................TCTCACATCTCTATATTCACAA...............	22	1	14.00	0.00	8.00	4.00	2.00
................................................................TCTAACATCTCTATATTCACAG...............	22	1	14.00	0.00	7.00	7.00	0.00
.................................................................CTCACATCTCTATATTCACAG...............	21	1	12.00	0.00	3.00	4.00	5.00
................................................................TCCCACATCTCTATATTCACAG...............	22	1	12.00	0.00	2.00	3.00	7.00
................................................................CCTCACATCTCTATATTCACAG...............	22	1	11.00	0.00	3.00	5.00	3.00
................................................................TCTCACATCTCTGTATTCACAG...............	22	1	11.00	0.00	0.00	0.00	11.00
................................................................TCTCACATCTCTATATTCACAGC..............	23	1	10.00	0.00	2.00	0.00	8.00
................................................................TCTCACATCTCTATATTCACAGG..............	23	1	9.00	0.00	0.00	0.00	9.00
................................................................TCTCACATCTCTATATTCACGG...............	22	1	8.00	0.00	2.00	0.00	6.00
................................................................TCTCACATCTCCATATTCACAG...............	22	1	8.00	0.00	2.00	5.00	1.00
...............GTGAGTATC-GGGTTGTGATTGGT..............................................................	23	1	8.00	3.00	3.00	2.00	0.00
................................................................TCTCACATCTCTATATTCAAAG...............	22	1	7.00	0.00	3.00	3.00	1.00
................................................................TCTCAAATCTCTATATTCACAG...............	22	1	7.00	0.00	3.00	4.00	0.00
................................................................TCTCACATCTCxxTATTCACAG...............	20	1	7.00	0.00	4.00	2.00	1.00
................................................................TCTCGCATCTCTATATTCACAG...............	22	1	6.00	0.00	1.00	3.00	2.00
..................................................................TCACATCTCTATATTCACAG...............	20	1	6.00	0.00	2.00	2.00	2.00
................................................................TCTCACATCTCTATACTCACAG...............	22	1	6.00	0.00	1.00	3.00	2.00
................................................................TCTCACATCTCTTTATTCACAG...............	22	1	5.00	0.00	0.00	1.00	4.00
................................................................TCTCATATCTCTATATTCACAG...............	22	1	5.00	0.00	1.00	2.00	2.00
................................................................TCTCACATCTCTCTATTCACAG...............	22	1	5.00	0.00	0.00	0.00	5.00
................................................................TCTCACATCTCTATATTCACAT...............	22	1	5.00	0.00	4.00	0.00	1.00
................................................................TCTCAAATCTCTATATTCACA................	21	1	4.00	0.00	0.00	4.00	0.00
................................................................TCTCACATCTATATATTCACAG...............	22	1	4.00	0.00	0.00	2.00	2.00
...............GTGAGTATC-GGGTTGTGATT.................................................................	20	1	4.00	1.00	2.00	0.00	1.00
................................................................TCTCACATCTCTATATTCATAG...............	22	1	4.00	0.00	2.00	0.00	2.00
................................................................TCTCACATTTCTATATTCACAG...............	22	1	4.00	0.00	2.00	2.00	0.00
................................................................TCTCACACCTCTATATTCACAG...............	22	1	4.00	0.00	2.00	2.00	0.00
................................................................TCTCACATCCCTATATTCACAG...............	22	1	4.00	0.00	1.00	0.00	3.00
................................................................TCTCACATCTCTATATTTACAG...............	22	1	4.00	0.00	1.00	0.00	3.00
................................................................TCTCACATCTCTATGTTCACAG...............	22	1	3.00	0.00	1.00	1.00	1.00
................................................................TCTCACATCTCTATATTCACCG...............	22	1	3.00	0.00	2.00	1.00	0.00
................................................................TCTCACATCTCTATATTCACAGTT.............	24	1	3.00	0.00	0.00	3.00	0.00
................................................................TCTCACATCTCTACATTCACAG...............	22	1	3.00	0.00	2.00	1.00	0.00
................................................................TCTCCCATCTCTATATTCACAG...............	22	1	3.00	0.00	2.00	1.00	0.00
................................................................CCTCACATCTCTATATTCACAGT..............	23	1	3.00	0.00	3.00	0.00	0.00
................................................................TCTCACATCTCTATATTCGCAG...............	22	1	3.00	0.00	3.00	0.00	0.00
................................................................CCTCACATCTCTATATTCACA................	21	1	3.00	0.00	0.00	3.00	0.00
................................................................TCTCACATCTCTATATTAACAG...............	22	1	3.00	0.00	0.00	3.00	0.00
.................................................................CTCACATCTCTATATTCACAGT..............	22	1	3.00	2.00	0.00	0.00	1.00
................................................................TCTAACATCTCTATATTCACA................	21	1	3.00	0.00	2.00	1.00	0.00
................................................................TCTCACATCTCTATATTCACAGAA.............	24	1	3.00	0.00	1.00	0.00	2.00
................................................................TCTCACATATCTATATTCACAG...............	22	1	3.00	0.00	1.00	2.00	0.00
................................................................TCTCACATCTCTATATCCACAG...............	22	1	3.00	0.00	2.00	1.00	0.00
...............GTGAGTATC-GGGCTGTGATTGG...............................................................	22	1	3.00	0.00	1.00	2.00	0.00
................................................................TATCACATCTCTATATTCACA................	21	1	3.00	0.00	0.00	3.00	0.00
................................................................TCTCACCTCTCTATATTCACAG...............	22	1	3.00	0.00	3.00	0.00	0.00

droVir3

AAAGCTGCGTCGTAGGTGAGTAAT-CAGTTGTGGGTGGCTTT---TT--------G-AAAGCCCTCTCACATCTCTTTATTCACAGGCGGCGTGAGTTGCG	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
................................................................TCTCACATCTCTTTATTCACAG...............	22	1	1168.00	38.00	204.00	38.00	124.00	764.00
...............GTGAGTAAT-CAGTTGTGGGTGG...............................................................	22	1	872.00	683.00	78.00	109.00	1.00	1.00
................................................................TCTCACATCTCTTTATTCACA................	21	1	305.00	20.00	196.00	20.00	6.00	63.00
................................................................TCTCACATCTCTTTATTCACAGT..............	23	1	128.00	55.00	52.00	5.00	7.00	9.00
...............GTGAGTAAT-CAGTTGTGGGTG................................................................	21	1	67.00	29.00	7.00	21.00	7.00	3.00
................................................................TCTCACATCTCTTTATTCAC.................	20	1	64.00	0.00	35.00	1.00	1.00	27.00
...............GTGAGTAAT-CAGTTGTGGGTGGT..............................................................	23	1	47.00	31.00	1.00	15.00	0.00	0.00
...............GTGAGTAAT-CAGTTGTGGGTGT...............................................................	22	1	24.00	18.00	1.00	5.00	0.00	0.00
...............GTGAGTAAT-CAGTTGTGGGTGGC..............................................................	23	1	18.00	13.00	1.00	4.00	0.00	0.00
................................................................TCTCACATCTCTTTATTCACC................	21	1	16.00	0.00	1.00	0.00	8.00	7.00
...............GTGAGTAAT-CAGTTGTGGGTTG...............................................................	22	1	15.00	1.00	1.00	13.00	0.00	0.00
................................................................TCTCACATCTCTTTATTCACAC...............	22	1	15.00	0.00	0.00	0.00	1.00	14.00
.................................................................CTCACATCTCTTTATTCACAGT..............	22	1	13.00	7.00	5.00	0.00	0.00	1.00
...............GTGAGTAAT-CAGTTGTGGGTGGA..............................................................	23	1	11.00	9.00	0.00	2.00	0.00	0.00
...............GTGAGTAAT-CAGTTGTGGGTGA...............................................................	22	1	9.00	6.00	1.00	2.00	0.00	0.00
...............GTGAGTAAT-CAGTTGTGGGT.................................................................	20	1	8.00	6.00	1.00	1.00	0.00	0.00
................................................................TCTCACATCTCTTTATTCCCAG...............	22	1	7.00	0.00	0.00	0.00	0.00	7.00
................................................................TCTCACATCTCTTTATTCA..................	19	1	7.00	0.00	3.00	1.00	0.00	3.00
................................................................TCTCACATCTCTTTATTC...................	18	1	6.00	0.00	0.00	0.00	0.00	6.00
................TGAGTAAT-CAGTTGTGGGTGGA..............................................................	22	1	6.00	5.00	1.00	0.00	0.00	0.00
...............GTGAGTAAT-CAGTTGCGGGTGG...............................................................	22	1	5.00	4.00	1.00	0.00	0.00	0.00
...............GTGAGTAAT-CAGTCGTGGGTGG...............................................................	22	1	5.00	4.00	0.00	1.00	0.00	0.00
...............GTGAGTAAT-CAGTTGTGTGTGG...............................................................	22	1	5.00	3.00	0.00	2.00	0.00	0.00
................TGAGTAAT-CAGTTGTGGGTGG...............................................................	21	1	4.00	3.00	0.00	1.00	0.00	0.00
...............GTGGGTAAT-CAGTTGTGGGTGG...............................................................	22	1	4.00	2.00	1.00	1.00	0.00	0.00
................................................................TCTCACATCTCTTTATTCACAT...............	22	1	4.00	0.00	1.00	3.00	0.00	0.00
...............GTGAGTAAT-CAGTTGTGGGTGGTC.............................................................	24	1	4.00	4.00	0.00	0.00	0.00	0.00
................................................................TCTCACATCTCTTTCTTCACA................	21	1	3.00	0.00	3.00	0.00	0.00	0.00
................................................................TCTCACAGCTCTTTATTCACA................	21	1	3.00	0.00	3.00	0.00	0.00	0.00
...............GTGAGTAAT-CAGTTGTGGG..................................................................	19	1	3.00	1.00	0.00	1.00	0.00	1.00
................................................................TCTCACATATCTTTATTCACAG...............	22	1	3.00	0.00	1.00	0.00	1.00	1.00
...............GTGAGTAAT-CAGTTGTTGGTGG...............................................................	22	1	3.00	0.00	0.00	3.00	0.00	0.00
...............GTGAGTAAT-CAGTTGTGGTTGG...............................................................	22	1	3.00	1.00	1.00	1.00	0.00	0.00
...............GTGAGTAAT-CAGTTGTGGGGGG...............................................................	22	1	3.00	2.00	0.00	1.00	0.00	0.00
................................................................TCTCACATCTCTTTATTCACAGTT.............	24	1	3.00	2.00	1.00	0.00	0.00	0.00
................................................................TCTCACATCTCTTTATTCACAGA..............	23	1	3.00	1.00	0.00	1.00	0.00	1.00
................................................................TCTCACATCTCCTTATTCACA................	21	1	3.00	0.00	2.00	1.00	0.00	0.00
................................................................TCCCACATCTCTTTATTCACAG...............	22	1	3.00	0.00	0.00	0.00	0.00	3.00

droMoj3

CAAGCTGCGGCGCAGGTGAGTAAT-CAGTTGTGGGTGGCTCT---AG--------T-GAAGCCCTCTCACATCTCTTTATTCACAGGCGGCGAGAGTTGCG	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
................................................................TCTCACATCTCTTTATTCACAG...............	22	1	1272.00	42.00	325.00	282.00	623.00
...............GTGAGTAAT-CAGTTGTGGGTGG...............................................................	22	1	1042.00	726.00	49.00	23.00	244.00
................................................................TCTCACATCTCTTTATTCACA................	21	1	543.00	20.00	83.00	67.00	373.00
................................................................TCTCACATCTCTTTATTCACAGT..............	23	1	329.00	59.00	134.00	95.00	41.00
...............GTGAGTAAT-CAGTTGTGGGTGGT..............................................................	23	1	133.00	118.00	4.00	2.00	9.00
...............GTGAGTAAT-CAGTTGTGGGTG................................................................	21	1	89.00	49.00	4.00	8.00	28.00
................................................................TCTCACATCTCTTTATTCAC.................	20	1	83.00	0.00	17.00	17.00	49.00
...............GTGAGTAAT-CAGTTGTGGGTGT...............................................................	22	1	68.00	49.00	3.00	3.00	13.00
...............GTGAGTAAT-CAGTTGTGGGTGGC..............................................................	23	1	27.00	25.00	0.00	0.00	2.00
.................................................................CTCACATCTCTTTATTCACAGT..............	22	1	26.00	6.00	9.00	4.00	7.00
...............GTGAGTAAT-CAGTTGTGGGT.................................................................	20	1	22.00	20.00	1.00	1.00	0.00
................................................................TCTCACATCTCTTTATTCA..................	19	1	17.00	0.00	7.00	3.00	7.00
...............GTGAGTAAT-CAGTTGTGGGTGGA..............................................................	23	1	16.00	15.00	1.00	0.00	0.00
................................................................TCTCACATCTCTTTATTCACAGTT.............	24	1	15.00	0.00	4.00	9.00	2.00
...............GTGAGTAAT-CAGTTGTGGGTGGTT.............................................................	24	1	14.00	14.00	0.00	0.00	0.00
................................................................TCTCACATCTCTTTATTCACAGTC.............	24	1	13.00	3.00	5.00	4.00	1.00
................................................................TCTCACATCTCTTTATTCACCG...............	22	1	10.00	0.00	1.00	3.00	6.00
................................................................TCTCACATCTCTTTATTCACAT...............	22	1	10.00	0.00	3.00	5.00	2.00
..................................................................TCACATCTCTTTATTCACAG...............	20	1	9.00	0.00	3.00	2.00	4.00
...............GTGAGTAAT-CAGTTGTGGGTT................................................................	21	1	8.00	5.00	0.00	0.00	3.00
................................................................TCTCACATCTCTTTCTTCACAG...............	22	1	8.00	0.00	2.00	5.00	1.00
................TGAGTAAT-CAGTTGTGGGTGGT..............................................................	22	1	8.00	7.00	0.00	0.00	1.00
...............GTGAGTAAT-CAGTTGTGGGTGGTC.............................................................	24	1	8.00	8.00	0.00	0.00	0.00
...............GTGAGTAAT-CAGTTGTGGGTTG...............................................................	22	1	7.00	0.00	0.00	7.00	0.00
................................................................TCTCACATATCTTTATTCACAG...............	22	1	7.00	0.00	0.00	3.00	4.00
................................................................TCTCACATCTCTTTATTCACAC...............	22	1	7.00	0.00	2.00	0.00	5.00
.................................................................CTCACATCTCTTTATTCACAG...............	21	1	6.00	1.00	2.00	2.00	1.00
................................................................TCTCACATCTCTTTATTCACAGC..............	23	1	6.00	0.00	3.00	0.00	3.00
................................................................TCTCACATCTCTATATTCACAG...............	22	1	6.00	0.00	2.00	1.00	3.00
................................................................CCTCACATCTCTTTATTCACAG...............	22	1	5.00	0.00	4.00	1.00	0.00
................TGAGTAAT-CAGTTGTGGGTGG...............................................................	21	1	4.00	1.00	1.00	0.00	2.00
................................................................TATCACATCTCTTTATTCACAG...............	22	1	4.00	0.00	3.00	0.00	1.00
..................................................................TCACATCTCTTTATTCACA................	19	1	4.00	0.00	0.00	0.00	4.00
...............GTGAGTAAT-CAGTTGTGGGTGA...............................................................	22	1	4.00	4.00	0.00	0.00	0.00
................TGAGTAAT-CAGTTGTGGGTGGA..............................................................	22	1	4.00	2.00	0.00	0.00	2.00
................................................................TCTCACATCTCTTTCTTCACA................	21	1	3.00	0.00	0.00	1.00	2.00
.................................................................CTCACATCTCTTTATTCACAGTT.............	23	1	3.00	0.00	1.00	2.00	0.00
...............GTGAGTAAT-CAGTTGTGGG..................................................................	19	1	3.00	3.00	0.00	0.00	0.00
................................................................TCTCACATCTCTTTATTCACGG...............	22	1	3.00	0.00	0.00	1.00	2.00
................................................................TCTCATATCTCTTTATTCACA................	21	1	3.00	0.00	0.00	0.00	3.00
...............GTGAGTAAT-CAGTTGTGGGTGGCT.............................................................	24	1	3.00	2.00	0.00	0.00	1.00
................................................................TCTCACATCTCTTTGTTCACAG...............	22	1	3.00	0.00	0.00	2.00	1.00
................................................................TCTCACATCTATTTATTCACAG...............	22	1	3.00	0.00	0.00	1.00	2.00
................................................................TCTCACATCTCTTTATTCCCAG...............	22	1	3.00	0.00	1.00	2.00	0.00
...............GTGAGTAAT-CAGTTGTGGGTGTA..............................................................	23	1	3.00	0.00	0.00	0.00	3.00
................................................................TCTCAAATCTCTTTATTCACAG...............	22	1	3.00	0.00	0.00	0.00	3.00
................................................................TCTCACATCGCTTTATTCACAG...............	22	1	3.00	0.00	2.00	0.00	1.00
...............GTGAGTAAT-CAGTTGTGGGTGTC..............................................................	23	1	3.00	3.00	0.00	0.00	0.00
................................................................TATCACATCTCTTTATTCACA................	21	1	3.00	0.00	0.00	0.00	3.00
................................................................TCTCACATATCTTTATTCACA................	21	1	3.00	0.00	0.00	0.00	3.00
................................................................TATCACATCTCGTTATTCACAG...............	22	1	3.00	0.00	1.00	1.00	1.00
................................................................TCTCACATCTCTTTCTTCACAGT..............	23	1	3.00	0.00	0.00	3.00	0.00
................................................................TCTCACATCTCTCTATTCACAG...............	22	1	3.00	0.00	0.00	1.00	2.00
................................................................TCTCGCATCTCTTTATTCACA................	21	1	3.00	0.00	1.00	1.00	1.00
...............GTGAGTAAT-CAGTTGTGGGTGGTA.............................................................	24	1	3.00	0.00	1.00	0.00	2.00
................................................................TCTCACATCTCGTTATTCACAG...............	22	1	3.00	0.00	0.00	1.00	2.00
................................................................TCCCACATCTCTTTATTCACAG...............	22	1	3.00	0.00	0.00	2.00	1.00
...............GTGAGTAAT-CAGTTGTGGGTGC...............................................................	22	1	3.00	2.00	1.00	0.00	0.00

droGri2

GAAATTGCGGCGCAGGTGAGTAAT-CAGTTGTGGGTGGCTTT---TGTTCTTAGGG-AAAGCCCTCTCACATCTCTTTATTCACAGGCGGCGCGAATTGCG	Size	Hit Count	Total Norm	V109 Male body
...............GTGAGTAAT-CAGTTGTGGGTGG...............................................................	22	1	77.00	77.00
................................................................TCTCACATCTCTTTATTCACAG...............	22	1	4.00	4.00
...............GTGAGTAAT-CAGTTGTGGGT.................................................................	20	1	3.00	3.00
...............GTGAGTAAT-CAGTTGTGGGTGT...............................................................	22	1	3.00	3.00
...............GTGAGTAAT-CAGTTGTGGGTG................................................................	21	1	2.00	2.00
...............GTGAGTAAT-CAGTTGTGGGTGGC..............................................................	23	1	2.00	2.00
................................................................TCTCACATCTCTTTATTCACA................	21	1	2.00	2.00
................................................................TCTCACATCTCTTTATTCACAGT..............	23	1	2.00	2.00
...............GTGAGTAAT-CAGTTGTGGGTTT...............................................................	22	1	2.00	2.00
...............GTGAGTAAC-CAGTTGTGGGTGG...............................................................	22	1	2.00	2.00
...............GTGAGTAAT-CAGTTGTGTGTGG...............................................................	22	1	1.00	1.00
...............GTGAGTAAT-CAGTTGTGGGTT................................................................	21	1	1.00	1.00
...............GTGAGTAAT-CAGTTGTGGGTGGA..............................................................	23	1	1.00	1.00
...............GTGAGTCAT-CAGTTGTGGGTGG...............................................................	22	1	1.00	1.00
...............GTGAGTAAT-CAGTTGTGGGTGTA..............................................................	23	1	1.00	1.00
................TGAGTAAT-CAGTTGTGGGTGG...............................................................	21	1	1.00	1.00
...............GTGAGTAAT-CAGTTGTGGGTGGCA.............................................................	24	1	1.00	1.00
................TGAGTAAT-CAGTTGTGGGTGGT..............................................................	22	1	1.00	1.00
...............GTGAGTAAT-CAGTTGTGGG..................................................................	19	1	1.00	1.00
................TGAGTAAT-CAGTTGTGGGTGGAT.............................................................	23	1	1.00	1.00
...............GTGAGTAAT-CAGTTGTGAGTGT...............................................................	22	1	1.00	1.00
...............GTGAGCAAT-CAGTTGTGGGTGG...............................................................	22	1	1.00	1.00
................................................................TCCCACATCTCTTTATTCACAG...............	22	1	1.00	1.00
.................................................................CTCACATCTCTTTATTCACAGT..............	22	1	1.00	1.00
.................................................................CTCACATCTCTTTATTCACAG...............	21	1	1.00	1.00
...............TTGAGTAAT-CAGTTGTGGGTGG...............................................................	22	1	1.00	1.00

Generated: 04/20/2012 at 05:22:10 EDT

dme-mir-1003

chr3R:20484327-20484382 +

Known_mirbase

mirtron

20-way Fast Statistical Aligner (FSA) re-alignment

Visually pleasing best hits from LASTZ and MAF

Legend

Re-alignment after removal of non-confident orthologs

20-way Secondary Structure

Small RNA-seq read pileup