block2035391- 12- and 20-way alignments

block2035391	chr3R:4777401-4777494 -	Candidate
	[View on UCSC Genome Browser {Cornell Mirror}]	three_prime_UTR

Legend:

   mature strand at position 4777417-4777438
   star strand at position 4777452-4777478
   mutations
   read mismatches
   coordinate mismatch (possible incorrect ortholog)

12-way Fast Statistical Aligner re-alignment (From MAFs)

Species	Coordinate	Alignment
dm3	chr3R:4777386-4777509 -	A-----------------AGCCACAAAATTCTCTAGGATTTAAAAACTC----------------TTGAAAATGTGC-------------------------------------------------------------CTAAGTG-----------------------------------------------TATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGA-----------------------------AATCACTAAAAGCCTTAAATATTGTT
droSim1	chr3R_random:312343-312466 -	G-----------------TACCACCGAAGTCTCTAGGATTTAAAAACTC----------------TTGAAAATGTGC-------------------------------------------------------------CTAAGTG-----------------------------------------------TATGCAATACTATATATACATACTTTGCAGCGTTTCAAGTGATTTCA-----------------------------AATCACTAAAAGCCTTAAATATTGTT
droSec1	super_0:17102132-17102255 +	G-----------------AGCCACCGAAGTCTCTAGGATTTAAAAACTC----------------TTGAAAATGTGC-------------------------------------------------------------CTAAGTG-----------------------------------------------TATGCAATACTATATATACATACTTTGCAGCTTTTCAAGTGATTTCA-----------------------------AATCACTAAAAGCCTTAAATATTGTT
droYak2	chr3R:8821825-8821935 -	A-----------------AGCCACAGAAGTCTCTAGGATTTAAAAACTC----------------TTGAAAATGTGC-------------------------------------------------------------CTAAGTG-----------------------------------------------TAT-------------TACATACTATGCAGCTTTTCAAGTGATTTCA-----------------------------AATCACTAAAAGCCTTAAATATTGTT
droEre2	scaffold_4770:16826046-16826169 +	A-----------------AGCCACAGAAGTCTCTAGGATTTAAAAACTC----------------TTGAAAATGTGC-------------------------------------------------------------CTAAGTG-----------------------------------------------TATGCAATACTACATATACATACTGTGCAGCTTTTCAAGTGATTTCA-----------------------------AATCACTAAAAGCCTTAAATATTGTT
droAna3	scaffold_12916:7641049-7641176 +	TTTAATTTTTTATTTTCTAGTCAGAATTTTCTCCGAAAAACGAGAAAAT----------------TAAAAAATTACA-------------------TTTATA-ATTCGTACAAAAAAAAAAACA-----------------------------------------------------------------------------------------ATTTTGAAACTCTAC--CCGATT--------------------------------------TGAAAACATTTAAAAGTGTT
dp4	Unknown	------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer1	Unknown	------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil1	scaffold_180955:965285-965425 +	A-----------------AAACTCATCATTTTCCAAATTCAAAATGCACTCAGAAA-----------AAAAATTCGAATACAATTACGAAACGATTCATATACATATGTACATACATATATGCTTATATGAAATTTATCTAAATTA-----------------------------------------------------------------------------------------------------------------------------TAATTCAAAATTCGAATTTGGTT
droVir3	Unknown	------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3	scaffold_6680:13491371-13491505 +	A-----------------CCA--CCAAGTTGGCATGCCTGCAAAT----------------------GCAAAGTCGT-------------------------------------------------------------CTAAGTCGTTGCTATGAAGCCAAAGTTTGTTTTGTTTAGGCAACCGAAAAGttttTTTtttttttgtTtttttttttTtTTttgtTtTTTtttT---------------------------------------------------------tTtTT
droGri2	scaffold_14830:3074000-3074163 +	G-----------------TAAT--CAACG-CTCCATAACTAATA-TCATTTAAAAAGAAGATAATTTGAAGATTTGA-------------------------------------------------------------ATAATTT-----------------------------------------------TTCTTATACTTACTCTTATACGCTCTTTAACTCTTTACTCAACAATAAATGAATTTTGTAAAATATGAAACTGCATAGCCTTTAAAAGACTTGATC-AAATT

20-way Fast Statistical Aligner re-alignment (Top LASTZ hits)

Species	Coordinate	Lastz Id	Alignment
dm3	chr3R:4777386-4777509 -	NA	AAGCC--ACA----------------------------------AAA----TTCT--CTAGG-ATTTAAAAACTCT-------TGAAAATGTGCCTAAGTGTA-----------------TGGAATG-----------------------------CTATATATACATACTT---------TGCAGCTTT------------------------TCAAGTGATTTGAAATCACTAAAAG-CC----------------TTAAATATTGTT
droSim1	chr3R_random:312343-312466 -	202	GTACC--ACC----------------------------------GAA----GTCT--CTAGG-ATTTAAAAACTCT-------TGAAAATGTGCCTAAGTGTA-----------------TGCAATA-----------------------------CTATATATACATACTT---------TGCAGCGTT------------------------TCAAGTGATTTCAAATCACTAAAAG-CC----------------TTAAATATTGTT
droSec1	super_0:17102132-17102255 +	12	GAGCC--ACC----------------------------------GAA----GTCT--CTAGG-ATTTAAAAACTCT-------TGAAAATGTGCCTAAGTGTA-----------------TGCAATA-----------------------------CTATATATACATACTT---------TGCAGCTTT------------------------TCAAGTGATTTCAAATCACTAAAAG-CC----------------TTAAATATTGTT
droYak2	chr3R:8821825-8821935 -	236	AAGCC--ACA----------------------------------GAA----GTCT--CTAGG-ATTTAAAAACTCT-------TGAAAATGTGCCTAAGTGTA-----------------T------------------------------------------TACATACTA---------TGCAGCTTT------------------------TCAAGTGATTTCAAATCACTAAAAG-CC----------------TTAAATATTGTT
droEre2	scaffold_4770:16826046-16826169 +	71	AAGCC--ACA----------------------------------GAA----GTCT--CTAGG-ATTTAAAAACTCT-------TGAAAATGTGCCTAAGTGTA-----------------TGCAATA-----------------------------CTACATATACATACTG---------TGCAGCTTT------------------------TCAAGTGATTTCAAATCACTAAAAG-CC----------------TTAAATATTGTT
droEug1	scf7180000409467:702681-702800 +	46	AACCC--TCG----------------------------------TAA----GGGT--TTAGTGATTAAAAAGTTCT-------TGAAACTGCGCCTAAGGATG-----------------TGCAATG--------------------------------TATGT-----TTG---------AGCAGCTTT------------------------TCAAGGCATTTAAAATCATTAAAAT-TA-------------ATAGCAAATGAGGTT
droBia1	scf7180000302402:7483054-7483157 -	317	AAGTC--ACT----------------------------------CAA----ATCT--CTAGGGATTTCAAATCTCC-------TGAAATTGTGCCTTAATGTA------------------GCAATG----------------------------------------TTTTT---------TGCAGCTAT------------------------TCTAGT---------TCACCAAAAA-CC----------------CTAGAAATTGTT
droTak1	scf7180000415653:147145-147268 +	79	AAGCC--ACG----------------------------------AATAATAAGAT--ACAGG-GTGTTTAAACTCTAAACTACGTAGGATGGGTC----------------------------GATTTGAGTCGG----------------------TGCATTAAAGTTATC---------TAAGCCATT-----------------------------TAGTCTG-AATCA-TATATA-TA----------------TTTTATATTATC
droEle1	scf7180000491011:146343-146464 +	62	AAATG--GCA----------------------------------AATGCTAATTT--ATGAG-G-TTGTAAACTTT-------TATAAATGTCGT-AAATCTT-----------------TCATA-A---------------------------CAAGC----TCTATGATA---------TATGGCTGT------------------------TTAAATA---TCAAACAACTAT---------------TTAGATATAAAACAGGGCT
droRho1	scf7180000779309:21519-21643 +	70	GTGCC--ACA----------------------------------GAA----ATCA--CTTGGTTTTTGAAATCTCT-------TTTAAAAGTGTGCAAAAGTA-----------------TGCAACA-----------------------------ATATATGTTAAGTTCA---------GGAGTCCGT------------------------TAGATTCATTTAGTAACACGACTTT-AC----------------TTAAGATACATA
droFic1	scf7180000453493:153900-154030 -	225	CTGCC--GTA----------------------------------AAAA---TTCC--CTTAA-ATTCAAAAAACA---------GA-AGATTAAGTGATTGTA-----------------TTAGAAT-----------------------------TTATCCAATATACACT-TAATGCTATCCG-ATTTTGAATTTACTGGAGATTTCTGT-------------GG---CA-----CG-CC----------------TTAACTTTCG-C
droKik1	scf7180000302471:78852-78973 -	225	AATTACCTTC----------------------------------GTA----GTCT--CGAGTGTTTTGTAATCTCT-------CGAAAAGTTGTATAAGTGTT-----------------TGGAATT-----------------------------CTATATTTTTATAATT---------TAATATAGT-----------------------------TAATTTGTAATTTTAAAAAA-TT----------------ATTCTTAGCATT
droAna3	scaffold_13248:2394513-2394634 +	64	TAGTG--GCA----------------------------------GGA----TACT--AGAGG-ATTAAAAAACTTC-------ACAGAATACATTTTCTTTTA-----------------AGAAAAG----TTGGAATTTTTAGA---------TTAG---------CTTTT---------TGTTTTAAA---------------------------------CAAATTATATTTGAAA-CT----------------ATGGGTTCTATC
droBip1	scf7180000396429:87234-87334 +	49	TAAAA--ATT----------------------------------GAA----GA------------------AATAA-------TAATAATGTGAAAA-------------------------AAATA-----------------------------ATAAATAAAAATAATT---------TAAATATTT------------------------TAAAACATTTTGAAATAATAAAGTT-AA----------------AAAAATTAAATA
dp4	chr3:17930285-17930408 -	278	ACC----AACACAATTTTTGAATATTTTGGGAAAATACTAGAAA-------TGGT--ATAAATACT----------A-----------------------------------AAAAGAAA------G---AT-AGAAA-------TACCATTCT------------------------------------AGAAATTGTCTCTGAATTCTTT-------------GG---TATC----CCAG----------------TTAATTTTGGTT
droPer1	super_73:125535-125658 +	182	ACC----AACACAATTTTTGAACATTTTGGGAAAATACTAGAAA-------TGGT--ATAAATACT----------A-----------------------------------AAAAGAAA------G---AT-AGAAA-------TACCATTCT------------------------------------AGAAATTGTCTCTGAATTCTTT-------------GG---TATC----CCAG----------------TTAATTTTGGTT
droWil1	scaffold_181130:13457303-13457435 -	206	AAGGC--GCA----------------------------------CAG----TTCT--TCAGCAATTT---------------------------TCAGGCGAATGAAATGTTTTG-----TAAAG----AATTGG------------------------TATATAAATACCTACAA----ATGGAATTTT------------------------TCAA------TTAAACGGCCAAGAG-CCCAAAAATAAATAAATATAGACTAATATT
droVir3	scaffold_12875:4361310-4361428 +	55	AAACC--AGA---ACGTA---------------------------AA----AGCT--T--TA-TTGTAAAATGCAC-------TGAAAATGCGGCAAAGCAGA-----------------TAA-A--------------------------------TATATATTTATATAT---------AGGAACTAC------------------------TGA--TTATATAAAGGAAGGAATCA-CG----------------TTAAACA-TATT
droMoj3	scaffold_6496:24941044-24941173 -	547	AATGA--TGG---TCACT--------------------------TGA----TTTTCAAGCTG-ATTT----ATGCA-------TCAAAATTATTCAAAGAGTA-----------------GGCA-CG-----------------------------CGATATATACATACATATAT----ATGCATATAT------------------------ATACGTGTGTATATAT-AGACATAA-CT----------------TTAGATTTTTAG
droGri2	scaffold_14822:484637-484751 -	270	GGACG--GAA----------------------------------GTG----CTT------CC-TTCTATATACTCT-------TT-AATAGCGCGTAGCTGTG-------------------AAA-A-----------------------------GTAAGCATG--TATTT---------TGTGGTGAT----------------TTTTGCAA-GGATATTTCTCAAATCAATGAA---------------------TTAA--TTTGCT

[View All Possible Orthologs]

Original 12-way multiz alignment with reads super-imposed

Species

Alignment

dm3

A-----------------AGCCACAAAATTCTCTAGGATTTAAAAACTC----------------TTGAAAATGTGC-------------------------------------------------------------CTAAGTG-----------------------------------------------TATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGA-----------------------------AATCACTAAAAGCCTTAAATATTGTT

Size

Hit Count

Total Norm

droSim1

G-----------------TACCACCGAAGTCTCTAGGATTTAAAAACTC----------------TTGAAAATGTGC-------------------------------------------------------------CTAAGTG-----------------------------------------------TATGCAATACTATATATACATACTTTGCAGCGTTTCAAGTGATTTCA-----------------------------AATCACTAAAAGCCTTAAATATTGTT	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
......................................TTTAAAACCGC----------------TTGAAAATG............................................................................................................................................................................................................................	20	1	1.00	0.00	0.00	0.00	1.00

droSec1

G-----------------AGCCACCGAAGTCTCTAGGATTTAAAAACTC----------------TTGAAAATGTGC-------------------------------------------------------------CTAAGTG-----------------------------------------------TATGCAATACTATATATACATACTTTGCAGCTTTTCAAGTGATTTCA-----------------------------AATCACTAAAAGCCTTAAATATTGTT	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
.......................................TTAAAACCGC----------------TTGAAAATG............................................................................................................................................................................................................................	19	1	4.00	0.00	4.00	0.00
......................................TTTAAAACCGC----------------TTGAAAATG............................................................................................................................................................................................................................	20	1	4.00	0.00	4.00	0.00
....................................................................................................................................................................................................................TACTTTGCAGCTTTTCAAGTGA............................................................	22	1	4.00	0.00	4.00	0.00
.......................................TTAAAACCGC----------------TTGAAAAT.............................................................................................................................................................................................................................	18	1	1.00	0.00	1.00	0.00
..............................................................................................................................................................................................................................CTTTTCAAGTGTTTTAA-----------------------------A.........................	18	1	1.00	0.00	1.00	0.00
......................................TTTAAAACCGC----------------TTGAAAA..............................................................................................................................................................................................................................	18	1	1.00	0.00	1.00	0.00

droYak2

A-----------------AGCCACAGAAGTCTCTAGGATTTAAAAACTC----------------TTGAAAATGTGC-------------------------------------------------------------CTAAGTG-----------------------------------------------TAT-------------TACATACTATGCAGCTTTTCAAGTGATTTCA-----------------------------AATCACTAAAAGCCTTAAATATTGTT	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
........................................TGAAAAGTC----------------TTGAAAATGT...........................................................................................................................................................................................................................	19	1	1.00	0.00	0.00	1.00	0.00	0.00

droEre2

A-----------------AGCCACAGAAGTCTCTAGGATTTAAAAACTC----------------TTGAAAATGTGC-------------------------------------------------------------CTAAGTG-----------------------------------------------TATGCAATACTACATATACATACTGTGCAGCTTTTCAAGTGATTTCA-----------------------------AATCACTAAAAGCCTTAAATATTGTT	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
..............................................................................................................................................................................................................................CTTTTCAAGTGTTTTAA-----------------------------AA........................	19	1	1.00	0.00	0.00	0.00	1.00
......................................................................AATGTAC-------------------------------------------------------------CTAAATG-----------------------------------------------TATG..................................................................................................	18	1	1.00	0.00	0.00	0.00	1.00
........................................TAAAACCGC----------------TTGAAAATG............................................................................................................................................................................................................................	18	1	1.00	0.00	0.00	0.00	1.00
....................................................................................................................................................................................................................TACTGTGCAGCTTTTCAAGTGA............................................................	22	1	1.00	0.00	0.00	0.00	1.00

droAna3

TTTAATTTTTTATTTTCTAGTCAGAATTTTCTCCGAAAAACGAGAAAAT----------------TAAAAAATTACA-------------------TTTATA-ATTCGTACAAAAAAAAAAACA-----------------------------------------------------------------------------------------ATTTTGAAACTCTAC--CCGATT--------------------------------------TGAAAACATTTAAAAGTGTT	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
...................................AAAAACxAGAAAAT----------------GAAAA................................................................................................................................................................................................................................	18	1	1.00	0.00	0.00	0.00	1.00
....................................................................................................................AAACAACA-----------------------------------------------------------------------------------------ATTTTGAAACA......................................................................	19	1	1.00	0.00	0.00	0.00	1.00
...........................................................................................................GGACAAAAAAAAAAAAA-----------------------------------------------------------------------------------------A................................................................................	18	13	0.08	0.00	0.00	0.00	0.08

dp4

------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

V112
Male body

V043
Embryo

V051
Head

M022
Male body

droPer1

Size

Hit Count

Total Norm

V111
Male body

V042
Embryo

V050
Head

V057
Head

M021
Embryo

droWil1

A-----------------AAACTCATCATTTTCCAAATTCAAAATGCACTCAGAAA-----------AAAAATTCGAATACAATTACGAAACGATTCATATACATATGTACATACATATATGCTTATATGAAATTTATCTAAATTA-----------------------------------------------------------------------------------------------------------------------------TAATTCAAAATTCGAATTTGGTT	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
........................................................................................AAACGATTTATATATATATGT.........................................................................................................................................................................................	21	1	2.00	1.00	1.00	0.00	0.00
................................................................................................CATATACATACATACATACATA................................................................................................................................................................................	22	1	1.00	0.00	0.00	0.00	1.00
...................................................................................................ATACACATATACATACATAT...............................................................................................................................................................................	20	1	1.00	0.00	1.00	0.00	0.00
..................................................................................................TATACATATGTATATACATGT...............................................................................................................................................................................	21	1	1.00	0.00	0.00	1.00	0.00
...................................................................................................GTATATATGTACATACATATA..............................................................................................................................................................................	21	1	1.00	0.00	1.00	0.00	0.00
.......................................................................................................ATATGTACATACGTATGT.............................................................................................................................................................................	18	1	1.00	0.00	1.00	0.00	0.00
.......................................................................................................ATATGTACATACATATATGATCA........................................................................................................................................................................	23	1	1.00	0.00	0.00	0.00	1.00
...................................................................................................AAAAATATGTACATACATAT...............................................................................................................................................................................	20	1	1.00	0.00	1.00	0.00	0.00
.........................................................................................AACGATTTATATATATATGT.........................................................................................................................................................................................	20	1	1.00	0.00	1.00	0.00	0.00
..............................................................................................................................GATGAAACTTATCTAAATT.....................................................................................................................................................	19	1	1.00	0.00	1.00	0.00	0.00
............................................................................................................TACATACATATATGCATATAT.....................................................................................................................................................................	21	1	1.00	0.00	1.00	0.00	0.00
...................................................................................TTACGAAAAGATTCATCT.................................................................................................................................................................................................	18	1	1.00	0.00	1.00	0.00	0.00

droVir3

Size

Hit Count

Total Norm

V116
Male body

V053
Unknown

V047
Embryo

M027
Male body

M028
Head

droMoj3

A-----------------CCA--CCAAGTTGGCATGCCTGCAAAT----------------------GCAAAGTCGT-------------------------------------------------------------CTAAGTCGTTGCTATGAAGCCAAAGTTTGTTTTGTTTAGGCAACCGAAAAGttttTTTtttttttgtTtttttttttTtTTttgtTtTTTtttT---------------------------------------------------------tTtTT	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
.........................................................................................................................................................................................AAAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT.........................................................................	36	2	4.00	0.00	0.00	0.50	3.50
........................................................................................................................................................................................AAAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT..........................................................................	36	2	4.00	0.00	0.00	0.50	3.50
.........................................................................................................................................................................................AAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT.........................................................................	36	1	4.00	0.00	1.00	0.00	3.00
.................................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT.................................................................	36	24	0.13	0.00	0.00	0.00	0.13
..........................................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT---------------------------------------------------------TTTTT	36	24	0.13	0.00	0.00	0.00	0.13
.........................................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT---------------------------------------------------------TTTTT	36	24	0.13	0.00	0.00	0.00	0.13
.....................................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT---------------------------------------------------------T....	36	24	0.13	0.00	0.00	0.00	0.13
......................................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT---------------------------------------------------------TT...	36	24	0.13	0.00	0.00	0.00	0.13
.......................................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT---------------------------------------------------------TTT..	36	24	0.13	0.00	0.00	0.00	0.13
...........................................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTTTTTTTTTT---------------------------------------------------------TTTTT	36	24	0.13	0.00	0.00	0.00	0.13
....................................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT---------------------------------------------------------.....	36	24	0.13	0.00	0.00	0.00	0.13
..............................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT....................................................................	36	24	0.13	0.00	0.00	0.00	0.13
.............................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT.....................................................................	36	24	0.13	0.00	0.00	0.00	0.13
........................................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT---------------------------------------------------------TTTT.	36	24	0.13	0.00	0.00	0.00	0.13
............................................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTTTTTTTTT---------------------------------------------------------TTTTT	36	24	0.13	0.00	0.00	0.00	0.13
................................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT..................................................................	36	24	0.13	0.00	0.00	0.00	0.13
..................................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT................................................................	36	24	0.13	0.00	0.00	0.00	0.13
...................................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT...............................................................	36	24	0.13	0.00	0.00	0.00	0.13
...............................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT...................................................................	36	24	0.13	0.00	0.00	0.00	0.13
............................................................................................................................................................................................................ATTTTTTTTTTTTTTTTTTTTTTTTTTT---------------------------------------------------------TTTT.	32	8	0.25	0.00	0.00	0.00	0.25
...............................................................................................................................................................................................................ATTTTTTTTTTTTTTTTTTTTTTTT---------------------------------------------------------TTTTT	32	8	0.25	0.00	0.00	0.00	0.25
...........................................................................................................................................................................................................ATTTTTTTTTTTTTTTTTTTTTTTTTTTT---------------------------------------------------------TTT..	32	8	0.25	0.00	0.00	0.00	0.25
............................................................................................................................................................................................ATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT..........................................................................	32	8	0.25	0.00	0.00	0.00	0.25
.............................................................................................................................................................................................................ATTTTTTTTTTTTTTTTTTTTTTTTTT---------------------------------------------------------TTTTT	32	8	0.25	0.00	0.00	0.00	0.25
..............................................................................................................................................................................................................ATTTTTTTTTTTTTTTTTTTTTTTTT---------------------------------------------------------TTTTT	32	8	0.25	0.00	0.00	0.00	0.25
.............................................................................................................................................................................................ATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT.........................................................................	32	8	0.25	0.00	0.00	0.00	0.25
...........................................................................................................................................................................................ATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT...........................................................................	32	8	0.25	0.00	0.00	0.00	0.25
.........................................................................................................................................................................................................................TTTGGTTTTTTTTTT---------------------------------------------------------TTATT	21	8	0.13	0.00	0.00	0.00	0.13
..............................................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTTT..................................................................	22	51	0.02	0.02	0.00	0.00	0.00
..............................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTTT..................................................................................	22	51	0.02	0.02	0.00	0.00	0.00
.........................................................................................................................................................................................AAATTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTT..........................................................................	35	1	1.00	0.00	0.00	0.00	1.00
.....................................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTTT...........................................................................	22	51	0.02	0.02	0.00	0.00	0.00
.............................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTTT...................................................................................	22	51	0.02	0.02	0.00	0.00	0.00
................................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTT.....................................................................	33	5	0.20	0.00	0.00	0.20	0.00
...............................................................................................................................................................................................................TTTTTTTGTTTTTTGTTTGTT..................................................................	21	12	0.08	0.08	0.00	0.00	0.00
............................................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTTT....................................................................	22	51	0.02	0.02	0.00	0.00	0.00
..............................................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTTTTTTT---------------------------------------------------------TTTCT	33	5	0.20	0.00	0.00	0.20	0.00
........................................................................................................................................................................................AAAAATTTTTTTTTTTTTTTTTTTTTTTTTTTTT............................................................................	34	1	1.00	0.00	0.00	0.00	1.00
............................................................................................................................................................................................GTTTTGTTTTTTATTGTTTTT.....................................................................................	21	2	0.50	0.00	0.50	0.00	0.00
.........................................................................................................................................................................................................................TTTCGTTTTTTTTTT---------------------------------------------------------TTTTT	22	5	0.20	0.00	0.20	0.00	0.00
..........................................................................................................................................................................................................TTTTTTTTTTTTTTCTTTTG........................................................................	20	12	0.08	0.00	0.00	0.08	0.00
..........................................................................................................................................................................................................................TTTCGTTTTTTTTT---------------------------------------------------------TTTTT	22	5	0.20	0.00	0.20	0.00	0.00
...................................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTTT.............................................................................	22	51	0.02	0.02	0.00	0.00	0.00
...................................................................................................................................................................................................TTGTTTTTGTTGTTTTTTTTT..............................................................................	21	12	0.08	0.08	0.00	0.00	0.00
.............................................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTTTTTTTT---------------------------------------------------------TTCTT	33	5	0.20	0.00	0.00	0.20	0.00
.......................................................................................................................................................................................................TTTCGTTTTTTTTTTTTTTTTC.........................................................................	22	5	0.20	0.00	0.20	0.00	0.00
........................................................................................................................................................................................AAAAAATTTTTTTTTTTTTGTTTTTTTTTTTTTTTT..........................................................................	36	1	1.00	0.00	0.00	0.00	1.00
.......................................................................................................................................................................................................................TTTTTTGTTTTTTTCTT---------------------------------------------------------TTGT.	21	6	0.17	0.17	0.00	0.00	0.00
........................................................................................................................................................................................................TTTGGTTTTTTTTTTTTATTT.........................................................................	21	8	0.13	0.00	0.00	0.00	0.13
.......................................................................................................................................................................................................TTTGGTTTTTTTTTTTTATTT..........................................................................	21	8	0.13	0.00	0.00	0.00	0.13
..................................................................................................................................................................................................TTTTTTTTTGTCTTTTTTTTTTTTTTTTTTTTTTTT................................................................	36	1	1.00	0.00	0.00	0.00	1.00
................................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTTT................................................................................	22	51	0.02	0.02	0.00	0.00	0.00
.............................................................................................................................................................................................TTTTTTTGTTTTTTGTTTGTT....................................................................................	21	12	0.08	0.08	0.00	0.00	0.00
.............................................................................................................................................................................................TTTTTTTTTTTTTTCTTTTG.....................................................................................	20	12	0.08	0.00	0.00	0.08	0.00
......................................................................................................................................................................................................................TTTTTTTGTTTTTTGTTT---------------------------------------------------------GTT..	21	12	0.08	0.08	0.00	0.00	0.00
........................................................................................................................................................................................AAAAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT..........................................................................	36	1	1.00	0.00	0.00	0.00	1.00
................................................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTTT................................................................	22	51	0.02	0.02	0.00	0.00	0.00
......................................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTTT..........................................................................	22	51	0.02	0.02	0.00	0.00	0.00
...............................................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTTT.................................................................	22	51	0.02	0.02	0.00	0.00	0.00
.................................................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTTT...............................................................	22	51	0.02	0.02	0.00	0.00	0.00
....................................................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTT---------------------------------------------------------TT...	22	51	0.02	0.02	0.00	0.00	0.00
.........................................................................................................................................................................................AAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT...........................................................................	34	2	0.50	0.00	0.50	0.00	0.00
.................................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTTT...............................................................................	22	51	0.02	0.02	0.00	0.00	0.00
.........................................................................................................................................................................................................................TTTTTTTTTTTTTTT---------------------------------------------------------TTTTT	22	51	0.02	0.02	0.00	0.00	0.00
..........................................................................................................................................................................................AAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT..........................................................................	34	2	0.50	0.00	0.50	0.00	0.00
...............................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTTT.................................................................................	22	51	0.02	0.02	0.00	0.00	0.00
.....................................................................................................................................................................................................................TTTTTTTTTTTTTTTTTTT---------------------------------------------------------TTT..	22	51	0.02	0.02	0.00	0.00	0.00
...................................................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTT---------------------------------------------------------T....	22	51	0.02	0.02	0.00	0.00	0.00
................................................................................................................................................................................................TTGTTTTTGTTGTTTTTTTTT.................................................................................	21	12	0.08	0.08	0.00	0.00	0.00
..................................................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTTT---------------------------------------------------------.....	22	51	0.02	0.02	0.00	0.00	0.00
............................................................................................................................................................................................................TTTTTTTTTTTTTTTTTGTTG.....................................................................	21	14	0.07	0.00	0.00	0.00	0.07
.............................................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTTT...................................................................	22	51	0.02	0.02	0.00	0.00	0.00
.......................................................................................................................................................................................................TTTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTT---------------------------------------------------------TTT..	36	2	0.50	0.00	0.00	0.00	0.50
..................................................................................................................................................................................................................TTGTTTTTGTTGTTTTTTTTT...............................................................	21	12	0.08	0.08	0.00	0.00	0.00
....................................................................................................................................................................................................TTTTTTTGTTTTTTGTTTGTT.............................................................................	21	12	0.08	0.08	0.00	0.00	0.00
.......................................................................................................................................................................................................................TTTTTTTTTTTTTTTTT---------------------------------------------------------TTTTT	22	51	0.02	0.02	0.00	0.00	0.00
.....................................................................................................................................................................................................................TTGTTTTTGTTGTTTTTTT---------------------------------------------------------TT...	21	12	0.08	0.08	0.00	0.00	0.00
......................................................................................................................................................................................................................TTTTTTTTTTTTTTTTTT---------------------------------------------------------TTTT.	22	51	0.02	0.02	0.00	0.00	0.00
..........................................................................................................................................................................................................................TTTGGTTTTTTTTT---------------------------------------------------------TTTAT	21	8	0.13	0.00	0.00	0.00	0.13
.........................................................................................................................................................................................AATTTTTTTTTTTTTTTTGTTTTTTTTTTTTTTTTT.........................................................................	36	2	0.50	0.00	0.50	0.00	0.00
........................................................................................................................................................................................................................TTTTTTTTTTTTTTTT---------------------------------------------------------TTTTT	22	51	0.02	0.02	0.00	0.00	0.00
.........................................................................................................................................................................................AAAGTTTTTTTTTTTTTTTTTTTTTTTTTTTCT............................................................................	33	1	1.00	0.00	0.00	0.00	1.00
.........................................................................................................................................................................................................TTTTTTTTTTTTTTTTTGTTG........................................................................	21	14	0.07	0.00	0.00	0.00	0.07
.......................................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTTT.........................................................................	22	51	0.02	0.02	0.00	0.00	0.00
.........................................................................................................................................................................................AAAGTTTTTTTTTTTTTTTTTTTTTTTTTTTC.............................................................................	32	1	1.00	0.00	0.00	0.00	1.00
....................................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTTT............................................................................	22	51	0.02	0.02	0.00	0.00	0.00
..................................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTT................................................................................	20	70	0.01	0.01	0.00	0.00	0.00
.....................................................................................................................................................................................................TTTTTTGTTTTTTTCTTTTGT............................................................................	21	6	0.17	0.17	0.00	0.00	0.00
..................................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTTT..............................................................................	22	51	0.02	0.02	0.00	0.00	0.00
............................................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTTTTTTTTT---------------------------------------------------------TCTTT	33	5	0.20	0.00	0.00	0.20	0.00
.........................................................................................................................................................................................AAAGTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTT..........................................................................	35	1	1.00	0.00	0.00	0.00	1.00
...........................................................................................................................................................................................................AATTTTTTTTTTTTTTTTGTTTTTTTTTT---------------------------------------------------------TTTTT	36	2	0.50	0.00	0.50	0.00	0.00
...............................................................................................................................................................................................................TTTTTTTTTTTTTTCTTTTG...................................................................	20	12	0.08	0.00	0.00	0.08	0.00

droGri2

G-----------------TAAT--CAACG-CTCCATAACTAATA-TCATTTAAAAAGAAGATAATTTGAAGATTTGA-------------------------------------------------------------ATAATTT-----------------------------------------------TTCTTATACTTACTCTTATACGCTCTTTAACTCTTTACTCAACAATAAATGAATTTTGTAAAATATGAAACTGCATAGCCTTTAAAAGACTTGATC-AAATT

Size

Hit Count

Total Norm

V109
Male body

12-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droAna3	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image							None	None		None
UNAFold Image							None	None		None

20-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droEug1	droBia1	droTak1	droEle1	droRho1	droFic1	droKik1	droAna3	droBip1	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image