Possible Orthologs for block2035391

droSim1 - 6 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

202

chr3R_random:312343-312466 -

90.45

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT GTACCACCGAAGTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGCAATACTATATATACATACTTTGCAGCGTTTCAAGTGATTTCAAATCACTAAAAGCCTTAAATATTGTT	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
.....................TTTAAAACCGCTTGAAAATG...................................................................................	20	1	1.00	0.00	0.00	0.00	1.00

chr3R:16544999-16545113 +

46.75

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAA-AATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT AGGACTTAAAATTTGAATTAATTTTTGATCTTACATAAAATG----TAAGTAATAACAATATAAGATAAAAAAACAG---TGTTTTTCATGCGAA---ATTCCACCACAAATTTAAATCAGAATT	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
AGGACTTAACATTTGAGT...........................................................................................................	18	1	3.00	0.00	2.00	1.00	0.00
..................................ATTAAATG----TGAGTAATAA.....................................................................	18	1	1.00	1.00	0.00	0.00	0.00
...........TTTGAATTAATTTTTGATG...............................................................................................	19	1	1.00	0.00	0.00	0.00	1.00

chrU:14729381-14729495 +

41.56

AAGCC---ACAAAATTCTCTAGGATTT------AAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT AACTCGATATAGCATTCTCTCTTGTTTTATTTGGAAAATGGTTGGCGACTTTTC------------------TACATATAATCTTGATGTTCTGTGTTGAAATTCAATTTCATTAAAGTCGGATGGGACGTTA	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
.......TATAGCATTCTCTCTTGTT...........................................................................................................	19	15	0.07	0.00	0.00	0.00	0.07

chr2R:8365541-8365678 +

37.8

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAA------------AAGCCTT--AAATATTGTT
TAGCATAACGCTACTTAATGCCATTGACACGTATGTAAATTTCCATGCATATTTAAGTTATCAGCGTAACGAAGTCAACAGCTTTTCACGAAAATCCCGACAGCAGAGGCAGCGGAAAAGCTCCTAGGGGGTGGTTTT

Size

Hit Count

Total Norm

V044
Embryo

M023
Head

M024
Male body

M025
Embryo

chr3R:26240957-26241057 +

36.89

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTAT---GGAATGCTATATATACATACTTTGCAGCTTTTCAAG---TGA-------TTTGA---AATCACTAAAAGCCTTAAATATTGTT
AT-----------------------------------AGTATACCTAATAATATTTAGGAATATTTTATATACACGC-----ATATTTCCGAGAAGTGATAATAGCTTTGAGTCAGTCACGACATGTCGAAAATATTGTT

Size

Hit Count

Total Norm

V044
Embryo

M023
Head

M024
Male body

M025
Embryo

189

chr3R:13251918-13251970 -

28.69

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
AATCGAAAAATCACTCTAGGGCTTAAAAGCATAAGGAAATGGGTATAAGTTTA-----------------------------------------------------------------------

Size

Hit Count

Total Norm

V044
Embryo

M023
Head

M024
Male body

M025
Embryo

droSec1 - 8 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

super_0:17102132-17102255 +

92.83

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT GAGCCACCGAAGTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGCAATACTATATATACATACTTTGCAGCTTTTCAAGTGATTTCAAATCACTAAAAGCCTTAAATATTGTT	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
......................TTAAAACCGCTTGAAAATG...................................................................................	19	1	4.00	0.00	4.00	0.00
.....................TTTAAAACCGCTTGAAAATG...................................................................................	20	1	4.00	0.00	4.00	0.00
.......................................................................TACTTTGCAGCTTTTCAAGTGA...............................	22	1	4.00	0.00	4.00	0.00
......................TTAAAACCGCTTGAAAAT....................................................................................	18	1	1.00	0.00	1.00	0.00
.................................................................................CTTTTCAAGTGTTTTAAA.........................	18	1	1.00	0.00	1.00	0.00
.....................TTTAAAACCGCTTGAAAA.....................................................................................	18	1	1.00	0.00	1.00	0.00

195

super_7:2384370-2384486 -

48.32

AAGCCACAAAATTCTCTAGGATTTA----AAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATA---TTGTT CAACAACAACAACGCCAAGGCCATTACAATAAGCTCTTAGGAAT---CGTAAGAGATTAGAGAGCT---------TGCTTTCCTCGTTGTTAAATGAT--AAACTTACTTTAACTCTTACTTAAGCGTGCC	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
............................................................................................AATGAT--AGACTTTCTTTA...................	18	1	1.00	0.00	0.00	1.00

super_1:10763431-10763554 +

47.75

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAAT--------------------------GTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT AAACTAAAGAGTTCTTTGAG---------CTCTTTTAAATAACATAATTTTCAAATATTATCCTGTTAGCCATAGGAAGTAAAATGTTTATTTTACAAA--GTGCAGCATTAT---------------TTTAAGCACCTTAATTAATGTT	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
..........................................................................GGCAGTAAAATGTTTATT..........................................................	18	1	5.00	0.00	5.00	0.00
..............................................................................GTAAAATGTTTATTGTGC......................................................	18	1	4.00	0.00	4.00	0.00
.........................................................................TGGCAGTAAAATGTTTATT..........................................................	19	1	2.00	0.00	2.00	0.00
......................................................................CATTGGCAGTAAAATGTTTATT..........................................................	22	1	1.00	0.00	0.00	1.00
.............................................................................AGTAAAATGTTTATTTTTT......................................................	19	1	1.00	0.00	1.00	0.00
.............................................................................AGTAAAATGTTTATTGTAT......................................................	19	1	1.00	0.00	1.00	0.00
..............................................................................GTAAAATGTTTATTGTAT......................................................	18	1	1.00	0.00	1.00	0.00
.............................................................................AGTAAAATGTTTATTGTG.......................................................	18	1	1.00	0.00	1.00	0.00
..........................................................................GGCAGTAAAATGTTTATTGT........................................................	20	1	1.00	1.00	0.00	0.00
......................................................................CATTGGCAGTAAAATGTTT.............................................................	19	1	1.00	1.00	0.00	0.00
..............................................................................GTAAAATGTTTATTTTGT......................................................	18	2	0.50	0.00	0.50	0.00
......................................................................CATAGGCAGTAAAATGTTTATTGT........................................................	24	1	1.00	0.00	1.00	0.00
............................................................................CAGTAAAATGTTTATTGT........................................................	18	1	1.00	0.00	1.00	0.00
.........................................................................TGGCAGTAAAATGTTTAT...........................................................	18	1	1.00	0.00	1.00	0.00

super_8:1437960-1438097 +

46.02

AAGCCACAAAATTCTCTAG----GATTTAAAAACTCTTGAAAATGTG-C-----CTAAGTGTATGGAATGCTATATA-TAC-ATACTTTGCAGCTTTT---CAAGTG------ATTTGAAATCACTAAAAGCCT--TAAATAT-TGTT GAGATAC-----TTTTTAGGGCAGATTTGATATATTTTGAATATCGAAACCATACTGTGTTTTT-----GATTTATTTCGCAGTACTTTGAAGCTTGCATTAAATCGTAGCATACTTAAGAGCACCTATATCCTTTTAAATATGTGCT	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
..................................................................................GTACTTTGAAGxTTGCATCAA.............................................	20	1	1.00	1.00	0.00	0.00

128

super_0:6137758-6137902 -

37.72

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTT-------------------------------GAAAATGTGCCTAAGTGTATGGAA-----TGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT AAGCTGC---------------TTAAAAACTATTCTGAATCGATCCGCTTATCATTTATTTATATGAGAACATGCAATAGTTTTTAAAACTACACTCCATATGTACTTTCATCATTAGTCCCTAACTTGTTTCTACTTAAAAAATATATGGAACTTATTT	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
.......................................................................................................TACTTTCATCATTAGTCCCTA....................................	21	1	1.00	0.00	1.00	0.00
.........................................................................................CTACACTCCATATGTACTTTC..................................................	21	1	1.00	0.00	1.00	0.00
..............................................................TATGAGAACATGCAATAGTT..............................................................................	20	1	1.00	0.00	1.00	0.00
.......................................................................TTGCAATTGTTTTTAAAA.......................................................................	18	1	1.00	0.00	1.00	0.00
...........................AACTATTCTGAATCGATCCGC................................................................................................................	21	1	1.00	0.00	1.00	0.00
....................................................................................................ATGTACTTTCATCATTAGTCC.......................................	21	1	1.00	0.00	1.00	0.00
......C---------------TTAAAAACTATTCTGAATCG......................................................................................................................	21	1	1.00	0.00	1.00	0.00
...........................................................................................ACACTCCATATGTACTTTCAT................................................	21	1	1.00	0.00	1.00	0.00

180

super_4:1780087-1780255 -

30.33

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTG----CCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT------------------------------------------ AAGTCGGGTTTTCTTCTACTCCTTAGATCCTTTAACAAATTCGTAACTTAAAAAGTTGGCTTTTCTGCATATATATATTTTGTGCATAACAAATTGATTTCCATTTACAAATAATTATAATCTT-GCTTAGTTACGATTTCTTTAAATATAATTTTAATTTGTTTCCTTT	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
.....................................................................................ATAACAAATCGxTTTCCAT..................................................................	18	1	1.00	0.00	1.00	0.00
....................CTTTAAATCCTTTAACAA....................................................................................................................................	18	1	1.00	0.00	1.00	0.00

222

super_15:325984-326036 -

22.47

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGC--TTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT AA--------------------------------------------------------------------ATGCTTTGAAAACAGTTTTAGGGTACTTGAACTAGTTAAGGAACTAA-----CATT	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
......................................................................ATGCTTTGAAAACAGTTTTAGGGTACT.............................	27	1	1.00	1.00	0.00	0.00
.A--------------------------------------------------------------------AGGCTTTGAAAACGGTT.......................................	18	1	1.00	0.00	0.00	1.00

221

super_15:321276-321291 -

7.38

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT-
-------------------------------------------------------------------------------------------------------------GCCTCGATTGTAATTA

Size

Hit Count

Total Norm

V113
Male body

V114
Embryo

V115
Head

None

droYak2 - 9 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

236

chr3R:8821825-8821935 -

78.51

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT AAGCCACAGAAGTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTAT-------------TACATACTATGCAGCTTTTCAAGTGATTTCAAATCACTAAAAGCCTTAAATATTGTT	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
.......................TGAAAAGTCTTGAAAATGT..................................................................................	19	1	1.00	0.00	0.00	1.00	0.00	0.00

149

chrX:18532680-18532797 +

51.68

AAGCCACAA-------AATTCTCTAGGATTTAAAAACTCTTG--AAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGA---AATCACTAAAAGCCTTAAATATTGTT ATGTCATACCTCGTTGAATTCC-TAA---T-TAAATTTCCAGTCGAACTGTGTTTAAAAATGGGGAAT-CTATTTTTTCACAT--------TTTTCAAAAATTTTGATTTACTTACAAAAATGCTAAAATT----T	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
................................AAATTTCCAATCGAACTGTGT...................................................................................	21	4	0.50	0.00	0.00	0.50	0.00	0.00
...................................TTTCCAATCGAACTGTGTTTT................................................................................	21	5	0.40	0.00	0.00	0.00	0.00	0.40
...............................TAAATTTCCTATCGAACTGTGTTT.................................................................................	24	4	0.25	0.00	0.00	0.25	0.00	0.00
...........CGTTCAATTCC-TAA---x-TAAATT...................................................................................................	20	1	1.00	1.00	0.00	0.00	0.00	0.00
.............................T-TAAATTTCCAATCGAACTGTGTT..................................................................................	24	4	0.25	0.00	0.00	0.25	0.00	0.00
.......................TAA---T-TAAATTTCCAATCGAACTGTGT...................................................................................	26	4	0.25	0.00	0.00	0.25	0.00	0.00
.............................T-TAAATTTCCAATCGAACTGT.....................................................................................	21	4	0.25	0.00	0.00	0.00	0.00	0.25
........................AA---T-TAAATTTCCAATTGAACTGTGT...................................................................................	25	4	0.25	0.00	0.00	0.25	0.00	0.00
.......................TAA---T-TAAATTTCCTATCGAACTGTGTT..................................................................................	27	4	0.25	0.00	0.00	0.25	0.00	0.00
..........................................TCGACCTGTGTTTGAAAA............................................................................	18	4	0.25	0.00	0.00	0.00	0.25	0.00
ATGCCATACCTCGTTGAATTCG-T................................................................................................................	23	6	0.17	0.17	0.00	0.00	0.00	0.00
.................................AATTTCCAATCGAACTGTGT...................................................................................	20	4	0.25	0.00	0.00	0.25	0.00	0.00
...............................TAAATTTCCAATCGAACTGTGT...................................................................................	22	4	0.25	0.00	0.00	0.25	0.00	0.00
.......................TAA---T-TAAATTTCCAATCGAACTGTGTT..................................................................................	27	4	0.25	0.00	0.00	0.00	0.00	0.25

231

chr3R:4929144-4929263 -

45.56

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGT------------ATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT AAGCC--TAAACTCTATACTATCTTAAGATGGTTCGATTTGAGTCGGTGTGTTAAAGGTATCTTAAGGCACGTCAAAACCATTTAGTCTGAAACTTTTTAAT---------ATCTTTTAAAACC-----CATTAGT	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
.............................................................CTTAAGGCACGTCAAAACCATTTAGTCT...............................................	28	1	1.00	0.00	0.00	1.00	0.00	0.00
......................CTTAAGATGGTTCGATTTGA..............................................................................................	20	1	1.00	0.00	0.00	1.00	0.00	0.00
....................ATCTTAAGATGGTTCGATTTGAGT............................................................................................	24	1	1.00	0.00	0.00	1.00	0.00	0.00
........................................GAGTCGGTGTGTTAAAGGTAT...........................................................................	21	1	1.00	0.00	0.00	1.00	0.00	0.00
.........................................................................CAAAACCATTTAGTCTGAAACT.........................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00

chr3R:12445574-12445715 +

42.06

AAGCCACAAAATT-------CTCTAGGATTTAAAAAC--------TCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATA--CTTTGCAGC---TTTTCAAGTGATTTGAAA----TCACTAAAAGCCTTAAATATTGTT AAGACAAAACATAAAGATAGTTAAAAGATTTATATATGTAATGTAGCATATACACGTATATACATATATGAAATATG---AATACATAAAC---GAAACTCTACTCCCAGTGGTTTGCAGAAATATACCAAAAATTTTAAGCTATGTT	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
......................TAGAxATTTATATATGTAA...........................................................................................................	18	4	0.25	0.25	0.00	0.00	0.00	0.00

119

chrX:7830673-7830761 +

34.33

AAG------------------CCACAAAATTCTCTAGGATTTAAAAA--CTCTTGAAAATGTGCCTAAGTGT-ATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
AAAATAATGCCACTTGGTTTACAACAAAATTT----AGACTAAATATTTCGACTAAAAACTTGCCTTAGTATTATGG----------ACACAAAATTTGTAGC------------------------------------------

Size

Hit Count

Total Norm

V046
Embryo

V052
Head

V120
Male body

V058
Head

M026
Head

285

chrX:11268282-11268340 -

27.05

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT TAGGCAAAA-----------------------------------------------------------------CTGTCAGTTTTTTAAGCCATTTGAAACGTATATTTAATTTGGATTATATT	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
..................................................................................................................GGTTTATTTT	18	2	1.50	0.00	0.00	1.50	0.00	0.00

110

chr3R:26235342-26235395 +

21.34

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
AAA----------------------------------------------------------------------TATTTCACATTTTCACTGGGCACGAAACCGTCAGAAATTTGTGCTATGCGC

Size

Hit Count

Total Norm

V046
Embryo

V052
Head

V120
Male body

V058
Head

M026
Head

132

chrX:12972765-12972798 +

17.42

AAG-CCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT GATGCCAT------ATATATTATTTAACAATTATTGAAAA-------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
.......................................A-------------------------------------------------------------------------------------	20	2	0.50	0.00	0.00	0.50	0.00	0.00

120

chrX:7834378-7834388 +

7.51

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
----------------------------------------------------------------------------------------------------------------TTAAATA-TGTA

Size

Hit Count

Total Norm

V046
Embryo

V052
Head

V120
Male body

V058
Head

M026
Head

None

droEre2 - 6 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scaffold_4770:16826046-16826169 +

92.83

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT AAGCCACAGAAGTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGCAATACTACATATACATACTGTGCAGCTTTTCAAGTGATTTCAAATCACTAAAAGCCTTAAATATTGTT	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
.................................................................................CTTTTCAAGTGTTTTAAAA........................	19	1	1.00	0.00	0.00	0.00	1.00
.....................................AATGTACCTAAATGTATG.....................................................................	18	1	1.00	0.00	0.00	0.00	1.00
.......................TAAAACCGCTTGAAAATG...................................................................................	18	1	1.00	0.00	0.00	0.00	1.00
.......................................................................TACTGTGCAGCTTTTCAAGTGA...............................	22	1	1.00	0.00	0.00	0.00	1.00

268

scaffold_4845:19770780-19770902 -

50.39

AAGCCACAAAATTCTCTAGGATT--TAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATG-CTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAG--CCTTAAATATTGTT TCGGG---AAACTTTGCATAACTTTGCCTTACTCCTGTGAGCCGAGGTAATTTTAGGAAGCGTGTATTTTTAAATACTTTTATGCTGTACAAATAAAT----GTTATTAAAAGTTACGTGATTATAATT	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
.................................................................TTTTTTAAATACTTTTTT..............................................	18	1	1.00	1.00	0.00	0.00	0.00

218

scaffold_4770:17034184-17034309 -

44.69

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGT------T TAATTACCTAATTTTGTGGGACACCGAAAACAATAAATTTGTATT-GATTGTATAACTAGTTGGATTTAAATTAGTAGCAGCCGTTA---CGATTTAGTGGTCTTATAAGACACCAGTGCTGCAAAACGT	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
.................................................................TTTAAAGTAGTAGCAGCT...............................................	18	1	1.00	0.00	0.00	0.00	1.00

221

scaffold_4784:2520350-2520480 -

42.98

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTT-------------------TTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT AAACCAAAATGAACCATTTGAA----------TTGGAGTTGCAAACAAAAGCATAGAATACTTAAGGAATTCGCTGAACAGACTTGAACGGTGTAACAGCTGCTTCAAATAAAGTAAAAGTA--AAGGAATATAAGGATAATA	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
..........GAACCATTTGxA----------TTGGAGC........................................................................................................	18	1	8.00	0.00	0.00	0.00	8.00
....................................................................ATTCGCTGAACAGACTTGAAA......................................................	21	1	2.00	0.00	0.00	0.00	2.00
..............................................................................................AACAGCTxCTTCAAAGAAA..............................	18	1	1.00	0.00	0.00	0.00	1.00
.......................................TGCAAACAAAAxCATATAAT....................................................................................	19	1	1.00	1.00	0.00	0.00	0.00
..............................................................................................................AAAGTAAAAATA--AAGGAAA............	19	2	0.50	0.00	0.00	0.00	0.50
.........TGAACCATTTGxA----------TTGGAGC........................................................................................................	19	1	1.00	0.00	0.00	0.00	1.00

scaffold_4690:4476413-4476478 +

31.74

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT AAGCGAAAAA---------CATTTAAAAAAGATTGAAAATGTGCTGAAAAATAAATGAATATGGATATACAAATT-------------------------------------------------	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
......................TTAAAAGAGATTTAAAAT....................................................................................	18	2	1.00	0.00	0.00	0.00	1.00
.....................ATTAAAAAAGATTTAAAAT....................................................................................	19	3	0.33	0.00	0.00	0.00	0.33
......................................ATGGGCTGAAAAATACAT....................................................................	18	1	1.00	1.00	0.00	0.00	0.00
...............................ATAGAAAATGTGCTCAAAA..........................................................................	19	1	1.00	0.00	0.00	0.00	1.00

172

scaffold_4690:5734086-5734138 -

25.6

AAGC---CACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT AATTTTCTGCAAAACTTAATAGTATTTATATA---TTGATAATGTTTCCATGCTTA-----------------------------------------------------------------------	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
...........................ATATx---TTGAGAATGTTTCCA.............................................................................	19	1	1.00	0.00	0.00	0.00	1.00

droFic1 - 21 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

225

scf7180000453493:153900-154030 -

49.58

AAGCCACA-AAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGG-AATG----CTATATATACATACT--TTGCAGCTTTTCAAGTGATTTGAAATCACTA---AAAGCCTTAAATATTGTT
CTGCCGTAAAAATTCCCTTAAATTCAAAAAAC--AGAAGAT-TAAGTGATTGTATTAGAATTTATCCAATATACACTTAATGCTATCCGATTTTGAATTTACTGGAGATTTCTGTGGCACGCCTTAACTTTCGC-

Size

Hit Count

Total Norm

scf7180000453784:823391-823520 +

48.62

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATAC------------------------------TTTGCAGCTTTTCA--------AGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
T-----CAAATATCTTAACAATTAAATTATA------ATTGAACTTAACTTTAT------------TTACTTATTATTTAAGAAATTTGATCTGAGATATTTTCTTT---------AAAATGAAAAAAGGGTTTGAAATTTATAAAAACTTTAAATATT-TT

Size

Hit Count

Total Norm

273

scf7180000453842:193088-193211 -

48.49

AAGCCACAAAATTCTCTAGGATT-TAAAAACTCTTGAAAATGTGCCT-AAGTG---TATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAA--GCCTTAAATATTGTT
AAAAA----AA-TATTTAAAAATAAGAAAATATTTAAAAACACTTCTCAAGAATCCTCT--TAAGTAATATTTAAATAAAAAAAAACATTTTTAATATTTTGAAAGAAATAAAATAAATATAAAAAGTACT

Size

Hit Count

Total Norm

365

scf7180000454050:514391-514517 -

48.39

AAGCCACAAAATTCTCTAGGATTTAAA--AACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATA--TTGTT
AATCTTAAGGTTCAAATAGTAATTAAATCAACTTAGGGAAATTTGCCTAAAGAATTATAAATCTGAAAAGT-TAACCAACTAAATAAATATGTATTTTGTAAATTCTAATAGTCAGGGGGGTTTTCTT

Size

Hit Count

Total Norm

scf7180000453882:704776-704910 +

47.53

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATAT-------------------------ATACATACTTTGCAGCTTTTCAAG---TGATTTGAAATCACTAAAAGCCTTAAATATTGTT
A-----------------GAATTTAAAACAATTAAAAAGTGTGCCTAAAAGTGTGCAGTGAAATGGTTCATCAAAGCTATCAAATATTTTGCTGCATACTTTTGAGCACTCCAAGCATTGTTTTGGAACCTCCAGACATTTTAGAAAGCATT

Size

Hit Count

Total Norm

422

scf7180000454105:831779-831884 -

45.05

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTA------TATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
TTTTAACAGATTTTACTACGGCATAAAAGGTAATTTAAATTCAGGGAGAGGTATGGAGTTACAGTCAAATAAAAAAATAGAATTTTCGTTTCCAAGGGATCTGAAA------------------------

Size

Hit Count

Total Norm

319

scf7180000453940:111246-111352 -

43.85

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
GTACAATAAATTTAAGTTACATTAATAAAATT----AATTGTAATTAAAAACATTGAATCCAACACATAGTTGATTTTATACTTCAAATGCTAT-------------CAGTTTTAAATACATTT

Size

Hit Count

Total Norm

429

scf7180000454107:1231114-1231224 -

43.33

AAGCCACAAAA-TTCTCTAGGATTTAAAAACTCTTGAAAATG-TGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
TAATAGCAAATAATTAGTATTGATTACAGCGCCTCGCCATTGATTGATAACACTGTGCAAAGCAGAATATGCTAATTTTTG-C--------------TTGAACGTCTAAAGCTTTTAATTATTCTT

Size

Hit Count

Total Norm

scf7180000453800:324328-324443 +

42.26

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
AATATACAATTTACGATAGATCGG----AAGCTGAGCGAACTACTTAACTAAGTTAGTTGCAATA----CAGCCGATATGCCCCTTTAAACGAATACACACACATATATGCATAAAACTATATG

Size

Hit Count

Total Norm

193

scf7180000454106:2412778-2412868 +

42.24

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
A--------------------TTACAAATCTCTTGAAAA-ATGCTTCAATCTTTTAA----------GATCTGTTGT---GCATTTCAAGGGATTTGAGATCACTAAAAGCTTTAAATATTGTT

Size

Hit Count

Total Norm

224

scf7180000453438:43833-43948 -

41.41

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
CTTCGGCAAG-----CCGAAGCTTATATACCCTTGCAGTTAT---CAAATATGTCGAACAAAAAACCTAAAGGCTAAACAACATCGAAGCTATGACGATTTTTCTATTAATTTTCCATATTTTC

Size

Hit Count

Total Norm

317

scf7180000453929:1885546-1885661 -

40.75

AAG---CCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGC--CTTAAATATTGT----T
ATTCATTCATAAAATC-------------AAATTCCCAGCATTTTGTTTAACTAAATTAATCA----ATTAAAGTACTTCAAATTCCTGCCGTCCATTTTAAACAATTAAAGTTAACTCGATTGTTGTACTAC

Size

Hit Count

Total Norm

233

scf7180000453773:400683-400785 -

39.49

AAGCCACAAAATTCTCTAGGATTTAAA------AACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCA---CTAAAAGCCT-----------------------TAAATATTGTT
AGTGCACT---TTTAGTAGTATTTTTAAGACACAGCTCTT---------------TTT----------------------TTAGCATCTTAC---A-------AAATCAAAATATAATGCCTTCAAGATAGTAGATAAATAGTTTTACAAA---TT

Size

Hit Count

Total Norm

374

scf7180000454065:1688457-1688600 -

33.22

AAGCC---------------------------ACAAAATTCTCTAGGATTTAAAAA-------------------------CTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTA-----------AATATTGTT
GCATCTGCCTGTTGACTTTGCTTAGTTGCCAAATCGAATTTTTGGGGGTTTTTAAATTTTTTTTTTAATAAAAATAAGCAACTCTTGAGTAG----------------ATTGCAAGAGAAAAG---------------------------TGTTAATAAAGACTGGACAGATAGAGAAATTTGTGTT

Size

Hit Count

Total Norm

406

scf7180000454073:3397284-3397333 -

27.05

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
A------------------------AAAACTAGTGTGTAAACGCCACAAAGTATGCAATATTATACATATATAC--------------------------------------------------

Size

Hit Count

Total Norm

169

scf7180000454077:1807320-1807364 +

19.67

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
TAACCTAAGTACACTTAAGAATTTCGATGATTTGGCCAATGTTCC-------------------------------------------------------------------------------

Size

Hit Count

Total Norm

scf7180000453787:23612-23649 +

18.85

AAGCCACAAAATTCTCTAGGATTT-AAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
AATAATAAGAATTATTTAGTACTTCGTAAACTATTTAA---------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

385

scf7180000454072:802866-802903 -

13.93

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
TAATTTTAAATT--TTTAACGTTTTCTTGCACTTGCAATT------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

330

scf7180000453982:31647-31657 -

7.38

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
-----------------------------------------------------------------------------------------------------------------TAAATATTATG

Size

Hit Count

Total Norm

None

269

scf7180000453841:351409-351415 -

4.1

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
---------------------------------------------------------------------------------------------------------------------TATAATT

Size

Hit Count

Total Norm

None

scf7180000452523:1215230-1215232 +

1.64

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
GAG-------------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

None

droEug1 - 12 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scf7180000409467:702681-702800 +

64.55

AAGCCACAAAATTCTCTAG-GATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATA-CTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAA------GCCTTAAATATTGTT
AACCCTCGTAAGGGTTTAGTGATTAAAAAGTTCTTGAAACTGCGCCTAAGGATGTGCAATGT---------ATGTTTGAGCAGCTTTTCAAGGCATTTAAAATCATTAAAATTAATAGC---AAATGAGGTT

Size

Hit Count

Total Norm

144

scf7180000409462:2938424-2938546 -

49.59

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTAT---GGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
ATAGTCCATAAAAGACAAAGTTTAGATGATTATTTGAAAGGAAACTTCTTAGATGTTTAATTTCAATTTTTAAATGCA----ATTTTCTTAAGTTCTTTTAAAACATTCGAAAACTAACTTTTTATC

Size

Hit Count

Total Norm

133

scf7180000409456:135298-135400 -

46.72

AAGCC-----ACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTG------------CAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
AGAACGTGATAAAAAGTTCAGTAATATACA--------------------------------------TATACTAAAATTTTGGTATATTTTGAGTAACTTATTATCCTATTTAAAAAGACTAAAAAAGTTAAAAATTGTC

Size

Hit Count

Total Norm

179

scf7180000409672:1395575-1395697 -

46.63

AAGCCACAAAATTCTCTAGGATTTAAAAACT-----CTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTT------------GCAGCTTT---TCAAGTGATTTGAAATCACTAAAAGCC---TTAAATATTGTT
AACTGCGAAAATATTTTATTTTTCATTAACTTGGGTGTTAAAAGTGAATTTATT---------------AAAAACAGGTTTTAGGAATATTTTTAGAATTTTATTT--------TAATAACCATTAAGGGTTATTTTAGCCATTGA-

Size

Hit Count

Total Norm

209

scf7180000409804:2470571-2470716 -

42.93

AAGCCACAAA----ATTCTCTAGGATTTAAAAACT------CTTGAAAATGTGCCTAAGTGTAT-------------GG----------AATGCTATATATACATACTTTGC--AGCTTTTCAAGTGATTTGAAATCACTAA------AAGCCTTAAATATT--GTT
AAGCCACGAATGATATGATACAGGGTGTTTAAGCCTAAACTC-------------------TATACTATCCTAGTATGGGTCGATTTGAAT--CGGTGCATAAGTAATCTTTAGGCTTTCCTAAGCCATGTAGTTTAACGATAAAAATGATCTTTAAATTTTCCCTT

Size

Hit Count

Total Norm

scf7180000409711:4356003-4356111 +

41.44

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGC---AGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATT--------------GTT
TAAACGAAAAATTGTGTAAAA----AAAAATCCTCT------------TTGTGTTTTTTCATATATATATATCTTTTTAGTGTAC----------------TTTTTCTAAAAACCTTTCATTTTGGGTGTAATTTTATATT

Size

Hit Count

Total Norm

162

scf7180000409474:2719223-2719329 -

39.51

AAGCCACAAAATTCTCTAGGATTTAAAAACT---------CTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
AGAAGA----ATTTATTGGGAATTTTAGTATCCAATTTTAGAAGAAAAAATCTGTATTAGTATTACTTGTCAGTTTCAAAATCTTTTCCATTTTTGTAATAGTCAGAGATC----------------------

Size

Hit Count

Total Norm

104

scf7180000409901:156522-156581 +

28.22

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGT-GATTTGAAATCACTAAA------AGCCTTAAATATTGTT
ATG----------------------------------------------------------------------ATATGTATCTTTTTTAGTGGGTTTGGGGTGGCTAAAATGGAAATTATTGGATATT-TT

Size

Hit Count

Total Norm

118

scf7180000409110:964141-964204 -

27.4

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTT-AAATATTGTT
------------------------------------------------------------TTCTATATATTTC-TGATTCGTTTTTCACTTTTCCGGCACATACAAAGATCGACACAATCGGGTT

Size

Hit Count

Total Norm

scf7180000409767:611067-611110 +

22.13

AAGCCACAAA-ATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
AAGTTAAAAACATTTTTTTATATCTTTAAAACTTTGAAACTATG---------------------------------------------------------------------------------

Size

Hit Count

Total Norm

scf7180000409209:60674-60713 +

19.99

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
ACTCCATAAAACTCAGCAAGAATTCC-ACTTGTTGCAAATG-----------------------------------------------------------------------------------

Size

Hit Count

Total Norm

127

scf7180000409223:370340-370389 -

18.69

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
TACACGT-------------------------------------------------------------------T-------TTCTTGTTTTTTTTTAAGTTTTTGTTGTATTAAAGTCATGCT

Size

Hit Count

Total Norm

droBia1 - 24 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

317

scf7180000302402:7483054-7483157 -

56.6

AAGCCACAAAATTCTCTAG-GATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
AAGTCACTCAAATCTCTAGGGATTTCAAATCTCCTGAAATTGTGCCTTAATGTA-GCAATGTT-----------TTTTGCAGCTATTCTAGT---------TCACCAAAAACCCTAGAAATTGTT

Size

Hit Count

Total Norm

182

scf7180000298389:189784-189907 -

51.1

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGC-CTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
AAATAAAAATATTTTCCTCTGAATATTATTGCTTAAATTCTGAATTTATTGGTGTTAAAAAATATAAATTAAGTCTCTAGGGCTTTGAAATCACTTTAAAATAACTAAAGAATATATATAGTAT-

Size

Hit Count

Total Norm

275

scf7180000302136:398131-398247 -

50.47

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGA---------ATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
GATATTCGAACTCTTCTATTATAAAGAAAGTTTTGAAAATGTGTCTAATTTCAATAAGAATATCAGAATTTACATATAAATTCTT-GTA--------------AAAGTATCATTAATAGT-TTAGATCTAGAT

Size

Hit Count

Total Norm

217

scf7180000301754:2556877-2556981 -

49.28

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
GACTTACAAGATTATTGGAGATTTTAAGTAGCTTGAAAATGTGCCTAAAAGTATGCAGTGAAAAATGTACT-A-----------------CGTTTTAAGACAAATTAAAAATTTAAAGATT-TT

Size

Hit Count

Total Norm

181

scf7180000298389:189707-189849 -

47.99

AAGCCACAAA---ATTCTCTAGGATT-TAAAAACTCTTGAAAATGTGCCTAA---GTGTA--TGGAATGCTATATATACATACTTTG---------CAGCTTTTCAAGTGATTTGAAA---TCACTAAAAGCCTTAAATATTGTT
AAAATATAAATTAAGTCTCTAGGGCTTTGAAATCACTTTAAAATA--ACTAAAGAATATATATAGTATAAAGAGTATATATATTTTTTTAATTCATTAAATTTCTGAATAGTTTTAATTTTTCAATAAAACACTGAAATATTATT

Size

Hit Count

Total Norm

109

scf7180000302187:1232119-1232235 +

47.57

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTG-AAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAAT-CACTAAA--AGCCTTAAATATTGTT
ATGTCACTATTTATTTTTTAATTTAACTACTTTTTAAAAATAAAACTA-----------TAATTTATCCACCTACTGTTGATATTTTAGGATTTTTTGGAACACATTAGGGGTGCTATCGAAATCACC

Size

Hit Count

Total Norm

249

scf7180000302113:749435-749538 -

47.0

AAGCCACAAAATTCTC---TAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATAT-ACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
ATGCCAGTAAATACTGAGTCAAGGTTTTTAAATACTAAATGAAAATCTTATTTCTCTAGGGGGTTACATACAACTTTCAATTAAGTTACTTTAGTGGTCTTAAA------------------------

Size

Hit Count

Total Norm

scf7180000301506:203882-204000 +

46.16

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
GTTATATAAACTGTTTAAGGTTTAAAATAGTTTTAAATCTCTGAAGACTCTTCTAGGATTTA-----AAATCTATCTTTAGTTTTCCATGAGAACGAGAAAAACTTTATAAATAGACCAGGATT

Size

Hit Count

Total Norm

157

scf7180000302422:7403794-7403913 +

46.11

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCC-TAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAAT---ATTGTT
CTTTTAAAAATATATTTTTAGTTCAGATGTTGAACAAAATGCAAACCAATTTTAAAGAGCGTTA---ATAAATTTAATGAATATTTAAAACTG-T-T--GATTAA-AAAAGATTTAAAAGCAGATTTT

Size

Hit Count

Total Norm

111

scf7180000302188:1019805-1019908 +

44.69

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
AAACCGTGCAAACGAATAGTAGTAATAGATTTTAAA-----------------TAGGACAATGTAAATAT---TTATACATTTTATTAAATAATCTAAGGTTTCTAAAAACATTAAATATTGAT

Size

Hit Count

Total Norm

273

scf7180000302126:3413518-3413635 -

43.86

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATAT--ACATACTTTGCAGCTTTTCAAGTGATTTG---AAATCACTAAAAGCCTTAAATATTGTT
TC-----ATACACTTCTAGCATTTCA-------TTACAATCATTATAACCTGATTATAACTTTTATGATCTTATGATCTTCGATCTACTTACTGAATTTAAAAAGTCATGGAAACCTTAAGAAAACCAC

Size

Hit Count

Total Norm

350

scf7180000302428:9270342-9270477 -

42.9

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGT-GTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATA------TTG-------TT
AACCAAAAAAAAACCACTTGAATTGAGAATGCTAGCGAAAGCGTAGAACACTTAAGGAATTCGCTGA--ACAGACTTGAACGGTTTAGGAACTGCCTTAAATAAAACGCAGTTTAAAAAGTTAATATTGTAATAACGT

Size

Hit Count

Total Norm

scf7180000302041:859880-860024 +

40.69

AAGCCACAA-AATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTT--TCA---------------------AGTGATTTGAAATCACTAAAAGCCTTAAA-----------------TATTGTT
CTGGTACGTGAAAATGTTATTATACAAAAACTCATAAA-----GCCTGAG---------------ATATATGTACTAGCCAAGTTTAATCAAGGTGTTGCTGCATTGGTTTTAACAACTTTGAAAGAGAATATGCCTTAAAAATCCAAGAAATACCAATAAATAT

Size

Hit Count

Total Norm

133

scf7180000302402:1907234-1907370 +

40.2

AAGCCACAAAAT--------------------TCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCA------------------GCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
AGGTCTAAGAGTAGGAGTCCTAACTAAGATGGTCTCAGCGATCTGTAAACAAA-------------------------AGATTTATATATATAAGGATCAGTTAAAATTCATCTGAATACTGATCTATGTATTTAAACTTTATAAAAGATTTAAAAAAAGAT

Size

Hit Count

Total Norm

208

scf7180000301703:416605-416754 -

38.53

AAGCCACAAAATTCTCTA-----G---GATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCT---------------ATATATA--------CATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
CATAAAAAA--TACTATACTATGTGAAATCCCAGAGGTTCTTAAAAGAGAGCCTTAGAGTTAGGTTCCCTTAGTGAAAAAATACTATATGAAGTCTCCAAAGTTCT---TAAAAGTTCGTGAGAGTTAGGTTCCCTAGAAATACTATGTAAAATA

Size

Hit Count

Total Norm

252

scf7180000302113:1445206-1445288 -

37.7

AA-----GCCACAAAATTCTCTAGGA----TTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
AAAACTAGCCTTGAATCGATCGATGAGTAAGGCAAAAACTAGTGTGTAAACGCCGCAAAGTATGCAATATTATACATATATAC--------------------------------------------------

Size

Hit Count

Total Norm

250

scf7180000302113:1175339-1175410 -

36.38

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
---------------------------------------TACGCCTAA-TTCATAATGTGTAATATATGTATACTTTGTACCTTTTTATGTTATACACCATCCCCACGATCC------------

Size

Hit Count

Total Norm

scf7180000301754:1410286-1410360 +

28.69

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGA--AAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
AGTCTACACGAAGAGCTCACACCTGAAGGCCCACCAAAGAACGCACACAGGTGAGTGGGATTTTGGGCACAAATA---------------------------------------------------

Size

Hit Count

Total Norm

scf7180000301760:5026310-5026363 +

24.76

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
CATCAACAAATCTAACAAAGAATACAAAC-----AAATATTTTACTTAGTGTAACGAAT-----------------------------------------------------------------

Size

Hit Count

Total Norm

239

scf7180000302075:1216292-1216337 -

23.77

AAGCCACAAAATTCTCTAGGA---TTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
AATCCAATTAATTCAGTAGCAACATTTAAATGAACT-----------------------------------------TCTGCAGCTG----------------------------------------

Size

Hit Count

Total Norm

scf7180000300910:437920-437961 +

19.67

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
----------------------------------------------------------------------------------TTTTAAAGTGATTTGGCTTGATGAATTTTTAAATATATATAT

Size

Hit Count

Total Norm

droTak1 - 24 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scf7180000415653:147145-147268 +

49.94

AAGCCACAAA----ATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCAC---TAAAAGCCTTAAATATTGTT
AAGCCACGAATAATAAGATACAGGGTGTTTAAACTCTAAACTACGTA-------GGATGGGTCGATTTGAGTCGGTGCATTAAAGTTATCTAAGCCATTTAGTCTGAATCATATATATATTTTATATTATC

Size

Hit Count

Total Norm

226

scf7180000415709:61428-61549 -

49.65

AAGCCACAAA-------ATTCTCTA--GGATTTAAAAACTCTTGAAAA-----TGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAA---ATATTGTT
ACACGACAAATCAGACAGTTTGATAGCAGATTTAAAAAAATT-A---ATTTTCAATTTTTAGGTATATTAAG---------TACTTACTTTAATGTTTTTAAAATTTTTTAGAACAG------ATTTTAAAACATTTTGAT

Size

Hit Count

Total Norm

scf7180000415394:667869-667979 +

49.43

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAAT---CACTAAAAGCCTTAAATATTGTT
AAGGCA--------------ATTTAAAATCTT-TAGACATATTTTTAAAAATTGTAAATGCAATTTAAAAACTCTAGACATTTTTTCAAA-AATTTGAAGTGTCCTTTAAAATCTCTATACATTGGA

Size

Hit Count

Total Norm

250

scf7180000415811:218560-218686 -

49.4

AAGCCACAAAATTCTCTAGGATTTAAAAACTC---------------------TTGAAAA------TGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
AAGCTGAAATTTTTAATTGAATTTAAAATCTGAATGGATCTTATTTTTGATATTTAAAAAAATTATTCAGCCCAAGAAAATCAA---------ATAGAAAATCTGCAGTT---------------GAACTTAAAGGGTTATAAATATTGTT

Size

Hit Count

Total Norm

scf7180000415364:249422-249545 +

47.68

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGT------GATTTGAAATCACTAAAAGCCTTAAATATTGTT
GGACTATGAAATT------AATTTTAAAATCCTTTAAAATGTTTAAAAAAAAATTTAATTTATTATAGAGGTCTTCTGTACATGTGTAAATTCATAAAATGTAGAACTATGTAAAGCTTCCCTTGTAATT

Size

Hit Count

Total Norm

180

scf7180000415306:141395-141500 -

46.25

AAGCCACAAAATTCTCTAGGA-TTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
ATTCCGTAAAT---------ATTTTAAAAGC-----AAAATTTTTTTTATTTTAGGCCGTTTTTTGTCCGCATGTTTTA----TTTAAAGTAGGCTTTAAACCAGAAAACCCCTTAAACGTTGT-

Size

Hit Count

Total Norm

256

scf7180000415864:257636-257752 -

45.24

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGC-TTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
T---CCGAGAATCCTTTATCATTTTGTCCAGGTT--GAATTTGCGTTATTTTTTTAAAGATAAGAACTATAGACCGC--GACTTCTTCAAAGAAA--GATTTTCCGAAGATTCTTTATTATTTTG

Size

Hit Count

Total Norm

116

scf7180000415871:731463-731568 +

45.18

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTT--GAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATC-ACTAAAAGCCTTAAATATTGTT
AAATTAAAGAATTGATTTAGAT----ACATTTTTTACA----------AAATTTATCGGTTTTTTTATTTACAATT-------TTTTTTAAATAATTTAACATTTTCTTAGATTTAAAAATATTCTT

Size

Hit Count

Total Norm

126

scf7180000415909:240698-240829 +

45.17

AAGCCACAAAATTCTCTAGGATTTAAAAACTCT--TGAAAATGTGCCTAAGTGTATGGAATGCTATAT---ATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCAC---TAAAAGCCTTAAATATTGTT
GAGTACTAAAATTAAGAATGAATCAAGATTGTATATAATAAGCAGCCTAAATTTATTATTTACAATATTATTTATTACTTTTATTATTTATTTATTAAGCTAAAAATATGTAAAAAAAATATAAAAATAATT

Size

Hit Count

Total Norm

scf7180000415401:707209-707343 +

44.86

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAA----------------AATGTGCCTAAGTGTATGGAATGCTATAT-ATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
TTATAAAGAAAATATTTATG--TTAAAAACTCTGAAGTTTAGTTTCCCGATAAGCTGTACCTATTATTACCCATTACTAGACCATAAAAACA--TAGGTTTTTCTGTTGGTTTAAAA--ATTTGAAACATAGAATGTGCTC

Size

Hit Count

Total Norm

scf7180000415401:394459-394569 +

44.76

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
AAGTTGGTAAAGTGAAAAGAACACAGAGATCGTTTGAG-------AAAATAAATCGAAGTTTAATTAGATACATTTTC------TTATAGATACATTTTAAAATTAAATGAATTATGTATTTTA

Size

Hit Count

Total Norm

scf7180000414009:39365-39466 +

44.33

AAGCCACAAAATTCTCTAG-GATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATT-TGAAATCACTAAAAG-CCTTAAATATTGTT
----CACAGAAACCTTTAGGGATTTTAAATCTCCTGAAATTGTGTCTAACTTT----------------------TTTTAAGCCCCACAAATTATTTTAAAATCACTTAAGAATTTTGTCAGTTATT

Size

Hit Count

Total Norm

scf7180000415709:106099-106246 +

44.0

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATAC-------------------ATACTTTGCAGC-----TTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
AAGATAAAATATTTTTAGAGTTTTAAAAACTCTTAAAAATGTCTCTAAAAGTATGCACTGAAACATTTACAGGGCTTAGAAGAGTACAAATATTACGCAGCATACTTTTAGACATGTTTAAAAATAATTTAATTTAATTTAATTAATT

Size

Hit Count

Total Norm

147

scf7180000414393:160672-160801 -

43.41

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCA-----------------------GCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
AAGAAACCCACCCCT----------AATAAGCTTGAAAATTAATCTAATTTTATATAACAATATATATTTATCTGTTGCACATAATTTATTGTATTTATCTATGTTTTGGAAACGATGTGTATACACTAAAAACTT-------ATTT

Size

Hit Count

Total Norm

scf7180000414671:303720-303860 +

42.34

AAGCCACAAAATTCTCTAGGA------------TTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAAT----CACTAAAAGC-CTTAAATATTGTT
ATGTTACAAAAATATATGGGTCATTTTAACAAAGTAGAAGGACTTTGAAAAAGTTTTTAAGTAACTGAACTTTTTGATACATTTAAAAAACATTTTTATAGGTTTATAAAAAACCATCTTTAAACTTAATAAAATAGTTTT

Size

Hit Count

Total Norm

219

scf7180000415660:122867-122980 -

41.84

AAGCCACAAAATTCT-----CTAGGATTTAAAAACTCTTGAAAATG-----TGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
AGGAAGCTACCTTCGGCCAGCCGAAGCTTATATACCCTTGTAGATAAAAGAATACTCACTCGGTGCAGTTCCAGGGATTCCAGA--TTCAGCGTTTCAATTTATTTC------------------AATTTTGTT

Size

Hit Count

Total Norm

184

scf7180000415352:153636-153744 -

41.13

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCA---CTAAAAGCCTTAAATATTGTT
CAGCCAGCCAGCTCAGGTGAGGTGAA-ATATCCTGAAAAGTTGGGAAATTAC---------TAGGAAAATATAGTTTTTA-------AATAGAAAATAAATAATTTCG-TAAAACTAAGAAATTAGT

Size

Hit Count

Total Norm

160

scf7180000415157:435850-435990 -

40.75

AAGCCACAAA------ATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCT---TTTCAAGTGATTTGAAATCACTAAAAGCCTTA------------------------AATATTGTT-----------
AACCCAAAAAAAAATAATTCACAAAGACTAAAAA-------AAAGTTTGCCTAAAAAAATGAAAAAGT-----------------GGCATAATTT---CTAATTAAGGATTACTTTAAACCAAAAACTATTTCAAAATCTTTTTCTAAAATATTGGTTTATAAATAGT

Size

Hit Count

Total Norm

179

scf7180000415287:281337-281441 -

38.26

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGA-----TTTGAAATCACTAAAAG----CCTTAAATATTGTT
TTTCTA---AGTT--CATAAATTTAA-AA------------TACTTATATTTGTCA-----TATTTCTAAATATTTTACAAGTTACCATATCAAATGCTTT------ATTTAAAACGTTCTTTAGTCATGAAT

Size

Hit Count

Total Norm

153

scf7180000414562:333239-333393 -

37.1

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATA----------------CATACTTTGCAGCTTTTCAAGTG---ATTTGAAATCACTAAAAGCCTTAAATATTG--------------TT
ATATCAAGCAGTAATTTAGACATTAATAATCCAAAAA--AATCGTTAAATATATTAAATATACTATCAAAATTTAACCAAGGTTCCATTTTCGACAACTTTTAAAGAGGATATTAATAATTTATAAAAGCTTTTGGTACTAAATATTGAGAGCTTTA

Size

Hit Count

Total Norm

274

scf7180000415914:458793-458844 -

22.95

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
A------------------------------------------------------------------------TTTTTTTACTCCTTATTTTCTTTAAAGTAATTAAAACCCAAAAGAAGAATT

Size

Hit Count

Total Norm

droEle1 - 37 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scf7180000491011:146343-146464 +

53.33

AAGCCACAAAAT-----TCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTA---TGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
AAATGGCAAATGCTAATTTAT--GAGGTTGTAAACTTTTATAAATGTCG-TAAATCTTTCATAACAAGCTCTA------TGATATATGGCTGTTTAAATATCAAACAACTATTTA-GATATAAAACAGGGCT

Size

Hit Count

Total Norm

scf7180000491044:208835-208953 +

50.94

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTG---ATTTGAAATCACTAAAAGCCTTAAATAT-TGTT
TT-CTATAACATTTTT----ATTTTAAAATATTTGTATATAA--AAAAAAGTATGGCAAAAA---CAAAAAATATTCGCTGATTTTCAGATTTCCAGTCGCTATCAAAAAAAATTTTAAATATGTACA

Size

Hit Count

Total Norm

171

scf7180000491249:3368629-3368742 +

50.03

AAGCCACAAAATTCTCTAGG--ATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATT---TGAAATCACTAAAAGCCTTAAATATTGTT
AATCCA--AAGTTCGCTATTTAATTCAAAACCT----------TTACTAATTTTAT---ATTTTATTTTTATATATATTATATTTTATGATTTTATTAGATCAAATCATAACTTAACATAATTATTGTT

Size

Hit Count

Total Norm

384

scf7180000491240:537078-537203 -

49.93

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTG--CAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
AATTTAAAACTTTTATTTCAATTCAAAAATTAAGCAAAAAAAATGTATATTTTTGAAATCAAAAAATTACCGAATTACCTTACAATGTAAATTGGTGGTAAAAATTAAAAAGTCTAAAATAATGCA

Size

Hit Count

Total Norm

scf7180000486474:125185-125304 +

49.91

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGC-----------------------AGCTTTTCAAGT-GATTTGAAATCACTAAAAGCCTTAAATATTGTT
AAGGTACAAGGTATTTAAA--------------TAAAAAAGTACCTAGGTAAGGTAAAAGGTACACAAAGGTACTTTTTTTTTTTAATTTTCACGAAGTTGTAGT--------TGAATTAGGAAACATCGTAAATCTTACAT------

Size

Hit Count

Total Norm

276

scf7180000491011:1168175-1168297 -

49.21

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAAT----CACTAAAAGCCTTAAATATTGTT
AAGACCAAAAAGGTT-TAACATGTATATTTCATTTG-AATTTTAATCAGCAAACAAAACATTCCGA--ACTTATTTGGCATTA-ATTGAATAGTATGAAAATATTAATTAATAAAAGGAAATATCATT

Size

Hit Count

Total Norm

416

scf7180000491347:236840-236954 -

48.81

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATG----GAATGCTATATATACATACTTTGCAGCTTTT--CAA--GTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
T----------TATTCTACCATTTTAA---TCATGAAAATGAAATAAATATTATTAATATAATTT--AATTTTCACATTTTTCACCTTGTTGCTATTATAATTTTAAAACACTA---ACCAGAAATAAGGCC

Size

Hit Count

Total Norm

138

scf7180000491186:2165693-2165808 +

48.66

AAGCC---ACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
TTTCCCTTTCTAAGTGCTCTAAAAATGTAAAA------TAAATACTCCAAAAAAAATATATTATAATATGTGTTTTAAATAAAACTTT-CAA--AATTTACAATCATATAAAA--TACAATATTGTT

Size

Hit Count

Total Norm

362

scf7180000491212:2020325-2020437 -

48.52

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGT----GCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
TAGTTCTATAATAATATAATATTAGTAATCGTTCTTAAACAGCAAAGCA----------TAATTTTATAATTCCAAACCA-----AATATCTAAATATTGAAAATAGTTAAAAGGTGTTAGTAGTTTT

Size

Hit Count

Total Norm

327

scf7180000491087:11550-11684 -

46.77

AAGCCACAAAATTCTCTAGGATTTAAA--AACTCTTGAAAAT--GTGCCTAAGTGTATGGAATGCTATATATACATACTTT---------GCAGCTTTTCAAGTGATTTGA-------AATCACTAAAAGCCTTAAATATTGTT
AATCTGCCCAAATCAGT-----TAAAACGCAGTTTTGAAAACATCTAGCTCAATATGACGC--TTTCCAACTAAAAACTCTTAAGCGGAGGCATTTTTCTAGTTAAATTTATAGTCTACA--ACACGAAATTGACAATATAGTT

Size

Hit Count

Total Norm

scf7180000491006:2594410-2594533 +

46.17

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAA------TCACTAAAAGCCTTAAATATTGTT
CATCAACAAATCTAACAAAGAAA------AACAAAAATATTTTACTTAGTATAACGAATAACAAACAAAAACAAAACAAAACAAAACAACAAAACAAAGAAAACAAACGATAAAAACTTGGGATATTTTC

Size

Hit Count

Total Norm

399

scf7180000491272:309801-309899 -

45.9

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAG-----------CTTTTCAAGTGATTTGAAATCACTAAA-----AGCCTTAAATA----TTGTT
---------------------------------------------TGAGTTCTTAGAGTATTACATTTATATGCAGTCCACTCTTAGGTATACTTTTTAAGTGATTTCAAATCACTATATAATTACCCTTGAATTCAATTTATT

Size

Hit Count

Total Norm

scf7180000491028:3397536-3397654 +

45.13

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACT--------TTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
ATGCCTTAACATT-----------CAAAACAAAAGACAAGGTGACAATGTGGACTT--TTCTTTCGAGACTTCTGTGGCATCCCTGTATTTTTATCAACATTTTGACAATGCTTTTATTCTTGATTTATTTT

Size

Hit Count

Total Norm

259

scf7180000491001:944871-944978 -

44.96

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAA---------GTGATTTGAAATCA--CTAAAAGCCTTAAATATTGTT
AGGTG---TAAGTTCTTAGGATTG-----------------GGGTTGAATG------AAGTTACAAGTATATTTAATAAAGTATT-TAACTCCACGCTATGAGAAGAATTCGTTTGAAAAGTGTTAAATATTGTG

Size

Hit Count

Total Norm

186

scf7180000491268:260192-260321 +

44.76

AAGCCACAAAATTCTCTAGGA----------TTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACAT----------------ACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
TGCTTAGT----TGTGTTCTTTTTAAACTGGTTTAAAATTTCT------------TAAA----TAAAATAATATATATATACATATGTATACTAAAAAAATTGATATAATTTCAAGTGCTAAGGGATTAGAAATAAGCCGAAAAACTAGT

Size

Hit Count

Total Norm

280

scf7180000491018:170724-170851 -

44.57

AAGCCACAAAATTCTCTAGGATTTAAAA-ACTCTTGAAAATG---TGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAG-----CTTTT-----CAAGTGATTT-GAAATCACTAAAAGCCTTAAATATTGTT
TCGATAGGCTATTCTCT-----TTATGCAGCCCTGGTCACAGGGTTGCCATGGTCTTTGGGTTAATTTAAATTAAAACTTCAAAAAGACACTTTCATTGGTAAATGCTTTAGGAATAAATACAAATTTTAAAT------

Size

Hit Count

Total Norm

334

scf7180000491186:688703-688823 -

44.56

AAGCCACAAAATTC-----TCTAGGATTTA--------AAAACTCTTGAAAATGT-GCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
AAACATTAAAATGTTTTTCTTTAAAAGTTAAGTCACTTAGAATTTTTTAAAATATGGTTCAAATGAGTTTCTTATCTTATAAGAATTTCTTATGAATTTCTTGTT-----------------TGAATAAAAAACTATC

Size

Hit Count

Total Norm

scf7180000490728:498061-498172 +

44.49

A--AGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATG-CTATATATACATAC---TTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
ATTAATTTTAAAAACGTTTAAAAGCTTAATGATGTTAAAAAAATG--TAATTATTTATAACTGCAACATAATTATACTCATTTTGATCTTTCCAATCATAGTAAAAT----------------AATTGTT

Size

Hit Count

Total Norm

143

scf7180000491186:2176247-2176373 +

44.34

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTT---------GAAAATGTGCCTAAGTGTATGGAATGCTA-TATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAA---------GCCTTAA-------ATATTGTT
AAGCCTTTTTAA-----TTGATTTAAGCATGATTAAAGAATTTGAA------------------GTAGGCTAATGGTTAATGAGTTTCCACATTTTTTAAAGAGTAGAAACACATCAAAGATAATGATGCCTTTATTCTTATAACAAGCT

Size

Hit Count

Total Norm

scf7180000491006:1025295-1025426 +

43.98

AAGCCACAAAATTCTCT-------------------AGGATTTAAAAACTCTTGAAAATGTGCCTAAGTG----TATGGAATGCTA-----------TATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
AAGCAACAACACCCCGTCTGTATAAATACATTTCATAAGATGTATGAATTCTTAAG------------TGACAATAAG--GCGTTTTATTTAATTGTTGAATAGATTCCTTAAAATTTTATAAGCAATTTCAATTG------------AAACGCTTTG

Size

Hit Count

Total Norm

215

scf7180000486474:1818030-1818165 -

43.91

AAGCCACAAA--ATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGA-------AT-------------GCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATC---ACTAAAAGCCTTAAATATTGTT
AAGTCTTAAAGGGTTTTTCATGACCTCAAA-----TGAAAATTTGTGGACTTATATTGTTCAGAAAATGTTTCTGTTCCTGGTTAT--AATTAAATTTT----TATGTTAACCAACTAGAAACTCTTATAAAAATGTTTACGTATT--T

Size

Hit Count

Total Norm

droRho1 - 17 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scf7180000779309:21519-21643 +

53.09

AAGCCACAAAATTCTCTAGGATT-TAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
GTGCCACAGAAATCACTTGGTTTTTGAAATCTCTTTTAAAAGTGTGCAAAAGTATGCAACAATATATGTTAAGTTCAGGAGTCCGTTAGATTCATTTAGTAACACGACTTTACTTAAGATACATA

Size

Hit Count

Total Norm

174

scf7180000777956:70245-70364 -

49.55

AAGCCACAAAATTCTCTAGGATTTAAA------AACTCTTGAAAA-------------------------TGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
AAACTGCACAATTTTTTAACAATCGAATGGCTGAATTCTTGATCCAGTTTTTTCTCCGTTTATTTTTGAGTTAACCTAAGTAT------TATTA--------------------------TTTATTAAA---AGTTAAAAGTTTTAGTACTTGTT

Size

Hit Count

Total Norm

175

scf7180000778023:9595-9722 -

48.35

AAGCCACAAAATTCTCTAGGATT-------TAAAAACTCTTGAAAATGTGC----CTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAAT---CACTAAAAGCCTTAAATATTGTT
GCACCTTGATACTTTCCAATATTAATTGCGTATTAAGTATTGAAATGATGCGAACTTAATTATA-----TGGTATTTCCACATCCTT-----CTCTTTATATGTTCTAAAACAGTTATTAAGTAATTAAAAACGTGTT

Size

Hit Count

Total Norm

271

scf7180000780276:21276-21412 -

47.11

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGG-----A---------ATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTG-AAATCACTAAA-AGCCTTAAATATTGTT
TATTTAAAATATTCTCC-GAATTTATAAGTTCAGATAAAGGAA--TGAATATTAAATTTAAAACTTATCACATAATTATTACATAAAATGTGCAACTTCTTATGTATATTAATGATCATTAATAAAATTTAAAAAAAATT

Size

Hit Count

Total Norm

207

scf7180000779410:273013-273133 -

46.72

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTG-------------CCTAAGTGTATGGAATGC-TATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
AAATGAGAACT---TTTCTAATTTACAAATTTTTTAGAAACTTCTGTTGGCACCCTTGTACTTTTATTTAATATATATATATTTATCCTTTATAGGATATTTCCTAGAGTAAATTCAGTACAAT--------------

Size

Hit Count

Total Norm

151

scf7180000777214:117495-117622 -

46.6

AAGCCACAAAATTCTC--TAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTAT------GGAATGCTAT--ATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCC-----TTAAATATTGTT
GACCAACAAACTTTGCAATAAAACCCAGATTCTAATCAAAATAAGTCTTAGAACATTTTTTCGAAAAATTGTTAATTTTCTTACA-----------TTAACAATTAAAGAAGACAAAAAGTCTTTCTTTAAAGAGTCTT

Size

Hit Count

Total Norm

scf7180000779210:22762-22854 +

44.88

AAGCCACA--AAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
CACCAATTGTCAATTCT--------AAAAATCTCTTGAAAATATGTCCAAATG-------------------------GGCAGCTTTTCAAGTGCTTTCAAATCACTAGAAGCTTTAAATTTTGAT

Size

Hit Count

Total Norm

262

scf7180000780140:39109-39236 -

44.05

AAGC------CACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCAC--TAAAAGCCTTAAATATTGTT
AAATTTTGTACACAGCCTTTTCTTTACTTATTGCATTTG-AAGAAGAAATCTAAA-ATGTATTATACC--ATAAACGTTTTCTGAAATTCGACAACAAATGTAACGTCCAAATAGTACCCTAAGCGAATATT

Size

Hit Count

Total Norm

261

scf7180000780140:38976-39119 -

43.51

AAGCCACAAA-ATTCTCTAGGATTTAAAAAC--------------TCTTGAAAATGTGCCTAAGTG-----TAT-GGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
AAGCGAATATTTTGTTCTAAGAATTATAAATCAAACACCTTTGCTTCTTAAAATGGAAGTTATTAGAAGATTTTTCTGA-TGTATTAAGAGAAATGTAGCTGTATTTCAATTGAATTCAATTTAATTGAAATTTAAGCTATGATT

Size

Hit Count

Total Norm

114

scf7180000780043:568647-568759 +

42.59

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGC---AGCTTTTCAAGTGATTTGAAATCACTA--AAAGCCTTAAATAT--------TGTT
AATCAATAAAATACTACATGTTTCAAGAAATT-----------------------TAATTGTAAACATTTTTACTTTGTCAGAAACTCCCAATT-GTGTTAGCTCATTATCGAAACTTCGAATATCAAGGTTCTATT

Size

Hit Count

Total Norm

162

scf7180000777610:24640-24787 -

42.58

AAGCCACAAAATTCTCTAGG-ATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATG--GAATGCT--ATATATAC-----------ATACTTTGCA---GCTTTTCAAGTGATTTGA-----------AATCACTAAAAGCCTTAAATATTGTT
AGAACAATAAACCATCTATAAATACAAAAACTATTA---ATTGGCTTAAATATTAGTAGAA--CTTTGATTATAAAAAAAATTGTGACACTTTAAATTCACTTTTAAAGTAATGTGATTATTGAATAAAAGAAATATAAT-ATTCAATTTGTTT

Size

Hit Count

Total Norm

scf7180000779510:31946-32034 +

28.24

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
AGGAAACCAAATAAATT-------------------------ATTCCGGTGACAGAATAATTAACTCTTCGCACACTGTAGCCGA-AAAGTGTTTGTTATTCGCAGAATGTTTAC---------

Size

Hit Count

Total Norm

183

scf7180000778257:76265-76309 -

21.31

AAGCCACAAA--AT--TCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
AAATAGCGAATGATAATTTATGTGG-CTGTAAATTTTTGAAAATGT----------------------------------------------------------------------------------

Size

Hit Count

Total Norm

scf7180000760153:28227-28276 +

21.11

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTAT----GGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTA-----AATATTGTT
GC---------------------------------TAAATACGCATATGTGTGCATCTGTA--------------------------------------------------AAGCCCTACCTATATTATAATC

Size

Hit Count

Total Norm

scf7180000763611:289234-289277 +

19.18

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
GCAACTATCTAT----------GTA----------------------------------------------------------------------AAAGCTAACGAAATGATTCATGTGTTGTA

Size

Hit Count

Total Norm

248

scf7180000780059:28892-28925 -

17.21

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
------------------------------------------------------------------------------------------TGACTTGAAGCAAAGATCATACCGAAATATTATT

Size

Hit Count

Total Norm

scf7180000761121:81490-81521 +

14.57

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
AAACCA--------------------------------------------------------------------------------------------AGCTTCTGGAATCAAAAAATATTTTA

Size

Hit Count

Total Norm

droKik1 - 22 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

225

scf7180000302471:78852-78973 -

58.27

AA--GCCACAAAATTCTCTAG-GATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
AATTACCTTCGTAGTCTCGAGTGTTTTGTAATCTCTCGAAAAGTTGTATAAGTGTTTGGAATTCTATATTTTTATAATTTAATAT-----AGTTAATTTGTAATTTTAAAAAATTATTCTTAGCATT

Size

Hit Count

Total Norm

233

scf7180000302486:1980976-1981097 -

57.6

AAGCCACAAAATTCTCT-AGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
AGATTACAGTATTTTTTAATGATTTGAAATCACCTTAAAATGCGCTCAAGAGTATGCAATGAAATATGAAAACGGTCAATTACTTCTATATTTATCTTAAACCATCAATTGCTTAGA---CTATT

Size

Hit Count

Total Norm

174

scf7180000302334:126509-126622 -

57.32

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACAT--ACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
A-------AAATTCTCGAAGATTTGAAAACTCTTTAAAAGTCGACTAAAAGTAGGCTATGAATTTTATACATTTGATTTCAAGCTTTAAAAATTTATCATAGCCA-----ACTTTTTACCAGCATT

Size

Hit Count

Total Norm

164

scf7180000302274:371998-372139 -

50.71

AAGCCACAAAATTCTCTAG-GATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTAT--------------ATATAC--ATACTTTGCAGCTTTTCAAGTGATT----TGAAATCACTAAAAGCCTTAAATATTGTT
AATATATTAAATTCCCGAGGGATTTTAAAACTCTTAAAAATGTGTCTAAAAGTATGCAATGGAATTTTTAAGGCACTACGTATATTGTTTTTTTAC-GATTCTCAGATAATTGGAGTAAAAATATTAAAA--CAAATACATTATA

Size

Hit Count

Total Norm

144

scf7180000302706:1386914-1387036 +

50.7

AAGCCACAAAATTCT--CTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGT---GTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTG---------------------------AAATCACTAAAAGCCTTAAATATTGTT
AAAAAACAAGATACATTTTTAAATTTAAA------TAAAGATATAATTAAATTACATATAAATAAATAAATATATATAAATTAAT---------------TAAATTAGTAAGCTTTAGTTTGCCCACAAAAATG--------AATAGAATA----T

Size

Hit Count

Total Norm

scf7180000302469:988239-988339 +

46.7

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTT-----GAAATCACTAAAAGCCTTAAATATTGTT
AAAATA-------TTATTTAATTTAAAAATTTTTTG------TTTTAAATATATAAAATATTATTTA------A---------TTTAAAAAAATTCAACCAAAAATATATAAAAATCTTAATTGTTTTT

Size

Hit Count

Total Norm

120

scf7180000302685:518631-518765 +

46.46

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGA-------ATGCTATATATACATACTTTGCAGCTTTT-CA--AGTGATTTGAAATCACTAAAAGCCTT-AAATATTGTT
CATCATTAAAATTCTCAAAATTTTATAAAATTTTCAATTTCTAACTAAGTATGCAGAGTTGTTAACCTTATAAAAACTAACATAACACCGTTTTCAAAAGTAAAATTAATGCATTTTTGACCGAGTTATGAATTT

Size

Hit Count

Total Norm

173

scf7180000302313:236484-236620 -

46.15

AAGCCACAAAATTCTCTAGGATTTAAAAACTCT--TGAAAATGTGCCT-------------AAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
AAATAAACAAATTTTCCAAATTCTTAAGAATCAGATGATAAGGTTTCCTTTTTGGGGAATTTTGAGCAT--TACATGAAAAATACATTTTTAGAATATATTAAATAAATTTGGAATCATTAAATATTTATAATTCTCTT

Size

Hit Count

Total Norm

scf7180000302610:495123-495227 +

45.9

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATG--GAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
ATTTA-T--------------------ATATTTTTAATATTTATTCATATATTATTAATATTTTATTAATATTTATTTGTATTTATTTTTATTAATTTGAATTTATTTAAATTATTTTGTATTTAT

Size

Hit Count

Total Norm

scf7180000302401:703690-703795 +

41.73

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTG--CCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAAT-ATTGTT
AAGTAATAAAAATATATAAAAATAAAGCATTCCCTAAGCTGTAATTCTAAGCGTAAAGAAAC-TGAA----ACTCTGTTGTTGCATTTTA----------------TAGAGCCCCTAAAAATATATA

Size

Hit Count

Total Norm

188

scf7180000302384:101218-101354 -

41.19

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTG---------AAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTT---------TT-----CAAGT-GATTTGAAA---TCACTAAAAGCCTTAAATATTGTT
AGAAAATGTG----------GTTTAAGGAGTATTACTTTCATTT----ATTGCTATAATGTAGTAAGTATTACTTATACGAAAGAGAAAATGTTATTGAAATGCCAAGAAAGGTAGGTTTAAAGCCATAAATGAAATCTGTAAATAATTTT

Size

Hit Count

Total Norm

158

scf7180000302255:257592-257682 -

40.76

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
ACT---------------------------TTTTAAAAAATACCCTTTTTGTAAGGGAAATTATTTATCAAACCAAAACAACACATTTTTTAATTTAAA------AAAATGTATAAAGATTGTT

Size

Hit Count

Total Norm

scf7180000302307:111026-111120 +

40.46

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
TG-----AAGAGCCCTTAAGACTTAGCAATTT-----------------------GAAT-TTTTTAATAGTTACTAAGCAAAGTATAAAGTATTTGTCAACTATTTTTATTAACAACTATTATT

Size

Hit Count

Total Norm

123

scf7180000302685:806536-806632 +

39.44

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
A--------------TCAGAATTTGTA-------------ATACCCTGTAATATGAAGTTTATAATATATATATTTTATGTTTAATTTAAAATATTATATTAATTAAATTTATTGAATATTTTT

Size

Hit Count

Total Norm

scf7180000302271:449703-449809 +

37.29

AAGCCACAAAATTCTCT----------AGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
TAGTTTTAAGACTATTTTTATAAAAATAAAACATAGAAAACTCAAAAGAAATTTTAAAAG---------------------------GTTTTTTATTAATTAATTAAATTTGAAAAGAAATTTCAAATAAAATT

Size

Hit Count

Total Norm

scf7180000302570:233431-233517 +

36.81

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
CAG-----AAATTGTTGAAGATTTGAAAACTCTTGAAAACAAGCCTAAAAGTA-----TGCTACAAATATTTACATCAAAATTAATCT---------------------------AATTTTGAT

Size

Hit Count

Total Norm

scf7180000302475:1881892-1882048 +

35.72

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTG--------------CAGCTTTTCAAGTGATTTGAAAT----------------------CACTAAAAGCCTTAAATATTGTT
GAGAACTTTGATTCCCCAGAAAGGAAACATTCTCAAATACCTAATTATAAATAAGACTTACT---TCAACATACTTTAACAAAGCTGAACAGCTCCTTTCTAAATGGGTCAAATTGAAAGTTTCAAACCTTGACACCTTTTTATAAATTAAAATATTATT

Size

Hit Count

Total Norm

scf7180000302544:1550905-1550971 +

34.22

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTT-TGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAAT---ATTGTT
-----------------------------------------------------------GCTTTAAACACATATTTATGCTGATTTTAA--TGCACTGCAAACAATTTCGGAACTAAATTAAATTGTT

Size

Hit Count

Total Norm

244

scf7180000302577:475173-475353 -

29.42

AAGCCACAAAATTCTCTAGGATTTAAAAAC-------TCTTGAAAATGTGCCTAA----GTGTATGGAATGCTA--------------------TATATACATACTTTGCAGCTTTTCAAG-TG------ATTTGAAATCA---CTAAAAGCCT----------------TAAATATTGTT
AAAAAAAATAATTTTTAAGGCTTTAGGGTTTAATATAAATTATAAATACATTTAAATAATTTTAAGGAATTTTTTAATTTAAATTAAAATTAAAAGTAAATATTTTTGAAAGCTTTTAGAAATTAGTTAAGTTTAAAATTAGTTTTAAAAGCTTTTTAATGATTTATTATTTTGTATTATT

Size

Hit Count

Total Norm

171

scf7180000302313:93265-93306 -

22.95

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
----------------------------------------------------------------------------------TTTCTGATTGTTTTGATATGATAAATAATCCTAACTATTGTT

Size

Hit Count

Total Norm

105

scf7180000302639:1784456-1784518 +

16.66

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
AATCAAGA------TCTTGGTTTTTAAAAC-CTTTAAAGAGTAACTGA------------------------------------------------------ACTAACCCCAATAGACAGTTTA

Size

Hit Count

Total Norm

droAna3 - 15 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scaffold_13248:2394513-2394634 +

49.24

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGT-GATTTGAAATCACTAAAAGCCTTAAATATTGTT TAGTGGCAGGATACTAGAGGATTAAAAAACTTCACAGAATACATTTTCTTTTAAGAAAAGTTGGAATTTTTAGATT---AGCTTTTTGTTTTAAACAAATTATATTTGAAACTATGGGTTCTATC	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
............................................................TTGGGATTTTTAGATC---AGC...........................................	19	1	5.00	0.00	5.00	0.00	0.00
............................................................TTGGATTTTTTAGATC---AGC...........................................	19	2	2.00	0.00	2.00	0.00	0.00
...........................................................GTTGGGATTTTTAGATC---AGC...........................................	20	1	2.00	0.00	2.00	0.00	0.00
...........................................................GTTGGGATTTTTAGATC---A.............................................	18	1	2.00	0.00	2.00	0.00	0.00
.....................................................................TTTGATT---AGCTTTTTGGT...................................	18	2	0.50	0.00	0.50	0.00	0.00
....................................................................GTTTGATT---AGCTTTTTGTT...................................	19	1	1.00	0.00	1.00	0.00	0.00

240

scaffold_13337:11687169-11687287 -

47.25

AAGCCACAAAAT--TCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATAC---------------ATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT ACACTCCGCAATGATTATTAAAAGCAAATACTTTTTGCAAA-AT-----------------GATAAACAAATCACTTCAAAGCCATTGAACTTGGAAAGCTTT----TAATTAAAGATAGTTGGAATTTATTAATATTTAT	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
.......GCAATGATTAATAGAAGCA...................................................................................................................	19	1	3.00	2.00	0.00	0.00	1.00
.......GTAATGATTATTAGAAGCA...................................................................................................................	19	1	2.00	2.00	0.00	0.00	0.00
.......GTAATGATTAATAAAAGCA...................................................................................................................	19	1	2.00	2.00	0.00	0.00	0.00
.........AATGATTAATAAAAGCAATT................................................................................................................	20	2	0.50	0.00	0.00	0.50	0.00
......CGCAATGATTAATAGAAGC....................................................................................................................	19	1	1.00	0.00	0.00	0.00	1.00

148

scaffold_12916:8233357-8233466 -

47.01

AAGCCACAAAATTCTCTAGGATTTAA-------AAACTCTTGA--AAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT AAACCCTGTTATTGTTAATGAAAAAATTTACTTTAACTCTTACTTAAGTGTGCCTCCGAGA-GGGAATCTTATCTTTAAGTAGTTACCA---TTTCCAG-----------------AAACGAAAACT--ACTA	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
.................ATGAAAAAATTCATTTTA..................................................................................................	18	2	0.50	0.00	0.00	0.00	0.50
......TGTTAGTGTTxATGAAAAA............................................................................................................	18	1	1.00	0.00	0.00	1.00	0.00
...................GAAAAAATTTTTTTTAACTC..............................................................................................	20	1	1.00	0.00	0.00	1.00	0.00

177

scaffold_13117:4650463-4650574 -

45.21

AAGCCACAAAATTCTCTAGGATTTAAA---------------------AACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT AATTCTCAA-ATTCTCTGTTAG---AAAAGGTAGTTGGCACATCTGGCTACTCTAAAAAGTGCTCAGAAACGTATTTA--------AACACGTGCTTT--------------TGGTTGAAATCTCAAAAA-------GTGATGCT	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
......................................................................................AACAxGTGCTCT--------------TGGTTGAA.........................	19	1	1.00	0.00	1.00	0.00	0.00
........................................................................................................................ATCTCAGAAA-------GTGATGTT	18	1	1.00	1.00	0.00	0.00	0.00

scaffold_12916:7641066-7641177 +

45.16

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT TAGTCAGAATTTTCTCCGAAAAACGAGAAAATTA-AAAAATTACATTTATAATTCGTACAAAAAAAAAAACAATTTTGAAACTCTAC--CCGATTTGAAAACAT---------TTAAAAGTGTG	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
................................................................AAACAACAATTTTGAAACA.........................................	19	1	1.00	0.00	0.00	0.00	1.00

247

scaffold_13337:16996093-16996203 -

42.41

AAGCCACAAAATTCTCTAGGATT-----------------------TAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT AATT--TGAAATTCTCTGTGATAAGTTTTGGTTTGTGGTGATAGGCTTGGAACT----AAAACTTTGTTATGTGTGT---GTGCCAAATCCACAAAT-----------------------AAATCGTTGTAATTCTTTCATTT----	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
...........................TTGGCTTGTGGTGATG........................................................................................................	16	1	1.00	0.00	0.00	1.00	0.00
.................................................GAACT----AAATATTTGTTAT............................................................................	18	1	1.00	0.00	0.00	0.00	1.00
..........................TTTGGGTTCTGGTGATAG.......................................................................................................	18	1	1.00	0.00	0.00	1.00	0.00

167

scaffold_13117:3497239-3497339 -

41.72

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTG-AAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
AAACAAAAAATATTACAAGGAAAAAAAGAAA---GAAAAATGAGAA-----------ACAACTAAATATATACATTA------ATTATAGGAGACTTTAAAACATTA----TTTAAACGACTTTT

Size

Hit Count

Total Norm

V105
Male body

V106
Head

V055
Unknown

V039
Embryo

222

scaffold_13337:3519573-3519679 -

41.44

AAGCCACAA---AATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAAT----------GCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT GGTCCTTAAACAGGTCCTCCGGAAACTGATAACTCTTTAA-----GCCTAAGCCTATTAACTAAAAAAAAAAA-------------------------CTAAAAACTCCGAAATTGCGAAGATTTTTTAAGCCTAGC	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
................................................................AAACAAAAA-------------------------CTAATAACTCC............................	20	1	1.00	0.00	0.00	0.00	1.00
..............................................................AAAAAAAAAAA-------------------------CGGAAAA................................	18	19	0.05	0.00	0.00	0.00	0.05
......................................................................AAA-------------------------CTAAAAACTCCGAAATT......................	20	1	1.00	0.00	0.00	0.00	1.00
.....................................................CTATCAGCTAAAAAAAAAAA-------------------------.......................................	20	1	1.00	1.00	0.00	0.00	0.00

158

scaffold_13047:1627720-1627859 -

41.08

AAGCCACA---AAAT-------------------------TCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT AAATCATATAAAAATTCTCAGTAATTCCCTTAATACAATTTCCATATCATTTGACTGCCACTGAAAAA--AACTGGGTGTATATAATA-----TATA---GCCCTATACCTTCTTGGATTTCCTCAGA--AATAAAACCCTCAAGACCCTCT	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
................................................................................................................................................GACCCTAT	18	10	0.10	0.00	0.00	0.00	0.10

scaffold_12929:1996582-1996667 +

35.65

AAGCCACAAAATTCTCTAGGATTTAAAAAC------TCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
ATTACTTAAACTTTTTTTTAACTCCTAACTAAAATATAATAATAATATTTTTAAG------AAAATCT--------------------------------------TTCATAAAATCCATATATACCCAC

Size

Hit Count

Total Norm

V105
Male body

V106
Head

V055
Unknown

V039
Embryo

scaffold_12929:2451680-2451731 +

28.69

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT A--------------------TTTAAATACTGTAATACTTGTGCGTGTGTATATAGGTGGATATATATATAT----------------------------------------------------	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
.................................AATACTTGTTCGTGCGTA.........................................................................	18	1	1.00	0.00	0.00	1.00	0.00
.......................................................ATTGGATATATATATAT----------------------------------------------------	21	9	0.11	0.00	0.00	0.00	0.11
...............................GTGCTACTTGTGCGTGTG...........................................................................	18	1	1.00	0.00	0.00	1.00	0.00
.........................AATTCTGTAATACTTGTGGGT..............................................................................	21	1	1.00	0.00	1.00	0.00	0.00

scaffold_12943:4771201-4771248 +

20.31

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATAC-----TTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT A------------------------------------------------------------TATATATGTATATTAAAATTTACAGATTT---------------------AAAGCCTAGAATAAAATA	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
..............................................................ATAGAxGTATATTAAAATT................................................	18	2	0.50	0.00	0.00	0.50	0.00
.............................................................TTTATATGGATATTAAAAT.................................................	19	1	1.00	0.00	0.00	0.00	1.00

scaffold_12929:1911272-1911300 +

10.8

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT TATAGA------TTTATAAGATT------------------------------------------------------------------------------------------ACATAATTTTT	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
GATAGA------TTTATATGATT------------------------------------------------------------------------------------------AC.........	19	1	1.00	0.00	0.00	1.00	0.00
.ATAGA------TTTATATGATT------------------------------------------------------------------------------------------ACA........	19	1	1.00	0.00	0.00	1.00	0.00
GATAGA------TTTATATGATT------------------------------------------------------------------------------------------A..........	18	1	1.00	0.00	0.00	1.00	0.00

scaffold_13337:9300441-9300450 +

5.74

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
AG------------------------------------------------------------------------------------------------------------------ATATTAAT

Size

Hit Count

Total Norm

V105
Male body

V106
Head

V055
Unknown

V039
Embryo

None

255

scaffold_13340:3527491-3527492 -

1.64

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
TT--------------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

V105
Male body

V106
Head

V055
Unknown

V039
Embryo

None

droBip1 - 10 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scf7180000396429:87234-87334 +

49.18

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
TA-----------------------AAAATTGAAGAAATAATAATAATGTGAAAAAAATAATAAATAAAAATAATTTAAATATTTTAAAACATTTTGAAATAATAAAGTTAAAAAAATTAAATA

Size

Hit Count

Total Norm

197

scf7180000396709:93532-93668 -

42.67

AAGCCACAAAATTCTCTAGGATTTAAAA-----------------ACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT------------
AAGAGCAAAAAAAATGCAAAAAACAAAAATTTTGCAAAGAAAAAAACGCTAAAAAA---------AGGAGAAGAATCCCATGAACAAA-AGTATAAAGTATTTT---TGAGATGAAATCGAGAAGAAC---AAATATTATTAATTTTCAAAAA

Size

Hit Count

Total Norm

scf7180000395895:28788-28893 +

41.41

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCT----AAGTGTATGGAAT--GCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
GACCA----------------TTTGGAAGATTT-AAAAATAAGCTTTTATAGTTTTGGACAACAAAAAAAATATAAAAACCTACTTCTTTTTAA-GG------GAAATGTTAAAAAAAAAGGATATTCCT

Size

Hit Count

Total Norm

116

scf7180000392902:59632-59765 -

41.33

AAGCCACAAAATTCTCTAGGA--------TTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGAT-------TTGAAATCACTAAAAGCCTTAAATATTGTT
GGATAACAAAAGATATTATATTTTTATTAGATTATTATTATTATTATTAGATCTAAATATAATAAAGATTAT-----TATATTTTTTAGTTTATCAAAATATTTATAATTTAATTTTGTTTTAATATATATATATTTAG

Size

Hit Count

Total Norm

204

scf7180000396728:855592-855739 -

39.33

AAGCCACAA-------------AATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACA--TA-----CTTTGCAGCTTTTCAAGTGATTTGAAATC----------ACTAAAAGCCTTAAATATTGTT
AAGTAACAAGTAGTCTGTCAAGGATTCTCTGTAATTT----CTTCTTGGAAACATTTTTATATTTT-TTAATATTACTTAAATAACTAATTGGTTTTACA-TTTTTAAAGTATTTTTTATTCTTTTTTAAAATCTGTCACTTTTAAACAACTTT

Size

Hit Count

Total Norm

117

scf7180000395450:436899-436998 -

37.68

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
CGAGCAAAAAGCTTTATAATTTTCAAAAATCATTAAAGT---ACTTTG----ATCTGGCAATA-----------TCTACAATCCATTAACCGATTCTGTATAA------TCCGTATCAGCCCTT

Size

Hit Count

Total Norm

scf7180000396371:1200868-1200922 +

25.13

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
---------------------------------------------------------------TGTAAATATGCAGTAAAGTACATCATTTGATCTAAAAACA----AAG--TCATATCTCGTT

Size

Hit Count

Total Norm

192

scf7180000396707:665142-665193 -

22.95

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAAT-----CACTAAAAGCCTTAAATATTGTT-------
------------------------------------------------------------------------------------TTTAATTGACTTGAAATTTTGACACAATATTCTTCAGATATTATGCATTCAA

Size

Hit Count

Total Norm

181

scf7180000396615:155997-156037 -

15.28

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
---------------------------------------------------------------------CGTTCTTAGCATTGTTTTTTGTTTTTTGAATTTGT--------------TTTTTT

Size

Hit Count

Total Norm

scf7180000396543:372423-372461 +

14.75

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
CAAATAAAACAAAGTCGAGGATATC-------------------------------------------------------------------------------------CCCAGGACATCCTC

Size

Hit Count

Total Norm

dp4 - 14 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

278

chr3:17930285-17930408 -

53.0

AAGCCACAAAATTCTCTAGGATTTA---AAAACTCTTGAAAATGTGCCTAAGTG---TATGGAATGCTATATATACA-TACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCC---TTAAATATTGTT A-CCAACACAATTTTTGAATATTTTGGGAAAATACTAGAAATGGTA--TAAATACTAAAAAGAAAGATAGAAATACCATTCTA-G-AAATTGTC------TCTGAATTCTTTGGTATCCCAGTTAATTTTGGTT	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
...............................................................................TTTA-G-AAATTGTC------TCCGA.............................	18	1	1.00	0.00	1.00	0.00	0.00

319

chrXL_group1a:5405963-5406096 -

46.17

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTA----------------TGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
AACCAACCAACTTTTTCAGGACCCATTTACTTACAAAAAACAGCTTTTCGGTAAGGTCTTTGGTATCTTTGGGATGGCA-AAATTCGTACTCTTTCGT-TTCCAAATGGTTTGAAAACATGAAAA----CAGCTGTTTTC

Size

Hit Count

Total Norm

V112
Male body

V043
Embryo

V051
Head

M022
Male body

chr2:1817935-1818068 +

42.7

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTA-------AGTGTATGGAATGCTATATA------TACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAA--AAGCCTTAAATAT------TGTT AATCCGCAAGC--------GATTTGAGTGCCCGTGTA--TTGACTTGAGTTGAGATCGTAAAGCACGCTATATCGTAAATTATGTACCATGCCAGCTCTCGAGT-ATTCGTAAACGTAAACGAGATCTTGAGTTTTTAATTAGAC	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
.....................TTTGAGTGCCCGTGTA--TTGAC.....................................................................................................	21	2	1.00	1.00	0.00	0.00	0.00
.......................TGAGTGCCCGTGTA--TTGACTT...................................................................................................	21	2	1.00	1.00	0.00	0.00	0.00
......................TTGAGTGCTCGAGTA--TTG.......................................................................................................	18	2	0.50	0.00	0.00	0.50	0.00
................................................GTTGAGATCGTAAAGCACGCT............................................................................	21	2	0.50	0.50	0.00	0.00	0.00
...........................TGCCCGTGTA--TTGACTTGAG................................................................................................	20	2	0.50	0.50	0.00	0.00	0.00
...............................................................................TTGTGTACCATGCCAGCTCTC.............................................	21	2	0.50	0.00	0.50	0.00	0.00
....................ATTTGAGTCCCCGTGTA--TTG.......................................................................................................	20	2	0.50	0.50	0.00	0.00	0.00
.......................TGAGTGCTCGAGTA--TTGACT....................................................................................................	20	2	0.50	0.50	0.00	0.00	0.00
.......................TGAGTGCTCGAGTA--TTGACTT...................................................................................................	21	2	0.50	0.50	0.00	0.00	0.00
................................................GTTGAGATCGTAAAGCGCGCT............................................................................	21	2	0.50	0.50	0.00	0.00	0.00

298

chr4_group3:3253233-3253359 -

42.16

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTA--AGTG---T------ATGGAATGCTATATATACATACTTT---GCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCC-TTAAATATTGTT TAATAATAAATTTCCATTAAA----AAAACCATAATAAATACAAATATCAGTGATATTTTGTTGTCGAACATTTTATTCATTCAACCTTTAATTACTCCCCAAATATTTCGA-----CCAAAATTTTTCAAA---TGCT	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
..................AAA----AAAATCATAATAAATGCA................................................................................................	21	1	1.00	0.00	1.00	0.00	0.00

199

Unknown_group_744:535-668 +

42.07

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTA-------AGTGTATGGAATGCTATATA------TACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAA--AAGCCTTAAATAT------TGTT AATCCGCAAGC--------GATTTGAGTGCCCGTGTA--TTGACTTGAGTTGAGATCGTAAAGCACGCTATATCGTAAATTATGTACCATGCCAGCTCTCGAGT-ATTCGTAAACGTAAACGAGATCTTGAGTTTCTAATTAGAC	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
.....................TTTGAGTGCCCGTGTA--TTGAC.....................................................................................................	21	2	1.00	1.00	0.00	0.00	0.00
.......................TGAGTGCCCGTGTA--TTGACTT...................................................................................................	21	2	1.00	1.00	0.00	0.00	0.00
......................TTGAGTGCTCGAGTA--TTG.......................................................................................................	18	2	0.50	0.00	0.00	0.50	0.00
................................................GTTGAGATCGTAAAGCACGCT............................................................................	21	2	0.50	0.50	0.00	0.00	0.00
...........................TGCCCGTGTA--TTGACTTGAG................................................................................................	20	2	0.50	0.50	0.00	0.00	0.00
...............................................................................TTGTGTACCATGCCAGCTCTC.............................................	21	2	0.50	0.00	0.50	0.00	0.00
....................ATTTGAGTCCCCGTGTA--TTG.......................................................................................................	20	2	0.50	0.50	0.00	0.00	0.00
.......................TGAGTGCTCGAGTA--TTGACT....................................................................................................	20	2	0.50	0.50	0.00	0.00	0.00
.......................TGAGTGCTCGAGTA--TTGACTT...................................................................................................	21	2	0.50	0.50	0.00	0.00	0.00
................................................GTTGAGATCGTAAAGCGCGCT............................................................................	21	2	0.50	0.50	0.00	0.00	0.00

327

chrXL_group1a:9023258-9023318 -

32.54

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT TATTTAC----CTCTCTTGAGTTT-----------------CG----------------------------------------TTTTAGTCT--TTTTTAACACCTAAAGCCCTAGATATAGTC	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
...TTGC----CTCTCTTGAGTTT-----------------CG----------------------------------------TT.......................................	21	1	1.00	1.00	0.00	0.00	0.00

331

chrXL_group1e:495058-495112 -

30.33

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAG-CCTTAAATATTGTT
ATG----------------------------------------------------------------------GTTTACGTTTATTCTAAAGATTCGAAACATCTAAAAGTCCTGAAAGATGGTT

Size

Hit Count

Total Norm

V112
Male body

V043
Embryo

V051
Head

M022
Male body

116

chrXL_group1e:312-368 +

22.63

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT TACTTATATCT---------------------------------------------------------GGTCATATCGTAGTCTTGCTAGGGTCATTAGTGAATAAAATGTCAT----------	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
..........T---------------------------------------------------------GGTCATATCGTAGTCTTGCTAGGGT...............................	26	1	2.00	1.00	1.00	0.00	0.00
...TTATATCT---------------------------------------------------------GGTCATATCGTAGTC.........................................	23	1	1.00	0.00	1.00	0.00	0.00
........TCT---------------------------------------------------------GGTCATATCGTAGTCTTGCTAGGG................................	27	1	1.00	1.00	0.00	0.00	0.00
..........T---------------------------------------------------------GGTCATATCGTAGTCTTGCTAGGG................................	25	1	1.00	1.00	0.00	0.00	0.00
..............................................................................GAGTCTTGCTAGGGTCTTTAGTGA......................	24	1	1.00	1.00	0.00	0.00	0.00
......................................................................................CTAGAGTCGTTAGTGAATA...................	19	1	1.00	0.00	0.00	1.00	0.00
...TTATATCT---------------------------------------------------------GGTCATATCGTAGTCTTGC.....................................	27	1	1.00	1.00	0.00	0.00	0.00
......TATCT---------------------------------------------------------GGTCATATCGTAGTCTTGC.....................................	24	1	1.00	1.00	0.00	0.00	0.00
.................................................................................TCTTGCTAGGGTTATTAGTGAATAAAA................	27	1	1.00	1.00	0.00	0.00	0.00

344

chrXL_group1e:6567094-6567141 -

20.49

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTG------TT TTGTGAC----------------------------------------------------------------------------------GCGACTAAAAACCATTAAGAACTAGAAACAGCAACAATGCT	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
....................................................................................................TCATTAAGAACTAGAAACAGCAACAA....	26	1	1.00	1.00	0.00	0.00	0.00

281

chr4_group4:5471852-5471892 -

18.67

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
AAT-------------------------------------------------------------------------------TTTCAAAGCGGTGTAGAACAAACAAAA----TAAATATCTGT

Size

Hit Count

Total Norm

V112
Male body

V043
Embryo

V051
Head

M022
Male body

283

chr4_group4:6344212-6344233 -

11.48

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
A------------------------------------------------------------------------------------------------------TTAGACTTCTTGAATATAATT

Size

Hit Count

Total Norm

V112
Male body

V043
Embryo

V051
Head

M022
Male body

None

127

chrXL_group1e:3931565-3931576 +

7.57

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
---------------------------------------------------------------------------------------------------------------CTTAAATAC-ATT

Size

Hit Count

Total Norm

V112
Male body

V043
Embryo

V051
Head

M022
Male body

None

120

chrXL_group1e:1513173-1513183 +

6.56

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
CAGCAACAACA-----------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

V112
Male body

V043
Embryo

V051
Head

M022
Male body

None

129

chrXL_group1e:3960851-3960857 +

3.28

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
TGTTTGT---------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

V112
Male body

V043
Embryo

V051
Head

M022
Male body

None

droPer1 - 12 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

182

super_73:125535-125658 +

53.0

AAGCCACAAAATTCTCTAGGATTTA---AAAACTCTTGAAAATGTGCCTAA---GTGTATGGAATGCTATATATACATACTTTGCA--GCTTTTCAAGTGATTTGAAATCACTAAAAG--C-CTTAAATATTGTT
A-CCAACACAATTTTTGAACATTTTGGGAAAATACTAGAAATGGTAT--AAATACTAAAAAGAAAGATAGAAATACCA---TTCTAGAAATTGTC------TCTGAATTCTTTGGTATCCCAGTTAATTTTGGTT

Size

Hit Count

Total Norm

V111
Male body

V042
Embryo

V050
Head

V057
Head

M021
Embryo

254

super_6:2458282-2458345 -

30.33

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCT-AAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
GGGGAAGAAAATTATATAATAATGAAAAACTCATGAGCACGCGCGTTGGATGCTGGAGATGCCA-------------------------------------------------------------

Size

Hit Count

Total Norm

V111
Male body

V042
Embryo

V050
Head

V057
Head

M021
Embryo

125

super_18:873517-873581 +

27.05

A-AGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTT---TTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT ATAGGTATATGATTTCTGT---------------------------------------------------------------CCTAGATACCAGTAAGTACAAGCTAGCAGAGGTCTTGTAGAGTATT	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
................................................................................................AGTACAAGCGAGCAGAGGTC............	20	1	1.00	0.00	0.00	0.00	1.00	0.00

super_7:628707-628746 +

25.41

AAGCCACAAAATTCTCTAGGATTTAAAA-ACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
AGGCAACAAAATTCTCTATTACTTAAAACATTTTTGGAAA-------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

V111
Male body

V042
Embryo

V050
Head

V057
Head

M021
Embryo

144

super_22:1391412-1391469 +

25.41

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGT--GATTTGAAATCACTAAAAGCCT-TAAATATTGTT
---------------------------------------------------------------------CCTACCTTGCTGGCTATCAAAGGGTATATGCCGCCGCCTCGAGCTTCTGAAAGTTTTC

Size

Hit Count

Total Norm

V111
Male body

V042
Embryo

V050
Head

V057
Head

M021
Embryo

115

super_16:548838-548875 +

22.95

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
AAACCACAAAAAAAACTAAAAACTAAAAACTGTTGAAA--------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

V111
Male body

V042
Embryo

V050
Head

V057
Head

M021
Embryo

super_6:4222163-4222206 +

21.31

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTA--AATATTGTT
----------------------------------------------------------------------------------TTTGTACACGGTTTAAAATCTTTAAATATTTTACCAAAGTTGTC

Size

Hit Count

Total Norm

V111
Male body

V042
Embryo

V050
Head

V057
Head

M021
Embryo

super_13:2060476-2060506 +

18.03

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
---------------------------------------------------------------------------------------------TTCGAAGTCCCCAAAAGCCTTCAAAGTTCTA

Size

Hit Count

Total Norm

V111
Male body

V042
Embryo

V050
Head

V057
Head

M021
Embryo

191

super_77:133546-133573 +

13.93

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
------------------------------------------------------------------------------------------------GAAATCAAGAAAAATATATAAAATAAAT

Size

Hit Count

Total Norm

V111
Male body

V042
Embryo

V050
Head

V057
Head

M021
Embryo

None

119

super_17:867408-867423 +

9.02

Size

Hit Count

Total Norm

V111
Male body

V042
Embryo

V050
Head

V057
Head

M021
Embryo

None

264

super_8:2622773-2622785 -

7.38

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
---------------------------------------------------------------------------------------------------------------CTTTAAGATTAAT

Size

Hit Count

Total Norm

V111
Male body

V042
Embryo

V050
Head

V057
Head

M021
Embryo

None

270

super_9:1903983-1903987 -

3.28

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
-----------------------------------------------------------------------------------------------------------------------TTTTT

Size

Hit Count

Total Norm

V111
Male body

V042
Embryo

V050
Head

V057
Head

M021
Embryo

None

droWil1 - 20 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

206

scaffold_181130:13457303-13457435 -

50.45

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCT-----------------ATATATACATACT-TTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAA----------------ATATTGTT AAGGCGCACAGTTCTTCAGCAATT-------------------TTCAGGCGAATGAAATGTTTTGTAAAGAATTGGTATATAAATACCTACAAATGGAATTTTTCAATT------AAACGGCCAAGAGCCCAAAAATAAATAAATATAGACTAATATT	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
..................................................................AAAGAATTGGTAxATAAAAA........................................................................	19	2	0.50	0.00	0.50	0.00	0.00
..........................................................................................CAATTGGAATTTTTCACTT------...........................................	19	1	1.00	0.00	1.00	0.00	0.00

scaffold_180777:1037006-1037117 +

47.92

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATA-------TACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAA---AGCCTTAAATATTGTT AC-------AATTTTAACAAATTTAACA-AACTTAAGATTTTGACAAAGTTTATGGAA-ACTAAATAAAGAGTATAGAAAGTT--------------TGTTTTAGACTAGCTCAATCATTTCTTCGCTTTTTTT	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
...............................................................AATAGAGxGTATAGAAAGT....................................................	18	1	1.00	0.00	1.00	0.00	0.00
..........ATTTGAACAAATTTAACC-.........................................................................................................	18	2	0.50	0.00	0.00	0.00	0.50
......................................................................AGTATAxAAAGTT--------------TTTTTT...............................	18	3	0.33	0.00	0.33	0.00	0.00
..................................AAGATTTTGACGAAGATT..................................................................................	18	1	1.00	0.00	1.00	0.00	0.00

scaffold_180727:1647304-1647423 +

47.36

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTA----AAAGCCTTAAATATTGTT------- CAGGAAAAAAAAACTTTAGTA---ACCAATTATTTGTACTGTATTTA------------TATATATATAAATATTTTTTTTTATTAAATATAACTATAACTGCTTAAGAAGAAGCATTGAAGATTGTTGTTAGAT	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
....................A---ACCAATTATTTGTACTGT.............................................................................................	19	1	2.00	0.00	0.00	0.00	2.00
........................................................................................................TAAGAAGAAGCATTGAAGATT..........	21	1	2.00	0.00	1.00	1.00	0.00
CAGGAAAAAAAAACTTTAGTA---ACC............................................................................................................	24	1	2.00	0.00	0.00	0.00	2.00
.......................................................................................................TTAAGAAGAAGCATTGAAGATT..........	22	1	1.00	1.00	0.00	0.00	0.00
..................................................................................................................CATTGAAGTTTGTTGCTAGA.	20	1	1.00	0.00	1.00	0.00	0.00
.........AAAACTTTAGxA---GCCAATT........................................................................................................	18	1	1.00	0.00	1.00	0.00	0.00
...............................................................................................ATAACTGCTTAAGAAGAAG.....................	19	1	1.00	1.00	0.00	0.00	0.00
............................................................ATATATATAAATGTTTTTTGT......................................................	21	1	1.00	0.00	1.00	0.00	0.00
.......................................................................AATTTATTTTTATTAAAT..............................................	18	8	0.13	0.00	0.00	0.00	0.13
..................................................................................................................CATTGAAGATTGTTGTTAGAT	21	1	1.00	0.00	0.00	1.00	0.00
...................................................................................................................ATTGAAGTTTGTTGCTAGA.	19	1	1.00	0.00	0.00	0.00	1.00
..................................TGTTGTGTATTTA------------TATATA......................................................................	19	5	0.20	0.00	0.20	0.00	0.00
............................ATTATTTGTACTGTATTTA------------A...........................................................................	20	1	1.00	0.00	1.00	0.00	0.00
............................................................................................................AAGAAGCATGTAAGATTG.........	18	1	1.00	0.00	1.00	0.00	0.00
...............................................................................................ATAACTGCTTAAGAAGAAGC....................	20	1	1.00	1.00	0.00	0.00	0.00
........................................................................................................TAAGAAGCAxCATTGAAGAT...........	19	1	1.00	1.00	0.00	0.00	0.00
.......................................................................................................TTAAGAAGAAGCATTGAAGAT...........	21	1	1.00	0.00	0.00	1.00	0.00

138

scaffold_180708:1105677-1105802 -

47.05

AAGCCACAAAATTCTCTA----------GGATTTAAAAACTCT---TGAAAATGTGCCTAAGTGT----ATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT ATGCCGCCATGTCCACTAATTACCCCCAACGGCTAAAGTCTGTGATAGAAAGCAAGGCTAATTGGTTGAGTGAGAGGCTACAGA--GATGATTGGCGG-------AGTAATCG----TAATTAAAAGTGTTGTACATT--T	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
.............................................................................................................ATTG----TAATTGAAAGTGTT..........	18	1	22.00	0.00	21.00	0.00	1.00
............................................................................GCTACAGA--GAAGATTAGC.............................................	18	1	3.00	0.00	3.00	0.00	0.00
............................................................................GATACAGA--GATGATTAGC.............................................	18	1	2.00	0.00	2.00	0.00	0.00
..............................................................................................GCTG-------ATTAATCG----TAATTA..................	18	1	1.00	0.00	1.00	0.00	0.00
............................................ATATAAAGCAAGGATAAT...............................................................................	18	1	1.00	0.00	1.00	0.00	0.00
........................................................................AGAGGCTGCAGA--GATGTT.................................................	18	1	1.00	1.00	0.00	0.00	0.00
............................................................................GATACAGA--GAAGATTGGC.............................................	18	1	1.00	0.00	1.00	0.00	0.00

188

scaffold_181096:8281366-8281494 -

46.93

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATG---GAATGCTATATATACATAC-------TTTGCAGCT----T---------------TTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT AAACCAAAAAATTAT---------------------AACTACACACATATATATGTGTATATACCATATATATATATATATTATTTTACATGCAAAATTTGTGTGTATTTATATATATACATGTCAAAATCATTAAAATCGTGTGACT---TT	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
......................................CAACACAAATATATATGT.................................................................................................	18	3	0.67	0.00	0.00	0.00	0.67
........................................................................................................GTACTTATATATATGCATGT.............................	20	2	0.50	0.00	0.50	0.00	0.00
........................................ATACAGATATATATGTGT...............................................................................................	18	16	0.06	0.00	0.06	0.00	0.00
..................................................................................................TGTTGTGTATTTATATATA....................................	19	5	0.20	0.00	0.20	0.00	0.00
.......................................TACATACATACATATGTGT...............................................................................................	19	45	0.02	0.00	0.02	0.00	0.00
...................................................................ATAGATATATATATTAGT....................................................................	18	12	0.08	0.00	0.08	0.00	0.00
.................................................................................................TTTGTGTGTATTTATGTAG.....................................	19	2	0.50	0.00	0.00	0.50	0.00
.......................................................................................ACATxCAACATTTGTGTGT...............................................	18	2	0.50	0.00	0.50	0.00	0.00
............................................................ATAGCATATACATATATAT..........................................................................	19	11	0.09	0.00	0.09	0.00	0.00
.........................................................TATATACAATATATATATG.............................................................................	19	20	0.05	0.00	0.00	0.00	0.05
........................................................GTAGAxACCATATATATAT..............................................................................	18	1	1.00	0.00	0.00	0.00	1.00
................................................................................................ATTGTTGTGTATTTATATATA....................................	21	1	1.00	1.00	0.00	0.00	0.00
..............................................................ACCATATATATATATATATTGT.....................................................................	22	2	0.50	0.00	0.50	0.00	0.00
........................................ACACACATATATCTATGT...............................................................................................	18	11	0.09	0.00	0.09	0.00	0.00
................................................................................................................................TTCATTAAAATCGGGTGACT---..	20	1	1.00	0.00	1.00	0.00	0.00

scaffold_181108:1212157-1212265 +

43.25

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGAT--TTGAAATCACTAAAAGCCTTAAATATTGTT ACTCTATGGAATTCAAT------TAAGTACTTAAGAAAAAA-----AAAGGTTTGAAGTGTTT------TACATTTTAAAGTTATTCAAAAATTTAATGACAATGTCAACAAAAATAAACAATTAA	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
..TCCATGAAATTCAAT------TAA....................................................................................................	18	1	1.00	0.00	1.00	0.00	0.00
...................................AAAAAA-----AAAGGTGTGCAGT...................................................................	19	1	1.00	0.00	0.00	1.00	0.00
..............................................AAAGGTTTGAATTGTTT------A........................................................	18	1	1.00	0.00	1.00	0.00	0.00

scaffold_180698:2097221-2097357 +

42.95

A-AGCCACAAAATTCTCTAGGATTTAAAAA-CTCTTGAAA--------------ATGTGCCTAAGTGTATGGAATGCTATATATACATA-CTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT ACAGACGTACAAACACAAGGGGCTTGACAATTTCTTGCTGACAGAAAATCCATTGGGTTCCTTTCTAAATAGAAAAATATATAGTTGTCAAATTTAAAATCATCGATTAATTAGGGAGCAC----ATTCTAAAATAAAGTT	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
................................................................................GTAGTTGTCAAATTAAAA...........................................	18	1	2.00	0.00	2.00	0.00	0.00
................................................................................GTAGTTGTCAAATTAAAAA..........................................	19	1	1.00	0.00	1.00	0.00	0.00

scaffold_180777:1821916-1822051 +

42.87

AAGCCACAAA--ATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGC-------AGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGT---T ATAACAAAAATCATACTCTAAACTTTAACTAGCGTTAAAAACAAAACAAAAAAAAAACGACGATTTTTTTCCATTCGTTAATCAATGTAAATTTTTAAATAAGAAAAAAAAAGTGAAACAATAACCAATTAGTAAA	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
...................................................................................AATGTAAATTCTTAAAAAA..................................	19	1	2.00	0.00	2.00	0.00	0.00
..............................................................................................CTAAGTAAGAAAAAAAAA........................	18	3	0.67	0.00	0.67	0.00	0.00
.......................................AACAAAACAAAACAAAAGC..............................................................................	19	4	0.25	0.00	0.25	0.00	0.00
...................................TAAAAAGAAAACAGAAAAA..................................................................................	19	12	0.08	0.00	0.08	0.00	0.00
......................................AAACAAAACAAAAAGAAAACGA............................................................................	22	2	0.50	0.00	0.50	0.00	0.00
......................................AAACAAAACAAAAAGAGA................................................................................	18	15	0.07	0.00	0.07	0.00	0.00
...................................................................................AATGTAAATTCTTAAAAA...................................	18	1	1.00	0.00	0.00	0.00	1.00
....................................AAAAAAAAAACAAAAAGAAAAC..............................................................................	22	18	0.06	0.00	0.06	0.00	0.00
...................................TAAAAAGGAAACAAAAAA...................................................................................	18	13	0.08	0.00	0.08	0.00	0.00
......................................AAACAAAACAAACAAAAA................................................................................	18	9	0.11	0.00	0.11	0.00	0.00
.....................................AAAACAAAGCAAAAAAAG.................................................................................	18	9	0.11	0.00	0.11	0.00	0.00
..................................................................................................ATAAGAAAAAAACAGTGA....................	18	4	0.25	0.00	0.25	0.00	0.00
.......................................AACAAAACAACAAAAGAA...............................................................................	18	10	0.10	0.00	0.10	0.00	0.00
........................................ACAAAACAAAAAAAAAAGC.............................................................................	19	14	0.07	0.00	0.07	0.00	0.00
................................................................................................AAACAAGAAAATAAAAGT......................	18	5	0.20	0.00	0.20	0.00	0.00
................................................................................................AAAAAAGAAAAACAAAGT......................	18	19	0.05	0.00	0.05	0.00	0.00
.....................................AAAACGGAACAAAAAAAA.................................................................................	18	12	0.08	0.00	0.08	0.00	0.00
.................................................................................................AAAAAGAAAAAAAAAGAGA....................	19	45	0.02	0.00	0.02	0.00	0.00
......................................AAACAAAACGAAAAAAAAAA..............................................................................	20	41	0.02	0.00	0.02	0.00	0.00
......................................AAACAGAACAAAAAAAAAAA..............................................................................	20	36	0.03	0.00	0.03	0.00	0.00
.................................................................................................AAAAAGAAAAAAAAAGTA.....................	18	47	0.02	0.00	0.02	0.00	0.00
......................................AAAGAAAACAGAAAAAAA................................................................................	18	31	0.03	0.00	0.03	0.00	0.00
..........................................AAAAAAAAAAAAACACGAC...........................................................................	19	10	0.10	0.00	0.10	0.00	0.00
............................................AAAAAAAAAAAAACGACAA.........................................................................	19	41	0.02	0.00	0.02	0.00	0.00
.........................................................................................................AAAGAAAGAGAAACAATA.............	18	6	0.17	0.00	0.17	0.00	0.00
......................................AAACAGAACAAAAAATAA................................................................................	18	16	0.06	0.00	0.06	0.00	0.00
...................................AAAAAACAGAACAAAAAAAA.................................................................................	20	17	0.06	0.00	0.06	0.00	0.00
.....................................AAAAGAACACAAAAAAAAAA...............................................................................	20	23	0.04	0.00	0.04	0.00	0.00
..................................ATAAGAACAAAACAAAAAA...................................................................................	19	3	0.33	0.00	0.33	0.00	0.00
.....................................AAAAGGAAACAAAAAAAAAA...............................................................................	20	15	0.07	0.00	0.07	0.00	0.00
......................................AAAGAAAACAAAAAAAACA...............................................................................	19	37	0.03	0.00	0.03	0.00	0.00
.................................GTTAAAAAAAAAACAGAAAA...................................................................................	20	6	0.17	0.00	0.17	0.00	0.00
.......................................TACCAAACAAAAAAAAAA...............................................................................	18	30	0.03	0.00	0.03	0.00	0.00
.........................TAACTxGCGTTAAAAAAAAA...........................................................................................	19	2	0.50	0.00	0.50	0.00	0.00
.....................................AAAACAAAACAAAAAGAA.................................................................................	18	4	0.25	0.00	0.25	0.00	0.00
...................................TAAAAACAAAACAAAAGG...................................................................................	18	5	0.20	0.00	0.20	0.00	0.00
...................................GAAAAACAAAACAAAAGAAA.................................................................................	20	6	0.17	0.00	0.17	0.00	0.00
....................................AAAAAGACAACAAAAAAAAA................................................................................	20	17	0.06	0.00	0.06	0.00	0.00
............................................................................................TTTTAAAAAAGAAAAAAAA.........................	19	21	0.05	0.00	0.05	0.00	0.00
....................................AAAAAGAAAACAAAAAAA..................................................................................	18	16	0.06	0.00	0.06	0.00	0.00
......................................................................................................GAAAAAAAAAGGGAAAAA................	18	9	0.11	0.00	0.11	0.00	0.00
......................................AAAGAAAACAAACAAAAA................................................................................	18	44	0.02	0.00	0.02	0.00	0.00
.....................................AATACAAAACAAACAAAAAA...............................................................................	20	8	0.13	0.00	0.13	0.00	0.00
...................................TAAAAACAGAAAAAAAAAAAA................................................................................	21	20	0.05	0.00	0.05	0.00	0.00
............................................................................................TATAAAATAAGAAAAAAAA.........................	19	7	0.14	0.00	0.14	0.00	0.00
....................................AAAAATAGAACAAAAAAAAA................................................................................	20	13	0.08	0.00	0.08	0.00	0.00
................................................................................................AAAAAAGAAAAAAAAAGAGAA...................	21	23	0.04	0.00	0.00	0.04	0.00
...........................................................................................TTTTTAACAAAGAAAAAAAA.........................	20	3	0.33	0.00	0.33	0.00	0.00
................................................................................................AAAGAAGAAAAAAGAAGTGA....................	20	1	1.00	1.00	0.00	0.00	0.00
.......................................AACAAAACAAAAAAAAAAGA.............................................................................	20	30	0.03	0.00	0.03	0.00	0.00
................................................................................................AAATAAAAAAAAAAAAGTGT....................	20	10	0.10	0.10	0.00	0.00	0.00
..........................................AAAACAAAAAAAAAACAA............................................................................	18	26	0.04	0.00	0.04	0.00	0.00

scaffold_181130:4809696-4809807 +

42.46

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGT-----------------------T CAGAAAA--------------------ATTTTTGGGAAGTTTGTTTAAATCTAT----------TTTAAAAAAATTTTTGGATTATTTAGTTATAGAAAAACA------AATTGGAATTTTGTTGTAATTTTTTCTCTATTTTAATT	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
................................................................TTTAAAAAAATATTTGGT.................................................................	18	3	0.67	0.33	0.33	0.00	0.00
....................................................AT----------TATGAAAAAATTTTTG...................................................................	18	1	1.00	0.00	1.00	0.00	0.00
............................................................................................ATAGAAAAACG------AAATGGA...............................	18	3	0.33	0.00	0.33	0.00	0.00
.....................................................................................................................TTTTGGTGTAAGTTTTTCT...........	19	1	1.00	0.00	1.00	0.00	0.00
...........................................TTTAAGTCTGT----------TTTAAAAAAA.........................................................................	21	1	1.00	0.00	1.00	0.00	0.00
....................................................................................................................ATTGTGGTGTAATTTTTT.............	18	1	1.00	0.00	1.00	0.00	0.00
...............................................................................................GAAATACA------TATTGGAATTTT..........................	20	1	1.00	0.00	1.00	0.00	0.00

scaffold_180698:6259223-6259312 +

39.96

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATG-------------CTATATATACATACTTTGCA---GCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT A-------------------------------------ATATATTTAAATGTAAAAAAAAAAATATATTTTTTTTATATATATTAAGTTTACATTTGCTTCTGAAATAAGTTATAAAT-------------AATTTCGTT	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
.......................................................................................................................................TCGGT	18	7	0.43	0.00	0.00	0.00	0.43
........................................ATxTTAAAATGTAAAAAAAAT...............................................................................	20	10	0.20	0.10	0.10	0.00	0.00
.........................................GATTTAACTGTAAAAAAA.................................................................................	18	1	1.00	0.00	1.00	0.00	0.00
......................................ATATATTTAAATGAAAACAAAAA...............................................................................	23	2	0.50	0.00	0.50	0.00	0.00
..........................................ATTTAAGTGTATAAAAAA................................................................................	18	1	1.00	0.00	1.00	0.00	0.00
..........................................ATTTAAGTGTATAAAAAAAAA.............................................................................	21	1	1.00	1.00	0.00	0.00	0.00
..........................................ATTTAAACGGAAAAAAAAA...............................................................................	19	1	1.00	0.00	1.00	0.00	0.00
...........................................TTAACATGTAAAAAAAAAA..............................................................................	19	9	0.11	0.00	0.11	0.00	0.00
..........................................ATTTGAATGTGAAAAAAAA...............................................................................	19	1	1.00	0.00	1.00	0.00	0.00
............................................................................................ATTTGCTTCTxTAATAAGT.............................	18	1	1.00	0.00	1.00	0.00	0.00
..........................................ATTTAAGTGTATAAAAAAA...............................................................................	19	1	1.00	0.00	1.00	0.00	0.00
..........................................ATTTAAGTGTAAAAAAAAAAAAA...........................................................................	23	1	1.00	0.00	1.00	0.00	0.00
.............................................TTGATGTAAAAAAAAAAA.............................................................................	18	10	0.10	0.00	0.10	0.00	0.00
...........................................TTTGAAGGTAAAAAAAAA...............................................................................	18	1	1.00	0.00	1.00	0.00	0.00
..........................................ATACAAATGTAAAAAAAAAA..............................................................................	20	10	0.10	0.00	0.10	0.00	0.00
..........................................ATTTAAGTGTATAAAAAAAA..............................................................................	20	1	1.00	0.00	1.00	0.00	0.00

176

scaffold_181089:9097331-9097422 -

37.38

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT A---------ATTTCCTGCGGTTTATTACGAATCCAAATTGAGTATAAGTCAGAT-AATTATATATGTACATGTATTTTA---------ATAATTT-------------GCATTTTGTGTTGTT	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
.............................................................................TTA---------CTAATTT-------------GTATTTTGTGT....	21	1	1.00	0.00	1.00	0.00	0.00
...........................................................TATATATGTACATGTAATGT.............................................	20	1	1.00	0.00	1.00	0.00	0.00
.........................................................ATTATATATGTATCTGTAT................................................	19	7	0.14	0.00	0.14	0.00	0.00
...............................................AGTCAGAG-AATTATAAAT..........................................................	18	1	1.00	0.00	1.00	0.00	0.00
..........................................................ATATATATGTAGATGTATTT..............................................	20	16	0.06	0.00	0.06	0.00	0.00

134

scaffold_180702:3768609-3768681 -

33.61

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT------------------------------------- AA--------------------------------------------------------------------ATAGTTTGCAACTTTTCAAGTGTTTTGCAATG--------------------TTAATCGAAAATCCAGACTTGGTAGTTCTTAAAATATCT	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
............................................................................................................................................TTGGTAGTTCTTGAAATAGCT	21	1	12.00	7.00	1.00	3.00	1.00
...........................................................................................................................................CTTGGTAGTTCTTGAAATAGC.	21	1	5.00	1.00	2.00	0.00	2.00
.............................................................................................................................................TGGTAGTTCTTGAAATAGCT	20	1	3.00	1.00	1.00	1.00	0.00
............................................................................................................................................TTGGTAGTTCTTGAAATAGC.	20	1	2.00	0.00	2.00	0.00	0.00
..............................................................................................................................................GGTAGTTCTTGAAATAGCT	19	1	2.00	0.00	2.00	0.00	0.00
..........................................................................................................................................ACTTGGTGGTTCTTGAAA.....	18	1	1.00	0.00	1.00	0.00	0.00
.............................................................................................................................................TGGTAGTTCTTGAAATAGC.	19	1	1.00	0.00	1.00	0.00	0.00
............................................................................................................................................TTGGTAGTTCTTCAAATAGCT	21	1	1.00	1.00	0.00	0.00	0.00
.A--------------------------------------------------------------------ATATTTTGCAACTTGTC..........................................................................	18	1	1.00	0.00	1.00	0.00	0.00
...........................................................................................................................................CTTGGTAGTTCTTCAAATAGC.	21	1	1.00	0.00	1.00	0.00	0.00
...........................................................................................................................................CTTGGTGGTTCTTGAAAT....	18	1	1.00	0.00	1.00	0.00	0.00
..............................................................................................................................................GGTAGTTCTTCAAATAGC.	18	1	1.00	0.00	1.00	0.00	0.00
..........................................................................................................................................ACTTGGTGGTTCTTGAAAT....	19	1	1.00	0.00	1.00	0.00	0.00

136

scaffold_180702:4137527-4137597 -

28.45

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCA-AGTGATTTGAAATCACTAAAAGCCTTAAATAT-------TGTT AAATTAT-----------------------------------AGCTAAATATATG------TATGTATACACAT-TCACATTTATCCAGAGCGATCGGACG-------------------CAGTTGTATGTA	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
.....AT-----------------------------------AGCxGAATATATG------TATGTATA...............................................................	22	2	1.00	1.00	0.00	0.00	0.00
.....AT-----------------------------------AGCxGAATATATG------TATGT..................................................................	19	4	0.25	0.00	0.00	0.25	0.00
..........................................AGCxGAATATATG------TATGTATA...............................................................	20	1	1.00	0.00	1.00	0.00	0.00

scaffold_180955:2566660-2566724 +

27.87

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATC-ACTAAAAGCCTTAAATATTGTT ------------------------------------------------------------CTCTAAAAATGCAATTAGCAACAGTAATAGTTAAAGAATATTATCTAAAATGCACATCCATTGCC	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
.........................................................................AATAGCAACAGTAATAGC..................................	18	6	0.17	0.00	0.17	0.00	0.00
...............................................................................................GAATATTAAATAAAATGCA...........	19	2	0.50	0.00	0.50	0.00	0.00

scaffold_180698:6259438-6259508 +

27.74

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT ATA--------------------------------------TATATATATATATATATAGGGATATATATGCAATGTACAGTGTGCTTGAAAAATTAACAAT---------------ATTCGCT	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
..............................................ATATATATATATAGGAGT............................................................	18	29	0.03	0.00	0.03	0.00	0.00
.........................................................................ATGTACAGTGxGCTTGGAA................................	18	1	1.00	0.00	1.00	0.00	0.00
.............................................TATATATATATATACGGATAT..........................................................	21	59	0.02	0.00	0.00	0.00	0.02
..........................................ATATATACAxCTATATAGGGA.............................................................	20	2	0.50	0.50	0.00	0.00	0.00
.........................................TATATATATATATATATAGGGTTGT..........................................................	25	1	1.00	0.00	1.00	0.00	0.00

130

scaffold_180702:658711-658790 -

26.44

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT AAGTAACAAAATT--------------------TAAAAAAGAAAGTAAATGGATAAACTAAAATATAAATATACATA------------------------CATATATATACATATATATTGGA	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
......................................................................ATACATA------------------------CATACATATACGT..........	20	19	0.05	0.00	0.05	0.00	0.00
.........................................................................CATA------------------------CACATACATACATAT........	19	36	0.03	0.00	0.03	0.00	0.00
..........................................................................ACA------------------------CATATACATACATATATAT....	22	32	0.03	0.00	0.03	0.00	0.00
......................................................................ATACATA------------------------AATATATATACA...........	19	140	0.01	0.00	0.01	0.00	0.00
.........................................AAAGTAATTGGACAAACT.................................................................	18	1	1.00	0.00	0.00	0.00	1.00
..................................AAAAAAGAAAGAAAAAGGA.......................................................................	19	5	0.20	0.00	0.00	0.20	0.00
...........................................................................TA------------------------CTTATATATACATATGT......	19	18	0.06	0.00	0.06	0.00	0.00
...........TT--------------------TAAAAAAGAGAGAAAAT..........................................................................	19	2	0.50	0.00	0.50	0.00	0.00
.......................................AGAAAGTAAATGGATAAA...................................................................	18	1	1.00	0.00	1.00	0.00	0.00
.................................................................TAGCTATACATA------------------------CATATAT................	19	19	0.05	0.00	0.05	0.00	0.00
.....................................AAAGAAAGTAAATGGATAAACT.................................................................	22	1	1.00	0.00	1.00	0.00	0.00
............T--------------------TAAAAAAGAGAGAAAAT..........................................................................	18	4	0.25	0.00	0.25	0.00	0.00
................................................................ACACATATACATA------------------------CATATATAT..............	22	32	0.03	0.00	0.03	0.00	0.00
..............................................................ATACACATATACATA------------------------CATAT..................	20	48	0.02	0.00	0.02	0.00	0.00
........................................GAAAGTAATTGGACAAACT.................................................................	19	1	1.00	0.00	0.00	0.00	1.00

scaffold_180700:1226369-1226426 +

24.9

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT -------------------------------------------------------------TGCGTATGTGTATTTGTTGGTTTTTCAAGTGAAAAAAAAGAGAAA-----AAAAAAAACGATT	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
...............................................................................................AATAGGAGAAA-----AAAAAAAA.....	19	7	0.57	0.00	0.43	0.14	0.00
............................................................................................AAAAAAAAGACAAA-----AAAAAAAAA....	23	29	0.10	0.00	0.10	0.00	0.00
...........................................................................................AAAAAAAAAGAGAAA-----AAGA.........	19	37	0.08	0.03	0.05	0.00	0.00
..............................................................................................AAAAGAGAGAAA-----GAAAAAA......	19	10	0.30	0.00	0.20	0.10	0.00

105

scaffold_180698:3124718-3124773 -

22.95

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT AGAAGACACAGTTTA--------------------------------------TGGA------------------------------CAGTTACTTGAAATTCTTGCAAGGCGAACGGGATGAT	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
..............A--------------------------------------TGGA------------------------------CAATTAATTGAAAT.......................	19	1	47.00	0.00	15.00	0.00	32.00
.GCAGACTCAGTTTA--------------------------------------TGGA------------------------------.....................................	18	1	2.00	0.00	0.00	2.00	0.00
............TTA--------------------------------------TGGA------------------------------CAGTTACTTGAAATTCTTGCA................	28	1	2.00	0.00	0.00	0.00	2.00
.....................................................TGGA------------------------------CAATTAATTGAAAT.......................	18	1	2.00	0.00	2.00	0.00	0.00
..............A--------------------------------------TGGA------------------------------CAATTAATTGAAA........................	18	1	1.00	0.00	1.00	0.00	0.00
..................................................................................................AATACATGCAAGGCGAACG.......	19	1	1.00	0.00	0.00	0.00	1.00
..........................................................................................................CAAGGCGAACGGGATGAT	18	1	1.00	0.00	1.00	0.00	0.00

scaffold_180702:2940058-2940082 +

13.11

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
A---------------------------------------------------------------------------------------------------TTGCCACATGCATTCAATTTTGTC

Size

Hit Count

Total Norm

V117
Male body

V118
Embryo

V119
Head

M020
Head

133

scaffold_180702:3766568-3766584 -

9.02

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
AAG-----------------------------------------------------------------------------------------------------------TCTCAACCACTGTG

Size

Hit Count

Total Norm

V117
Male body

V118
Embryo

V119
Head

M020
Head

None

droVir3 - 33 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scaffold_12875:4361310-4361428 +

54.1

AAGCCACAA----AATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT AAACCAGAACGTAAAAGCTTT--ATTGTAAAATGCACTGAAAATGCGGCAAAGCAGATAAA----TATATATTTATATATAGGAACTACTGA--TTATATAAAGGAAGGAATCACGTTAAACAT-ATT	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
.........................................................................................TGA--TTATTTAGAGGAAGG...................	18	1	1.00	1.00	0.00	0.00	0.00	0.00

scaffold_12875:5122055-5122185 +

48.26

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTT-----------GCAGC-TTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
TAAATGTATAAA---TTAAAACTTAAAGATCATT-TATATATACATACATATATATATATATATATATACATAGGTCTGATTTCGCACAAAGCTTTTTCATATGTTGCAATAACAATAATAAG-GCATATAGCAAT

Size

Hit Count

Total Norm

V116
Male body

V053
Unknown

V047
Embryo

M027
Male body

M028
Head

578

scaffold_13049:22439039-22439157 -

46.82

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATA-CTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT CTGTAATAAA--TCCATGACATTTCGAATTGAATGATTATATATATATATATATATATATATAAATATATATATCTGTGCCTCTTTCCACAAAGAAAAAGAGCGAGAAAAAC----AAAGTCAAT	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
..................................................................................CTTTCCACAAAGAGAAAGAGCG.....................	22	1	1.00	1.00	0.00	0.00	0.00	0.00

scaffold_12726:1431731-1431867 +

46.65

AAGCCACAA-----AATTCTCTAGGATTTA------AAAACTCTTGAAAATGTGC---CTAAGTGTATGGAATGCTATAT--------ATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT AGACTGCAGATGTGAATTCCCTAGGATTTACCCAAACGAGCTCTTCATAGTGTGCACTCCAAGTTGACGGCAGTTAATAACCAAAATAAAACGTATTTCTTAGCTATATAACTGCAA--GAATTATA-------ATAAATATATGT	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
.......................................................................................................................GAATTGTA-------CTAAATATAT..	18	2	0.50	0.00	0.00	0.50	0.00	0.00
..................................AACGAGCTCTTCAxAGTATG............................................................................................	19	1	1.00	0.00	1.00	0.00	0.00	0.00

410

scaffold_12928:4741176-4741281 -

46.34

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCT--ATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATC-ACTAAAAGCCTTAAATATTGTT
A-------AAATTCTCTGGTACTTTATATATTTTTGAAATATGCATACATGTTTTGAAATCCCCTTTGATACATAAT--------------GAGATTATAATTATAATAAATTCAATGAGGGTTTCT

Size

Hit Count

Total Norm

V116
Male body

V053
Unknown

V047
Embryo

M027
Male body

M028
Head

403

scaffold_12928:2267073-2267190 -

45.74

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCC-----TAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT AGACTCTTAG-TACAGCAAA--CTTAAAGCTT--------ATGCCAAAAATAAGTATTTTGAAAACTTTTTGCAGCTTAAATGTGCTTTCTAAAAAGCTCAGATATCATAGAAAGTGTTCAGTTTAGTT	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
................................................AATAAGAATTTTGAAACC...............................................................	18	1	1.00	0.00	0.00	0.00	1.00	0.00

254

scaffold_13047:6397103-6397212 +

45.08

AAGCCACAAAATTCTCTAGGATTTAAAAACT------CTTGAAAATGTGCCTAAGTGTA-TGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT AAATGGCAAATTTCGCCAGACAA------CTGCGCAATATTAAAATGTGGCTGCATCTAGTATAATGCCATA-------ATTCGGCTACCCACCCAGACAGTTGCAAT--------GCTTTATCTATCAAA	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
.........................................................TTATATAATGCCATA-------ATT.................................................	18	1	1.00	0.00	0.00	1.00	0.00	0.00

369

scaffold_12875:11007437-11007574 -

44.81

AAGCCACAAAATTC-TCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATAT-ACATACTTTGC-----------AGCTTTTCAAGTG----------------ATTTGAAATCACTAAAAGCCTTAAATATTGTT AAGAAACGAGTTGCGTCTTCGA-----TCGATCTTCAAAATGA---TTAGTTTATGGCTTA---TCAGTATCATAGTTTGAGTTTAATTTGTGTTTGTGCAAGTCAAAATCTTATAAAATAA----TAAAAACTACAACGCTAAAATAAAACT	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
.........GTTGCGTCTTCGA-----TCGATCTTCAAAATG...............................................................................................................	28	1	1.00	1.00	0.00	0.00	0.00	0.00
...........................................................TA---TCAGTATCATAGTTTGAGT......................................................................	21	1	1.00	0.00	0.00	1.00	0.00	0.00
................................................................TCAGTATCATAGTTTGAGTTTA...................................................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
.................................................GTTTATGGCTTA---TCAGTAT..................................................................................	19	1	1.00	0.00	0.00	1.00	0.00	0.00
.........................................................................................TGTGTTTGTGCAAGTCAAAAT...........................................	21	1	1.00	0.00	0.00	1.00	0.00	0.00
...........................................................TA---TCAGTATCATATTTTGAGT......................................................................	21	1	1.00	0.00	0.00	1.00	0.00	0.00

138

scaffold_12928:7405309-7405407 +

41.69

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTG------------AAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT TAAATATTCTT-----------------------GTTCATATATATATATATATATATATGTGTGTG--------TGTATATATAAATATTTGTTTTATCAGAGGGTTGTA------CATGGTATTGTATTGTGTG	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
....................................................ATATAGATGTGTGTG--------CGT..........................................................	18	34	0.03	0.00	0.00	0.03	0.00	0.00
.................................................................................................ATCAGAGGGTTGTA------CATGGTA............	21	1	1.00	1.00	0.00	0.00	0.00	0.00
...............................................TATGTGTATATATGTGTGTG--------T............................................................	21	41	0.02	0.02	0.00	0.00	0.00	0.00
................................................ATATATATATATGTGTGTT--------G............................................................	20	46	0.02	0.02	0.00	0.00	0.00	0.00
..............................................ATATATATATATCTGTGTGTG--------T............................................................	22	27	0.04	0.00	0.00	0.04	0.00	0.00
..............................................ATATACATATGTATGTGTGTG--------.............................................................	21	32	0.03	0.00	0.00	0.00	0.00	0.03
.......................................................TATATGTGTGTG--------TGTATGTTT....................................................	21	40	0.03	0.00	0.00	0.03	0.00	0.00
........................................................................................ATTTGTTTTATCAGAGGGTTG...........................	21	1	1.00	1.00	0.00	0.00	0.00	0.00
..................................................ATATAAATATGTGTGTG--------TGTC.........................................................	21	19	0.05	0.05	0.00	0.00	0.00	0.00
...................................................TGTATATATGTGTGTG--------TG...........................................................	18	45	0.02	0.00	0.02	0.00	0.00	0.00
..........................................ATATATGTATATATAGATGTGTGT......................................................................	24	21	0.05	0.00	0.00	0.05	0.00	0.00
................................................ATATATATATATCTGTGTG--------TGT..........................................................	22	27	0.04	0.00	0.00	0.04	0.00	0.00
..............................................ATAAATGTATATATGTGTGT......................................................................	20	32	0.03	0.03	0.00	0.00	0.00	0.00
....................................................ATGTATATGTGTGTG--------TGT..........................................................	18	45	0.02	0.00	0.00	0.02	0.00	0.00
.......................................................TATATGTGTGTG--------TGTATGT......................................................	19	35	0.03	0.00	0.00	0.03	0.00	0.00
.................................................TATATATGTATGTGTGTG--------CGT..........................................................	21	42	0.02	0.02	0.00	0.00	0.00	0.00
................................................ATATTTATCTATGTGTGTG--------T............................................................	20	31	0.03	0.03	0.00	0.00	0.00	0.00
........................................................ATATGTGTGTG--------TGTATCTGT....................................................	20	30	0.03	0.00	0.00	0.03	0.00	0.00

222

scaffold_12970:7973991-7974094 +

41.6

AAGCCACAAAATTCTCT--------AGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT AAAACCATCAACACTCAAATGATACAAAAACAAACAGTAACAAAAAAAATATATATATATAAAGAATG----------------------------AGAAACTCAAGTTAAATAAACGTAATTTTCATTGCC	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
................................AACAGTAAAAAAAAAAATGT................................................................................	20	1	1.00	0.00	0.00	1.00	0.00	0.00

scaffold_12472:627915-628033 +

40.34

A--AGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATG-------GAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
ACAGGTAGTTGAGCTATATGAAACTTGACAGCCAGGGAATATATGATAAAGCAAATGCAAAAGAAGCGAACATGTTAAAGTCCTTGTTAACTTTGACAGCGGCATGAAA--------------AAATAGAATT

Size

Hit Count

Total Norm

V116
Male body

V053
Unknown

V047
Embryo

M027
Male body

M028
Head

552

scaffold_13049:5826385-5826543 -

38.12

AAGCCACAAAATTCTC-----TAGGATTTAAAAACTCTTGAA--AATG---------------------------TGCC--TAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT GAGCTGCAAAAGTTGCACTAATGAGTTTTAAGAACGCAAACGGCAATAAGTTTTAAACAAAATTTATTTACGTGATAACTAAAAATATATAGAAGTATATATATATATATATAGATAGATTAGAAGGGAAATGAAAACGCGACAAACAAGAAATTTTGT-	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
.....................................................................................................TATATATATATAGATCGATTG......................................	21	7	0.29	0.29	0.00	0.00	0.00	0.00
................................................................................TAAAATATAAAGAAGTAT..............................................................	18	1	1.00	0.00	0.00	1.00	0.00	0.00
........................................................................................ATAGTAGTATATATGTAT......................................................	18	6	0.17	0.00	0.00	0.17	0.00	0.00

scaffold_12822:2882266-2882414 +

38.07

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGT-------------------------GATTT-----GAAATCACT---AAAAGCCTTAAATATTGTT AGGCATAAATAATTTGGAAGCTCAAAGAAGCC---AAGATTTACCTAGATGGGTT-----CTAGAACCTGTTGCTAAGCTAGTTAACAAGTTAGCTTCTTAATGAAGATATTAAGTGATGCGTATAAAAGATAGTGGGGCCAACTTTAAGGTTTCAT	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
....ATAAAAAATTCGGAAGCT.......................................................................................................................................	18	1	1.00	0.00	0.00	1.00	0.00	0.00
.....................................................................................................................ATGTGTATAAAAxATAGTG.....................	18	1	1.00	0.00	1.00	0.00	0.00	0.00

270

scaffold_13049:1469918-1470024 +

37.33

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAAT----ATTGTT GGCAAACT-AGTTTTTCGGTATCCGAGCATCCGTTGGC------TCA---------------GGTTGTAGTTGGCTTTCAGGCATTTTTCTGAATGGAGCTCACTAAAAATTGTGAACTGGAATTTTT	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
......................................................................................................ATTAAAAATTGTGAACGGG.......	19	1	1.00	1.00	0.00	0.00	0.00	0.00
................................GTTGGC------TCA---------------GGTTCTGGT.........................................................	18	1	1.00	0.00	0.00	1.00	0.00	0.00
........................................................................................................TAAAAATTGTGAACGGGCA.....	19	1	1.00	0.00	0.00	0.00	0.00	1.00
....AACT-AGTTTTCCGGTAACCGA......................................................................................................	21	1	1.00	0.00	0.00	1.00	0.00	0.00

257

scaffold_13047:11485532-11485688 +

36.91

AAGCCACAAAATTCTCTAGGATTTAAAAACTCT-TG--AAAATGTGCCTAAGTGTATGGA-ATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTT--------------------------------GAAA--TCACTAAAAGCCTTAAATATTGTT AGGACAGATCATTCGACTGTATTTAATAGGTGTGTGCAAAAAT-----TAAATATATGCATATTTTTTATACATATACTTTGGAATTTGTCTAAGGTATCACCTAGTCGTGCACTCTCGCGTGGCCATGCCAAAAACCCCCTTCAAAGTTTTAACTTGTCTT	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
..GACAGATCTTTCAACTGT..............................................................................................................................................	18	1	1.00	0.00	0.00	1.00	0.00	0.00

scaffold_12723:3118981-3119069 +

35.75

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTT-----TTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT AA------------------------AAACGCATACATACACACGTACATATATTGAACATTTTAAGCA--TATTGTATATTTTTTTTTGTCAAACCAAGAAAAGAAACGGAAAA--------------	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
...........................................................GTTTTAAGCA--TATGGTAT..................................................	18	1	2.00	0.00	0.00	2.00	0.00	0.00
...........................................................GTTTTAAGCA--TATGGTATATT...............................................	21	1	1.00	0.00	0.00	1.00	0.00	0.00

525

scaffold_13047:9489958-9490047 -

35.74

AAGC-CACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT AGCTGCTCAAAACTTTCTTAAA--------------------------------CTGTTTGCATTACGAATTTATTTTACTGATTTCTACGCACTCCTTACA---CAAATTCAATGTATATGGAT	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
...........................................................................................................AACTCAATTTATATGGAT	18	1	1.00	0.00	0.00	0.00	0.00	1.00

191

scaffold_12963:15785664-15785757 +

34.43

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT AG-------AATAGCTCAGAATT---------CCAAGAAAGTAGCTGGGT----GGAACAAAAGACAAACACAGGTTCTAGATATTCTATCGAATTTA-----------TTTATTAGTATTATT	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
................................................................................................TA-----------TGTATTAGTATTATT	18	3	0.33	0.00	0.00	0.33	0.00	0.00
............................................................................................AATTTA-----------TTTATTTGTAAT...	18	6	0.17	0.00	0.00	0.17	0.00	0.00

511

scaffold_13047:4136737-4136835 -

34.03

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
AGC----AAATTTATGTGACATTTCCATAAGCTATAGAAAGGCCCTCACTACTCGAG----------------TTTTGTTATTTTAAAATTTAGTTTAATTGTTTA-----GCGAAATGTCCCT

Size

Hit Count

Total Norm

V116
Male body

V053
Unknown

V047
Embryo

M027
Male body

M028
Head

243

scaffold_13042:3446281-3446343 +

30.25

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT GAGCCAGAAGATGAGCTAAGGGTTAAGAA------AAAACAGGGTGACAAATATAGAATA-TATATATAC------------------------------------------------------	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
.....AGAAGAAGATCTAAGGGT.....................................................................................................	18	1	3.00	0.00	0.00	0.00	3.00	0.00

173

scaffold_12963:4117376-4117448 +

28.69

AAGCCACAAAAT-TCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAG--TGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT TGTATATGCATTTTCCGTTGCATTTAATA----TCATAATTGTGCACAGAAATGTT----TTTCTTTAT----TTTCTTTACA------------------------------------------TT	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
......................................................TT----TTTCTTTAC----TTGCTTTACA------------------------------------------..	21	1	1.00	0.00	1.00	0.00	0.00	0.00
........................................TGTGCATAGAAGTGTT----TTT................................................................	19	1	1.00	0.00	0.00	1.00	0.00	0.00
...................................ATAATTGTGAACAAAAATG.........................................................................	19	1	1.00	0.00	1.00	0.00	0.00	0.00

droMoj3 - 50 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

547

scaffold_6496:24941044-24941173 -

52.44

AA-----GCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTT-----TGCAGCTTTTCAAGTGATTTGAAAT---CACTAAAAGCCTTAAATATTGTT
AATGATGGTCACTTGATTTTCAAGCTGAT--TTATGCATCAAAATTATTCAAAGAGTAG-GCACGCGATATATACATACATATATATGCATATATATACGTGTGTATATATAGACAT----AACTTTAGATTTTTAG

Size

Hit Count

Total Norm

V110
Male body

V056
Unknown

V049
Head

V041
Embryo

220

scaffold_6500:14708003-14708128 +

52.3

AAGCCACAAAATTCTCTAGGATTTAAAAAC-TCTTGAAAATGTGCC------------TAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT A--CAAAAAAATTACGTAAATGTTAAAATTAAATGCAAAATATCTGAGATTGAGATTGTTGATGAACGGA-AGCTGTATATAC------TATAACTTATAAACTTA--TCATATAACTATAACATTTAATTATTTCT	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
........................................................TGTTGATGAACGGA-AGCTGTATA.........................................................	23	1	1.00	1.00	0.00	0.00	0.00
....................................................AGATTGTTGATGAACGGA-AGCTGTAT..........................................................	26	1	1.00	1.00	0.00	0.00	0.00
......................................................ATTGTTGACGxACGGA-AGCTGT............................................................	21	1	1.00	1.00	0.00	0.00	0.00

367

scaffold_6680:15605336-15605456 +

51.09

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCA----CTAAAAGCCTTAAATATTGTT
AATCTATACCATATAC---CATTTAAAATTTATATAA----TTCTTTTTTGAAAGTCACTTGAAATTTACATTTTTATTAGATTTTTTCTTGTTTAAAATTTCATATCATAAAATTATACATTTTTAA

Size

Hit Count

Total Norm

V110
Male body

V056
Unknown

V049
Head

V041
Embryo

558

scaffold_6498:1318667-1318793 -

50.18

AAGCCACAAAATTCTCTA-GGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATA---------TATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
GTAGTTTATTTTTGTTTTCAGTTTTAATCAGGATTAAACGTG-------ACGTGTCGAATGCGACATTTTTTTCATTTAAATATTGTGTTACTTTTTATGTAATTTTACATGAATAAAAGCCTTAGAAATGATT

Size

Hit Count

Total Norm

V110
Male body

V056
Unknown

V049
Head

V041
Embryo

515

scaffold_6496:9895190-9895311 -

48.8

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACT-TTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
TAATTATATTATTATATTCAATCTTTATAATAT--ATAGTATATATAAATATAGAAAATATAAGAATTAATTACGAATGCAAATTCTTCTACAATGTGTA-TTATTAATTACCATAATTAGTAAT

Size

Hit Count

Total Norm

V110
Male body

V056
Unknown

V049
Head

V041
Embryo

329

scaffold_6680:1711439-1711556 +

47.97

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAA-----TGCTATATATACATACTTTGCAG---CTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT AAA--------TGTAATAAGATTTAGTTAT-TTAGAAAGTATGCCAAAAAGATAAAAGCCCAGCATCAGATGCACTCACTCCATTCCTGTTTTTTATA---TTTATAT--ATATAGATCAGAGAGTACTCTC	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
................................................................................................TA---TTTATAT--ATAGATATCAGA..........	21	5	0.20	0.20	0.00	0.00	0.00

471

scaffold_6473:11063367-11063477 -

46.68

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT----- ------------------GGTGTTTGAAATCATAGCAAATGCATCTACATAAGCATATGTATCTATATACACACCCTACATATGATTATGAGACGACATATTATACACATTCATACATATATACATACA	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
.................................................................................ATGATTATGCTACGAC................................	16	1	1.00	0.00	1.00	0.00	0.00

319

scaffold_6654:590020-590148 +

46.62

AAGCCACAAAATTCTCTAGGATTT-AAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTT-TT--CAAGTG------ATTTGAAATCACTAAA-AGCCTTAAATAT----TGTT AAG--------TTCTCTATGGGGCAAAAGATTCA-ATGTGTGTGTGTATGTATATGT-ATATTTTGTGTGTGTATTTTTTTTTTATATCATAAGTATATTTATTATAAAATCTCTAAACAGCCATAAAAGTCAAAAGTT	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
...................................ATGTGTGTATGTATGTAC......................................................................................	18	34	0.03	0.00	0.00	0.00	0.03
...................................GTGTGTGTGTGTATGTATGTGT-A................................................................................	23	19	0.05	0.05	0.00	0.00	0.00
...................................ATGTGTGTATGTATGTATATG...................................................................................	21	16	0.06	0.00	0.06	0.00	0.00
.......................................GTGTGTGTATGTATATGT-.................................................................................	18	13	0.08	0.00	0.00	0.08	0.00
................................................TGTCTATGT-ATATTTTGGGTGTG...................................................................	23	1	1.00	1.00	0.00	0.00	0.00
................................................................TGTGTGCGTGTTTTTTTTTTA......................................................	21	3	0.33	0.00	0.33	0.00	0.00
.............................................................TTGTGCGTGTGxATTTTTTT..........................................................	19	1	1.00	0.00	0.00	1.00	0.00
.......................................GTATGTGTATGTATATGT-GTAT.............................................................................	22	8	0.13	0.13	0.00	0.00	0.00
..............................................................TTTGTGTGTGTTTTTTTTTTTTC......................................................	23	3	0.33	0.00	0.00	0.00	0.33
................................................................TGTGTGTGGAGTTTTTTT.........................................................	18	1	1.00	0.00	0.00	0.00	1.00
.....................................GTATGTGTGTATGTGTATGT-A................................................................................	21	12	0.08	0.08	0.00	0.00	0.00
....................................CGTGTGTGTGTATGTATC.....................................................................................	18	11	0.09	0.00	0.00	0.09	0.00
......................................TGTGTGTGTATATGTATGT-A................................................................................	20	39	0.03	0.00	0.00	0.00	0.03
.......................................GTGTGTGTATGTGTCTGT-A................................................................................	19	36	0.03	0.03	0.00	0.00	0.00
.......................................GTGTTTGTATGTATGTGT-AT...............................................................................	20	7	0.14	0.00	0.00	0.14	0.00
....................................TGTGTGTATGTATGTATGTGT-.................................................................................	21	31	0.03	0.03	0.00	0.00	0.00
......................................TGTGTGTTTATGTGTATGT-A................................................................................	20	9	0.11	0.11	0.00	0.00	0.00
......................................TGTGTGTGTATGTGTATGT-ATTTT............................................................................	24	1	1.00	1.00	0.00	0.00	0.00

198

scaffold_6500:2767012-2767144 +

46.21

AAGCCACAAAATTCTCTAGGATTTAAAAACTCT---TGAAAA----TGTGCCTAAG--TGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
CTGATCTATAGTTGGTTAGAGAAATAAAAATAATCTTAACAAATTTAGTGCATAAATTTGCCGTGAATCAAATTTGTATATTATTATCATATAGATAAGTCATGTCAGATTATTATATTTTATATATAATATC

Size

Hit Count

Total Norm

V110
Male body

V056
Unknown

V049
Head

V041
Embryo

520

scaffold_6496:11003529-11003658 -

45.54

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTT----GCAGCTTTTCAAGT--------GATTTGAAATCACTAAAAGCCTTAAATATTGTT
AACGCAGCCAACTTAATAAGGCAGTTAAGCTAATTAAGTGTTGCCAGACTGT------TATTATATTTAAACAATTTCAATTGAGCTCTTCGCATATAAAATACAAAATAAATTTAATGAAGTTATAAATATAGCT

Size

Hit Count

Total Norm

V110
Male body

V056
Unknown

V049
Head

V041
Embryo

186

scaffold_6498:1394026-1394153 +

44.43

AAGCCACAAAA------TTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAA--TGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAAT-CACTAAAAGCCTTAAATATTGTT AAACAATAAGAAATTAATTATTCAGAAATTAAGGCC---AGGAGGCATATTTTTCG--ATTAAGCTCTATATTTTTGAGTAATCCTCGTTTTCATGTATGACATATAACCTATTTATCGGATAGGATTTTGTT	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
..............................................ATATATTTCG--ATTAAGGT...................................................................	18	1	2.00	0.00	1.00	1.00	0.00

573

scaffold_6500:4072901-4073007 -

44.2

AAGCCACAAAATT---CTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGC----------AGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
AAAATAAAAAGTTAATTTTTAAATTTTAAA---T-TTTAAATTGGGTATATAC----------------------ATTTTATTAACATAAATAGAT-GTCTAGCTATCTAAAATTAAT---TATTTTAATTATATTT

Size

Hit Count

Total Norm

V110
Male body

V056
Unknown

V049
Head

V041
Embryo

559

scaffold_6500:772391-772523 -

44.19

AAGC---CACAAAATTCTC-TAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTA--------AATATTGTT- AAATTGATACGAAATTCTTCTAGGAA-AGC-GAATTTTATATACGCATTTAGAGTTTAGGAACG--ACGTTGAAGAGCTCTGCCTCCTTCCACTTGGTTTGCATTCATAAAGGGTTTTCTGGGTTTGGATGATGCAG	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
.............................................................................................TTGATTTGCATTCAAAAAG.........................	19	1	1.00	1.00	0.00	0.00	0.00
...........................................................................................................TAAAGGGTTTTGTGAGTTT...........	19	1	1.00	1.00	0.00	0.00	0.00

332

scaffold_6680:2063001-2063095 +

43.26

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATG---------TGCCTAAGTGTATGGAATGC-TATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
AAA--------------------------CTCTGGTAAATGATGTACAAGTCTTTATATATATTATATATATATATATACATATTCAGCAACTTTTCACTTAATTAGAATTTGT-------------TCTTGTT

Size

Hit Count

Total Norm

V110
Male body

V056
Unknown

V049
Head

V041
Embryo

256

scaffold_6540:3718398-3718503 +

42.74

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT CAACAACAAAAATATGAAAACATTA--AACTCTTAATAACATACTTA-GTATATTATGTGGC----ATGTTTATTGTATAATAATCATAATAA-----------TATAAATTTAAATTATTACG	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
..................................................................ATGTTTATTGTGTTATAAT.......................................	19	1	1.00	0.00	0.00	1.00	0.00
........................................ATACTTA-GTATATTATGTGGC----ATGTTT....................................................	27	1	1.00	1.00	0.00	0.00	0.00

647

scaffold_6540:30314094-30314197 -

42.62

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGC------TATATATACATACTTT---GCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT GCACCAGGAAATTG------GTTCAATTGCTTGTCAAAGTCTACATAAATTTAACATATATTCATATTATGTATACATATATATATAT-----------------------ATATATATAGATAAATATTCAT	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
.......GAAGTTG------GTTCAATTGGT......................................................................................................	18	1	1.00	1.00	0.00	0.00	0.00
......................................................................................................................TAAATAAATATTCAT	18	4	0.25	0.00	0.00	0.25	0.00

133

scaffold_6473:14338596-14338702 +

42.56

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTA-----TGGAATGCTATATATACATACT---------TTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
GATATAC------------GATAGATAGGCGATAGAAAATGAGATGAG---TAAGAGCTGGATAGATATTAAAACATAACATATATAAAT--------TATAACATTTTGGAAATCATTAAAAT----GAAT----AT

Size

Hit Count

Total Norm

V110
Male body

V056
Unknown

V049
Head

V041
Embryo

159

scaffold_6496:13353479-13353619 +

42.04

AAGCCACAAA---------------------------ATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCT------------TAAATATTGTT
AAATTTTATATTCCAAATTCCGCATATTTAAAATACATTTTTTTATTTTATAAAATCTTTTGGATGTTTTTAGAAAAATTTTAAATATTG----------------------GAAAAATATTTAAAATTTTTAAAAAATTTCTCTTGTAATTAAAATATAATT

Size

Hit Count

Total Norm

V110
Male body

V056
Unknown

V049
Head

V041
Embryo

492

scaffold_6482:929738-929867 -

41.87

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGC------TTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT GCGCTTCTTTAGCTCCTCGGAGCTAAACCATCATCAGATTGCGCACACGCGGCTGCGTCCATTTCGATGCTCGCTGTGCGGCTCGTGCTTTCTGCGCAAATCGAATTACAAGCAACATTTGAAGATTCAC	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
..........................................................................................TCTGxGCAATTCGAATTACAA...................	20	1	1.00	0.00	1.00	0.00	0.00
.............................................................................................................ACGCAAxATTTGAAGATTC..	18	1	1.00	0.00	0.00	1.00	0.00

scaffold_6328:2345003-2345094 +

41.4

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAA-GCCTTAAATATTGTT TATACACACAC-------------------------ACATATGTATATATGTATATGTAGCTATATATATAT-----GTATATATATATGCATATCTATATATCTATATAACTTTATATA---TT	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
.......................................TATGTATGTATGTATATGTAGT................................................................	22	3	0.33	0.33	0.00	0.00	0.00
.........................................TATATGTAxGTATATGTAGCTA..............................................................	21	2	0.50	0.50	0.00	0.00	0.00
.......................................TATGTATATAGGTATATGTA..................................................................	20	31	0.03	0.03	0.00	0.00	0.00

516

scaffold_6496:10249123-10249236 -

39.94

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACA------TACTTTGCAGCTTTTCAAGTGATTTGA--A-----ATCACTAAAAGCCTTAAATATTGTT
ATCTCAACTAA---TTGAGAAGCTGGGAAT--------------------ATTGCAAACACTTCCCACATATTCAATGAATCTCTGGTTTCCCAAATGGTCCATTAAATCCCACATCCACAAACTCCAAATAATAGT

Size

Hit Count

Total Norm

V110
Male body

V056
Unknown

V049
Head

V041
Embryo

droGri2 - 38 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

270

scaffold_14822:484637-484751 -

47.5

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAG--CTTTT--CAAG--TG-ATTTGAAATCACTAAAAGCCTTAAATATTGTT
GGACGGAAGTGCTTCCT----TCTATATACTCTTTAAT-AGCGCGTAGCTGTGAAAAG---TAAG--CATGTATTTTGTGGTGATTTTTGCAAGGATATTTCTCAAATCAATGAA----TTAA--TTTGCT

Size

Hit Count

Total Norm

V109
Male body

405

scaffold_15110:6008831-6008949 -

47.2

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAA-----------------TGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
AAACTACAGACTGCTCTCGAAAAGTTTAACTCTTTGCTTTTAGAATTTCTAATCTATT-------------TTTCTGTTTGCTCTAATTTTGTTGCAGTATTTCAAATTAATTGAAA---------ACATTGGCTTTTGTT

Size

Hit Count

Total Norm

V109
Male body

195

scaffold_15245:2625755-2625884 +

46.92

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGA----------------ATGCTATATATACATACTTTGCAGCTT--TTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT-----
AAAACAAAAATGTATCTAAAAA-----------------TATTTCATAGTATTTGTAAACAAAAATTAAAGTAGCCTAAAACTTAAATTTTGTGAAGTCTGCTTAAGCTGAATTGGAATCTTTTTTAGTTAAAAATAATGATAATGA

Size

Hit Count

Total Norm

V109
Male body

526

scaffold_15252:3944358-3944483 -

45.04

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATA--TATACATACTTTGCAGCTTTTCAAGTGATT-T---GAAATCACTAAAAGCCTTAAATATTGTT
ATGCTATTGT--TGTTGTTGCTTCCTATCCTCATATGTATGTACATACATATATATATATATATATATATATATATATTTCCGTAT-ACATATATGTCTGCATAATTTTCGTTTAGCTTTTTGTATTGT-

Size

Hit Count

Total Norm

V109
Male body

scaffold_14853:5600478-5600604 +

45.03

A--AGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGC----------TATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
ATGAATTATTGAATACGCTAGCAGCAATATATATATATATATATACATAATCACATACATTATTCATATATTCTATTTATATATATTCTATATAT-TTATGCTTACTTCATTGTGTGATTAACTTGA--------T

Size

Hit Count

Total Norm

V109
Male body

135

scaffold_15110:16270668-16270806 +

43.57

AAGC--CACAAAATTCTCTAGGATTTA--AAAACTCTTGAAAATGTGCCTAAGTGTATGG------------AATGCTATATATAC---ATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
CAGCATCATGAGGTTGTCCAGGAGGTTTATCTA-CAGTAGAAGTGTGTT-ATATTTACAATCGATTCATATTATCTCTATATATACAAAATAGTTGTTAGTTCTCCATAAGTTTTAGAGTTGCCAACAAATTGAG--CTTGTG

Size

Hit Count

Total Norm

V109
Male body

307

scaffold_14853:4230593-4230723 -

43.55

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAA----------------------------------------GTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
AATATG--AAATTTCAAATTAAATAAAACATA---------------------TAGGATATAATA-ATATAAATTGGGGAGTATTCA-AATGTAAAAAGGTCTCAAATTTATTGCGATGTTTGGGAAAAGCGA--------GACAAAAATAATAAACAAAAGTT

Size

Hit Count

Total Norm

V109
Male body

490

scaffold_15245:852701-852804 -

43.38

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT T----------------AAGATTGAAAGATAGATGTGAATGCGATTAAAAATATGAATAGTGAGTAGTGAATAGTGAATAGAAG--TGAGTAGTGAATAATGAGTGAATGCTTTTAAAAG--GA	Size	Hit Count	Total Norm	V109 Male body
..........................................GATTAAATATATGGATAGT...............................................................	19	1	2.00	2.00

148

scaffold_15112:4078759-4078867 +

42.62

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATG-GAATGCTATATAT-----ACATACTTTGCAGCTTTTC-------------AAGTGATTTGAAATCACTAA-----------AAGCCTTAAATATTGTT
AATGTA---------------------------------------------TATATATATACTATATATATAATATATAATTTGCGGTTTTCTTTTTTTGTAAACAAATTTGTTTCGTATCATTAATTACAAACTACAATTCGCGTATTTTATT

Size

Hit Count

Total Norm

V109
Male body

235

scaffold_15252:11682948-11683087 +

42.34

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGA----ATGCTATATA--TACATACTTTGCAGCTTTTCAAG-----TGATTTGAAATCACTAAAAGCCTT-------AAATATTGTT
AACG--TAGCATTCCAATAAAGTAAGAATCTCTCGATAAATTGAGTAAATGTTTTGATAAGATAATAGATAATAGAATCATTTGCAATTCCTCAACGGAAGTTGCTTCCGATAACAAAGACTTTCAGCAGAAATATATTCCA

Size

Hit Count

Total Norm

V109
Male body

323

scaffold_14853:7262610-7262741 -

41.08

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATG-----------TGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
AATTTGGTATATTGACTCACATATGGGAATGCTATGATAGAAATTGTGATACTAAATAATTGGGCAAATCAAGCTGAATACACACTCCGTAAACCTTAAGA---GGTAGAGTCACCAAATTTGTTGTGTACCATT

Size

Hit Count

Total Norm

V109
Male body

186

scaffold_15203:9594261-9594381 +

40.67

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGC------------------------------CTTAA------ATATTGTT--------------- AAGCACAAAAAAAAACAAACAAACAAACAAACA--AAAATATTA--------------TTTTAT--------------------------------------ACAAACAGAAATGTGTTTTTTTTTTGTTTCATTTGAATTTTTAATTTTTAATTTTGTTTTTTTTTTATTTTGG	Size	Hit Count	Total Norm	V109 Male body
..............ACAAACAAACAAACAGACG--AA..........................................................................................................................................	21	2	0.50	0.50

262

scaffold_8306:573-701 -

40.46

A--------------AGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACT---------TTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
GCAAGTGTATGTAGTGGGCAGAAGGCATTTTACCAC-------------GGACACCCATTAGGTGTATGCAGTCAGACATATATATATATATATATATATATATGTTTCTTCTTGATCAGAGAAGGCCGAGGCCCC------TCGTT

Size

Hit Count

Total Norm

V109
Male body

180

scaffold_15203:6841947-6842044 +

39.78

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
TTTTGACAACGTTTG--------------------TA-CTTGACTTG--AGTAGTAAATTCTCATTGTGCTTTTTTTCTGAGTGTACAAATGAGTTAAGAAAAGTGT--TGCTT-AAGTTTGCA

Size

Hit Count

Total Norm

V109
Male body

234

scaffold_15252:11113465-11113561 +

39.75

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGA-ATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
AAGTCTT--------CCA--TTTGCAGAAAGATAGAAAAAGCACTTAAAGTTATTAAAATA--ATATATGAATAA-------TTAATCAAGCAATTTAG--TC-------AATTTAAATGAGTTT

Size

Hit Count

Total Norm

V109
Male body

445

scaffold_15110:22456483-22456588 -

39.62

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATA-TATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATTGTT
TAAATATGGATATAGTCAGGACTTAAGTCTGCTTCAA-----------C--TATAACAAGCCATACTATTTTTGAACTGCAGCTGTTCGGA---CTTG---TTTTGTTTGGCTTGAAGCATTATT

Size

Hit Count

Total Norm

V109
Male body

scaffold_14830:3074007-3074157 +

39.33

AAGCCACAAAATTCTCTAGGATTTAAAAA------CTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATT---------------------TGAAATCACTAAAAGCCTT-A--AATATTGTT
ACGCTCCATAACTA-ATATCATTTAAAAAGAAGATAATTTGAAGATTTGAATAATTTTTCTTATACTTACTCTTATACGCTCTTTAACTCTTTACTCAACAATAAATGAATTTTGTAAAATATGAAACTGCA--TAGCCTTTAAAAGACTTGAT

Size

Hit Count

Total Norm

V109
Male body

193

scaffold_15245:1394084-1394229 +

38.74

AAGCCACAAAATTCTCTAGGATTTAAAAACTC--TTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTT----------------------GCAGCTTTTCAAGTGAT---TTGAAATCACTAAAAGCCTTAAATATTGTT
AA----CTGAGCTCCATGGCATGGGGAAAATAATTCAAAATTAAGCAAAAATCTCTCGAATAATATTTAAACTATTTTTGGCGATTTATTTGTTTAAAGCAACTGCTTTTCAAATAATAAATTGATGTTGCATGTT-TCTCCATTATTGAT

Size

Hit Count

Total Norm

V109
Male body

scaffold_14624:964663-964771 +

38.49

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTAAGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAAAAGCCTTAAATATT---------------GTT AATTCAT----TGTTCTAAAAGATAGAAAGTCTTGAACAATTAGAAAAATTAA---AAT------TGAGTACACTTTGC--------GCAATAT---------CTAAAATTCCAAAAGTGTGGTGTTTTTTTGGCTCTT	Size	Hit Count	Total Norm	V109 Male body
...............................................AATTGA---AAx------TGAGTACACTTT..............................................................	20	1	11.00	11.00
...............................................AATTAG---AAx------TGAGTACACTTT..............................................................	20	1	3.00	3.00
...............................................AATTGA---AAx------TGAGTACACTT...............................................................	19	1	1.00	1.00

200

scaffold_15245:5333893-5333975 +

37.38

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTA-AGTGTATGGAATGCTATATATACATACTTTGCAGCTTTTCAAGTGATTTGAAATCACTAA-AAGCCTTAAATATTGTT
AG-----------------------------------AATGTATATAGAATATATAGAAT---ATATATATACACCTTACGGTGCTCGATACGTCTC-----CTTTAATGCGCTTTAAATCTGGGC

Size

Hit Count

Total Norm

V109
Male body

413

scaffold_15110:10554479-10554627 -

37.17

AAGCCACAAAATTCTCTAGGATTTAAAAACTCTTGAAAATGTGCCTA-------------------AGTGTATGGA-ATGCTATAT-ATACATACTTTGCAGCTTTTCAAGTGATTTGA------------------AATCACTAAAAGCCTTAAATATTGTT
ATGCCAAGGGA--------------CAAATTTTGGAAAATTTGCATTTTTTATTTAATCTCAACTGTGGAGATGAACTTGCCACACAATTCGTGCTAGGATTCGTTTTAGGTGTAGCTAGTTTGGTTAACTCCCACTGGTCACCAAGATACTTCAATTTAATG

Size

Hit Count

Total Norm

V109
Male body

Generated: 04/20/2012 at 05:41:32 EDT