Conservation for mir-55


Color Code:    mir sequence   mir* sequence   predicted mir*   mutation

mir-55   chrX:13144727-13144864    View MI0000026 at mirBase   

Species Fold Score
ce4 GCUUAU-----------------------------------------------------------------------------------UGCGAAGCAUGU-----------------------CUAGAUUUGGAACUUAA-----UGGGACUCGGCAGAAACCUAUCGGUUAUACUUUUUGG--AUAUGCUAUACCCGUAUAAGUUUCUGCUGAGCCCCUUAUUCCUGUUUGGCGCUUCAAGCUAU---CUA
cb3 GCUGAUCUUUGACUCGAACCUGGACAUCGUUUUGUACACGAAGUCAAGCUGCUGUACCCGUGAUUCCAUGUAUCGAGUCAACGAUCGCCUUUAAAA-AUGUGCUUCUUUCUGAUCUAGUCCGCGCCAAAAUUGAAUCGUCACAAAGGGGGACUCGGCGGAAAAUAUGGUGGUAUACUACACAGUGAAUAGAUAUACCCGUAUAUUUUUCUGCCGAGCCCC=================================
caeRem2 --UGAU-----------------------------------------------------------------------------------UGUGAAA-GAGU-----------------------CCAGACUCGGAAAGUCGCA---UGGGACUCGGCAGAAGCACUUGGGGUAUACUUCACAG--AGUAACUAUACCCGUAUUUGUUUCUGCUGAGCCCCUGACACCAGUUCGGUACUUCUUAUCAUGAUCUG
caePb1 --GUAU-----------------------------------------------------------------------------------UCCAAGA-AUUG-----------------------CCAGGUUUGG-UAGUCGC----UGGGACUAGGCGGAAGUAUAGAGGGUAUACUUCAUCA--AGUAACUAUACCCGUAUAUAUUUCUGCUUAGCCCCUGACACCAUCUUGGCCUUUCUUGCUAU---CUA
priPac1 =============================================================================================================================================================================================================================================================

mir-55   chrX:13144727-13144864    View MI0000026 at mirBase   

Species Fold Score
ce4 GCUUAU-----------------------------------------------------------------------------------UGCGAAGCAUGU-----------------------CUAGAUUUGGAACUUAA-----UGGGACUCGGCAGAAACCUAUCGGUUAUACUUUUUGG--AUAUGCUAUACCCGUAUAAGUUUCUGCUGAGCCCCUUAUUCCUGUUUGGCGCUUCAAGCUAU---CUA
cb3 GCUGAUCUUUGACUCGAACCUGGACAUCGUUUUGUACACGAAGUCAAGCUGCUGUACCCGUGAUUCCAUGUAUCGAGUCAACGAUCGCCUUUAAAA-AUGUGCUUCUUUCUGAUCUAGUCCGCGCCAAAAUUGAAUCGUCACAAAGGGGGACUCGGCGGAAAAUAUGGUGGUAUACUACACAGUGAAUAGAUAUACCCGUAUAUUUUUCUGCCGAGCCCC=================================
caeRem2 --UGAU-----------------------------------------------------------------------------------UGUGAAA-GAGU-----------------------CCAGACUCGGAAAGUCGCA---UGGGACUCGGCAGAAGCACUUGGGGUAUACUUCACAG--AGUAACUAUACCCGUAUUUGUUUCUGCUGAGCCCCUGACACCAGUUCGGUACUUCUUAUCAUGAUCUG
caePb1 --GUAU-----------------------------------------------------------------------------------UCCAAGA-AUUG-----------------------CCAGGUUUGG-UAGUCGC----UGGGACUAGGCGGAAGUAUAGAGGGUAUACUUCAUCA--AGUAACUAUACCCGUAUAUAUUUCUGCUUAGCCCCUGACACCAUCUUGGCCUUUCUUGCUAU---CUA