Sequence alignments and conservation for all raw sequences. n = 135 (showing only valid orthologous sequences)


Color Code:    mir sequence   mir* sequence   predicted mir*   mutation

let-7   chrX:14744072-14744210    View MI0000001 at mirBase   

Species Fold Score
ce4 CAGGCGA-UUGGUGGACGGUCUACACU-GUGGAUCCGGUGAGGUAGUAGGUUGUAUAGUUUGGAAUAUUACC----------ACCGGUGAA-CUAUGCAAUUU-UCUACCUUACCGGA-GACAGAA-CUCUUCGAAGCUGCGUCGU----CUUGCUCU
cb3 --UGCAGGAUGAUGGC---UCUACACU-GGG-GUACGGUGAGGUAGUAGGUUGUAUAGUUUAGAAUAUUACU----------CUCGGUGAA-CUAUGCAAGUU-UCUACCUCACCGAA-UACCAGG--U--UCUCAACUGCAUCGUGUCAAUUACUCU
caeRem2 --GGCAG-AUGGCGGCCGGUCAACACU-GUGCGUCUGGUGAGGUAGUAGGUUGUAUAGUUUAGAAUCUUAC-----------CUUGGUGAA-CUAUGCAAGUU-UCUACCUCACCAGA-UACAGAA--UCUUCUCAGCUGCAUCGU----CUUGCUCU
caePb1 --GGCGA-AGGAUGGCCGGUCAACCCUCGCG-GUCCGUUGAGGUAGUAGGUUGUAUAGUUUAGAAUCAUAU-----------CCCGGUGAA-CUAUGCAAGCU-UCUACCUCACCGGAAUAUCAGGAUUCUUCUCAGCUGCUUCGU----CUUGCUCU
priPac1 ==================================CUGCUGAGGUAGUAGGUUGUAUAGUUCGGAAUAAUACCAACUGUAUCAAUUGGUGAAACUGUACAACCUGUCUAGCUUGCCAG=========================================

lin-4   chrII:5902198-5902331    View MI0000002 at mirBase   

Species Fold Score
ce4 UUGGUUGGUUU-AUGAGU---UUAUGCUUCCGGCCUGUUCCCUGAGACCUCAAGUGUGAGUGUACUAUUGAUGCUUCACACCUGGGCUCUCCGGGUACCAGGACGG----UUUGAGCAGAUCUUUUUUUCUGUUUUCACGG
cb3 UUGGUUGGUUU-AUAUGUAUCAGAUGCUUUCGGCCUGUUCCCUGAGACCUCAAGUGUGAGCGUUCUGAACAUGCUUCACGCCUGGGCUCUCCGGGUACCAGGACGG----UCUGAGCAGACACGUUUU-------------
caeRem2 UUGGUUGGUUU-AUAUGU-UCUGAUGCUUUCGGCCUGCUCCCUGAGACCUCAAGUGUGAGCGCACUGUUGAUGCUUCACGCCUGGGCUCUCUGGGUACCAGGACGG----CUUGAGCAGACAUUUUUU-----------GA
caePb1 UUGGUUGGUUUGAUAUGA---UACAGCUCACGGCCUGCUCCCUGAGACCUCAAGUGUGAGCGUACUGUAGAUGCUUCACACCUGGGCUCUCUGGGUACCAGGACGGUUCAUUCGAGCA-ACACUUUUUUCAGUUUUUCAAA

lsy-6   chrV:10647014-10647126    View MI0000801 at mirBase   

Species Fold Score
ce4 CUAAUUUCUGA----AAAAUAA-------GCCAUCAAAUGCGUCUAGUAUCAAAAUCAU--GUAAA-AACUGUAAAA-CAGAUUUUGUAUGAGACGCAUUU----------------CGAUGACGG-GC--ACAACAGAGACACCG
cb3 ACUAUUGUCAU----GAACCUU--------CCACAGAAUGCGUCCAGUAUCAAAAUCAC--AUCAAAGAGAAUACGG-UGGAUUUUGUAUGAGACGCAUUC----------------CG-UGGCGG-GA--ACAUUAAAG--AUCG
caeRem2 GCAGCUAUUCUAUUCGAAUUUUGAUUUCCGCCACCGACUGCUUCGAAUACCAAAAUCAUGGGUAAUCUACAGUAUGC-CAGAUUUUGUAUGAGACGCAUUC----------------AG-UGGCGG-GAAGACAAGAAAG--ACCG
caePb1 UCUAUUGCUGUUCAAAAAACUU-------GCCACAGAAUGCGUCGAAUAUCAAAAUCAU--GUCAA----AAUAUGGAUAGAUUUUGUAUGAGACGCAUUUCCGUGGCUGCAAUGAACG-UGGCGGUGA--ACAACAAAG--ACCG

mir-1   chrI:6172644-6172779    View MI0000003 at mirBase   

Species Fold Score
ce4 UCUAUAU--------CUACGCU------A-UAUU-------------------CAAAGUG---------------ACCGUACCGAGCUGCAUACUUCCU-UACAUGCCCAUACUAUAUCAUAAAUGGAUAUGGAAUGUAAAGAAGUAUGUAGAACGGGGUGGUAGUGUUUUAAU-------GGUGAGUAAUU
cb3 UCUCUGAUUCAUCUGAUAUUCU------GCUAUUAUUCCAA-----------CCAAAAAACCCCU----------GCUGUGCCGAGCUGCAUACUUCCU-UACAUGCCCAUACUGUACUGUGAAUGGAUAUGGAAUGUAAAGAAGUAUGUAGAACGGAAU================================
caeRem2 UCUCUAC--------GUAUUCU------ACUAUU-------------------CGAAGAAC--------------GCUGUGCCGAGCUGCAUACUUCCU-UACAUGCCCAUACUAUAUCAGUAAUGGAUAUGGAAUGUAAAGAAGUAUGUAGAACGG---================================
caePb1 UCUAUUC--------CUAUUAUCUCCAGACUAAUAUUCCAAAUCUAUAUUCUUCGAAAAAGUAUUCUUUUGAAAUGCCGUGCCGAGCUGCAUGCUUCUUCUACAUGCCCAUACUAUAUCGUAAAUGGAUAUGGAAUGUAAAGAAGUAUGUAGAACGGAAAGGCAUGAAUUCAAUAAGAAACGGUAAGUCAUU

mir-1018   chrX:1879432-1879527    View MI0005879 at mirBase   

Species Fold Score
ce4 AUCACGCUGAUGUUGUAAAGGUAAGUUCAUGAUUUCUCCCAUAUAUUUUUCAUGAGAGAGAUCAUUGGACUUACAGAGUAUGACAAAAUCAGCAAC

mir-1019   chrI:9361567-9361675    View MI0005880 at mirBase   

Species Fold Score
ce4 AGCAACACCAAUGGAACAGGUGAGCAUUGUUCGAGUU-UCAUUUUU-------AAUAAAAUUUAUUUAAAAACUGUAAUUCCACAUUGCU----UUCCAGGUUGUGAACACAAUAAGUAA
cb3 AGCCACUCCAAUGGAGCAGGUUUGCAUUCUUUGAAGUGUCA----------------------------------CAGUUCUAUAACGUCGCAGUUCCAGGUUGUCAACACAAUUAGCAA
caeRem2 CGCUACUCCUAUGGAACAGGUGAGCAUUGUCCGAGUUAUCAGUUUUUUUGAAAACUAAAAAUCA-AUAUUAACUGUAAUUCCAUGUUGCC----UUGCAGGUUGUCAACACGAUAAGUAA
priPac1 GCCGACUCCUCUCGAA----------------------UCGAUAGU-----------------------------UAAUACUGCAUCG------------------------------AA

mir-1020   chrIII:10047620-10047729    View MI0005881 at mirBase   

Species Fold Score
ce4 ACGAACCAUCUUACAAAGCG-GUAAGUGUUACAGAAUAAUCUUAGACAAAACA----------ACUAAAAUUAAUGAAAAAUUAUUCUGUGACACUUUCAG---AAAUUCACAAUCACUGUGC
cb3 ACGAACCAUCAUACAAAGCU-GUGAG----------------------GAACACAU-------ACAAAUGUUGGAUUUUA--------UUCGAAUUUUCAG---ACUUUCCAAAUCACUCUUC
caeRem2 AUGAACCAUCUUACAAAGCU-GUGAGUUUCUCG---------------AAACA----------ACAAAAGACAGAUUUAAG-----CUUUAUAACUUUCAG---ACAUUCCAAAUCACUCUGC
caePb1 ACGAACCGUCAUAUAAAGCG-GUAAA----------------------AAUCAGAUAGUUUCAGCAAAAAAUGAAAAAAA------------GGUUUUCAG---ACUUUCACAAUUACCUUGC
priPac1 AUGAACCCGCAUUUAAAGUUUGUAUU----------------------AUACUCUCAUUU---AUUAAUUAU----------------UCUUCCCUUCCAGGCCACUUGGGAUGUGAGUGUAG

mir-124   chrIV:11871688-11871823    View MI0000302 at mirBase   

Species Fold Score
ce4 UUCGCAAUUGAUACACCAUGUCCCACUUGUCAUCUGGCAUGCACCCUAGUGACUUUAGUGGACAUCUAAGUCUUCCAACUAAGGCACGCGGUGAAUGCCACGUGGCCAUGAUGGGGCUCCCAUUGAAUUUGAAAG
cb3 UAUGUCAUUGAUACA-UUUUUUCCAGUCGUCAUAUGGCGUCCACCUGAGUGACUUUAGUGGACAUGUAUAGUUUCCAACUAAGGCACGCGGUGAAUGCCACGUGGCAAUUCUGGGA-----------UUCAGAAG
caeRem2 UAUGUCACUGA----------UCCAGAUGUCACUUGGCAUACACCUGAGUGACUUUAGUGGACAUCUCAAGUUUCCAACUAAGGCACGCGGUGAAUGCCACGUGGCAAUUCUGGAGACU--------UCUCAAAG
caePb1 UUUGUCAUCGAUACU-AAUGCCUCAGUUGUCAUCUGGCAUACACCUGAGUGACUUUAGUGGACAUCUGAAGUUUCCAACUAAGGCACGCGGUGAAUGCCACGUGGCAACU-UGAGGUCU--AUUG--UCGAUAAG
priPac1 =============================UCACUUCGCUUUCACC--GGUGACUUUAGUG-----------------ACUAAGGCACGCGGUGAAUGCCA===================================

mir-2   chrI:9372738-9372875    View MI0000004 at mirBase   

Species Fold Score
ce4 CAAU----------CGUAUUUCGACGAA-------------UCUAAACAGUA-UAC-----------AGAAAGC-CAUCAAAGCGGUGGUUGAUGUGUUGCAAAUUAUGA-CUU------------------UCAUAUCACAGCCAGCUUUGAUGUGCUG--------CCUGUUGCACUGUAAUUU---UUUA---UAGCAAAUGG
cb3 --------------UCUAUCCAGAAGAAGAACUACUCAUAUUCCUAUCCAUC-UACAG---------AGAAAGCCCGUCAAAGUGGUGUGUGUUAUGCCGCAUAA-GUGAACUUCUUUUCGGAAGUUUUGGUUCAUAUCACAGCCAGCUUUGAUGUGCUG--------UCUUGUA---UAGAAUUU---UUUGA--CAG=======
caeRem2 CCUUCUGCUAUAUAUUUUUUUGGAUGAA----------UAUUCCAUACCAUAGUAUAC---------GGAAAGCCCGUCAAAGUGGCUCGUGUUAUGUUGAAU--------CUU-------GAAGU----AAUCAUAUCACAGCCAGCUUUGAUGUGCUU--------CCUGAAG---UACUAUCC---UUUGUCA---=======
caePb1 --------------GCUAUUCCUACUAC---CUACGGAUUCUGAUUUCCAUG-UACGGUGAACCUCCAGAAAGCACGUCAAAGUGGCGCGUGUUAUGUCGGAAAU-AUGA-----------AAAG-----GAUCAUAUCACAGCCAGCUUUGAUGUGCUUGACUGUGUUCAGUGA---UGAAAUUUCGGUUUG------UCAAUG-

mir-228   chrIV:5561992-5562129    View MI0000303 at mirBase   

Species Fold Score
ce4 UUUGGCGAGACAUUU-----UCCUCCUUAUCCCGUUCGCAAUGGCACUGCAUGAAUUCACGGCUAUGCAUAACGACAGACCGCGGAUCAUACGGUACCAUAGCGGACGGUGAUGAGGUUAAUGAAGUAGUGAGAGAGAGUGG
cb3 ------------CAUAAA--GGAAUCCCACCCUGUUCGCAAUGGCACUGCAUGAAUUCACGG--AUGCAAAGCGACAGACCGCGGAUCAUGCGGUACCAUAGCUGACGGUGGUGAGAUCA======================
caeRem2 -CUGGCGAGACUCUGGAA--AGAAUCCUAUCUUGUUCGCAAUGGCACUGCAUGAAUUCACGG--AUGCAUUGCGACAGACCGCGGAUCAUGCGGUACCAUAGCGGACAGUGGUGAGAU--======================
caePb1 ------------CACAAGCUCUCCUCUCAGCCUGUUUGCAAUGGCACUGCAUGAAUUCACGG--AUGCAUUGCGACAGACCGCGGAUCAUGCGGUACCAUAGCUGACAGUGA--------======================
priPac1 =========================================================================================================================UAGAGCAGUGAGAGAGUGUGG

mir-229   chrIII:2172420-2172574    View MI0000304 at mirBase   

Species Fold Score
ce4 CUCCCAACGCGGGAAGACUCGCCGGCAAUGACACUGGUUAUCUUUUCCAUCGUGGAAUGCCCCCCAUUGAUUUUUUCCCCUUUUCGGGGGGAAAAAAUUGGAAACGAGAAAGGUAUCGGGUGUCAUAGCCGGCGUGAUCAUCUUCCUCAAGUAU
caePb1 ===========GGAAGACUCGCCGACGAUGACACUUGU====================================================================================================================

mir-230   chrX:5803830-5803967    View MI0000305 at mirBase   

Species Fold Score
ce4 UGUAUUUUUUUGUCUGAUGUU---------------GAUGUAAUGCCGUCACUUGGUCGGCGAUUUAAUAUUAUCAGAACAUAGGAAAUUGUUAGUAUUAGUUGUGCGACCAGGAGACGGUAUUCGCAUAUUUCUUAAAUAUUC-AUUUUCAU
cb3 UUCAGUUUCUCAUAUAAU----------------AAAAUGCCUUACCGAUACUUGGUCGACAAUUUAAUAGUAUCUGAUU--AAUUGAUGGAUAGUAUUAGUUGUGCGACCAGGAAAUGGUA-------------------------------
caeRem2 UGGAUGUCUUUAUUUGAUUCUUU------CCCGCAAGAUGUUGUACCGAUACUUGGUCGACAAUCUAAUAUUAUCGGUUC--UGCCAGAAGAUAGUAUUAGUUGUGCGACCAGGAGACGGUA------------UUUAACAUCA-AUUUUUAU
caePb1 U--ACCAUUCUAUUCGAUCUCUUGGAUGAGAUUGAAAAUGUGGUACCGAUACCUGGUCAACAGCAUAAUAUUAUCAAAUA--UUGAGAGUGAUAGUAUUAGUUGUGUGACCAGGAGACGGUU--------------AAACAUUGUACUUUCAU

mir-231   chrIII:7544961-7545099    View MI0000306 at mirBase   

Species Fold Score
ce4 UCUACUACUAUU--UUCAAAGUUAGCACCAC-AGGUUGUUCUGACUGUUUCAAAAGCUUGUAGUAUCUUAAUAAAUAAACAUAUAAGCUCGUGAUCAACAGGCAGAACAACUCGGUUU---UGUGUGCACGCU--GAUCCUAAUGU
cb3 UCUAU--AUUUUGCUACUA-----GCACCUCAAUGUUGUUCUGUCUGUUUCCAUAGCUUAUAUUGU-------AAGGUACUUAUAAGCUCGUGAACAACAGGCAGGACAACUGGAAGU---GGUGUUUUUUUUCAGGCAGGCAGGU
caeRem2 ACAACUAGUAUUCCCUCUAAUCGAGCACCCCGAUGUUGUUCUGACUGUUUCCAUAGCUUAUAUUGUCU----CAAAAUGCAUAUAAGCUCGUGAACAACAGGCAGGACAACUGGUCUUUUUGGUGUGCAUUUU--GAUAAAACGGU
caePb1 AGAUCU-AUAUUCCUGCUAAGCCUACCUUUUCAUGUUGUUCUGACUGUUUCAAAAGCUUAUAUUGUUCGUUCAAAGUUACUUAUAAGCUCGUGAUCAACAGGCAGGACAACU==================================

mir-232   chrIV:10994119-10994256    View MI0000307 at mirBase   

Species Fold Score
ce4 UC---C-----------------------AGGCAAGUUUGAAAAAUAAGUUCAAUUUUUGGAUCCCUGCAGUUUCGAUGAUUUUAUCCU---U--AAUUCUGAAGAUGUGAUAAAUGCAUCUUAACUGCGGUGAUCUAGAU-CA-UGAACACUUUUUUAAAAUUUAUUUU
cb3 UA---CAAAGUUUCUACCAU--AAU---AAUGUAAGUUUCU----CAAUUCAAGAUUUCGGAUCUCCGUAGUUUUGACCAUUUUAUCCAACCU--AAU------AAUGUGAUAAAUGCAUCUUAACUGCGGUGAUCUGGAUUUU-GUGAACCGUUUUU--------UUUC
caeRem2 UA---CUCAUUUCCAAGCG----------AGGUAAGUUG-------AAGUCUGAUUGUCGGAUCUCCGUAGUUUCGAUCAUUUUAUCCUAUCUCCAAC------AAAGCGAUAAAUGCAUCUUAACUGCGGUGAUCUGAAUUCU-UGGACACUUUUUU--------CUUU
caePb1 CAACUCUCUUUUUCGAGGUUUGAAUCCAAUGGUAAGUUUC------CAGUCCUUUUUUCGGAUCCCCGUAGUUUCGAUCAUUUUAUCCUGCCC--AACUC--AAAAAGUGAUAAAUGCAUCUUAACUGCGGUGAUCUGAUUUCAAUGGACACGUUUUC--------AUUU

mir-233   chrX:12078489-12078626    View MI0000308 at mirBase   

Species Fold Score
ce4 UGGAGCAU-----GAA--AUGCCCCUUAUAUA-GCAUCUUUCUGUCUCGCCCAUCCCGUUGCUCCAAUAUUCUAAC-AACA-AGUGAUUAUUGAGCAAUGCGCAUGUGCGGGAUAGACUGAUG-GCUGCUUUUUGUCCGGAG---CAACUU
cb3 UGGAGCAA-----GA---AAAUAACUGAAAUAAGCAUUUUUCUGUCCCGCGCAUCCCUUUGUUCCAAUAUUCAAACCAGUAGAAAGAUUAUUGAGCAAUGCGCAUGUGCGGGACAGAUUGAAUAGCUG=======================
caeRem2 UGGAGCAAUAAAUGA---AAACUCCUGAA----GCGUCUCUCUGUCCCGCUCAUCCUGUUGUUCCAAUAUUCCAAC-AGCCCAGUGAUUAUUGAGCAAUGCGCAUGUGCGGGACAGAUUGUAU-GCUGCCAUUUGUGCCGCGGUCUCAAAA
caePb1 UGGAGCAA-----GAUCUAUAUUAUUCAAA---GCGUCUUUCUGUCUCGCCCAUCCCGUUGUUCCAAUAUUCCAAC-AACA-AGUGAUUAUUGAGCAAUGCGCAUGUGCGGGACAGACUGAUG-UCUGCUAUUUGACCCGGGGGCAGAAUU

mir-234   chrII:14466139-14466274    View MI0000309 at mirBase   

Species Fold Score
ce4 GUUCUAUGUAAGUUGAAACACAAAAAAUGAUCAAACGGUAUUCCAGAGUUGAUAAUAAAAAUGC-GUCAGUCCGCAAUCUAUUAUUGCUCGAGAAUACCCUUUGACUACUAU---GUG-UACGUUUUUAUUAGAAUUUAA
cb3 CCUCUUUG---------ACUCUAGCAAAGAUCAAACGGUAUUCCUGAGUGAAUAAUAAAAAUGA-------GUCCAUUCUAUUAUUGCUCGAGAAUACCCUUUGAC==================================
caePb1 ==============================UCAAACGGUAUUCUUUGGUUAAUAAUAAGGAUGGCAUCACGACUCAUUAUAUUAUUGCUCAAGAAUACCCUUUGACAAAUGUCGCGUGACAUCCUUUUAAUAAAAUUU==

mir-235   chrI:6162273-6162409    View MI0000310 at mirBase   

Species Fold Score
ce4 UAUUCGUUUGCUGAAAAUCGUCCGAAGAUAUCA--------GGAUCAGGCCUUGGCUGAUUGCAAA-AUUGUUCACCGUGAAA---AUUAAAUAUUGCACUCUCCC-CGGCCUGAUCUG-AGAGUAAGGCGAAGCUGAAUUGACUUUAAU
cb3 -----------------AAAUCUGAAAUCUU----------GGAUCAGGCUCUGGUCAUGUGCAUAUAUUGCGCUAUAUA------UGCUAAUAUUGCACUUGACCAUGGCCUCGUCUAGAAAGUAAGAC====================
caeRem2 ----------------ACAAUCUGAAAAUCA----------AGAUCAGGCCUUGGCCGAAUGCAUAUAUUGCUCAGUUGAAU----UGCUAAUAUUGCACUCGCCC-CGGCCUGAUCUA-AAAGUAAG--====================
caePb1 GAAAAG--------AAGAAAUCUGAAAAUUUCGAAAAAAAAAGAUCAGGUCCUGGCUGACUGCAUAUAUUGCUCAACGUUAAAGAAUGCUAAUAUUGCACUCGCCC-CGGCCUGAUC-------------====================

mir-236   chrII:7030093-7030230    View MI0000311 at mirBase   

Species Fold Score
ce4 UUCGGCUACUGUCGUAUUCUUCGGUGACCGAUGUCCAGCGUCUUACCUGUUCAAUAUUUAGACUGAC-UAUCAAAGAGAUCUAAUACUGUCAGGUAAUGACGCUGGAUUGUCAUGUCAUUUCAAAAAAAAAA--CAGGUA
cb3 UUCGGCUACUGUCCUAUUCGAAAGUGACCAAUGUCCAGCGUCUUACCUGUUCAAUAUUUAGACUGACCAAACCCAUAGCUCUAAUACUGUCAGGUAAUGACGCUGGAUAGUCUUGUCAUUGAUAA---------CAGGUA
caeRem2 UUCGGCUACUGUCCUAUUCUUUGGUGACCGAUGUCCAGCGUCUUACCUGUUCAAUAUUUAGACUGAUUAGCUCAUGAGAUCUAAUACUGUCAGGUAAUGACGCUGGAUUAUCUUGUCAUUUAUGAUAAGCAACACAGGUA
caePb1 UUCAGCUACUGUCCUAUUCUGAGGUGACCGAUGUCCAGCGUCUUACCUGUUCAAUAUUUAGACUAAC-ACAUCAAGAGAUCUAAUACUGUCAGGUAAUGACGCUGGGUAAUAGUGUCGCUUAUUUGAAAUCA--ACGGUA

mir-237   chrX:8154005-8154143    View MI0000312 at mirBase   

Species Fold Score
ce4 UAUU-CAAGCUGUUCAAAACUUCUACAUUGCGUGGUCCCUGAGAAUUCUCGAAC-AGCUUCAAAGUG-UUCAAGCUGUCGAGUUUUGUCAAGGACCAAACAAUAGAAGAUCACUUGGGAACAAUCAUAAUUUAUAAUAUGA
cb3 UUCU-UUAGUCUU----GAAAACCAUGUUUGGUGGUCCCUGAGAAUGCUCCGAC-AUCUUCGAAGUA-GCGUAGCUGUCGAGCACCAUUGGGGACCA-------------------------===================
caeRem2 UUCUCUCAGUAUUCCCCAGUUACCGUCUUUGGUGGUCCCUGAGAAUGCUCUGACUGCUUUCGAAGUACACGCAGCAGUCGAGUAUCCUUAGGAACCAGUAAAUUACGGUUCUUUUUUGAAUA===================

mir-238   chrIII:8867215-8867352    View MI0000313 at mirBase   

Species Fold Score
ce4 AUUUUCAAGAAAAUGGCAAUUCUCCAUU----GACUGUUUGGAUGUUCUCGGACGUUCAAAGCUACAUCCAACA---AAUUGGUAGCUUUGUACUCCGAUGCCAUUCAGAUAGUUAUGAGCCAUGGAUGUAUUG--UUGAGGUA-AG
cb3 CUUCCAAAACUUCUUCUUAUCCUCAUGAAUAUGACUGUUUGGGUGUCCUUGGAUGUAAAAAGCUAUAAAUCUGUUAAGAUU----GCUUUGUACUCCGAUGCCAUCCACAUGGUCUGACGACAAGAAGAUAUGGAAAUACAGUA-AG
caeRem2 ---UCAAAGUCAACGUGGACCACUGUGA----UACCAUUUGGGUGGACACGGACGUAAAAAGCUAUGCCCGUGGUUAGGUAUUUAGCUUUGUACUCCGAUGCCAUUCAAAUGGUUGUGUGG--------UUUUGGAUUGUGGUA-AG
caePb1 CCCCUAGACCAGGUUCCAG-------------GACCGUCUGGAUGUGAUCGGGUGUAAAAAGCUAUCCACGAAG---AAUC----GCUUUGUACUCCGAUGCCAUUCAGAGGGUUUUCCAA-----------------AUGGUCCAC

mir-239a   chrX:11792347-11792484    View MI0000314 at mirBase   

Species Fold Score
ce4 UCACUCAGUCAAAUAACUCUACACGUU-------UGCAAUUUUUGUACUACACAUAGGUACUGGA-----CAAUUUUCAAAAUA-----UAUCCAGUGUCUAGUCUAGUGCAAACAUUGCUCGGUGUUGUUUGAAAAAUAAGCUACUUUGUUUU
cb3 UUACUAUUCUCUAGAGAAUGACGAUCCAAGUUUAUGCGAUUUUUGUACUACAAUUAGGUACUGGA-----CA----CCAGCAGCGAGUGUAUCCAGAAUCUAUACUAGUACAAAAAUAGCU=================================
caeRem2 UUAUUCUACUAUAUUCCUCCACAAUCCAAGAU--UGCGAUUUUUGUACUACACAUAGGUACUGGA-----CA----CUGAGAUU---UGUAUCCAGAAUCUAUUCUAGUGCAAAAAUUGCUCUGGAUUCUUUUUUCCCCAA--UACUU--UUCG
caePb1 AGUUGAU-------------AUAACCUGAAA---UGCGGUUUUUGUACUACACAUAGGUACUGGAAAACUUA----CCACAGAU-----UAUCCAGUGCUUGGU-----------------=================================

mir-239b   chrX:11791204-11791341    View MI0000315 at mirBase   

Species Fold Score
ce4 --------------------UAUUAUUCUGAAAAG-----------UUACA-------------GCGACA--GAUGCAAUUUUUGUACUACACAAAAGUACUGGUCAUUUAAGUUGAGGCUCAGCACUUUUGUGGUGUGCAAAAAUGGCAAGUUGCUUUUAUCUCAAUGAGAACGUCACAUUG
cb3 AUU-----------------UACUCCUAUUUUCUGAUGGGCCAACAUAACCAGGUAGGGU----AGGACAGACAUGCAAUUUUUGUACUGCACAAAAGUACUGACUAUUU---------CUCAGCGCUUUUGUCCAGUGCAAGAAUGGCAAG-==============================
caeRem2 AUUCUUCUGGCAACAUUCCAUAUUUUUUUCUUAUUAUUGGC-----UUGCCAGGUAGGUUUUACAAGACA-ACUUGCAAUUUUUGUACUGCACAAAAGCUCUGACUGCUCUGAUA-UGGCUCAGCACUUUUGUCU-GUGCAAAAAUGGCGAAU==============================
caePb1 --------------------UAGUAUUCUGCUAUGAU--GCUGCCAUUCCAAA-----------CUGACA-AGUUGCAGUUUUUGUACUUCACAAGAGUACUGGCGGUUCAGGUC-CGGCUCAGAACUUUUGUGGGGUGCAAGAACAGCAA--==============================

mir-240   chrX:7882545-7882681    View MI0000316 at mirBase   

Species Fold Score
ce4 CCUGUCUAUUGCUAUUUCGUUGUU------AGAAACU-UUUUCAAAUCGAGGAUUUUGAGACUAGAAUGCUUGAA---UUGUACU--AGCAUACUGGCCCCCAAAUCUUCGCUUAGAAAUACAGUUCACAAUUAUUUUAAUGGUGAGU
cb3 GCUAUUCUCUUCGCUGUCUUUAUUU-----UGAAACUGUUUUCAAAUCGAGAAUUUCGAGGCCUGAAUGCAAGAACCGUUUUG----AGCAUACUGGCCUCCAAAUUUUCGCUUUGAAUUUUAGUUACGCGUGGUG------------
caeRem2 CCUACCUGCUUCCAACUCUACAAUUCUACCUAAAACUGUUUUCGAAUCGGGAGUUUCGUGGCCUGAAUGCGUGAACGCUUGUGCUUUAGCAUACUGGCCCCCAAAUUUUCGCUUUGAAUUCUAGUUGUCUUUUAUU----------GC

mir-241   chrV:14365975-14366110    View MI0000317 at mirBase   

Species Fold Score
ce4 GCU----------CUUUUUGUA-------------CCAAACCGCG--------GGGGUGUCAAAGUUGAGGUAGGUGCGAGAAAUGACGGC-AUCCAUAUAGUAAUCGU---UCAUUGUCUCUCAGCUGCUUCAUCUGUGACAUGGCUACGCUAUUUUUUUCACUU------------GGAU
cb3 GUUGUGCCUGUUCCUUUCUUUUGUACCUCUU----CCGCAAGACG-----------GUGUCAAAGCUGAGGUAGGUGUGAGAAAUGACGAA-AGGC---UCUUAAUCGU--UUCAUUGUCUCGCAGCUGCUUCAACUGUGAUUUACCGACGCAGUUCUGGCUCUUUUUUGAUGGAGGGGAAU
caeRem2 GUUGUACU-----CUUUUUGUGGUCCAACAUGCCGCCACAUAACAAAAAA-GCGACGUGUCAAAGUAGAGGUAGGUGCGAGAAAUGACGGA-ACCU---CACAAAUCAUCGUUCAUUGUCUCGCAGCUGCUUCAACUGUG==========================================
caePb1 UUUUUGUCCGUC-CGGUUUGU--------------CCUCAAAGCAAAAAACAAGGGGUGUCAAAGUAGAGGUAGGUGCGAGAAAUGACGGGCAUCG---UGCAAAUCGU---UCAUUGUCUCCCAGCUACUUCAACUGUG-------------AUUUCAACCCUUU------------GAAU

mir-242   chrIV:4274220-4274355    View MI0000318 at mirBase   

Species Fold Score
ce4 UCUAUGAAUAGUUCCCUCGUGGCUCGCGAGAGUAUUGCGUAGGCCUUUGCUUCGAGAGAGAAGCUUCAGUUCGCAGCAAUAUCCUCCGCAAAACUUUCCCCGGCUAUGCAAAAAAUGGUAAGAAAGUAUUUAUUU
cb3 =========================================================================================================ACACAAAACAUAGUAUUA---UCUUUAUUG

mir-243   chrIV:4450752-4450889    View MI0000319 at mirBase   

Species Fold Score
ce4 GUGUUACUCACAGAAAUUCUGUUCACGCAUAAGCCUGAUAUCUCGGUGCGAUCGUACCGUAUCGCUCACACUUAGAUUACGGUACGAUCGCGGCGGGAUAUCAGGUACGUGAUUGGAAGCUGUGCAAUUCUGCGGAA

mir-244   chrI:4684297-4684435    View MI0000320 at mirBase   

Species Fold Score
ce4 UUUUAAUUUUAAUUUUUUCCC-UCCAUAUCUCAAUCUCUUUGGUUGUACAAAGUGGUAUGGCUCAUCGAAUAA----GCACAUACUGCUUUUCAGCUAAAGGAAUUGAGA--UUUUGUAGGCUUUUUCAUUUUUACAUCCAUGUU
cb3 -----AUUUUCUUUUACC----CAAAUUUCUCGAUUUCUUUGGUUGUACAAAGUGGUAUGGCUCUCUU---------GCUCAUACCGCUUUACAGCUAAAGGAAUCGAUUGAUUUUGGAAACAUUUU------------======
caeRem2 -----ACUCUAUUAUUCCUUCUCCAGUUUCUCGAUCUCUUUGGUUGUACAAAGUGGUAUGGCACUUCUCAAUAGUCUGCUCAUACCGCUUUUCGGCUAAAGGAAUCGAGU--CUUUG----------------------======
caePb1 -----AUUCUGAUUUUUCCGC-CCCAUUUCUCGAUCUCUUUGGUUGUACAAAGUGGUAUGGCAAUUUCAUUAAAAAUGCUCAUACCGCUUUUCAGCUGAAGGAAUCGUGU--UUGUGGGUAAUUA--GAAUUCUGAAUC======

mir-245   chrI:7887344-7887480    View MI0000321 at mirBase   

Species Fold Score
ce4 ACUUUCUGAUAAUU----------------------AUUC-----------------------------ACUGAAUUCAAUGUUGGAGAGCUAUUUGCAAGGUACCUAAUUGUUUGAUUAUUGAUUCUCAAUUGGUCCCCUCCAAGUAGCUCUAUUGCAUUGU--UUGCUUAUUU----------UCCCCCGA--------AAAUGG
cb3 UUUUUCGAUUGAUCCUUCGUUUUCAUCGUCUUCUUAUUUC--UACUUAUUCUAUUCUAUGAUGAAAUGGAUUGUAUUCAAUGUCGAAGAGCUGCUUGCAAGGUACCUAAUUGUUUG--ACUCUAUUCUCAAUUGGUCCCCUCCAAGUAGCUCUAUUGCAUUGU------UUAUUUAGAGUGAUCUUUUUUUAAACAUUCAUAAAUAG
caeRem2 UUUUUGUGAUGA--------------CGUCUUCUGAAUUC-----------------------AAA------GUACUCAAUGUCGAAGAGCUGCUUGCAAGGUACCUAAUUGUUUG---CACAUUUCUCAAUUGGUCCCCUCCAAGUAGCUCUAUUGCAUUGU------UUGUUU----UAUUAUUAUUAUAA----UGAUAA--GG
caePb1 UCUCCCUGUUUAUU------------CGUAUUCUUGGCUGAAAAUUUAUUUUUCCCAAAAUGAAAAAAAAUAAAAUUCAAUGCCGUGGAGCUGCUUGCAAGGUACCUAAUUGUUUGA-AAUUCAUUCUCAAUUGGUCCCCUCCAAGUAGCUCUAUUGCAUUGUGUUUGAUUGUUU----------======================

mir-246   chrIV:10940084-10940220    View MI0000322 at mirBase   

Species Fold Score
ce4 CUGCUACACAAUAUUCAGCAUCUGAAUUAUAAAACAUCGCCUAACCGUUGUCAUGUAAUAUUUCCCAGAGAAAAUGA-UAUUACAUGUUUCGGGUAGGAGCUGUUCAAACUUUGGACAUUGGCAUCUCUUAUUUUAAA
cb3 -----CCAUUCUGAAAAG--UCCUAGUGAUAAAACAGCACCUGGCCAAUAUUAUGUAAUAU--CAGAAGCAAAUUGAUUAUUACAUGUAUUGGGUAGGAGCUGUUCAAGCUAUGG-----==================
caeRem2 -----AUAUUCUGUUCAG--UCCAAACAAUAGAACAGCACCUGGCCGAUUUCAUGUAAUAU--CUGAAAAGAAAAGA-UAUUACAUGUAUCGGGUAGGAGCUGUUUGA------------==================
caePb1 ------UACUGAAUUUAU--CUCACAAAGUACGAGAGCACCUGGCCGAAAUCAUGUAAUAU---UGCAAUGAGUUC--UAUUACAUGUUCCGGGUAGGAGCUGUCGAAGAUGUGAACGUU==================

mir-247   chrX:4756919-4757056    View MI0000323 at mirBase   

Species Fold Score
ce4 GCACACUAGUUGUCUACAAAUUA----------CCAGCUAUUUUCCAAGUAGAGAAAAGUUUCUAAUUACCCAUCAUGCACAAAUGUGGUGACUAGAGCCUAUUCUCUUCUUGGAAAAGUGGCGACUCUUGUCAAAAGUAUUAUCUG
caeRem2 GUCUUUUAUUCUUCUCCACUAUAAUAUUCAAACCCAAUCUUCUUCCGAGCAGAGAAUCGCCCCUAGUGACCCACCACAGUAGUGUGAGGUGACUAGAGCCAAUUCUCUUCUUGG=================================

mir-248   chrX:2262346-2262483    View MI0000324 at mirBase   

Species Fold Score
ce4 UUAGCAUAAAAUGUUACUACUUUCCCGGCUGCAACUACGGUAAGCGGUAUCCAGCCGAUGUUUUCAAUACUGCAU-UUGAAUACACGUGCACGGAUAACGCUCAUUGUUUUUCGCAUGCCAAUUUCACAAAUGGAAAG
cb3 ====================================ACGAUAAGCGCUAUCCUUCCGUUGUAUUCAAGCUUGGUUGUCGAGUACACGUGCUCGGAUAACGCUCAUCG-----------------==============
caeRem2 CUAGUAU------------UUUU--UGGCAGAGAUUACGAUUAGCGAUAUCCAGCCGUUGUAUUCAAUAGCGCAU-UUGAGUACACGUGCACGGAUA-CGCUCAUCGUUUUUGUAUUGCCACUU==============
caePb1 CUGGUAU------------UUUUCUUGGCAGUUAUCACGAUCAGCGCUAUCCAGCCGUUGUAAUCAAGAACGGAGGUUGACUACACGUGCACGGAUAACGCUCAUUG-UCAUAGGUUGCCAUUUUUAAAGUUAAGAAG

mir-249   chrX:3006411-3006547    View MI0000325 at mirBase   

Species Fold Score
ce4 CUAUU----------GCAUAUUGUGUAUCUAUACUCUUGAACGACUAGCAACGCACAAACGUCUUCUGUGCGACAACAUCU-GAAUGUUUGUCACAGGACUUUUGAGCGUUGCCAGUCGAAAGAGGAAUUUUUUUAUACAAAUUA----AU
cb3 CUAUU----------UGUUAUUUUGUGC---GCCCUCAAUGCUACUAGCAACGCUCAAA-AAUCACUGUACGACAAAUGAC-UAUAUUUUGUCACAGGAUUUUUGAGUGUUGCUAGUCGGAGAAGGGCCGUCUUGAAAUAAUUCA------
caeRem2 CUAUUCUCUCAUUACUUCUAUUUUGU-------UUUCUACGUGACUAGCAACGCACAAA-AGUUUCUGUGCGACAAAU-AU-GAAAUUUUGUCACAGGACUUUUGAGCGUUGCUAGUUGAAAGAAGAUUCACUAUGAUCAGAUCAGGUAAG
caePb1 ---------------UAUUUUUUUGU------CUCUCUGAGCUACUAGCAACGCUAGAA-GUCUACUGUUAGACAGAGUACAGAAAUUUUGUCACAGGACUUUUGAGCGUUGCUGGUUAAUGAGAGCCUAUUUU--AGUAAUUAG--UAAG

mir-250   chrV:11769704-11769842    View MI0000326 at mirBase   

Species Fold Score
ce4 UAUUCAAA---------------CUACUAU-AUUCAAGGGUCUUCGGACCACGCCUUCAGUUGCCUCGUGAUCCGCCAAACACAAUAAAUGGACGAAUCACAGUCAACUGUUGGCAUGGUGCUCGUACCCA-----UUUUGUAAGUU-------------------AACAAAGUUUC-----------A
cb3 UAUUCAAGCUACCAUUCCGUAUUCUGCUAUUAUUCAAGGGUCUUCGGACCACGCCUUCAGUUGCCUCGUGAUCCGCCGAAUCUG-UA-AUGGACGAAUCACAGUCAACUGUUGGCACGGUCCUUGAAGUUCACCAUUUUUGAAGGUUUGGAUUCCUUUGGAAACUUGAUAUCAUUUUGUAGAGAAUAUA
caeRem2 UAUUCA-----------------CUGCUGUUAUUCGAAGGUCUUCGGACCGCCCCUUCAGUUGACUCGUGAUCCGCCGACUUUGAUAUAUGGACGAAUCACAGUCACCUGAUGGUACGGUCUUUGAAUUCC----------------UAUAUUAUUAUGGUAA---GAUAAAAUUUUA----------A
caePb1 UAUUCA-----------------AU-CUAUUAUUCAAGGGUCUUUCGACCACGCCGGCAGUUGCCUGUUGAUCCGCCGCAAUUA-UG-AUGGACGAAUCACAGUCAACUGUUGGCACGGUCUUCAAAGCCC--AGCUUUUGAAGGUUUGGUUUAGUAGGGAUA---G---------------------A

mir-251   chrX:11004632-11004768    View MI0000327 at mirBase   

Species Fold Score
ce4 CUAAAAUGUUAUUAAUUCA--ACUUUCAAUGACCCCUUGUUAAGUAGUGGUGCCGCUCUUAUUAGGUUG-AAAAGUAAUAAGAGUAGUUCACUACUUAUCAAGGUGAAAUUUGAAAUUUUAUUUCA-AUGUGAGUACACU
cb3 AUACUGUUUU-----------GUCCCAAAUGACAUCUCGUUAAGUAGUGGUGCCGCUCUUAUUAGAAUUAUCAAGUAAUAAGAGUUGUUCGCUACUUAACGAGAGGAAAUUUGGAAAGAUGUGUCAGUUGUGAG======
caeRem2 AUACAGCUUUAUUCGUUUCUCGUUCCAAAUAACCCCUUGUUAAGUAGUGGUGCCGCUCUUAUUAGAAUC-CAGAAUAAUAAGAGUCGCUCACUGCUUAUCAAGGUGAAAUUUGG------GUUU---UUGUGAG======
caePb1 -UACUAUUUCAUUACUUUUU-AUUCAAAGGACCCCCUUGUUAAGUAGUGGUGCCGCUCUUAUUAGAUGA-GAUAGUAAUAAGAGUUGCUCACUACUUAUCAAGGUGAGUUUUG-------AUGU---UUUUGAG======

mir-252   chrII:11446752-11446889    View MI0000328 at mirBase   

Species Fold Score
ce4 CGUCAUUCUGA--------------UCUUACUAUUCC---AGGGGUCUCUUUCAGUUAUAAGUAGUAGUGCCGCAGGUAACCGCCAGUCUAAA----AGGCUUACCUACUGCCUUCUGCUUAAAAUUGAAAUAUUGAUGACCAU-------------UGAUUGUUUACCUG
cb3 CAGUAUUCCAU----UUUUGAUUCCUAUUCCUAUUCCAACCGAGGUCUCUCCCAGUUAUAAGUAGUAGUGCCGCAGGUAACCGCU--UCCAGAAAAUUGGUUUACCUACUGCCUUCUGCUUAGAAUUGGGAUUUUGAUGACCGUCUAUAAUAAUAAUAA-UGGUUUACCUG
caeRem2 CAGUAUUCUUUCUGCUUCUGCUGCUUUCUUUUAUUCU---UGAGGUCUCUUUCAGUUAUAAGUAGUAGUGCCGCAGGUAACCACU----CAAAUAUAUGGUUUACCUACUGCCUUCUGCUUAGAAUUGAAAUAUCGAUGACCGU------------------ACUUACUUG
caePb1 CAGUAUUCAUUCUGCUUUCCCCGGCUUUCUAUAUUCCUUUUUUGGUCUCUUUCAGUUAUAAGUAGUAGUGCCGCAGGUAACCGAU--UUCAA-----UGGUUUACCUACUGCCUCCUGCUUAGAAUUGAAAUUUCGAUGACCGUCUUUUGUAAUAAAAGGUUACUUACUUG

mir-253   chrV:5780301-5780447    View MI0000329 at mirBase   

Species Fold Score
ce4 AAUUUUCAAAUAUUUA----UUUAGAA---UUG-UUCCGAUCGCCGCUCUUUUCACACACCUCACUAACACUGA-CCACCGAUGCAUAGAUGUUAGUAGGCGUUGUGGGAAGGGCGGCGACAGUGAACGUCGUUUCUCAUUAUAAAUUACUACUG
cb3 ACAGUUUUGAUUUUAA----UUAACAACAUUU--UUCGAGUUUCAGUCCUUCUCACACACCUCACUAACACUAA-CUACAGAUUUCUAGAUGUUAGUAGGCGUUGUGGGAAGGGCGGAGAUGACGAAUACUUU------GUGCAA----------
caeRem2 AUUGUUUU--UUUCAAAUUUUUAACCACAUUUAGUUCGAGUUUCCACCCUUUUCACACACCUCACUAACACUAA-ACACAGAUUGAUAGAUGUUAGUAGGCGUUGUGGGAAGGGCGGCGAUGACGAGCACAUU-------UACAAAAU-------
caePb1 CUUUUUCCUAUUUGCA----UCCUGAAUACUCA-UUCGAUGUUCCACCCUUUUCACACACCUGACUAACACAAAACCGCAGAUGUAUUGAUGUUAGUAGGCGUUGUGGGAAGGGUGGCGAUGAUGAGCAUAUUUUC---AUGAAAAAUCCUA---

mir-254   chrX:11333437-11333576    View MI0000330 at mirBase   

Species Fold Score
ce4 ACUCCGCAUGCUGAGCACGGACUA-UGCAUAUUGCCGCCUACAGAAGCAUAGAUUUCCACAAACCA-UUCGAGGUGUUUGUGCAAAUCUUUCGCGACUGUAGGCGGCGAACAUGCAGUUUUU-------UCGCACUUGGUCUGUCCUU
cb3 AUUCAGCACCUC---CACU--CUA-UGCGGGUUGCCGUAUACAGAAGCAUCGAUUUUCACACGCCA---UGAUGCGCCUGUGCAAAUCUUUUGCAACUGUAUACGGCGAUUUAGCAG------ACCAUAUUGCACCUUGUGAUUGUUA
caeRem2 AUUCCGCAUGAUGAGCACU--AGAAUGCAUAUCGCCGCUUACAGAAGCGUGGAUUUUCACAUACCAAUCGGAAGUGUCUGUGCAAAUCUAUCGCAACUGUACACGGCGAUACUGCAGUUAUUGAACACCUUGCACUUUGU--UUUUUG
priPac1 A--------------------AUA--------------AUACAAGAUCAAA----UCCACAACCCG==================================================================================

mir-255   chrV:5440431-5440580    View MI0000331 at mirBase   

Species Fold Score
ce4 UUAU-UA---------------UCUGUUAAUUCUUCAGUGGU-UCGACUAAAUUUUGGAGGUAAGAAAUCUUUGUAGUUCUCCGUAUUGUGACGUGAAAACUGAAGAGAUUUUUUACAGACUUCACAAAUUUGAAAUAUAUUCCUGCAAGUCCGGAGGGAAGUCUU
cb3 UUA--UGACC--UUCAU---AUUUUGUUAGAUGUCUCUUCAU--------UAUC----AGGUAAGAAAUCUUUGUAGUUUUCCGCGAGUCAACGUGAAAACUGAAGAGAUUUUUUACAGAUUCC==========================================
caeRem2 AUAUUUGAACUGUUCAUUUAUUUUUGUUAUAUAUAACGUUAUACUGAUAAAAUC----AGGUAAGAAAUCUUUGUGGUUUUCCGUGUUUAAACGCGAAAACUGAAGAGAUUUUUUACAGAUUCUAUAAUUUUCGAUUCGUCAACUGGGCAUCCAAAGAAAACG---
caePb1 UU---UG---------------====================================AGGUAAGAAAUCUUUGUGGUUUUCCGUUAUGAGACGAGAAAACUGAAGAGAUUUUUUACAGAUUUCAGAAUUCU----------ACU-UGCAUUCACUAAAAAGG---

mir-256   chrV:6955833-6955973    View MI0000333 at mirBase   

Species Fold Score
ce4 UAAAGACUAGCACGGCAAAUGCAAGGAGUGCAGAGGCUUA----CUAUGAGACG----------------------------GUCAAGA---------GGCGCCUCCGUCACGUGGAUACGUCGG-----GUGGAAUGCAUAGAAGACUGUACUCAAAAAAUUUUACAAAAAUAGUUAUUACUUUU
cb3 ------------------ACU----------AGACAACUA------------------------------------------GUUCAGA------------------------CAAGAAUUUAAA-----AAUAAUGGUAUG-------AUGAUUUUUUUUCCAAUGAAUCACAGU---AAACCCU
caeRem2 UAAAGACAGUCAGGCAAAACU-GAGAUAGGCAGAAAACUGAUCCCAAUGGAGCA--GUUGGUAAUGAGUUGUUUUAGAAUAGGUUUAUA------------------------UGAAAACGUAAACGCUGGAAAAUGGCAUAUAUAAAUAUGCCAUUAGCAUUAUAUAGACACAGUGUGAAAUUUU
caePb1 ----------------UAACU-------GGUGAACAUCUA---CCACUGAAACAUAAAAGGU--------------------GUUCAAAACCCGGUGAGACACCACCA----AUAAAAAUCAGGA-----AACAGUAACAGA-------AUACUG-----AUCAUGUGACUCAAGU-----UCUUU

mir-257   chrV:17140447-17140588    View MI0000334 at mirBase   

Species Fold Score
ce4 GGAAGCUGUUUGCGAAGUAAUAAUAUUUCCCGCUGAGUAUCAGGAGUACCCAGUGAUCGCCUUCACAUAUUGGGAAGAAGUAUGU----GAUUGCGUCCUGCAG-----UUCUUCCAUGAUGUACUCAGGGCCUUUAAUUUUGUACAUGC
cb3 ACGAUGAAUCCGCAUACCAAAUUUUGGUCUUAUUGAAUAUAAGAAGUAUCCAAUGACCUGCUUCACAGAUUGGGAAAAAGCAGGUCUUGUCGUGGUUCAAAUGUUGCUCAAUCCACAAGAGUCUAUCGUCUUUAUGAGCUUUGUACAUCA
caeRem2 =========================================AAUAGAACCCAAUGAUUACUUUCACAAAUUGGAAAGAAGCAUGU----UCCUGGGCCACUAGU-----ACGCCUCAGCAAAUCCUCUGCUCCAUUUCUCACAUAAACUG
caePb1 GGUUUGAAUCGCCGUACCAUAUUUGUGUUUGGUUCAU----AUUAGAACCCAGUGUUUGUUUUCACAUAUGGGUAGGAAGUAGAC-UAGUUUUGGGUCUUGCAU-----GAGACUCAUAAACCAGUUUAUUCCGUAGAUUUGGUACAUUG

mir-258   chrX:237349-237484    View MI0000335 at mirBase   

Species Fold Score
ce4 UCCAAUAGUCGAUCCGCAGGCAAUGGUUUUGAGAGGAAUCCUUUUACAUAUUUGUUGAAGUUUUCGCUCGAAUUUGUGGUCGAAUACUGUAGAAGGAAGCCUGCACGAAGUUUUGCAAAUGUCGUAGCCGAUUUG

mir-259   chrV:10538804-10538944    View MI0000336 at mirBase   

Species Fold Score
ce4 UACAUAGUGGUAAGUUCGGUUCAGUCAUUGAAACGAGUAAAUCUCAUCCUAAUCUGGUAGCAUCUUUCGAAC--CUUGCCACCGAUUUGGCAUGGGAUUGACUUGUUAAAUAGUGACUUUUU-------UCUUGCAUUUUUUGAUGAAA
cb3 --------GGUUGGUGAUA----GUCAUCGAAACGAGUAAAUCUCAUCCUAAUCUGGUUGCAUUUUCAAUACUUUUUGCUACCGAUUUGGUUUGGGAUUGGCUUGUCUAGUAUUGACAUUUUAUUGAUAUACUGAAUUUUUUGA=====
caeRem2 --------GGUAAGUGAUAUAUAGCCGACGGAACGAGUAAAUCUCAUCCUAAUCUGGUUG--------------AGUGCUACCGAUUUGGCUUGGGAUUGACUUGU--GGAAAUGGCUUUUU----------------------=====
caePb1 AAAA----GGUAAGUGAUU----GUCAGUGAAACGAGUUAAUCUCAUCCUAAUCUGGUCGCAUCACAAAACUUACCUGCUACCGAUUUGGCUUGGGAUUGACUCGU-------UGAAUUUUGACUAUUGUCCUAGUUUUCGA--=====

mir-260   chrII:3306210-3306352    View MI0000337 at mirBase   

Species Fold Score
ce4 GGCGGGACCUCCAUGUAAACGUACAACAAAAUUAUUGCGAGAGAAUUUUUUAACAUGGCGUUUGCUUUACCAGGUCGAUAGACUAUCGUGAUGUCGAACUCUUGUAGGACAAUCUGGUAUUUUGCCAAUCUUCCCUCUUACA
caeRem2 ====================================================--AUGACAUUGGCUUUUCCUGGUCGGUAUACAAUGGUCACAUUGUACUCCUGCAAGAUGAUCUGGUAUUUCGCCAAACGUCCU---UGCA
caePb1 ====================================================ACACGAUAUUCUGCUUUCCUGGUCGGUAUUCGAUCUUGAUGUCGUAUUCUUGGAGCACAAUUUGGUAUUUUCCCAUUCUUCCC---AUUA

mir-261   chrII:5968999-5969137    View MI0000338 at mirBase   

Species Fold Score
ce4 ACUUCGUAAUUUUACAAAAUG-AUGGCUUUUCUGGAUUUGUUCCCUUCACGUGUAGAAAGAAACGAGCAAAAAAAAUCUUAGUGUUAGCUUUUUAGUUUUCACGGUGAAUAUGGAUAUUUUUAAUGCUCAAAAAA------AAAA
caePb1 A------------ACAAAAAAUACAGUUUUUUUGAAU--------------UGUAG--------------------UCUUGAGGUGAAUUACCGGGGUUUCACGUUUAUUAUACAUUUUUUGAGGGCUUCAAGAACUUCAGAAAC

mir-262   chrV:18736458-18736605    View MI0000339 at mirBase   

Species Fold Score
ce4 UAUGGUUUCUCUACAAUUAGUGCAAAAUUGUAUUAAAAUAAACUUUAUUGGAUUACAAAAAAAAUGUAUCAAUUUUUCUUUUUCAUUUUUACGUUUCUCGAUGUUUUCUGAUACUGUUGCUAGCAGUUCUUUGCUCUUCUUCUCUUU

mir-264   chrX:2819227-2819359    View MI0000344 at mirBase   

Species Fold Score
ce4 UGCA-UUCGAGAAGCA-GCACUGGCGGCGGUCGACAUGUACAUAUCACC-A--GUCUGGCUUUUCCCGUUUCCGCGAGCAAGC-GGCGGGUGGUUGUUGUUAUGGGAUACCGGAGCCAAUUGAUAGCAAAUCUCCGGU
caeRem2 CUCAUUUCGAAAUGCA-G-------------UGAGGUGUACAUAUCACC-AGUGUCUGGCCUUUUCCGUUUCCGCGAGCAAGCGGGCGGGUGGUUGUUGUUAUGGGAAACCGGAGACUACUGAUAAUGCAUUGCCACC
caePb1 CUUA-UUCGAGAAGCAUG-------------CGGGGUGUACAUAUCACCAAAUGUCUGG-CUUUUCCGUUUCCGCGAGCAUGCGGGUGGGCGGCUGUUGUUAUGGGAAACCGGAGGCCGCUGAUAAUGCCU--CUAGC

mir-265   chrIV:12740393-12740518    View MI0000345 at mirBase   

Species Fold Score
ce4 UGUGGUUAUUCUGACUGUUCGGUUU-----GACUUACCCCCU-------CCUUCCGC-------UGGCC--GCCGUUUUUAUUAUGAACUUGAUGUGGUUUGAGGGAGGAAGGGUGG--------UAUUUGAACCUCUGUGAUGAAAAAG-------CCGA
cb3 UG-GUUAGUUUUGACUGUUCG-----GA--GACUUCCUGCCU-------UCUUGUUCAUACGAUCGCCC--GCCAUUUU-AUUAUGAACUUGAUG--GUU-------------GUGGACUGGUGGUAUUUGAACCUCAAAGAAGAGAAAA-------CGUG
caeRem2 UG-GUUAGUUUUGACUGUUCGUUUCGGA--AGUCGUCUGACU-------UCUCUCUCGGACGAAUCGCC--GCCGUUUU-AUUAUGAACUUGAUG--GUU-------------GUGG--------UAUUCGAACCUCAUUGUAGAAAGAG-------AGAG
caePb1 UG-GUU--------CUGUUCGUUUCGGACUGACUUCCUGCCUCUCUCUUUUCUUCUCGGACGAUGGAUCACGCCGUUUU-AUUAUGAACUUGAUG--GUG-------------GUGG--------UAUUUGAACCUCAUUGUAGAAAGAAGAGAAAAAGGA

mir-266   chrX:3755114-3755247    View MI0000346 at mirBase   

Species Fold Score
ce4 AUUAACUUGGAUCAGAAGCUGUCUAAACUUGGGCAAAAGUUAGGCAAGACUUUGGCAAAGCUUGAAUCCAAGUUUUGCCAAAGUUUUGCCCAACUUUUGCCCAAAUUCAGCCAACUUCUGAUCCAAGUUAAUA

mir-267   chrII:12638019-12638151    View MI0000347 at mirBase   

Species Fold Score
ce4 UGUGAGAAUUUAAAAUAAAAUAAAAGUUUCAAAACCCCGUGAAGUGUCUGCUGCAAU----CUAAAUUUUUAGAUAUAGAUGCAGUCG----------------------ACUC-------------------UUCAUUGGGUUUUCAGGAACCCGUAAAGUGUUGGCUGCAU-----------UUCC
cb3 ========================================================================================----------------------AUUC--------------------------------------------------------------------------
caeRem2 ---AAAAAUUAGGCACUAAAAAAAACUUUAAUAUCAUUAAAAAA------CUGAAAUUAUGCUGA--UUUCAAAUAUAUAUAUAUUCUGUUUUUGCCAUUGAGGUCUGGGAUUCGAAAAAAAAUUGGUCAAAGUU---UGGACGACUGACAACUUGAAAAAUAUCGGCAGCGUGGUGGGUUUGACAUC

mir-268   chrV:11136896-11137030    View MI0000348 at mirBase   

Species Fold Score
ce4 AUUCGAAACAUUUU---------------GGAGAGGAAGUGGCUUUGAAGCGGCAAGAAUUAGAAGCAGU-UUGGUGUCAGACACACU-ACUCACUCACUGCUUCUUGUUUUUUCUGCUUUCUUUG--CUUUUCCUCUGUCUUCUUCUA----ACUA
cb3 AUUCGAAACAUUUUUG-------------GGAAAGGAAGUGUCUUUGAAGCGGCAAGAAUUAGAAGCAGUUUUGGUGUCAGACACACUCACUGACUCACUGCUUCUUGUUUUUCUUCUUCUUCUUCUUCUGCUUCUUCUUCCUCUGCUAUUUUACUC
caeRem2 AUUCGAAACAUUUUGGGGGCGACGGAGACGGAAAGGAAGUGGCUUUGAAGCGGCAAGAAUUAGACGGGGU-----GGCUCGACACCACCA------------GUCUUGUUUUUUUCUUUCUUUUUC-------------UCCCAUACUA----ACCC
caePb1 AUUCGAAACAUUU--G-------------GGAAAGGAAGUGGCUUUGAAGCGGCAAGAAUUAGAAGCAGUUUUGGUGUCAGACACACUCA--------CUCCUUCUUGUUUUUUCUUCUCUUUUUU-CCUUCUUCUUCUUAUUCUUCAA----ACUC

mir-269   chrIV:273880-274013    View MI0000349 at mirBase   

Species Fold Score
ce4 ACAGAAGUUGGCUAAACUUGGGCAAAAGUUGGGCAAGACUCUGGCAAAACUUGGAUUUAUGCUGCGCCAAAGUUUAACCCAAGUUUGACCCAACUCUUGUCAAAUUUUUGUCCACAUUUAAAGCUAAAAAAGG

mir-270   chrIV:3258431-3258565    View MI0000350 at mirBase   

Species Fold Score
ce4 AGGUUUUAUGUAGGCACAAAGUCGCUAGCCUCUUUACCUGCCUACACACCUUUCUGCCUACGUGGCACAUUGGUAGGCAAGAGGGCAUGAUGUAGCAGUGGAGAUGGACUGCCACGAAAAGCUAAGGUAGGCGC

mir-271   chrX:3411971-3412105    View MI0000351 at mirBase   

Species Fold Score
ce4 UUGUGAGAAA------GAGGAGGUCAAUAGAAAACGGGGCCCGCCGGC--UCGCCG----------GGUGGGAAAGCAUUC---GACAGCAAGACGUGUUUUUCAAUCUGCGACUCGGCGAUUCCCAUCAUCACUCGA---CAAUCGAGA--AACGGAGG
cb3 UUGUGAGAAAGAGGAGGAGGAGGUCAAUAGAAAACUCGCCGGCUCGGCCGUCGCCGCCGGCCCAUCGGGUGGAGAGCAUUCGAAGACAGCAGAAUGUCUUGUUUCGUCUGCGACUCUGCGAUUGCCGCUGUCUAUGAG---AAAUGAUGGGAAGAAAAGG
caeRem2 UUGUGAGAAA------GAGGAGGUCAAUAGAAAACGAAGCUGGCCGGC--UCGCCGCCGACCC-UCGGGUGGAGAGCAUUCGACGACAGCAAAACGUCUUUUGAUUUCUGCGACUACGCGAUUGCAAUGAACUCUAAAUACAAAUGAGAAGAAAAGAAGG
caePb1 UUGUGAGAAA------GAGGAGGUCAACAGAAACGAGCCCGGGCUGGC--UCGCCGUCAACCU-CUCGGUGGAGAGCAUUC---GACAGCAAAAUGUCU--UUAUUUCUGCGACUACUCGAUUGCAGUGAGCACUCAA---UAAUGGGAG--AAAGGAGG

mir-272   chrIII:11637827-11637961    View MI0000352 at mirBase   

Species Fold Score
ce4 CCUAUAAGCAUGCGUAAAUCCGCAGGCACGUGCAGGUAUGUAGGCAGGCGUAGGCCCGUAGGCAAGUGUAGGUCUGCAGGCAUGAAUGUAGGCAUGGGUGUUUGGAAGACCUGCGAAAAUUAUUUUGGAAUUCA

mir-273   chrII:14946914-14947047    View MI0000353 at mirBase   

Species Fold Score
ce4 UCAGAUGUAUAUUUAAUGAACCUCGUUUUGGGAGCAGCCGGCAUUUUACGGGCUACACUUUUUUUAAAAUUGAUGUGUGCCCGUACUGUGUCGGCUGCUUUGAAAAUUUCGGUCAAUCUACACCGAGCAGCCG

mir-34   chrX:2969723-2969859    View MI0000005 at mirBase   

Species Fold Score
ce4 ACUGACUAUUAUUCUUAU----AAC--GGACA-AUGCUCGAGAGGCAGUGUGGUUAGCUGGUUGCAUAU-UUCCUUGACAACGGCUACCUUCACUGCCACCCCGAACAUGUCGUCC---AUCUUUGAACACUGGUGAGUGAA------------------------------------------------AGUUU
cb3 ------------------UGUAAAA--GCACUCAUGGUCGUGAGGCAGUGUGGUUAGCUGGUUGCAUACACAGGUUGACAACGGCUACCUUCACUGCCACCCCGAACAUGUAGUCCUCCAUCUUUGAACAGUGGUGAGUGAAUUUAGUUAGGUGGGGAACUAGUAACGAAACAAAAAAAACCUUCGGGUGAGUUU
caeRem2 ACU----CCUAUCUUUAUUAUAAAC--GGACG-GUGCUCGAGAGGCAGUGUGGUUAGCUGGUUGCAUAU-UGAAUUGACAACGGCUACCUUCACUGCCACCCCGAACAUGUAGUCC---AUCUUUGAACACUGGUGAGUGAAUUU-----------------------------------CUGUCGAG--AGUAU
caePb1 ACUAUAGCUAUUCCUUAUCAUUAACCAGGACG-AUGCUCGAGAGGCAGUGUGGUUAGCUGGUUGCAUACUGACAUUGACAACGGCUACCUUCACUGCCACCCCGAACAUGUAGUCC---AUCUUUGAACAGUGGUGAGUGAAUUU--------------------------------------UCGAG--AGUGU
priPac1 ====================================CCCGGGAGACAGCGUGGUUAGCUGGAUGCGACCUAUCUUUGUCUACAGCUCACUACACUCCCUCCCUGGA=========================================================================================

mir-35   chrII:11537497-11537633    View MI0000006 at mirBase   

Species Fold Score
ce4 UUCCAUUCCCAACUAUUAUUC-----------UCGGAUCAGAUCG---AGCCAUUGCUGGUUUCUUCCACAGUGGUACUUUCCAUUAGAACUAUCACCGGGUGGAAACUAGCAGUGGCUCGAUCUUUUCCACU---UGCUCCACCGCUGUCGG
cb3 U---------UUCUAUUGUUC-----------AUU-------------GAAU---ACGGUUUCGUU--------------------------------------------GU-------CAGCCAUUUCCGGUUGAUGUUCCAUUCCUG----
caeRem2 UCCUA-----UUCUAUUAUUCCAACUACUAAUAUUUCUGAGAUCCAGAGAGCCCAACUGUUUCUUUCCCCGGUAAUAAACUUCAACACGACUAUCACCGGGUAUGAAUCAGU-------UAGGCUCUUCUGGU--AUCUUCAAACCCUG-CCC
caePb1 CACUA---CCUGCUA-UAUUC-----------GUCGACUGGACCG---GACCUCUGCCAGUUUUUACCGCUGUGAUACUCCAAGAGACGGUUAUCACCGGGUGAAAAUUGGUAGAGGUCCGGUCCUUUCUUCU---UCUUUAAUUGCGU-AGG

mir-353   chrI:4585855-4586004    View MI0000752 at mirBase   

Species Fold Score
ce4 GU--AUAU-GUGAUUUUACGAGUGUUGAAGUAUUGCAAAA-------GCAAAGGACGGGCACAAUU----GCCAUGUGUUGGUAUUAUUG--CUUCAAGUUA-UUUGAAGCUGUAA------UAUCAAUAAGCAUGUCUCGUGUGAAGUCCGACAAUUUACCAUAUGCAUGA
cb3 AA--ACUUCGUAAUCUUACGAGUGUCGAAGAUAUGCAAAAU------AAAAAGCAUGGGCACAAGU----AUCAUGUGUUGGUAUCAUUG--UUUCAAGUUA-UUUGUUGCUAUGG------UAUCGAUAAGCAUGCUACGUGUGAAGUGCGACAA-------UUCAUCUAG
caeRem2 AA--ACGUCGUAAUCUUACGAGUGUCGAAGUUAUGCGAAAU------AUAAAGCGUGGAAGCAAUU----GUCAUGCGUUGGUCUUAUAG--UUUCAAGUUA-UUUGAACCUUUGA------AAUCGAUAAGCAUGCCUCGUUAGAAGUGCGACAA------------AUAA
caePb1 GA--ACUUCGUAAUCUUACGAGUGUCGAAGUUAUGCAAAAG------AAUAAGCAUGGUCACAUCU----GUCAUGUGUUGUUACCUUGA--UUUCAAGUUA-UUUGAGAUUAUGG------UAUCGAAAAGCAUGCCUCGUGAAAAAUGCGACAA---ACUGUUUAUUUCA
priPac1 UGCCGCUCCUUGCAUAUACGAGUGUCGAAUAUACGCAAAAUUAAUUGGUAGUUUAUGUGUGCAAGUUAGCGGAGUUCAUUUUUAUCGGAGUUUUUCUGGUUACUUUGAACUUAUCGGUAUCUUAUCAAUGACUAU------------------CAA---ACAAUGUUGUCUG

mir-354   chrI:14468347-14468496    View MI0000753 at mirBase   

Species Fold Score
ce4 GGAGUCGAUAUUGAGGUCACCAGAGCCGACUAAGCACCUUGGUGCGGCUGCAGACGGGUAUCCGGCUCGACGUUCAU-ACAUCAC----GAC-UUCUUUCCUUUUACC-UUGUUUGUUGCUGCU-CCUAUUGGUUUUGAUUUGUUGUGUUGGAAGUG
cb3 GGAGUCGAUAUUGAGGUCACCAGAGCCGACUAAGUGCCUUGGUGCGGCUACAGACGGGUAUCCGGCUCGAUGUUCAU-ACACCGC----GAC--UCUUUCCUUUUACC-UUGUUUGUUGCUGCU-CCUUUUGGUUUUGAUUUGUUGUGUUGGAAGUG
caeRem2 GGAGUCGAUAUUGAGGUCACCAGAGCCGACUAAGCGCCUUGGUGCGGCUGCAGACGGGUAACCGGCUCGACGUUCAU-UCAUCACC---GAC--UCUUUCCUUUUACC-UUGUUUGUUGCUGC--CCUUAUGGUUUUGAUUUGUUGUGUUGGAAGUG
caePb1 GGAGUCGACAUUGAGGUCACCAGAGCCGAUUAAGCACCUUGGUGCGGCUGCAGACGGGUAACCGGCUCGACGUUCAUCACAUCAUCCGCGACCUUCUUUCCUAUUACCCUUGUUUGUUGCUGCCACUAUUUGGUUUUGAUUUGUUGUGUUGAAAGUC
priPac1 GGAGUAGACGUUGAGGUCACCAUCGCCGACCA=============================================================================================================================

mir-355   chrII:11833425-11833574    View MI0000754 at mirBase   

Species Fold Score
ce4 UGUUGUCG---CUGUUUGAGAUUAAUAAU--------GUCAAGAAUUGAAUGGUUUGUUUUAGCCUGAGCUAUGAGUCAUCGGAAUAUGCAUAGCUUCUUGCUAAAACAUGCCAAUCAAUCUUAAUUGACGAAGUUUUUGAAACA-GGUAUGUUUUAACUU
cb3 CAUUAUGAAGUCUAUUUGCGAUUACUGAUUAUGAUUAGUCAGCAAUCGGAUGGUUUGUUUUAGCCUGAGCUAUGUGUUAUUG-CAUAUUCAUAGCUACUUGCUAAAACAUACCAAUCGA-GUUGACUGAC--AUUCUUUGUUAUACGGUGAGCU---ACUU
caeRem2 ======================UAUUUAU--------GUCAUUUGUCGAAUGGUUUGUUUUAGCCUGAGCUAUGUGUUAUUG-CACAUACAUAGCUUCUUGUUAAAACAUACCAAUCG--GUUAAAUGAA--CCUUUUUGACCUA-GGUAAG-----GCUU

mir-356   chrIII:7860053-7860202    View MI0000755 at mirBase   

Species Fold Score
ce4 UC---------UUUUAUUAAUAAAC---------AGUU------------------------AAAGUUUCCUUGAGAACAAUGUGGUUGAGCAACGCGAACAAAUCAUCAAUGUAAAUUUCAGCGGAUUCGUUACGACGUGUCUCACCACAUCGUUAGUAGGAU-------U--------------UCAGAACACAUUAAGUAGAAAUCA--AG
cb3 UUG--------AUUUUUUAAUAAAAUUCCGAUUUUUUUUCUUA-------------------AAAUUCCUCAUCCAACCAAUGUGGAUGAGCAACGCGAACAAAUCCU---CUUAUA-----AGAGAUUUGCCACGCCGCCGCUCACCACACUG--GCU------------U--------------UCAGAAGGU----GCCAGGAAUCA--GA
caeRem2 UUG--------UCUUCUUAAUAAAA-----AUUAACUUUUUUAGAGGAAAAGAAAUAAAAUUAAACCGCUUUUGCCAUCGAUGUGGUUGAGCAACGCGAACAAAUCAU---CGAAAAUGAC-UGAGAUUUGCGCCAACGUGGCUCACCACAUCG--AAUUGGAGCGUUGAAU--------------UCAGAAUAU-----UCAGAAGCCACUGC
caePb1 UCACCCCCAACUUUCAUUAAUAAAA-----AC--AGUUUCCAA-------------------AUACAACUC-----AUCAAUGUGGUUGAGCAACGCGAACAAAUCAU--AUUUAUA-----CCAGAUUCGUCACGACGUCGCCCACCACAUUG--AAAAAGAUAGACGAAUAUCCUUCUUGUUAGCCGAAAUAG-----GGAGUAGCGACAAU

mir-357   chrV:8580327-8580476    View MI0000756 at mirBase   

Species Fold Score
ce4 AGUAGUACUU---------------CUGAUAUUUAACGCUGUA-CUAC-UCACCA-GCGGAUCCCUACAACGCUGCGCAUAUGCAUGA----ACACAAUGAAAAUGUAAAUGCCAGUCGUUGCAGGAGUUCGCAUACAGUAGUAAAAUGCGCCCAAACGGAGAACUUUUGU
caeRem2 UAUUCUAUUUUAUUCUACUGCUUCUGAUAUAUUCAACGAUGUG-CUGC-CUAACA-GCGGAUUCCAGUAACUCUGAGCAUAUACAUGAAGUUUCA---AAACAAUGUAAAUGCCAGUCGUUGCUGGAAUUCG--=====================================
caePb1 UAUUCUGCCU----------------------------AUGUGUCUGUACUAACAUGCGAAUCCCUGUAAUACUGUGCAUAUACAUG-----UCAUACAACUAAUGUAAAUGCCAGUCGUUGCAGGAAUUCGCU=====================================

mir-358   chrV:8580643-8580792    View MI0000757 at mirBase   

Species Fold Score
ce4 CCCAAUCAUUCUAUCAAUUCAAACUCGCGACGGCUGGCGACCUGGCCAGGCAUUCCAACUGUCAAACUUACAAAGCUUUCUCGAC-AAUUGGUAUCCCUGUCAAGGUCUCAAUCCGUUCAGCGAAUUCGUUGUUCUAUUCCCUACCAACC
caeRem2 CUCAUUCAUUCUAUCAUUCAAAAUUCACCGCGGAUGGCGACCUGGCCAGGCAUUCCAACUGUCCAUCCAA-GUACUUUAUCGGAC-AAUUGGUAUCCCUGUCAAGGUCUCAAUCCUCUCGGCGAG------===================
caePb1 AUCAA=================================================================-CUAUCCUCUCCCACUAAUUGACAUCUCCAUCU---------UCUUGUCGUCGGACCCGUUAUCCUCUUCC--ACUAAUU

mir-359   chrX:3004262-3004411    View MI0000758 at mirBase   

Species Fold Score
ce4 UUUCUACAGUACUGAUAUUAAUGCUCCUUGAAA--------------------UUUCAAUCGUUAGAGUAACACACAGUUACACGACCUCAUCAAUCGUGUCACUGGUCUUUCUCUGACGAAUUGAAGUUCUG--GAG--ACAAUUUUGGUUGUU-------------GAAAAGGCUGAGUUGAGA
cb3 GAUUUUUUUCUCUAGACGAU-UCUUCCAAGAUAAGUUACAAAUCUAGACAAAUCUUCAUCCGUCAGAGCAUAUCUCAGUUACACAACUUCCUAAAUAGUGUCACUGGUUAUCCUCUGUCGAAAUGAAGAUGUCAAAAG---UAGCUGUUUUUUUCAGUUUCAAAAAAAAAAAAGAAAUCGGUGAGU
caeRem2 --UUUGUUGCACCAAACUAUAAUUUUCGCAAAAGACUAAUGGCCUCGAUAAA-CUUCAUUGGUCAGAGCAACACGCAGUCACAUAAGUUUCUGAAAUGUGUCACUGGUUUUCCUCUGACUAAUUGAAGAUAUC--GAG---UAAAUUUUUUUGU--------------ACAAAGA------UAAGU
caePb1 AAGCCAUGGCUAAAACAUUUGUAUUCUGAAAAAAAACUCAAAUC---------GUUCGAUUGUCAGAGCAAUCCUCAGUAACACGUACUCAUUAUUUGUGUCACUGGUUUUCUUCUGACGAAUCGAAAUGCUC--GAGUUCUGGUUUGUUUUGC--------------GAGAAAA------UGAAU

mir-36   chrII:11537602-11537738    View MI0000007 at mirBase   

Species Fold Score
ce4 CGAUCUUUUCCACU---UGCUCCACCGCUGUCGGGGAACCGCGCCAAUUUUCGCUUCAGUGCUAGACCAUC----CAAAGUGUCUAUCACCGGGUGAAAAUUCGCAUGGGUCCCCGACGCGGAAAGAUAAAAUAUCUUAAAAU
cb3 CAGCCAUUUCCGGUUGAUGUUCCAUUCCUG---------------------------------------------UUCAAUCCUUAUCCUCACUUUCCCCUCUCCAAA--------------------AAACCAUUCCA----
caeRem2 UAGGCUCUUCUGGU--AUCUUCAAACCCUG-CCCGUAACCUAGUUGAUGUUCAUCGCAGUGAUAUGACGCAUCAGUACAUUCCUUAUCACCGGGUGUACAUCAGCUAGGGU================================
caePb1 CGGUCCUUUCUUCU---UCUUUAAUUGCGU-AGGGGAACCAAGCUAGUUCUUACCGCGGUGCUACAACAAG----CAUAACAUCUAACACCGGGUAAAAACUAGCUCGGGU------------------------CCCC----

mir-360   chrX:5919087-5919236    View MI0000759 at mirBase   

Species Fold Score
ce4 UUUCUUAUUGA----UUAUUCGGCAU----------UCUGUUAGGAAG--CAUCAAUGUGUUGUGACCGUUGUUACGGUCAAUUUGCAAAUUGAAAAAAUGACCGUAAUCCCGUUCACAAUACAUUGUUCGUUU--------------------UCUCCAAAG-----GUGAUUCAUUAAGUAAAAAGGG
cb3 CUU-UUAUUCA----UUUUUCAAAAUGUUUUGAAUAUUCCAUAAAAAAGCGCCUAGGGUUUUGUGACCGUUGUUACGGUCAAUUC-AUGUCUGACACAAUGACCGUAAUCCCGUUCACAACACCUUGUGUGGCU-UGAAUAAUGAAAUUGUAUAUGUGAAAAGGUUGAGUGACUCAUUUGCUAAAAAGGA
caeRem2 UAU-UUCUUAG---CUUCCUUCUAAUUUUUCGAGAAAUUGUCAAAAAGGCGAUCAGGGUUUUGUGACCGUUGUUACGGUCAAUUU-CAUUCAGAAGCUAUGACCGUAAUCCCGUUCACAACAUCUUGUUUAGCU-UGACUCAUGAA-------UUGUGUAAAGGUGGCGUGAUUCAUUUGCUAAAAAGGA
caePb1 UUU-UUAUCCCAUCUUAUUCCAGAAUAUGCUAUAUAUUUCUUGAACGG--CAUCAAGGUUUUGUGACCGUUGUUACGGUC-AUUU-CAACAUGUAAC--UGACCGUAAUCCCGUUCACAACACAUUGUUUGUCGAUUCGUCAUGAA-------AUGU-CAAAGGUGAGGUGAUUCAUUUUCUAAAAAGGA

mir-37   chrII:11537722-11537859    View MI0000008 at mirBase   

Species Fold Score
ce4 UAAAAUAUCUUAAAAUCGAUUCUAGAAA------------CCCUUGGACCAGUGUGGGUGUCCGUUGCGGUGCUACAUU----CUCUAAUCUGUAUCACCGGGUGAACACUUGCAGUGGUCCUCGUGG--------UUUCUCUGUG--------------------AGC-CAGGUCCUGUUC
cb3 -AAACCAUUCCA---------AUUGAAA------------CCUUCGGACCAUUGUGAAUUUUUGCUGCGGUGUUACAAC-----UAACAUCUGUAUCACCGGGUGAAAAUUCGCAAUGGUCCG-AUGG-------------GUAUU-------------CAUGUGGAGC-CUGGACCUGUAC
caeRem2 ========================================CCCCAUGACCUUGGUAGUUUUCCGCCGCAGUGAUAUACCAUCAAUCAAAACGAUAUCACCGGGUGAAAAACUACCAAGGUCGG-GUCACCUGUCCUUUUUUCUAUUCUUCCCCUUCUUCCCUGUCUAGCUUUGGACGUUCGC
caePb1 --------CCCC---------CUUGCAACAUUUUCUCUUCCCUUCUCCCCUUU----AUUCUGGCUACUUGAACAAAAU-------------------CCAUUUGAAA-----------UCGA-UUGA--------UUGGUCUAUU----------UCGUUUCCAGAGC-CAGGACCUGUUC

mir-38   chrII:11537819-11537956    View MI0000009 at mirBase   

Species Fold Score
ce4 CAGUGGUCCUCGUGG--------UUUCUCUGUG--------------------AGC-CAGGUCCUGUUCCGGUUUUUUCCGUGGUGAUAACGCAUCCAA----AAGUCUCUAUCACCGGGAGAAAAACUGGAGUAGGACCUGUGACUCAUUCCGAU-----UUCUGGAGU-UUUCC
cb3 CAAUGGUCCG-AUGG-------------GUAUU-------------CAUGUGGAGC-CUGGACCUGUACGGGUUCUCUUUGUGGUGAUAUGACAACUCAUAACCAUUCCUUAUCACCGGGAGACAACCUGGUAUAGGUCCAGCGACUC-UGCUGGAUGGUCCCGUUGCCCACCCCC
caeRem2 CCAAGGUCGG-GUCACCUGUCCUUUUUUCUAUUCUUCCCCUUCUUCCCUGUCUAGCUUUGGACGUUCGCGGUUUAACUUCGUGGUGAUAUGACACAUAUUA--CAUUCUUUAUCACCGGGAGUAAAACUGGUAUAGGAUCUGCGACUC--GCUGAUUGGAAAUCUGGAGUGGCUCC
caePb1 ------UCGA-UUGA--------UUGGUCUAUU----------UCGUUUCCAGAGC-CAGGACCUGUUCAGUUUUUUUCCGCGGUAAUAACGCGAG-------CAAGUCCUAUCACCGGGAGAAAAACUGGAGUAGGUCCUGCGACUC-UACAAGG-----AUGUUCAGUAGUCUU

mir-39   chrII:11537978-11538104    View MI0000010 at mirBase   

Species Fold Score
ce4 C----------UGAUUAUU-GAAUU--CCUGAUAUACCGAGAGCCCAGCUGAUUUCGUCU-UGGUAAUAAGCU-CGUC-AUUGAGAUUAUCACCGGGUGUAAAUCAGCUUGGCUCU---GGUGUCUCCGAACCUCCUGUCCGCAC
cb3 U--UACUAU--CUACUACU-AUAUU--CCAGAGAUGCAGGGAGCCCAACUGGUUCUCACUGCAGUGAUAAGCUAUGUU-AC--AGUCUAUCACCGGGUGAAAAACGGUUAGGCUCUUUAAGCAUCUCUGUAUCCCCUGCCCUCAC
caeRem2 UUCUAUUAUUCCAACUACUAAUAUU--UCUGAGAUCCAGAGAGCCCAACUGUUUCUUUCCCCGGUAAUAAACUUCAAC-AC---GACUAUCACCGGGUAUGAAUCAGUUAGGCUCUUCUGGUAUCUUCAAA--CCCUGCCCGUAA
caePb1 UUCUG------CUACUACU-AUAUUGGCAAGAAGUCCCCAGGGCCUAGCUGAUUUCAACCACGGUAAUAAGCUCCAUAGAU--AGCCUAUCACCGGGUGGAAAUCAGUUAGGGCCUUCUGG------------------------

mir-392   chrX:13597131-13597280    View MI0000819 at mirBase   

Species Fold Score
ce4 UCAAAA--------------UUUAUUCUGGAUAUU-----------------------UUUGAAAAUCUCGCAGACGUGUUCAGUCAGCAUUCGUGGUUGAGGAUAUCGAACACAAAAAAAGAUAUCAUCGAUCACGUGUGAUGACAGAUUUUCUGCGACUAACAGGUUUGCUUAAUAAAAGUUAC
cb3 UUAAAAAGGAACUGCAUCACCAUAUUUUGGAUAUUCUUCUAAAUAUUGAUUAUUAUCUUUUUAAAAUCCUGCAU---UUAUCUGACAUCUCACAUUAUUGAGGAUAUAAACUAAAUAAAGAAAUAUCAUCGAUCAUGUGAGCUGUUAGAUUAUC================================
caeRem2 ================================================================================UCUGGCGGUUUACAUGGUAGAAGAUAUCAGUAUAAAAAAUAGAUAUCAUCGAUCAUGUAUGCUGUCAGAUU---================================

mir-40   chrII:11538073-11538204    View MI0000011 at mirBase   

Species Fold Score
ce4 GCUCU---GGUGUCUCCGAACCUCCUGUCCGCACCUCAGUGGAUGUAUGCCAUGAUGAUAAGAUA---UCAGAAA---UCCUAUCACCGGGUGUACAUCAGCUAAGGUGCGGGUACAGGUGCAU------------------------UUGAUAUCAAGGUGAG-----
cb3 GCUCUUUAAGCAUCUCUGUAUCCCCUGCCCUCACCCCAGCGGGUUUUCAUCGCAGUGAUAUGACGCAUUCAAACCAUUUCUUAUCACCGGGUGUCAAUCAGCUAGGGUGUGGGCGCGGGUAUCCACAGAGGUAAGUUUAUCGCGGAUCUCUCUGGCCUUGGAGG-----
caeRem2 GCUCUUCUGGUAUCUUCAAA--CCCUGCCCGUAACCUAGUUGAUGUUCAUCGCAGUGAUAUGACGCA-UCAGUACAUUCCUUAUCACCGGGUGUACAUCAGCUAGGGUGCGGGUUCAGGU----------------------------UCUUUAUCAUUGAAAG-----
caePb1 GGCCUUCUGG------------------------------------------------------------------------------------------GCU---------------------------------------------UCACUAUCUUUGGAAGGUGAG

mir-41   chrII:11538197-11538333    View MI0000012 at mirBase   

Species Fold Score
ce4 AGGUGAG-----UUAUUUUUAAGUGGGUCCCAGAGACCUUGGUGGUUUUUCUCUGCAGUGAUA--GAUACUUCUAACAACU--CGCUAUCACCGGGUGAAAAAUCACCUAGGUCUGGAGCC------UCCUGCUCUUUUUUUGCUGUUUUU--------
cb3 UUGGAGG-----UGAA-----AGCAGGUCCCAAAUGCCUUGGUGGUUUUUCGCCGUAGUGAUA--CAACAUCGAAGCCAUA--CGAUAUCACCGGGUGAAAAACUCCCAAGGUC-GGGACA------UUUUUAUUUGUUCUUGUCGUUGUCCCUUAGUC
caeRem2 UUGAAAG-----UAAGUUU--AACAGGUCCCCAUGACCUUGGUAGUUUUCCGCCGCAGUGAUA--UACCAUC-AAUCAAAA--CGAUAUCACCGGGUGAAAAACUACCAAGGUC-GGGUCACCUGUCCUUUUUUCUAUUCUUCCCCUUCUUCCCU-GUC
caePb1 UUGGAAGGUGAG----UUU--AGCAGGUCUU-GUGACCUCGGUGGUUUCUUGCCGCGGUGAUAUGCACAUUCACUUCCAUAAUUGAUAUCACCGGGUGAAAAAUCACCAAGGUC--GACGA------UUCUGUUCUAUUUUU-------UCUCGCAGCA

mir-42   chrII:11889700-11889834    View MI0000013 at mirBase   

Species Fold Score
ce4 CUAAAAUCCCCAUAAACCCUUCGCGGACCUUUGUGGGUGUUUGCUUUUUCGGUGAAGUU-GUCUUCCGUAGCUUCUUCUUCACCGGGUUAACAUCUACAGAGGUCCAAAAAGGGGUAACUAUUGGCA----CUAG------------------------------------------------UCGC
cb3 C----CUAU-----AACCCUUGUCGGACCUUUGUGGGUGUUCGCCUUUUCGGUGAAGUU-----ACUGAAU--GCUUCUUCACCGGGUUAACAUCUACAGAGGUCCUAAAGGGUUCCAUGACCCAUGACCCCUAGAAUUUCAAAUAAAUUAGGUUAUUCGAAAACAUAAGAAAAGAGGCGAUUCUGC
caeRem2 CU---UUAUUCCCAAACCCUUGUCGGACCUUUGUGGAUGUUUCCUUUUUCGGUGAAGUUGUUCCGUUGAAUUAUCUUCUUCACCGGGUUAACAUCUACAGAGGUCCUCGAGGGUUUCUUUGCCCAAA----CGAGAA------------------AUUAGAAAA---GAAAAAAGAGGCGAUUCUGC
caePb1 GG--AUUCUCCCUCAACCCUUGUCGGACCUUUGUGGAUGUUUGCCUUUUCGGUGAAGUU------UCAAAAGAUAUUCUUCACCGGGUUAACAUCUACAGAGGUCCUGAAGGGUUUCUUUGUAAGAAAU--CGAAAAGAAGAAA-----------AAGAGCAGA---AUGAAAAGUGGUGUCACUGC

mir-43   chrII:11889799-11889936    View MI0000014 at mirBase   

Species Fold Score
ce4 AGGUCCAAAAAGGGGUAACUAUUGGCA----CUAG------------------------------------------------UCGCCCGUGACAUCAAGAAACUAGUGA-UUAUGCC----AAACC---ACAGGGACAUAUCACAGUUUACUUGCUGUCGCGGGCGG--------UGCUGAGU----------------------------UUAAGGCCU-----------CUGAAAAGAGAA
cb3 AGGUCCUAAAGGGUUCCAUGACCCAUGACCCCUAGAAUUUCAAAUAAAUUAGGUUAUUCGAAAACAUAAGAAAAGAGGCGAUUCUGCCCGUGACAUCAAGAUGCUUGUGA-UUAUGC----GAAAAU---GUUGGGACAUAUCACAGUUUACUUGCUGUCGCAGGCGGAUUAUUGCUAUUGCUCAUUUUGUGAUUGUUUGAAGAAA------AGAAGGCUCAUGGAAGAG--AAAAGAAGAGAG
caeRem2 AGGUCCUCGAGGGUUUCUUUGCCCAAA----CGAGAA------------------AUUAGAAAA---GAAAAAAGAGGCGAUUCUGCCCGUGACAACAAGAAACUUGUGA-UUAUGCC-UAGAGAAUGAAGAAGGGACAUAUCACAGUUUACUUGCUGUCGCAGGCGG--------UGUCAUCUGAAUUGUAGGUAUUCUCAGAGAGUAGGUAAGAGGCCGGAAGAAGAGUUAGAGAGUGAGAG
caePb1 AGGUCCUGAAGGGUUUCUUUGUAAGAAAU--CGAAAAGAAGAAA-----------AAGAGCAGA---AUGAAAAGUGGUGUCACUGCCCGUGAUAUCAAGGAACUUGUGAUUUAUGCCAUAACUAACAUAACCUCGACAUAUCACAGUUUACUUGCUGUCGCAGGCAG----GUGUUACUGAAAAGUCUCGGGUUGAUUCGAGUAA------GUUAGGCC------AAGG--AGACGAAGAGAG

mir-44   chrII:11889912-11890047    View MI0000015 at mirBase   

Species Fold Score
ce4 AGU----------------------------UUAAGGCCU-----------CUGAAAAGAGAAAAUGGCCAAUCUGGAUGUGCUCGUUGGUCAUAGACG-UCAACA---CGAACUGUUCAUAUGACUAGAGACACAUUCAGCUUGGCCUGCUUCUCUAGUUUUGAAUUUUUCAA----CAGU
cb3 CUCAUUUUGUGAUUGUUUGAAGAAA------AGAAGGCUCAUGGAAGAG--AAAAGAAGAGAGAAGGGCCGAUCUGGAUGUGCUCGUUAGUCAUAGACGAAUCACACUUGAAA--GGUCAUAUGACUAGAGACACAUUCAGCUUGGCCUGGAUCUCAACGUUUGAGAUUGAAAGAUUGCUGG
caeRem2 UCUGAAUUGUAGGUAUUCUCAGAGAGUAGGUAAGAGGCCGGAAGAAGAGUUAGAGAGUGAGAGAAUGGCCGAUCUGGAUGUGCUCGUUAGUCAUAGACGAAUCACA---GAAAACAGUCAUAUGACUAGAGACACAUUCAGCUUGGCCUGGAUCUCAAAUU-----================
caePb1 AAAAGUCUCGGGUUGAUUCGAGUAA------GUUAGGCC------AAGG--AGACGAAGAGAGAAUGGCCGAUCUGGAUGUGCUCGUUAGUCAUAGACGAUACACA---GAGAACGGUCAUAUGACUAGAGACACAUUCAGCUUGGCCUGGAUCUCAGAAUUUGAG================

mir-45   chrII:11880833-11880968    View MI0000016 at mirBase   

Species Fold Score
ce4 CCAGUAUUCAGCUGCU---------------------------------------------CAUGCACCA--------------------------------------UGUGCCACGCUGGAUGUGCUCGUUAGUCAUAAUAUCCUCCACAAAGCAAGGACUAUGACUAGAGACACAUUCAGCUUGGCGCCGA---AUGCAUUUUAUUUUUAAAUUUUAUC
cb3 AGAAGAUUCUUCUUCU-----------------------------------UUAAUUCUA-UUUAUUUUGUUAUUAUACGGUAAGCUUU---------UCUGCUAAACAGUGCCACGCUGGAUGUGUUCGUUAGUCAUAGUAACCUC-AUCAAUUCAGGCUUAUGACUAGAGACACAUUCAGCUUGGCGCCAAACUAUGCAGAACUUUUUUCUCUUUAAUU
caeRem2 AAUAUAUUCAUCAUGU--------------------------------------AUUCUAACUUAUUCUG-------ACGGUAGGUUUUAUCUGAAACUGUACCAAAACGUGCCACGCUGGAUGUGCUCGUUAGUCAUAAUAACCUC-AUUUAGUAAGGCUUAUGACUAGAGACACAUUCAGCUUGGCGCCGAACUAUAAACAGUAUUUUUCUUCUU--UU
caePb1 AGAAGUUUCUUAUUCUGAAAACGAAAUGAUACUCGAUCUUCUAACAAGUAUUCAGUACUA-CCUAUACUA-------AUGGUACAGUUA-CCUAAUACUGUUCGGGAAACUGCCACGCUGGAUGUGCUCGUUAGUCAUAGUAGCCU--AUCCUGAACGGCCUAUGACUAGAGACACAUUCAGCUUGGCUCCGA--UAUCAAUUACAGUUUUUUUUUUCGUC

mir-46   chrIII:13660375-13660511    View MI0000017 at mirBase   

Species Fold Score
ce4 AAGGUAAGGGUC--------CAAACUGCUGAGGUGAAGCUGAAGAGAGCCGUCUAUUGACAGUUCAAGACCACGAGUCGUUGUGUGCUGUCAUGGAGUCGCUCUCUUCAGAUGAUCCGGUCAAUGGUAUUUUGUUUU-----AAUAUAA
cb3 UUGGUAAGUU----------GAAGAGAUACAAGUGAAGCUGAAGAGAGCCGUCUAUUGACAGUUCGCUUGU-------UUCAUGUGCUGUCAUGGAGUCGCUCUCUUCAGAUGAUCUGA--AUCUAAAUGUUAUAUU-----=======
caeRem2 CAAGUAAGUUU---UCAACCGAAUAAGAGGAGGUAAAGCUGAAGAGAGCCGUCUAUUGACAGUUCGUUUCUAU----ACUUAUGUACUGUCAUGGAGUCGCUCUCUUCAGAUGAUCC-----UUUCAAGGUUUUUAUCUUUU=======
caePb1 CAGGUAAGUUUCUCUCAA--AAACCGACUUGAGUGAAGCUGAAGAGAGCCGUCUAUUGACAGUUCGUCUCUGU--UCAGUCAGGUACUGUCAUGGAGUCGCUCUCUUCAGAUGAUCU----CUUGCCAUUUUUUAUU-----=======

mir-47   chrX:13921152-13921288    View MI0000018 at mirBase   

Species Fold Score
ce4 CCGACAAGGUUAGUU--GAUCGAGAGCCGACUGAAACUGAAGAGAGCAGUCUAUUGACAGUCGGUUACUCGAAAUCUUUACUGUCAUGGAGGCGCUCUCUUCAGAUGAUGUCUGGCCCAUUUUUUAAUCAAUUUUGAA
cb3 --------GUAAGUUUAAAUUAAUAGCUGAGGAAGACUGAAGGGAGCUUUCUUUUGACAGUUCG--AUUUCGAACUCUUACUGUCAUGGAGGCGCUCUCUUCAGGUGAACUCUGGCUCUUUUUUU=============
caeRem2 --UAUAAGGUAAGUUUCGA-AAAAAGCCGAGUGAGACUGAAGAGAGCAUUCUGUUGACAGUUCG--AUUCCGAACUCCUACUGUCAUGGAGGCGCUCUCUUCAGGUGAUCUCUGGCUAGUUUUU-=============
caePb1 UUUGGAAGGUGAGUCUUGUUGAUGUGCCGAGAGAAGCUGAAGGGAGCUUUCUGGUGACAGUUCG--AUUUUGAACUCUUACUGUCAUGGAGGCGCUCUCUUCAGAUGAUCUUUGGCUGCUUUUUU=============

mir-48   chrV:14364199-14364336    View MI0000019 at mirBase   

Species Fold Score
ce4 GUAAGUCAAUUAACCAAUUGAA-ACUCCCGGGAACUUGAGGUAGGCUCAGUAGAUGCGAAUUGA-----------ACGGUAUCU-CACAUCCACCAGCCUAGCUCGCAUUCCCAGAGUUUACGGUAUUGUUUUAUUAUUAUGUUUCAUUC
cb3 GUAAGU----------UUAGAA-CCAUUCGGGAUGUUGAGGUAGGCUCAGUAGAUGCGAGGAGA--------UCCACCAUUCCU-CACAUCGUCUGUCCUAACUCGCCUUCCC=====================================
caeRem2 GUAAGUAAUUU--CCUUCAAAU-CCAUACCGGAUGUUGAGGUAGGCUCAGUAGAUGCGAUCAGAGUUGUGCCUCAGGCGUUCCU-CACAUCUUCUUGCCUAACUCGCCUUCC-=====================================
caePb1 GUAAGC----------UCAAAAGACAUGAGAGAAGUUGAGGUAGGCUCAGUAGAUGCGAACGUAAAUGAGCCCACAUCGGCCUUUCACAUCCACUUGCCUUCCUCGCCUUUCCAAA-----------UGUUUCACUUUUUAAUUUCUAUU

mir-49   chrX:9989194-9989330    View MI0000020 at mirBase   

Species Fold Score
ce4 UAUUCAGAUGCUAGUGUACU----------------------UUUGAAAAAGACCACC-GUCCGCAG-UUUGUUGUGAUGUGCUCCAAGCAAUCAU-GAGUCUGAAGCACCACGAGAAGCUGCAGAUGGAGGUUCUGAUU------UUCGAACGAGUUCA--GACAAGU
cb3 UCUAUUCAUAUCUAUUUAUUGGAACCUAUUUGAA---------CCGAAACCAUUUGCC-AUCCGCAG-UUUUUUGUAGUGUGCUCCGCGCCAUCUUAGUGCCCGAAGCACCACGAGAAGCUGCAGAUGGAAGUUUUGGUU----------===================
caeRem2 UCCUUGCCUAAUUAUGUAUU-----CUUUUGGUAAG------UUUAGAACAAUCUACCGAUCCGCAG-UUUCUUAUGAUGUGCUCCGAGCCAACAU-GUGUUCGAAGCACCACGAGAAGCUGCAGAUGGAGGAGUUUGUUCCAUUUUGCAAAAAACUCUAAUGUUGAAU
caePb1 UUUCUUCCCAGUUAUCUCAA-----AGUUUGAAGAGGUGAGUUUAGAAACAGUUGGCC-GUCCGCGGUUUUUUUGUGUAGUGCUCCGCACCAUCGA-GUGUUCGAAGCACCACGAGAAGCUGCAGAUGGAGAAGCUUGUU------UCCG===================

mir-50   chrI:1738616-1738754    View MI0000021 at mirBase   

Species Fold Score
ce4 AAUUCUAUAUUCUGUAUUCCU---GCCCGCCGGCCGCUGAUAUGUCUGGUAUUCUUGGGUUUGAACUUCCAGCGUUG--------------AACCCGCAUAUUAGACGUAUCGACGGCCGGCG-GGGCAGGUAAUGGC---------U--------------GGUAAGUUUGGAGAGAC
cb3 AUACUUAUAAUCAGUAUUCCUUCCACCCACCGGCCGCUGAUAUGUCUGAUAUUCUUGGGUU-----------AUCUGAUAAUGAUUGUUGUAACUCAAGUAUUAGACGUAUCGACGGCCGGCU-GGGUUGG----------------================================
caeRem2 --------------UAUUCCACCCACCCCCUGGCCGCUGAUAUGUCUGGUAUUCUUGGGUUCG------AUACUCUGAAAAACG-------AACCAAAGUAGCAGACGUAUCGACGGCCGGGA-GGGUGGG-AAUUUAUGCUAUGGC================================
caePb1 --------------UUUCCCUCUCACCCACCGGCCGCUGAUAUGUCUGGUAUUCUUGGGUUCA--UUCCUUACUCUG--------------AACCAGUUUAUUAGACGUAUCGACGGCCGGAUCGGGUGAG-AAUUUC---------UAUACUUCUUUGCGAGGUAAGUCUCUUCUAGG

mir-51   chrIV:11025963-11026102    View MI0000022 at mirBase   

Species Fold Score
ce4 ----CAACAUUUGCCUGCUCACUUGU-------------CCGAAAA-GUCCGUCUACCCGUAGCUCCUAUCCAUGUUACUGGUCAAAA-AGUGAACAUGGAAGCAGGUACAGGUGCACGGCGAGUAGGGUCAUGAAG-----CUGGGGCUCUGGG---------------AGCAAACA
cb3 ----CUUCGCUCGUCAUCGAAUCUCAACGUCAAACGGAUCCGAAGACGUCCAUCUACCCGUAGCUCCUUGCCAUGUUACUGGUAAA---AGUGAACAUGGAAGUUGGUCCGGGUACAUGGCCAGUAGGAUUAUGAAGACGUGUUGAGGUUUCAAGAUUCAGUGAAAGAGCUGUCACCA
caeRem2 CUUCCAUCGCUCGCCAAACUAUCUCG----CGAAUCGACCCGAAGACGUCCGUCUACCCGUAGCUCCUAUCCAUGUUACUAGCAGAUAGAGUGAACAUGGAAGUUGGUACAGGUGUACGGCCAGUAGGACUCUUGAG---UGUCGAGUAGUUGGG--UCAGGAAAGAAGCGAUGAAUA
caePb1 ----CAACCAUCAUCAACCAAGUUCU------GUUCUAUCCGAAGUAG-CCGUCUACCCGUAGCUCCUAUCCAUGUUGUUAUCAAAGA-AGUCAACAUGGAAGUUGGUACCGGUGCAUGGACAGUAGGA==========================================ACAGAUA

mir-52   chrIV:14033956-14034095    View MI0000023 at mirBase   

Species Fold Score
ce4 CUAUACAUAUUCAUGUUCUUCCAACUCUAACAGUCCACCCGUACAUAUGUUUCCGUGCUUGACAGCGAAGCUCAAUCACGUUACAAUGAAAGGGUAGCCGGUUAUUGA-------AGUUGGGUCUUUUUUGGGCGAAUUAUGAAAU
cb3 ---------UUC-----UUUCCCGCUCUGACAGUCCACCCGUACAUAUGUUUCCGUGCUUGACAUAG-AGCUCAAUCACGAUACAAUGAGCGGGUAGCCGGUCAUCGAGUCGGAACAUUGGUUCCCA--UUUAUCUAUUAUACUUU
caeRem2 -------UAUUC-----UUACCCUCUACUACCGUCCACCCGUACAUAUGUUUCCGUGCUUGACAUUG-UGCUCAAUCACGUUACAAUAUAUGGGUCGCCGGUCUUAGG----------CGGUUCUUAAUCUUAAUCAAUACAAUUU
caePb1 ------GUAUUC-----UUUUCGGCUCUGACAGUCCACCCGUACAUAUGUUUCCGUGCUUGACAAUG-AGUUCAAUCACGUCACAAUUUAUGGGUCGCCGGUCAUUGAGUUGAACAUUUGAACCAGA------UCUAAUACACUUU

mir-53   chrIV:11027543-11027681    View MI0000024 at mirBase   

Species Fold Score
ce4 UCUAUUAUUAU----------AAAUUUCUCCCGAUUCUGACAGUCCACCCGUACAUUUGUUUCCGUGCUUGACUUCAAAGCUCAAUCACGGCACAAUAUAUGGGUCGCCAGUCAUUGUAGUCGGAAUUUUUUUCAGUUUUCCAGGAAA
cb3 ACUACUCUUAU------UCU-----UCUUUCCCGCUCUGACAGUCCACCCGUACAUAUGUUUCCGUGCUUGACAU-AGAGCUCAAUCACGAUACAAUGAGCGGGUAGCCGGUCAUCG-AGUCGGAACAUU==================
caeRem2 ACUAUUCUUCU------GCUA---UUCUUACCCUCUACUACCGUCCACCCGUACAUAUGUUUCCGUGCUUGACAU-UGUGCUCAAUCACGUUACAAUAUAUGGGUCGCCGGUC-----------------==================
caePb1 ACUAUUCUUCUCUAUUGGCUAGUAUUCUUUUCGGCUCUGACAGUCCACCCGUACAUAUGUUUCCGUGCUUGACAA-UGAGUUCAAUCACGUCACAAUUUAUGGGUCGCCGGUCAUUG-AGUUGAACAUUU==================

mir-54   chrX:13144896-13145034    View MI0000025 at mirBase   

Species Fold Score
ce4 UAAUC-UCUGGAAUUGGUAAUGUGAGUCGCGCUCUGACUAGGAUAUGAGACGACGAGAACAUUGCUUUUUUAAAAGACUUGUACCCGUAAUCUUCAUAAUCCGAGUCAGGGCUAGCUGACCAUAAAC-------------------AUGCCUUCC-AGU
cb3 UAUUCUUCAGGACGUCUAAGC------CGAUCCUUGGCUGGGAUAUGAGCAAACGUGUACACGAUACUUAUUCC----CUGUACCCGUAUUCU-CAUA-UCUGAGCCAAGGAUCGUCG-CAAAAGGCGGUGCUUCCUGAUUUAUUUAUUCCUACCGUAU
caeRem2 UAUUCCUCAGGAAGUUGAAGUGCAAGACGAGCCCUGACUGGGAUAUGAAAUCACGUGAACAGCGUUCUGAGUACAUGUCUGUACCCGUAAUCUUCAUAAUCCAAGCCAGGGUUCGCCG-CUGAAAGC-------------------AUUCCUUCCGUGU
caePb1 UAUUCUUAAGGAAGUUGA-GUGUAGG-CGAGCCCUGACUGGGAUAUGAGAGGACGAGUACAUUGAAUUCAACCAUUACUUGUACCCGUAAUCUUCAUAAUCCGAGCCAGGGGGAGCCG-UGGGUA-C-------------------ACUCCUUCC---U

mir-55   chrX:13144727-13144864    View MI0000026 at mirBase   

Species Fold Score
ce4 GCUUAU-----------------------------------------------------------------------------------UGCGAAGCAUGU-----------------------CUAGAUUUGGAACUUAA-----UGGGACUCGGCAGAAACCUAUCGGUUAUACUUUUUGG--AUAUGCUAUACCCGUAUAAGUUUCUGCUGAGCCCCUUAUUCCUGUUUGGCGCUUCAAGCUAU---CUA
cb3 GCUGAUCUUUGACUCGAACCUGGACAUCGUUUUGUACACGAAGUCAAGCUGCUGUACCCGUGAUUCCAUGUAUCGAGUCAACGAUCGCCUUUAAAA-AUGUGCUUCUUUCUGAUCUAGUCCGCGCCAAAAUUGAAUCGUCACAAAGGGGGACUCGGCGGAAAAUAUGGUGGUAUACUACACAGUGAAUAGAUAUACCCGUAUAUUUUUCUGCCGAGCCCC=================================
caeRem2 --UGAU-----------------------------------------------------------------------------------UGUGAAA-GAGU-----------------------CCAGACUCGGAAAGUCGCA---UGGGACUCGGCAGAAGCACUUGGGGUAUACUUCACAG--AGUAACUAUACCCGUAUUUGUUUCUGCUGAGCCCCUGACACCAGUUCGGUACUUCUUAUCAUGAUCUG
caePb1 --GUAU-----------------------------------------------------------------------------------UCCAAGA-AUUG-----------------------CCAGGUUUGG-UAGUCGC----UGGGACUAGGCGGAAGUAUAGAGGGUAUACUUCAUCA--AGUAACUAUACCCGUAUAUAUUUCUGCUUAGCCCCUGACACCAUCUUGGCCUUUCUUGCUAU---CUA

mir-56   chrX:13144591-13144727    View MI0000027 at mirBase   

Species Fold Score
ce4 ACAGU------AGGUGAGUUGGAACGGAGC--CAGUGUCUGUUCUUGGCGGAUCCAUUUUGGGUUGUACCUCAUCCUAAA--UUUGACGGUACCCGUAAUGUUUCCGCUGAGAACCGACUGUGCACCACUUU----------GCCCAUUGGAUACC
cb3 =====------CGGUACGUUGGAACGGAACAUCAGUUUCUGUUCUCAGGGGAUCCAGUUCCGGUUGUGCCUCAUCUCAAUACCCAGAUGGCACCCGUAUUGCUUCCUCUGAGAAUCGACUGCGUACCGC-------------AUUCAG------UC
caeRem2 =====------AGGUGAGUUGGAACGGAAU-UCAGUUUCUGUUCUUGGCGAAUCCA-UUCCGGGUGUACCUCACAGCAAU--CCUGACGGUACCCGUAAUGCUUCCGCUGAGAACCGACUGU-UACCACCAUGGCUUCUUCGAUUCC-------UC
caePb1 U----AUUCCAUGGUAGGUUGGAACAGGAG-ACAGUUUCUGUUCUCGGCCGAUACA-UUUCUGGUGUACCUCAAA-------ACUGAUGGUACCCGUAAUGUUUCCGCCGAGAACCGACUGC--------------------GCUCAU------UU

mir-57   chrII:7850402-7850540    View MI0000028 at mirBase   

Species Fold Score
ce4 UC-AAAAAGGUAUGUGAACUCAUCGA---CAUGCUCGUCUACCCUGUAGAUCGAGCUGUGUGUUUGAAA-CAAU-CAUACACGAGCUAGACUACAAGGUGCACGAACAAACCGA--AGAUUUAUGAAUAUGAAGAU--UUAAAUAAUU
cb3 GAUCAAGGUCAGUUUGUGUAUUCGCU--CUGAGUUCGUCUACCCUGUAGAUCGAGCUGUGUGUUCUGAA-GUAU-CAUACACGAGCUAGACUACUAGGUGAACGAUGGAAUGGA--GCAAUUUCUAGUUUGAAAGUUUUUAAACAGAU
caeRem2 GG-AAACGUAAGUUUGAAUAUCUCAUGACUGUUUUCGUCUACCCUGUAGAUCGAGCUGUGUGUUUUGAA-GUGUUCAUACACAAGCUAGACUGCAAGGUGAACGACAAAAUGAG--AGAGCUUCU-UUAUGUA-----UUAAGCAGAU
caePb1 UG-UAAGGUGAGUUUUCAAGUCUCCG---UUUGUUCGUCUACCCUGUAGAUAGAGCUGUGUGUUUGGAAUAUAC-CGUACACAAGCUAGACUACAAGGUGAACGACUUA-UGAGCUUUAAUUUUAGUUUUGAAAGUCAGAGAGAAGAU

mir-58   chrIV:3233230-3233366    View MI0000029 at mirBase   

Species Fold Score
ce4 U--CUCGAC-CUAUCCC--CCGAUGCUCGUCAUAUCCAUUGCCCUACUCUUCGCAUCUCAUCACUUCGUCCAAUA-----------CCAUAGGGAUGAGAUCGUUCAGUACGGCAAUGGACUGAGCUAGAG----------UGACCUCUGAUAAUACG--GAAC
cb3 CCUUCCGAUGCGAACCCGUUUGAUGCUCGCCAUAUCCAUUGCCCUACUAUUCGCAUCUCAUCA----CUCCAGUAUAUAUAUAUAUAUAUAAGGAUGAGAUCGUUCAGUACGGCAAUGGAAAGAGCUAAACGACGGUUGUUUGGCCU----------GAUAUUC
caeRem2 C--UCAGACCUUACCCCGUUUGAUGCUCGCCAUAUCCAUUGCCCUACUAUUCGCAUCUCAUCACUUCCUCCAGUA-----------AUAUAAGGAUGAGAUCGUUCAGUACGGCAAUGGAAAGAGCUAUAUAACGAAUAGUUGACCU----------G--AUUC
caePb1 A--CCAGAC-UUAACCCGUCUGAUGCUCGUCAUAUCCAUUGCCCUACUCUUCGCAUCUCAUCACUUCGUCCGCCA-----------AUAUAAGGAUGAGAUCGUUCAGUACGGCAAUGGAAAGAGCUAUAACACGG-----UGACCU----------G--AUAC

mir-59   chrIV:11309105-11309244    View MI0000030 at mirBase   

Species Fold Score
ce4 UUUAUUCUUAUGAUAUUUUGAGUUGAUCUAGAUAUGACAUCGUCCUGAAAACGAAACGGAACAAA---AGUUCAAGAUAUUGAUUUCGAAUCGUUUAUCAGGAUGAUGUGAUUAAAAUCAACUCGGACGGUAAGCGAGAGUU
caeRem2 UUCCUUCUGUUAUUCUGUUCCCUUGAUUCAUAGAUGACAUCGUCCUGAAAACGAAGCGAAACUAA--CAUCAGAAGAUA-AGAUUUCGAAUCGUUUAUCAGGAUGAUGUCAUUA--------------------========
caePb1 UUC-UUCUGUUAUUUUUUUU--UUGAAUCAAAUAUGACAACGUCCUGAAAACGAAACGAAACUGAUUCAUUGUAAAG---AGAUUUCGAAUCGUUUAUCAGGAUGUUGCCAUUGGAUUCAAAUGAAAAGGUGAG========

mir-60   chrII:6328631-6328768    View MI0000031 at mirBase   

Species Fold Score
ce4 UACUUCGU----AUUCAUAUUCUACUCGAAAACCGCUUGUUCUUGAACUGGAAGAGUGCCAUAAAAUCAUGACAAAGUACGUGAUAUUAUGCACAUUUUCUAGUUCAAGACUUGAGAAAUC---GGUUAACUGUUUUUGAAAC-A
cb3 UGCUACUG-UCUAUUAAUAUUCU----AGAAACCUCUUGUUCUUGAGCUGGAAAGGUGACAUAAAAUCAUGUCCAAGCACGCGAUAUUAUGCACAUUUUCUAGUCCAAGACUUGAUUAAUAAUGGUUUCAUUUUUG----AAU-U
caeRem2 UGCUUCUGCUCUGCUAGUAUUCUUCACGAAAACCGCUUGUUCUUGAGCUAGAAAGGUGACAUAAAAUCAUGUAUAACAACGCGAUAUUAUGCACAUUUUCUAGACCAAGACAUGAUUUAUC---GGUUCAUCUUUU----ACC-U
caePb1 CGUUGCUC------UAGUAUUCUGUUCGUAAACCGCUUGCUCUUGAGCUGGAAAGGUGACAUAAAAUCAUGUCAGAGAACGCGAUAUUAUGCACAUUUUCUAGUCCAAGACUUGAUUUACC---GGUUUACAUUUU----GUCAU

mir-61   chrV:11769847-11769983    View MI0000032 at mirBase   

Species Fold Score
ce4 AUUCUGCUACUC--CCUGCCUAUUCCAUUAUC------------------GCUGAACCU-CGAGAUGGGUUACGGGGCUUAGUCCUUCCUCCGUAUGGCAAUGACUAGAACCGUUACUCAUCUCGAGGUUUCGGU----GAUCCUUCAAUUUCCCCGUUCU
cb3 AUUCUGCUACU---CCUGUACUUG--------------------------AUCGGUGUCUCGAGCCGAGUUAAGGCUAAUAGUCCUUCCGGUGUAUGGUAAUGACUAGAACCUUGACUCUGCUCGAGUUACUGA-----GCUCUUUGACCCCGCCCCUUCU
caeRem2 CUGCUUCUACC---CCUGUCCCGGCUACUAUUCCUCCCCUCCAGCGUAAUAUCGGUCUUCCGAGUUGGGUCACGGCGCUUAGUCCUUCCGACAUAUGGCAAUGACUAGAACCUUGGCUCAGCUCGGGACUCCGAUGAGCACUUUUUACCCCUUCCCUGUCC
caePb1 CGUUUGUAACUUCGCCUACUCCAUCUAUUCUUCCCAGUCUCGUAAAACAUGUUGAACUU-CGAGUUGGGUCACGGUGCUUAGUCCUUCCAACAGUCGGUAAUGACUAGAACCGUGACUCAGCUCGAGGAAGCGA-----CAGUUUUUCACUGGUUCCUGCU

mir-62   chrX:12692506-12692603    View MI0000033 at mirBase   

Species Fold Score
ce4 GUACUCCGGCUAUAGUGAGGUGAGUUAGAUCUCAUAUCCUUCCGCAAAAUGGAAAUGAUAUGUAAUCUAGCUUACAGGUUGUUCAACAUCCCAAAGA
cb3 GCAACUCGGCUAUUAUAAGGUGGGUUAGAUCCCAUAUCCUUCCGCUUGAUGGAAAUGAUAUGUAAUCUAGCUUACAGGUCUCUCAACAUCUCCAAGA
caeRem2 GCACCCCGGCUAUAGUUAGGUGGGUUAGAUCCCAUAUCCUUCCGCGUAAUGGAAAUGAUAUGUAAUCUAGCUUACAGGUACCUCAACAUCUCGAAAA
caePb1 GCAAUCCAGCUAUAGUAAGGUGAGUUAGAUAUCGUAUCCUUCCGCUUAAUGGUAAUGAUAUGUAAUCUAGCUUACAGGUCGCUCAACAUUCCCAAGA

mir-63   chrX:17598656-17598799    View MI0000034 at mirBase   

Species Fold Score
ce4 CCUGGAGCAACUUUAUUCAUUCAACA----AGCAGACA-CAAUUUCUAACUCGUCGGUAGUCAUCGUUC-----UAGCUGAAAAGGACACUAUGACACUGAAGCGAGUUGGAAAUAGUGGUUCUACUUGAGCAAAACUGUUGAAAUUGGAUUA
caeRem2 ==============AUUCCUCCAACAUGUCAGAAAACAUCCACUUCUAACUCGUCGGUAGUCAUUGUUUCCAUAAACCAGGAAGUGAAACUAUGACACUGAAGCGAGUUAGAAAUGGUGAUUCU=============================
caePb1 ==============--------------------GACA-CCGUUUUCAACUCGUCGGUAGUCAUUGUUC----GGACCAGGAAAUGAAACUAUGACACUGAAGCGAGUUGGAAAUGGUGGUUCUGUGAGAAGACAUUUGUCAAAGAU--AUUC

mir-64   chrIII:2172816-2172965    View MI0000035 at mirBase   

Species Fold Score
ce4 UUUCCUUGCUCUGAACCUCCUCCCCGCUGACCUCGCCGAAUAUGACACUGAAGCGUUACCGAACCGUUUUCCCACACCU---------------GGAUUCGGUGCAACGAUCAGUGGCAUGCUCGGCUAGCGCCAGUUAAGUAUUAUGAUCUACUACUACCCCC
cb3 ============================GGCCUCGCCGACCAUGACACUGAAGCGU============================================================================================================
caeRem2 ============================GGCCUCGCCGAAUAUGACACUGUUGCGUAGCAUGACCAAU----GAGACUCUACAAAAGAGUGAAUGGAUCUG--ACUACGCUCAGUGGAAUACCCGGCGAGUGCC-------------CAUCGGCGAGUGCCCCC
caePb1 AUUCCUUCUGAUAUUCUAUCUCUCCCUCGGCCUCGCCGAUUAUGACACUUAAGCAUAGGUGGACCAUU---CAAGACCAUA-------------GGAUCCA--GCUACGCUAAGUGGAAUAGUCGGCGAGCGCC--UGGAGCAUUUCAAUUCGCUGUUUCUCC-

mir-65   chrIII:2172970-2173109    View MI0000036 at mirBase   

Species Fold Score
ce4 UUCCAGUGCUCUUGGAGCCAUGGAGCCUUCGCCGAUUAUGACACUGAAGCGUAA------C---CGAACACCAUAUUUUGAGAUUCUGCUACGCGCAGUGCCAUGCUCGGCGCGUUGGCUCCAUUAAAAAACGGCCACAAAAAUGCCA
caeRem2 UU-------------AACCA--GAGGCCUCGCCGAAUAUGACACUGACGCUUAAUAUGGAC---CGAUCUCCCCC-----GGAUCCAUAAAAGCUCAGUGUCAAACUCGGCGAGU=================================
caePb1 ------------------------GGCCUUGCCGAUUAUGACACUUAAGCAUAG-GUGGACCAUCGAAGAUCAUA-----GGCUCCAGCUAUGAUAAGUGGAAUAGUCGGCG---=================================

mir-66   chrIII:2173076-2173214    View MI0000037 at mirBase   

Species Fold Score
ce4 UGGCUCCAUUAAAAAACGGCCACAAAAAUGCCAUACAUGACACUGAUUAGGGAUGUGAUGAAUGUUAAGAUCCCGAUCAAAUUCCUAACGGUGUCAAACAUGGCGUAUGUGGUUGUAGUUGGUGAGCUUUUUUGACUU

mir-67   chrIII:5931280-5931418    View MI0000038 at mirBase   

Species Fold Score
ce4 AUUCUCUGGUAUUCCAACU--C-------------GAUCAAAGAUUCGUCGAUCCGCUCAUUCUGCCGGUUGUUAUGCUAUUAUCAGA---UUAAGCAUCACAACCUCCUAGAAAGAGUAGAUCGAUUUUAAAACUUUGAAUUUCGUUUAUUCUUA
cb3 AGAUUCUGAGAUUCUGAUU--CUUUUUAUUCCUAAAAUUCUAGAUAUUUCGAUCAACUCAUUCUGCUGGUUGUUAUGCUGACAAUUGAUGAUUAAGCAUCACAACCUCCUAGAAAGAGUAGACCGAUUCUA=========================
caeRem2 A--UUCC---AUUCGAUUU--CUACAUCUCCAAUAUAUUCUAGAUUAUUCGAUCAACUCGUUCUGCUGGUUGUUAUGCUGA-AACAGA--AAGAAGCAUCACAACCUCCUAGAAAGAGUAGAUCGAUU---=========================
caePb1 ---UCCCGGGAUCCAAAUUAUCUUCUAAUCCUUU---UUCUGGAUGUUUCGAUCAACUCAUUCUGCUGGUUGUUAUGCCAAACAUUGAAAUUUAAGCAUCACAACCUCCUAGAAAGAGUGGAUCGAU----=========================

mir-70   chrV:6665327-6665466    View MI0000041 at mirBase   

Species Fold Score
ce4 UCUAUUUUUAUUAUUUUUAUUCAAA-----------AUAAAACGAUGAAAACUAUCGAAAUACUAUCGACGAAUAACACUUA----UG------AAGAAAUGUAAUACGUCGUU-GGUGUUUCCAUAGUUUGAAUUGUUU-AUUCCAUUAUUUUUGAGCUUU
cb3 -----------UAUUAUUUUCAAAA--------CGGAUG---------UAUCUCUAGGAACAGC-------CAUCAUGUAAGACAUUUCUAACUGAAAGAUGUAAUACGUGAUU-GGUGUUCCCAGAGUUUACC-------GUU---------UC-------
caeRem2 -----------CACUUUUAUUCAGA--------UGAACG--AGGAGAACAGCUAUAGGAAUACCGUUGAUGCAUUACACUAAACAUUU------GAAAGAUGUAAUACGUCAUUUGGUGUUCCUAUAGUUACCC-------GUUCAACUUUUAUU-------
caePb1 UCUAC------UAUUUUAUUUCAUAAAUUUCAUUUAAUGGCAGAAUUGGAACUUCUGAACCACCACUGACGAAUCACAUUGAA-ACUA------AAGAGAUGUAAUACGUCAUUUGGUGUUUCCGAAGUUUAUACUGUCAAGUUUAGCUUACUUUAA-----

mir-71   chrI:9379897-9380030    View MI0000042 at mirBase   

Species Fold Score
ce4 CUAGCUCACACACAGAGGUUGUCUGCUCUGAACGAUGAAAGACAUGGGUAGUGAGACGUCGGAGCCUCGUCGUAUCACUAUUCUGUUUUUCGCCGUCGGGAUCGUGACCUGGAAGCUGUAAACUUGUAAGUUG
cb3 ===========================CUGAACGAUGAAAGACAUGGGUAGUGAGACGUCGGAGCCUCGUCGUAUCACUAUUCUGUUUUUCGCCG======================================
caeRem2 ===========================--GAACGAUGAAAGACAUGGGUAGUGAGACGUCGGAGCCUCGUCGUAUCACUAUUCUGUUUUUCGCCG======================================
caePb1 ===========================---ACCGUUGAAAGACAUGGGUAGUGAGACGUCGGAGCCUCGUCGUAUCACUAUUCUGUUUUUCGC---CGGUACCCAGGCAUCGAAAUUAUG-----GUAAGUUU

mir-72   chrII:2452819-2452957    View MI0000043 at mirBase   

Species Fold Score
ce4 ACUACUA---------CUAUUCUGCUGAAGGUCCCG--UCAGAGCUAGGCAAGAUGUUGGCAUAGCUG----------------AAUGA--------------------------UCGCUAUAACAACUAUCAGCUUCGCCACAUUCUGCCACGCACUGAUGUGAGGACCUGAUUUU------U-----UGAAAAUUUUGAA
cb3 ================CCAUUCUCCCA-UGGACUCG--CCCGAGCUAGGC-AGAUGUUGGCAUAGCUG----------------AAUGCAAAUCAGAAAUCGAAAUUCGAAAAGUUUGAAUUUCGCGCGCUCAGCUUCGCCACAUCGUGCCAUGCGUAGGCUUGAGACCAACAUUUG---AAAU-----UGAAAAAUAUCAG
caeRem2 ACCGCUAUAUUCACUACUAUUCCGUAA---GACUCG--UCAAAGCUAGGCAAGAUGUUGGCAUAGCUG----------------AAUGCAA-----------------------UUUG--------GCGCUCAGCUCGGCCACAUACUGCCACGCAUUGGCUAGAGUCUAAUUUUUAUCCCUAU-----GGUGAGUUUUCCG
caePb1 ACUA------------UUAUUCCCUG----GAUUCG--UUAGAGCUAGGCAAGAUGUUGGCAUAGCUG----------------AAUGA-----------------------------------------UCAGCUUCGCCACAUAUUGCCACGCGCUGAUUUGAGUCCAA-AUUUG---AAAUUUUGAGGUAAGUUUUG--
priPac1 ================-------------GGUCGCGUAUCCGAGUGAGGCAAGAUGUUGGCAUAGCUGAUGGUCGAAUUGAAGCAAU-------------------------------------------UCCGCUCUGCCACAUGUAGCCACGCAC=============================================

mir-73   chrX:2368738-2368876    View MI0000044 at mirBase   

Species Fold Score
ce4 ACUCUUCAUUCAUU------UAUUCC--AGUGAG-AGUCCCACACACGACUGGACUUCCAUAUCGAGCCACAGCUAUC---AACGAAUUUGCUGGCAAGAUGUAGGCAGUUCAGUUGUGCGUUUAUGGAGACCAACAUCCGGAUUAAUCC
cb3 AUUCCAUUCCUCUCUUGCUAUAUUCC--AGUGAGCGGUCCCUCAAACAACCGAGCUUCCCCGUCAAGCCACAGCUAUC---UCUGACAUUGCUGGCAAGAUGUUGGCAGUUCAGUUGUAUG---ACGGAGACCAAUUUCCUGAUUAAUCC
caeRem2 AUUCCACAUUUCUC------UAUUCC--AGCGAGAGGUCCCUCAAACGACUGAGCUUCCACGUCAAGCCUCAGCUAUCGAAUGAAAAAUUGCUGGCAAGAUGUAGGCAGUUCAGUUGUAUG----CGGAGACCAAUUUCCUGAUUAAUCC
caePb1 AUUCGCCAUUCCUU----CAUAUUCCCUACGAAGCGGUCCUUAAUACGACUGAGCUUCCACAUCAGACCACAGCUAUUCACAAAAAAAAUGCUGGCAAGAUGUAGGCAGUUCAGUUGUAUG----CGGUGACCAAUUUCCUGAUUAAUCC

mir-74   chrX:2369016-2369152    View MI0000045 at mirBase   

Species Fold Score
ce4 UUUUUUAGACUACAAAGCA----AAAUGGUUCAAAAAACGUUCGGGCUUCCA-UCUCUUUCCCAGCCUACAUCUCAAC----CUGGGCUGGCAAGAAAUGGCAGUCUACACGUUU-----UUCAACCAAAUGCUAU----------------GGCCUUUUUUUAUU-
cb3 GU-----GACC-GAGACUAAGAAAAAAGGUC---CGCACUUUUGGGCUUCCA-UAUCUUUCCCAGCUCCUCUCAUUUACUAUGGAUGCUGGCAAGAAAUGGCAGUCUAGAUGU======================================================
caeRem2 GU-----GACC-GAAGACGCUGGAAAAGGUC---GACACGUUUGGACUUCCG-UCUCUUUCCCAGCUGAUAUUGGAUA----GCAUGCUGGCAAGAAAUGGCAGUCCAGAUGUGUACACCUUCAAGCUCUUGUCAUUUUUGUUGACCAACUCAACAUUUUUUAAUUA
caePb1 GU-----GACU-CGGAGCG-----AAAGGAU---AGCACGUUUGGGCUUCCAUUAUCUUUCCCAGCAGGUUCACGAAC----GUAUGCUGGCAAGAAAUGGCAGUCCACAUGU======================================================

mir-75   chrX:2372427-2372563    View MI0000046 at mirBase   

Species Fold Score
ce4 UGCGGUUUUUUUUUCUACUUUCUUGUUGCUUUGAAGAAUUGCAGUCGGUUGCAAGCUUAAAUACAAAUCCGAA--------UUGUUAUUAAAGCUACCAACCGGCUUCAAGUCUGAAAGAGC--AGUUGAAAA-------AAGGUAAGCCUGU
cb3 UUCCUGAAUUUUU-----------UCUGCGAGACCGAAUUGCAGUCGGUUGCAAGCUUCAAUACA-----GACAAUGGUUCUUGAUAUUAAAGCUACCAACCGCCUUCAAAUCGUGCAUCGC--GAUUUGGCAAAACAACAAGGUAAGCUUAU
caeRem2 UUUCCUUAUUUUUGACCA------CAUGCAUUGAUGAGUUGAAGUCGGUUAUAAGCUUAAAUACA-----GAACAUACCCGUUGUUAUUAAAGCUACCAACCGACUUCAGAUCAUACUUUGCAUACUUUUACA-------AAGGUAAGUCU--
caePb1 CUCUGCUAUUUUUGUUAA-----UCCUGCCUCGACGAGUUGAGGUCGGUUGCAAGCUUCAAUACAUUUAUGAAA-------UUGAUAUUAAAGCUACCAACCGGCUUCAAAUCGAAAAGUGCGUGUUUGUUCAAA-----GAAGUGAGUUUUU

mir-76   chrIII:3142015-3142151    View MI0000047 at mirBase   

Species Fold Score
ce4 AAUCCUCAGGUAAGAU------AAAAUUUCA---GCUCCUGUCUGGGCUUCACAAUAGUCGAAUACCUUAAAUUUCAAAAUUUGGAUAUUCGUUGUUGAUGAAGCCUUGAUGGGGGUGAGAAAGAAGUUUGCUUAGCUCAAUUUU
cb3 UUUUCCUAGGUAAGUUUGUCUUAAAAUCCCUCAUUCGCCAAUUAGGACUUCACAACAUGCGAAUACCACCACUUCUA-----UGGAUAUUCGUUGUUGAUGAAGUCUUAAUGGACGU============================
caePb1 ======================================CUGUCAGGACUUCACAAUAGUCGAAUACCGAUAGC---------AGGAUAUUCGUUGUUGAUGAAGUCUUAAUGGGUGU============================

mir-77   chrII:12519156-12519295    View MI0000048 at mirBase   

Species Fold Score
ce4 UUCU------------GGUAAGUUUUUUUUUGCAUCUGC--CAAACCGCCCGUUUGGAUGGUUGUGCUCUGAGGAAAUACG---CACAGAAUGUCAUUUCAUCAGGCCAUAGCUGUCCAAAUUGGUAUAGAGUUUGGAAUGUUGAAUCAGUUAUUG
caeRem2 UUAAGAAAAUCUAAAACGUAAGUUUUC-----AAACUGUAAAGAGCUGUUAGUUUGGAUGGCUGUGCUCUGAGGAAAUACGGCUCAUAAAAUGUCAUUUCAUCAGGCCAUAGCUGUCCAAAUUA---UCAAUGUUCGAAAGUUAAAUUAAUU====
caePb1 UCAA--------AAAAGGUGAGUCUAC-----CAAAAAU--AGAGCCAAUAAUUUGGAUGGCUGUGCCUUGAAGAAAUACAGUU-----AGUGUCAUUUCAUCAGGCCAUAGCUGUCCAAAUUGUUA-------------------------====

mir-78   chrIV:15165588-15165723    View MI0000049 at mirBase   

Species Fold Score
ce4 AAAACACAUUUUUUGUUAAAAUAAAAUAUAUUGUUUCAUAGUGUCCGUAAAAUAACUAGAUUUAUUUUGUAAAAACUAUUGGAGGCCUGGUUGUUUGUGCUGGAAUGUUUCGAGAAUAUCAUAAAGCAGUUCAUU

mir-784   chrX:8074842-8074969    View MI0005184 at mirBase   

Species Fold Score
ce4 UUUAUUCGUAUUCUCAGU---UUUUCGACGUCCACGUGGCACAAUCUGCGUACGUAGAAA---GAUCAAAAAGUCACUUCUAUGUACAAAUGUUGCGCUGCCUGGCACAGUGAAUGAAUUUAUGGGUUAAAAA
cb3 GUCGGAUCCAUUCCUCAA---UUUGUACUA-CCAAGUGGCACAAUACCUGUAUGUAGAUAGUGAAGUA---AUAUUGUUCUACAUACACCUAUUGAGCCACCUGG============================
caePb1 UUCCUGAAUAGUCCCCAAAGCUCUGCUACA-CCAAGCGGCACAAUGUUUAUGAGUAGAUA---AAUCAC--AUCUUGAUCUACACAUAUCCAUUGUACCUCCUGG============================

mir-785   chrX:3004639-3004772    View MI0005185 at mirBase   

Species Fold Score
ce4 UUAUC-GGAAAGCUGCCA----AAGCUCUUUUUCUCACCCAUCAGCACAGAAUUUUUC-GCUAACAGAAAC--CUCAAAA-----CAAUGUAAGUGAAUUGUUUUGUGUAGAUGGUGGAAAUGAGCAGGCA--AUGUUUUCUGACUUU
cb3 UUGGCAUCAGAUUUGAAAUGCGUUGCUC--UUUCGCAACCGUCAGCACAGAGUGCUUCGACUUACACAGAAUUCGUAAAACCAACUGAUGUAAGUGAA-UACUCUGUGUUGAUGGUGAUGAUGCUGAAACGUAAUGUAUUCUAGCUAC
caeRem2 UCUGCUCCGGAGACGAAA----CCGCUC--UUUUUUGUCCGUCAGCGCAGAAUUUUUUCGCUUACACGAGUAAUGUAAA------CGAUGUAAGUGAA-UAUUCUGUGUCGAUGG------------------===============
caePb1 UCCGC-CUAGAUACCCCA----AAGCUC-UUUUCUCUCCCGUUAGCACAAAAUAUUUU-ACUUACACAUAA----CAAAACAUA-UGAUGUAAGUGAA-UACUUUGUGUUAAUG--GAAAAAGGGCAUACA--===============

mir-786   chrX:7882674-7882803    View MI0005186 at mirBase   

Species Fold Score
ce4 GGUGAGUAAAGUAAGUAAAGGGAUAGUUCCCGAUCGAAUAUCAGUUGG-GGUAUUUACA-AAAAGACAAAAUUGUAAUGCCCUGAAUGAUGUUCAAUCGGUGAUGAAUCUC--AUUUUUUAUUGUGUUUUGGA
cb3 -------AGAGUAAGUUUAGGGACCCUUCCCAACAAAAUCUCAAAUAGUGGCAUUUACACAAGCAAU-GGUAUGUAAUGCCCUGUACGAGAUUUGGUUGGUGAGAAGUCUC--====================
caeRem2 -----GCAGAGUAAGUUUCGGGACAAGUCCCAAUAGAGUCUCGGACAG-GGCAUUUACAUACAAGAUAAAUUUGUAAUGCCCUUGCUGAGAUUCCAUUGGUAUCACGUUCCACAUUUAUAAGUUUAUUCU-AA

mir-787   chrX:11294614-11294743    View MI0005187 at mirBase   

Species Fold Score
ce4 ACUACAGCUCGCAGAGCAGGAUGUAUCAGUGGACGAAAGAUAC-AUACGAUCUUACAUC-UUCAAAAUGGUAUGUAAGCUCGUUUUAGUAUCUUUCGUCUCUGAUCACAUUCAAUUAAGGUAAUACAUGUU
cb3 ===============================GAAGAAGGAAACUAGACAAUCUUACAUAGCUCAAAAUAAUCUGUAAGCUCGUCUUAGUUUUCCUCUCCUCU=============================

mir-788   chrX:8485212-8485329    View MI0005188 at mirBase   

Species Fold Score
ce4 UUAC-------AAAUUUUCAGCUGGAAGCUCACUUUUCCGCUUCUAACU--UCCAUUUGCAGAGUU---CAAGUAAUCUGG-AAAUGG-AUUAGAAUCGUGGAAAAGU--UAGUG-AAUAGCAGUUUUCAAAAU
cb3 ----GAAUAUUCGA---UUAGCCUGAAACUAACUUUUCCGCUUCUCAAUGCUCCAUUUGCAAAAUCAAAUUGAUUUUCUUGCAAAUGGGAUGAGAACCG--GAAACGU--UUGAUUGACGGAAACUUUGAAAAU
caeRem2 ------------------UGGCCUGAAACUUACGUCUCCGCUUCUAACU--UCCAUUUGCAGAGUUCA-UCAAUUCUCUGG-AAAUGG-AUUAGAACCGU-GAAAUGU--UAGUA---================
caePb1 UUGCAACUGUUCAAAUGUCGAUCUGAAACUCACUUUACCGCUUCUAUAC--UCCAUGCGCAGUGUU---UGAAAACUCUGA-GCAUGG-AAUAGAGGAG--GAAAAGUGGUUG---AA================

mir-789-1   chrIV:16740631-16740767    View MI0005189 at mirBase   

Species Fold Score
ce4 UUCGGUGUGAAUCAGACGAAUGUCCUGAAGGCAGGCAAUUGAUGACCCAGACAAGGACUAAUCAAGAUUGUCGAUCUAGUCCCUGCCUGGGUCACCAAUUGUCGGCCCCCGCGGGCAAAGAAUAUAUACUUUCUAG

mir-789-2   chrIV:17309241-17309377    View MI0005190 at mirBase   

Species Fold Score
ce4 UCGGUAUGAAUCAGACGAAUGUCCUGAAGGCGGACAAUUGAUGACUCAGGCAGGGACUAAUCAUGAUUGUCGAUUUAGUCCCUGCCUGGGUCACCAAUUGUCGGCCCCCGCGGACAAAGAAUAUAUACUUUCUAGUA

mir-79   chrI:9332916-9333053    View MI0000050 at mirBase   

Species Fold Score
ce4 UCAUAUGGUAAGUUGA------AAUUAG---UAGAC-AUUCUCCGAUCUUUGGUGAUUCAGCUUCAAUGAUUGGCUACAGGUUUC---UUUCAUAAAGCUAGGUUACCAAAGCUCGGCGUCUUG-AUCUACAGUUCUUUUUUUUUUU-AAAU
cb3 UCCGGUGGUAAGUUGGAAAAAUCCCACAUUCUAGAACAUUCUCCGAUCUUUGGUGAUUCAGCUUAAAUGAUAGAAUUCAGACGU----CUUCAUAAAGCUAGGUUACCAAAGCUCGGCGUUCCA-GUUCGACCAUUUUAAUCCUUUU-====
caeRem2 UCCUAUGGUAAGUUUG---AAUAUCAAA---UAGAA-AGUUUCCGAUCUUUGGUGAUUCAGCUUAAAUGAUAGACUCAAUAUGUUAGACUUCAUAAAGCUAGGUUACCAAAGCUCGGCGGCCGA-AUCUAUCUUUUUUUUUCUUUUU----U
caePb1 UCCUUUCGUAAGUUUC------CACACA---UAGAUAUGGUUCCGAACUUUGGUGAUUCAGUUUUAAUGAUUGACGAUUUACCGUUUUCUUCAUAAAGCUAGGUUACCAAAGCUCGGCGCUUCAUGUCUCAUCUUUUUCUUUUUUUUCAAAU
priPac1 ======================================UUCUUCG--CUUUGGUUAUCUUGCUUU-----CUGACUAAAUGUCCAAG-GUUCAUAAAGCUAGGUUACCAAAGCUAAGCG-----------------------------====

mir-790   chrIV:5566389-5566498    View MI0005191 at mirBase   

Species Fold Score
ce4 CAAAA-AAAAAGUCCC-UUCAGCCGGCUUGGCACUCGCGAACACCGCGAUUUCACU-UAUA---ACUCGCGGCGUUAGCUCUGUGUCAAACCGGCG-UAGCUGAUGACUCAG--AUUU
cb3 ======AAAAAGUCCC-UUCCGAUUGCUUGGCACUCGCGAACACCGCGAUCACUUCCAAUAUCGAUCCGCGGAGUUAGC-CAGUGUCAACCAAAUGGAUGUUUGAGACUUGUCAUUCU
caeRem2 ----AAUCAAGGUCCC-UUUUGACUGCUUGGCACUCGCGAACACCGCGAUCUUAUCAGAUA---AAUCGCGGAGUUAGC-CGGUGGCAACCAGGCGAAUGUUUGAGACUCAC--UUUU
caePb1 ----A-AAAAGGUCCCGUUCUACCUGCUUGGCACUCGCGAACACCGCGAUCUAACUGUAUA---AAUCGCGGCGUUAGC-UCGUGGCAAACAGGUG-AUGCUGAAGACUUUC-AUUUU

mir-791   chrX:5809287-5809411    View MI0005192 at mirBase   

Species Fold Score
ce4 UAGUCUACUUUGUAGGUUUGAACCUUCGAUUACCUUAUCCGUUGUAGCCAAAGUUCAACGAA--GCGGCAACUUUGGCACUCCGCAGAUAAGGCAAUCGAUUGUUU-UUGACA-----CUUCAAUACCACGA
cb3 UAAGAUUUUUGG-------GAAUUCUCGAUCACCGUAUCACGUGUGGCCAAAGUCAAAUCCA-UUAUUGAACAUUGGCACUCCGCUGAUUUGGUGAUCGACUUUUC--UGGAAUAACAUUUUAGUA======
caeRem2 UUCGUUACGUUC-------GAAUUCUCAAUCACCUUGUCAGGUUUAGCCAAAGUCAAACAUA--AACUGAACUUUGGCACUCCGCUGAUUUGGUGAUAGAGUUUUU--UGGCA-------------======
caePb1 ------AUACUA-------CAAUUCUCAGUUACCUUAUCACGUGUUGCUAAAGUUCAAUACAUUUAGUGAACUUUGGCACAACGCUGAUUAGGUGACUGAUUAUUUU-------------------======

mir-792   chrV:3041899-3042028    View MI0005193 at mirBase   

Species Fold Score
ce4 ACAUAUUAUUUAAUCAUUUUAAGUUGGUCAACGUUUGAGAGUUCAAAAGAUUUAGCAAUUUUAUACGAGUGAAAUUGAAAUCUCUUCAACUUUCAGACGUUUUCUGAUUUAUUAGCAAGGUAAAAAGUU

mir-793   chrX:13857864-13857995    View MI0005194 at mirBase   

Species Fold Score
ce4 AUAAUAUUUCUUACGGAGAUGGUUGGUAAAAGUCUGUUUAACUAUUGUACAUCACAAUUUUCACUGCGAAAAAUUGAGGUAUCUUAGUUAGACAGACAUAUACUACAACCAGUUUUAUUAUAAAACAUACG

mir-794   chrI:12595657-12595780    View MI0005195 at mirBase   

Species Fold Score
ce4 ACUAUUCUGCAAAAAAAAACUGAGCGUGUCUCUUGAGGUAAUCAUCGUUGUCACUUCGCAAAGUUGGAAUUGAAAACGUUGUCUAUCUCGAAAGGCUUAUCAGUUUCUCACUCACAAGGAAAG

mir-795   chrI:12594536-12594664    View MI0005196 at mirBase   

Species Fold Score
ce4 CCAGCUAUACAUAUUCCGAGAAACGUUACCUGCUGAGGUAGAUUGAUCAGCGAGCUUGAUACCCCGUUCAAAAUCGUGAUCAGUAUACUUCGUCAGGCAGCUUGUUUUCUUUUUGUGUUCGGAAGUUU

mir-796   chrX:1798903-1799031    View MI0005197 at mirBase   

Species Fold Score
ce4 UCGUUUAAAUACUUCAGAUACUCUAAUGACAAGCUGGAAUGUAGUUGAGGUUAGUAAAAGCACUAUACUUGUUACAAACCUUGCCACGUUCCGACUUGUCAAAAGAGUCACAAAACUACAGCAGGAUU

mir-797   chrX:4757057-4757185    View MI0005198 at mirBase   

Species Fold Score
ce4 UAUUCGAGCACGAUGACCCCGUCCAAUGGACGAUAUCACAGCAAUCACAAUGAGAAGAAUACAUCUAGAUACUCUUUUCAUUGGUUUCUGUGAAAUCGUAUUUGAAUGGAAAGUUUUAUAUUGAAGAG

mir-798   chrIV:14277259-14277374    View MI0005199 at mirBase   

Species Fold Score
ce4 AAUUCUUGGAAUUUUAAAAGUACUGUUUCAUGUAGGUGUUAAAGUUUGUACAAGAAGUUAGUUUUCUGUUAAGCCUUACAUAUUGACUGAGCAGUAAAAUACAUGAAAAUUUAAA

mir-799   chrX:8600562-8600694    View MI0005200 at mirBase   

Species Fold Score
ce4 UAUUGGUAUAAAAUAUGUUAGUUUUUCAAUUUUUUUCACCG------------GUUUUAAAAAGUGGUUUCACAUUCAAUAAAGACAUGUGAACCCUGAUAAAGCUAGUGGAAAUAUCGGAAAACAUUGUUAGGAGCAUAUGAA
caePb1 UUUUCGAAAUCUAUUUCUCAGUUUUCCAA-UCUUUGCUCCGUUAUGAGUGAGCGUUUCAAAUGUGAGUUUUACAUUUA==================================================================

mir-80   chrIII:8865157-8865294    View MI0000051 at mirBase   

Species Fold Score
ce4 UGGUGCUUAUU---------CCUUUUUCA----AUGGACACUCGUUCGCUCAGCUUUCGACAUGAUUCUGAACAAUCCGCA-AGCCCAUGUUGUUGAGAUCAUUAGUUGAAAGCCGAAUGAUCA-GAGAUAUCCACAUUCACAACCUGAAGU
cb3 CCAAUUCUAUUGGGGUCUUACCCUCUCUA---CUUGGACACUCUUUCGCUCAGCUUUCGACAUGAUUCUAAACAAUACGCUGUCGCAAUGUUGUUGAGAUCAUUAGUUGAAAGCCGAACGAUUC-GAGAUAUCCAAUUUAAUAA========
caeRem2 ACAUUCCUAUA-----UUCACCUGUUUUAUUACUCGGACACUCUUUCGCUCAGCUUUCGACAUGAUUCUAAACAAUACGUCGAGACAAUGUUGUUGAGAUCAUUAGUUGAAAGCCGAACGAUUUUGAGAUAUCCACCUUUGC--========
caePb1 UGGUUUCUAUUA----UUCGUUAUUACUA-UAUUCGGACACUCUUUCGCUCAGCUUUCGACAUGGUUCUGAACAAUACGCAUUGCAUAUGUUGUUGAGAUCAUUAGUUGAAAGCCGAAUGAUUU-GAGAUAUCCAC--------========

mir-800   chrX:380900-381012    View MI0005201 at mirBase   

Species Fold Score
ce4 CAAAGGGUAGGAUACCGUGAACGGCGGCUGACAAUUUCCGAGUUAGGCCACUCUUAUAAUCAGUGGCCAAACUCGGAAAUUGUCUGCCGCCGUGAAAACCUACCCCUCGGAA
caeRem2 ===================================================================================================CUACCUGUCGGAA

mir-81   chrX:2431046-2431193    View MI0000052 at mirBase   

Species Fold Score
ce4 CUUCUAUUC--AAUGCAUAAAAUCAG-UGCCAUCGUGCCCAACAGUCGGUUUUCACCGUGAUCUGAGAGCAAU-CCAAAAAUGCUUUUCUGAGAUCAUCGUGAAAGCUAGUUGUUGGUCUAC-GGGCUUUU----------------GCGAAAUACUCGAAAGUAA--GA
cb3 CUACUUUUUUGACUAUUAUUAUUCUA-UGCCAUCGUGAUUAACGGUCGGUUUUCACCUUGAUCUGAGAGCAAUAACCAGAAUGCUUAUCUGAGAUCAUCGUGAAAGCUAGUUGUUACUUCACUCGGCUUUUUGUC------------UCAAAA------AAGGAAAGUUA
caeRem2 CUACUACUUUGACUAUUCUAAAACCACUGCCCUCGUGGCCAGCAGUCGGUUUUCACCUUGAUCUGAGAGC--UAAACAUAAUGCUUAUCUGAGAUCAUCGUGAAAGCUAGUUGCAGGUACAC-AGGCUCUUUGACAUUAAUGAAUAAUCGAAAUAA--CAGGAAAAAUGA
caePb1 CUAUUUUCU--ACUGCUUCUAUUCAAUUGCCAACGUGGUCAACAGUCGGUUUUCACCUUGAUCUGAGAGC--U-AUCUGAAUGC-UAUCUGAGAUCAUCGUGAAAGCUAGUUGUUGUUUCACAGGGCCUUUUAAA------CGCUGAUAAAAAAAAGCUAAAGAAAAUGA

mir-82   chrX:2435232-2435368    View MI0000053 at mirBase   

Species Fold Score
ce4 UC--UACUAC---------UAGUGAACUCAUGAAAUAG--GUUCUUUUAGCAACCGGUUUUCUCUGUGAUCUACAGAAU---GACAGCUAA-UCGUCUGAGAUCAUCGUGAAAGCCAGUUGUUUUUAUG---AACUCUUAUCAAGAAAAUUCAAGA
cb3 UCCGUAUUCG--------AUAUUAAAACUAUAAAAA----GUUCUUCUAGCGACAGGUUUUCGCCGUGAUCUGCAGAGUUCCAUGAAGAAA-ACAUCUGAGAUCAUCGUGAAAGCCAGUUGCUUAAGAG---GACUCAUUG----------UGAAA
caeRem2 UC--UAUUCCUACUAAACAUAUUGAAACUAUAAAAAA---GUUCUUCUAGCGACAGGUUUUCCCUGUGAUCUGCAGAGU---ACAAAGAAAUACAUCUGAGAUCAUCGUGAAAGCCAGUUGUUUCCAAG---AACUCCUUAAAA-------UGAGA
caePb1 UC--UACUCCUACUGGAAGUAUUAAAGUGAAAUAAAAUAUGUUCUCCUAGCAACAGGUUCUCACUGUGAUCUGCAGAGU---AUAAAGCCU-ACAUCUGAGAUCAUCGUGAAAGCCAGUUGCUUACGAACUAAAUUCAUAAAAAGUAG-UCUAAUA
priPac1 UC--CAUCCUUACCCUCCUUGCUCA------------------CUCCCGGCAUGCGGUUUUCACGUUGAUCUGAGAGCU---AAUCGAUAU-GUUUCUGAGAUCAUAGUGAAAGCUACUUG===================================

mir-83   chrIV:7841594-7841731    View MI0000054 at mirBase   

Species Fold Score
ce4 ACAAAUUAUUCAAUUUAA---------AAGCACCACUCGGAACCACUGAAUUUAUGUGUGUACUU-GACGGCCAACAAGAGCAUCGAUCUAGCACCAUAUAAAUUCAGUAAUUUCGCGU--CGAGAGCUA---UUCUGUAUUCAAUUAUUUG
cb3 ----CCAAUUCUUCAGGAAGCAGCAGAAGGCACCACUCGAAAAAACUGAGUUUAUGUGUGUACUU-GACGGCG-AUCAGAGCAACGAUCUAGCACCAUAUAAAUUCAGUGUUUUCGUGGACAGAGAGCCAAGUUUUUAUAUUUUUUAGUUUA
caeRem2 ----UUCUUCUUUCAGGAUAC--CAGUAGGCACCACUCGGAAAAACUGAGUUUAUGUGUGUACUU-GACGGCC-ACUCGAGCAACGAUCUAGCACCAUAUAAAUUCAGUAUUUUCGUGG--AGAGAGCCAAUUUUUUAUAUUUUUAUAUUU-
caePb1 ----AUCAUCCAAUGGGA---------AGGCACCACUCGGAAAAACUGAGUUUAUUUGAGUACUUAGACGGCC-AUUAGAGCAACGAUCUAGCACCAUAUAAAUUCAGUAUUUUCGUGGA-UGAGAGCCUAUUCUUUCAAUUUCUU------

mir-84   chrX:16022301-16022415    View MI0000055 at mirBase   

Species Fold Score
ce4 UAUUCAUCAUAC-GUCUGCCUGUGGCAUCUGAGGUAGUAUG-UAAUAUUGUAGACUGU-CUAUAAUGUCCACAAUGUUUCAACUAACUCGGCUGUUCUGUUGAGACAUGUAUAUGUU
cb3 AUUCAGCCGUACUGUCUGAAAAUAACAUCUGAGGUAGUUUG-CAAUGCUGUCGACGUAACUGAAAAGUCAACAUCAUUCCAACUUCCUCGGCUGUUC====================
caeRem2 AUUCUACGAAACAGUCUAACAGAAGCAUCUGAGGUAGUUUG-UAAUGCUGUCGACGCA-CUGUAAUGUCUACAUCAUUUCAACUGCCUCGGCUGUU---UUUAGACUUUUGUUUUGU
caePb1 ACUUCUAAAGAUUGUCUCAAAGUAACAUCUGAGGUAGUUUGGAAAUGCUGUCGACGCA-UUGUGAUGUCAACAACAUUUCAACUAACUCGGCUGUU-====================

mir-85   chrII:8393457-8393602    View MI0000056 at mirBase   

Species Fold Score
ce4 UUUCUCGU-CGUUCGUAUUCUAUAGAAU-----UUUGGCG-----------UCGGAGCCCGAUUUUUCAAUAGUUUGAAACCAGUGUACACAUAAAUGGUUACAAAGUAUUUGAAAAGUCGUGCUCUGAAAAUGAAUU-----------------------------------------------------------CUUACAUGAUCUUCUUC-UCCCGAU
cb3 UUU------CUUUUUUAUUCUAAAAAAA-----UCAAAAAA--CAGU-ACCCCGGUGCCCGCUUUUUCAGUAGUUUGAAACCAGAGAUGAU--AGUUGGUUACAAAGUAUUUGAAAAGGCGUGCACUG--GGUAAAUUUUGAAUAGACUGGUAAGA--UUUUAUUUUUCUGAAAUUCUG--AAUUUUCAGAAGAGCAGGUACAUGAUCUCUUUC-UCCCGGC
caeRem2 UUC---AUAUUUUUCUAUUGGAGAAGAAGACGUUCUGAAG-----------UCGGAGCCCGUCUUUCCAAUAUUUUGAAACCAGUACUCAUGCAAAUGGUUACAAAGUAUUCGAAAAGGCGUGCUCUG------------------------------------------------------------AGAAGAGCUCUUACAUGAUCUCCGCCUUCCCAUC
caePb1 UUUCUAAUACUUGUAUAU-----------GUAUUCACGAGGUUCGGUCACCACGGUGCCCGACUUUUCAAUAUUUUGAAACCAGUUAUUCUGAGAAUGGUUACAAAGUAUUUGAAAAGCCGUGCACUG-----------------------UAAGAAUCUCUCUUUGUCGGUAAGUCUAUUAAUU---------------ACACGAUCUCCUUCUCCCAAUC

mir-86   chrIII:11936498-11936635    View MI0000057 at mirBase   

Species Fold Score
ce4 CUGUCCCUUUAAAAGAGACA-CGUGUCCACGCCGUCUAAGUGAAUGCUUUGCCACAGUCUUCGAUGUUCUGAAAUGAAGCCUGGGCUCAGAUUCGCUUAGGCCGGAGUUU---GACACGG-----CAUUUUUCUAAUAUCUUUAUG
cb3 CCCUUCCUCUUCAACAAAC--CGAGUCAAUGCCGUUUAAGUGAAUGCUUUGCCACAGUCUUCGAUCAUGUCACAUGAAGCCUGGGCUUAGAUUCACUUAGGCCGGCGUUCCUUGACUCAGCCUUUUUUUCUUCUUGGGUUUUUUUG
caeRem2 CCAUACUUUUCAAAC-------GAGUCGGCGCCGUCUAAGUGAAUGCUUUGCCACAGUCUUCGACCAUGUCAAAUGAAGCCUGGGCUAAGAUUCGCUUAGGCCGGCGUUUUUCGACACGGA----UCUUCAACUUUGGUGAAUUGG
caePb1 CC---CUUUUUAAAAAUACAACGAGUCGGCGCCGUCUAAGUGAAUGCUUUGCCACAGUCUUCGACCAUGUCAAAGGAAGCCUGGGCUCAGAUUCGCUUAGGCCGGCGUUC---GACACG------UUUCUUUGUGGGCUGCUUUGG

mir-87   chrV:12038474-12038607    View MI0000058 at mirBase   

Species Fold Score
ce4 AACUUC-UCAUCCUCA----ACACAGGUUGUGCCA-UCCGGCCGCCUGAUACUUUCGUCUCAACCUCGCUGUCAGA-UUGGUCGUAGGUGAGCAAAGUUUCAGGUGUGCCGGAACACACCCAUACUUUGCCUAAUUGGUA
cb3 GAUUUCUCCA-------------CAGGUUGUGCCCACCCGGCCGCCUGAUACUUUCGUCUCAACCUCGCUGUCAGA-AU-GUCGUAGGUGAGCAAAGUUUCAGGUGUGCCGGAACACACCCAUACUUUGCUCUGUUGUUG
caeRem2 AACUUCUUCAUCC-------AUACAGGUUGUGCCU-UCCGGCCGCCUGACACUUUCGUCUCAACCUCGCUGUCUGAUAUAGUCGUAGGUGAGCAAAGUUUCAGGUGUGCCGGAACACAUCCUCACUUUGCCCAGUUUUUA
caePb1 UAUUA--UCAUCCU------AGACAGGUUGUGCCU-UCCGGCCGCCUGAUACUUUCGUCUCAACCUCGCUUCUCUC-AUUGUCGUAGGUGAGCAAAGUUUCAGGUGUGCCGGAACACA-CUUCGCUUUGCCCUAAAAGUA
priPac1 ==CCUCUCUAUCUCCAAUGGGGUGACGUCAUGCUC-----GUCGCCUGA-ACUUGUA-CUCAACCUCGUCAAUAGA--UGAGCGCAGGUGAGCAAAGUUUCAGGUGUGC===============================

mir-90   chrIII:8873874-8874011    View MI0000059 at mirBase   

Species Fold Score
ce4 CUUUCCAUUUCUAACA--------------AAACGGGCGCCA--UUUCGAGCGGCUUUCAACGACGAUAUCAACCGA-----CAACUCACACUUUUGCGUGUUGAUAUGUUGUUU-GAAUGCCCCUUGAAUUGGAUGCCACAGGUUUUCUUUUAUUUUA
cb3 ------------------------------------GCACCA--UUUCAAGCGGCCUUCAACGACUAUAUCAACCGA-----AUCCAAAU----UCGCGAGUUGAUAUGUUGUUUUGAAUGUCACUUGAGGU-------------UUUUGCU--UUUUC
caeRem2 UCUCCUU-----------------------GUUUGGGCCUCA--CUUCGAGCGGUAUUCAACGACUAUCUCAACCGAUAUACAUACCAAC-------CGAGUUGAUAUGUUGUUU-GAAUGCCCCUUGAACUCGAGGCCCCUAGU==============
caePb1 UUUUCUUCACCCCACCGAAGAUGGUCCUGGACUUGGGCGCCAAGUUUCGAGCGGCUUUCAACAACGAUAUCAACCGA-----UUUUCAGUAAA-UUGCGAGUUGAUAUGUUGUUU-GAAUGCCCCUUGAGUUGGUUGCC------==============