Supplementary Fig 2C. Drosophila miRs of intermediate conservation. n = 46

Color Code:    mir sequence   mir* sequence   predicted mir*   mutation

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let-7   chr2L:18467942-18468060

Species	Sequence
dm2	TCTCTGGCAAATTGAGGTAGTAGGTTGTATAGTAGTAATTA-CACATCATACTATACAATGTGCTAGCTTTCTTTGCTTGACTAC
Sim1	TCTCTGGCAAATTGAGGTAGTAGGTTGTATAGTAGTAATTA-CACATCATACTATACAATGTGCTAGCTTTCTTTGCTTGACTAC
Sec1	TCTCTGGCAAATTGAGGTAGTAGGTTGTATAGTAGTAATTA-CACATCATACTATACAATGTGCTAGCTTTCTTTGCTTGACTAC
Yak2	TCTCTGGCAAATTGAGGTAGTAGGTTGTATAGTAGTAATTA-CACATCATACTATACAATGTGCTAGCTTTCTTTGCTTGACTAC
Ere2	TCTCTGGCAAATTGAGGTAGTAGGTTGTATAGTAGTAATTA-CACATCATACTATACAATGTGCTAGCTTTCTTTGCTTGACTAC
Ana3	TCTCTGGCAAATTGAGGTAGTAGGTTGTATAGTAGCAACTA-AGAATCGTACTATACAATGTGCTAGCTTTCTTTGCTTGACAAT
dp4	TCTCTGGCAAATTGAGGTAGTAGGTTGTATAGTAGTACTT--CAGATCGTACTATACAATGTGCTAGCTTTCTTTGCTTGACTAT
Per1	TCTCTGGCAAATTGAGGTAGTAGGTTGTATAGTAGTACTT--CAGATCGTACTATACAATGTGCTAGCTTTCTTTGCTTGACTAT
Wil1	TCTCTGGCAAATTGAGGTAGTAGGTTGTATAGTAGTAATTATTCAATCATACTATACAATGTGCTAGCTTTCTTTGCTTGACTAT
Vir3	TCTCTGGCAAATTGAGGTAGTAGGTTGTATAGTAGTATTTA-TAGAGCATACTATACAGCGTGCTAGCTTTCTTTGCTTGACAAT
Moj3	TCTCTGGCAAATTGAGGTAGTAGGTTGTATAGTAGTACTTA-TAGACCATACTATACAGCGTGCTAGCTTTCTTTGCTTGACTAT
Gri2	TCTCTGGCAAATTGAGGTAGTAGGTTGTATAGTAGTATCTA-TCTACCATACTATACAGCTTGCTAGCTTTCTTTGCTTGACTAT

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miR-1002   chr2L:13747588-13747717

Species	Sequence
dm2	G-------AAATTATATATTTAAGTAGTGGATACAAAGGGCGATTTG---------ATATAAAAGTGTCGCAT-TGTATGACCTACTTAACTAGCTGATTTTGT
Sim1	G-------AAATTATATATTTAAGTAGTGGATACAAAAGGCGATTTG---------ATATAAAAGTATCGCAT-TGTATGGCCTACTTAACTAGCTGATTTTGT
Sec1	G-------AAATTATATATTTAAGTAGTGGATACAAAAGGCGATTTG---------ATATAAAAGTATCGCAT-TGTATGGCCTACTTAACTAGCTGATTTTGT
Yak2	a-------aaattatatatttaaGTAGTGGATACAAAAGGCGATT-G---------ATATAAAAATGTCGCAT-TGTATGGCCTACTTAACTAGCTGATTTTGT
Ere2	A-------AAATTATATATCTAAGTAGTGGATACAAACGGCGATTTG---------GTATAAAAATGTCGCAT-TGTATGACCTGCTTAACTAGCTGATTTTGT
Ana3	TGCAAACTAAATCATGTGTTTAAGTAGGCAATACAT-GGGCGACTAA---------ATAAAATATACTCGCAA-TGTATAGCCTACATAACTAGTTGATTTT--
dp4	AAAGAACTTTC-------------GCATTGTGTGACCTACTTAAATGCTCGATTGTTTCAAGCAACCTCTAAAATCTACCTG---------GAGTAGCCCCAAA
Per1	AAAGAACTTTC-------------GCATTGTGTGACCTACTTAAATGCCCGATTGTTTCAAGCAACCTCTAAAATCTACCTG---------GAGTAGCCCCAAA
Wil1	A-------AAATGTTACACTTAAGTAGTTAATACAA-TGGCGATTCGTATTCCATTGTACA------TCGCAT-TGTGTGAGTTACTTTGTTGAGAGATTTT--
Vir3	A-------AAATTTGTCATTTAAGTAGGTCACACAATG-CGATGCAA---------GAAAA---AACTCGCCCTTGTATTAACTACTTAAGCGTTCAATTTTCA
Moj3	TAACAAACTTAAGTTGA-------ATATTATAC-----ATATATATAAAATGCA--------------TCTCG-TAAGCCAT---------ATATA--------
Gri2	A-------AAATTTAACACTTAAGTAGTTGATACAAGGGCGAGTTTC---------ATAAA---GTATCGCAT-TGTGTGACCTACTTGAATGAGAGATTTTTA

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miR-11   chr3R:17448198-17448313

Species	Sequence
dm2	AGGCGC---ACTTGTCAAGAACTTTCTCTGTGACCCGCGT----G----------TACTTAAAAGCCGCATCACAGTCTGAGTTCTTGCTGAGTGCGA-AATC
Sim1	AGGCGC---ACTTGTCAAGAACTTTCTCTGTGACCCGCGT----G----------TACTTAAAAGCCGCATCACAGTCTGAGTTCTTGCTGAGTGCGA-AATC
Sec1	AGGCGC---ACTTGTCAAGAACTTTCTCTGTGACCCGCGT----G----------TACTTAAAAGCCGCATCACAGTCTGAGTTCTTGCTGAGTGCGA-AATC
Yak2	AGGCGC---ACTTGTCAAGAACTTTCTCTGTGACCTGCGT----G----------TACTTAAAAGCCGCATCACAGTCTGAGTTCTTGCTGAGCGCGA-AATC
Ere2	AGGCGC---ACTTGCCAAGAACTTTCTCTGTGACCTGCGT----G----------TACTGAAAAGCCGCATCACAGTCTGAGTTCTTGCTGAGCGCGG-AATC
Ana3	AGGCGC---ACTTGCCAAGAACTCTCTCTGTGACTTGTGTCCTTT----------TTTTCGAAACTCACATCACAGTCTGAGTTCTTGCTGAGAGCGGGAATC
dp4	AGGCCC---TCTTGTCAAGAACTTATTCTGTGACCTGCGT----GA---------CATTT---AGCCACATCACAGTCTGAGTTCTTGCTGAGCGTGA-ACTC
Per1	AGGCTC---TCTTGTCAAGAACTTATTCTGTGACCTGCGT----GA---------CATTT---AGCCACATCACAGTCTGAGTTCTTGCTGAGCGTGA-ACTC
Wil1	AGAAGCCCTTCTTGTCAAGATCTCTCTCTGTGACCTGCGT----GAGATTTATCATATATGAAAACCGCATCACAGTCTGAGTTCTTGCTGAGCGTGA-GCTA
Vir3	AAGCGC---ACTTATCAAGAACTTTTTCTGTGACTTGCGT----GAACTCT----TATATGCAAACCGCATCACAGTCTGAGTTCTTGCTTAGCGCGC-ACTT
Moj3	AAGCGC---ACTTAACAAGAACTTTTTCTGTGACCTGCGT----GAATTCC----TATATGCAAACCGCATCACAGTCTGAGTTCTTGCTTAGCGCGC-ACTT
Gri2	AAGCCC---ACTCGTCAAGAACTCTCTCTGTGACTTGCGT----GAACTTT----CATGTGAAAATCGCATCACAGTCTGAGTTCTTGCTGAGCGCGC--TTT

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miR-137   chr2R:11580096-11580227

Species	Sequence
dm2	TCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTG-AAATCCAAA-TGTTATTGCTTGAGAATACACGTAGTTCACCGAGATT
Sim1	TCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTG-AAATCCAAA-TGTTATTGCTTGAGAATACACGTAGTTCACCGAGATT
Sec1	TCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTG-AAATCCAAA-TGTTATTGCTTGAGAATACACGTAGTTCACCGAGATT
Yak2	TCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTG-ACATCCAA--TGTTATTGCTTGAGAATACACGTAGTTCACCGAGATT
Ere2	TCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTG-ACATCCAA--TGTTATTGCTTGAGAATACACGTAGTTCACCGAGATT
Ana3	TCTCCAATGGCCACGTGTATGCTCGTAGCTATAACGTG-AAATGCGAAATGTTATTGCTTGAGAATACACGTAGTTCAGAGAGATT
dp4	TCTTCAACGGCCACGTGTATACTCATAGCTATAACCTG-ATATCCGAA-TGTTATTGCTTGAGAATACACGTAGTTTAACAAGATT
Per1	TCTTCAACGGCCACGTGTATACTCATAGCTATAACCTG-ATATCCGAA-TGTTATTGCTTGAGAATACACGTAGTTTAACAAGATT
Wil1	==TTTAATGGCCACGTGTATTCTTATAGCTGTAACCTG-TTATACAAAATGTTATTGCTTGAGAATACACGTAGTT-AACTAGATT
Vir3	TCTGAAATGGCCACGTGTATGCTCGTAGCTATAACCTGTACAATCAAA-TGTTATTGCTTGAGAATACACGTAGTT-AACAAGATT
Moj3	TCGGCAATGGCCACGTGTATGCTCGTAGCTATAACTGGTACAATCAAA-TGTTATTGCTTGAGAATACACGTAGTT-AGCCAGATT
Gri2	TCTGAAATGGCCACGTGTATGCTCGTAGCTATAACCTGAACAATCAAA-TGTTATTGCTTGAGAATACACGTAGTT-AACAAGATT

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miR-13a   chr3R:11243243-11243358

Species	Sequence
dm2	A-------TTCTTACGTAACTCCTCAAAGGG-TTGTGAAATGTCGACTATTAT---CTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGA--ATC--G
Sim1	G-------TTCTTACGTAACTCCTCAAAGGG-TTGTGAAATGTCGACTATTAT---CTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGA--ATC--T
Sec1	G-------TTCTTACGTAACTCCTCAAAGGG-TTGTGAAATGTCGACTATTAT---CTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGA--ATC--T
Yak2	A-------TTCTTACGTAACTCCTCAAAGGG-TTGTGAAATGTCGCCTATTAT---CTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGA--ATC--T
Ere2	A-------TTCTTACGTAACTCCTCAAAGGG-TTGTGAAATGTCGACTATTAT---CTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGA--ATT--T
Ana3	G-------TTCTTACGTAACTCCTCAAAGGG-CTGTGAAATGTTG-CCATTAT---CTACTCATATCACAGCCATTTTGATGAGTTTCGTGGGA--ATCG-T
dp4	----------CTTACGTAACCCATCAAACGG-TTGTGAAATGTTG-CATTTAT---CAAATCATATCACAGCCATTTTGATGAGTTTCGTGTGG--AATGGC
Per1	----------CTTACGTAACCCATCAAACGG-TTGTGAAATGTTG-CATTTAT---CAAATCATATCACAGCCATTTTGATGAGTTTCGTGTGG--AATGGC
Wil1	GATGGAATTTCTTACGTAACTCTTCAAGGGGGTTGTGAAATGTTG-CCATTTTATTCAACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAGTATT--C
Vir3	A-------TTCTTGCGTAACTCTTCAAGGGG-TTGTGAAATGTTG-CCGTTAT---CAAGTCATATCACAGCCATTTTGATGAGTTTCGTGCGA--ATT--G
Moj3	A-------TTCTTGCGTAACTCTTCAAGGGG-TTGTGAAATGTAG-CCATTAT---CAAGTCATATCACAGCCATTTTGATGAGTTTCGTGTGA--ATT--G
Gri2	A-------TTCTTGCGTAACTCTTCAAGGGG-TTGTGAAATGTGG-GTATTAT---CAAGTCATATCACAGCCATTTTGATGAGTTTCGTGCGA--ATT--G

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miR-13b-1   chr3R:11243109-11243217

Species	Sequence
dm2	TCTTATACCATGTCGTTAAAATGTTTGTGAACTTATGT---ATT-CAC-AATCATATCACAGCCATTTTGACGAGTTTGGGTAAAGAAA
Sim1	TCTTATACCATGTCGTTAAAATGTTTGTGAACTTATGT---ATT-CGC-AATCATATCACAGCCATTTTGACGAGTTTGGGTAAAGAAA
Sec1	TCTTATACCATGTCGTTAAAATGTTTGTGAACTTATGT---ATT-CGC-AATCATATCACAGCCATTTTGACGAGTTTGGGTAAAGAAA
Yak2	TCTTATACCATGTCGTTAAAATGTTTGTGAACTTATGT---ATT-CGC-AATCATATCACAGCCATTTTGACGAGTTTGGGTAAAGAAA
Ere2	TCTTATACCATGTCGTTAAAATGTTTGTGAACTTATGT---ATT-CGC-AATCATATCACAGCCATTTTGACGAGTTTGGGTAAAGAAA
Ana3	TCTTATACCATGTCGTTAAAAGGCTTGTGACCTTATGT---ATTTCGC-AATCATATCACAGCCATTTTGACGAGTTTGGGTAAAGAAA
dp4	TCTTATACCATGTCGTTAAAATGTTTGTGACCTTATGT---ACT-CTTGAATCATATCACAGCCATTTTGACGAGTTTGGGTACAGAAA
Per1	TCTTATACCATGTCGTTAAAATGTTTGTGACCTTATGT---ACT-CTTGAATCATATCACAGCCATTTTGACGAGTTTGGGTACAGAAA
Wil1	TCTTATACCATGTCGTTAAAATGTTTGTGACTTTATGTTGTGTC-TCT-ATTCATATCACAGCCATTTTGACGAGTTTGGGTAAAGAAA
Vir3	TCTTATACCATGTCGTTAAAATGCCTGTGACCTTATGT---ATT-TTA-TATCATATCACAGCCATTTTGACGAGTTTGGGTAAAGAAA
Moj3	TCTTATACCATGTCGTTAAAATGTCTGTGACCGTATGT---ATT-CAC-TATCATATCACAGCCATTTTGACGAGTTTGGGTAAAGAAA
Gri2	TCTTATACCATGTCGTTAAAATGCTTGTGACCTTATGT---ATT-TTA-TATCATATCACAGCCATTTTGACGAGTTTGGGTAAAGAAA

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miR-13b-2   chrX:8936430-8936540

Species	Sequence
dm2	CTGTCTATTAACGCGTCAAAATGACTGTGAGCTATGTGGATTTG-----ACT-----TCATATCACAGCCATTTTGACGAGTTTGTTG-GACAG-CC
Sim1	CTGTCTATCAACGCGTCAAAATGACTGTGAGCTATGTGGATTTG-----ACT-----TCATATCACAGCCATTTTGACGAGTTTGTTG-GGCAG-CC
Sec1	CTGTCTATCAACGCGTCAAAATGACTGTGAGCTATGTGGATTTG-----ACT-----TCATATCACAGCCATTTTGACGAGTTTGTTG-GGCAG-CC
Yak2	CTGTCTAGTAACGCGTCAAAATGACTGTGAGCTATGTGGATTTG-----ACT-----TCATATCACAGCCATTTTGACGAGTTTGCTG-----G-CC
Ere2	CTGTCTATTAGCGCGTCAAAGTGACTGTGAACTATGTGGATTTG-----ACT-----TCATATCACAGCCATTTTGACGAGTTTGTTG-----G-GC
Ana3	CTGTTTCCCAGCGCGTCGAAATGACTGTGACTTATGCGTATTTG-----ATG-----TCATATCACAGCCATTTTGACGAGTTTGGTG-GACAG-TG
dp4	CTGCACATTTACGCGTCAAAATGACTGTGAGCTATGTGTTTTTG-----ATC-----TCATATCACAGCCATTTTGACGAGTTTGATG-TGCAGTCC
Per1	CTGCACATTTACGCGTCAAAATGACTGTGAGCTATGTGTTTTTG-----ATC-----TCATATCACAGCCATTTTGACGAGTTTGATG-TGCAGTCC
Wil1	ATGTCCATGGTCGCGTCAAAATGACTGTGAGCTATGTTAACCGGTCAGAAAT-----TCATATCACAGCCATTTTGACGAGTTCGATG-GGCAT-AC
Vir3	CTCCATATTGGCGCGTCAAAATGACTGTGAGCTATGTTGTTGCA-----TTTGCCATTCATATCACAGCCATTTTGACGAGTTTGATGTGGCAG-CC
Moj3	CTCCATATTTGCGCGTCAAATTGACTGTGAGCTATGTTTATGAG-----ATTA----TCATATCACAGCCATTTTGACGAGTTTGATGTGGCAG-CC
Gri2	CTCCATATTGGCGCGTCAAATTGACTGTGAGCTATGTTGTTGCA-----GTTGTAATTCATATCACAGCCATTTTGACGAGTTTGATGTGGCAG-CC

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miR-193   chr3L:21507834-21507982

Species	Sequence
dm2	CCCTTATTATGGTTGGGATTTTTTAGATCAGCAG----TTATTGCTATATAGCCATATTTATAAATCTTCTACTGGCCTACTAAGTCCCAA-CATAATGAGAGTA
Sim1	CCCCCATTATGGTTGGGATTTTTTAGATCAGCAG----TTATTGCTATATAGCCATATTTATAAATCTTCTACTGGCCTACTAAGTCCCAA-CATAATGAGAGTA
Sec1	CCCCCATTATGGTTGGGATTTTTTAGATCAGCAG----TTATTGCTATATAGCCATATTTATAAATCTTCTACTGGCCTACTAAGTCCCAA-CATAATGAGAGTA
Yak2	CCCCCATTATGGTTGGGATTTTTTAGATCAGCAG----TTATTGCTATATAGCCATATTTATAAATCTTCTACTGGCCTACTAAGTCCCAA-CATAATGAGAGTA
Ere2	CCCCCATTATGGTTGGGATTTTTTAGATCAGCAG----TTATTGCTACATAGCCATATTTATAAATCTTCTACTGGCCTACTAAGTCCCAA-CATAATGAGAGTA
Ana3	CCCCCATTATGGTTGGGATTTTTTAGATCAGCAG----TTATTGCTATATTGCCATATTCATAAATTCTCTACTGGCCTACTAAGTCCCAA-CATAATGAGAGTA
dp4	CACCCATTATAGTTGGGATTTTTTAGATCAGCAG----TTATTGCTATACAGCCGTATTAATAAATCTTCTACTGGCCTACTAAGTCCCAA-CATAATGAGAGTA
Per1	CACCCATTATAGTTGGGATTTTTTAGATCAGCAG----TTATTGCTATACAGCCGTATTAATAAATCTTCTACTGGCCTACTAAGTCCCAA-CATAATGAGAGTA
Wil1	CGCCCATTATGGTTGGGATTTTTTAGATCAGCAG----TTATTGCTACAAGTCAAAAATTTATTATCATCTACTGGCCTACTAAGTCCCAA-CATAATGAGAGTA
Vir3	CTCCCATTATA-TTGAGACTTAGTAGGCCAGTAGAAGATTTACGATACATATATATA-TCAATAA----CTGCTGATCTAAAAAATCCCAACTATAATGAGGGCA
Moj3	CCCTCATTATAGTTGGGATTTTTTAGATCAGCAG----TTATTGATAAATAT---TA-TCATAAGTTCTCTACTGGCCTACTAAGTCTCAA-TATAATGGGAGTA
Gri2	CCCTCATTATAGTTGGGATTTTTTAGATCAGCAG----TTATTGATAAAGACCTTTA-TCGTAAATCTTCTACTGGCCTACTAAGTCCCAA-TATAATGGGAGTA

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miR-219   chr3L:17280244-17280384

Species	Sequence
dm2	GATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGA-TATTCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAG
Sim1	GATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGA-TATTCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAG
Sec1	AATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGA-TATTCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAG
Yak2	GATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGA-TATTCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAG
Ere2	GATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGA-TATTCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAG
Ana3	AATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGA-ATTCAAATACTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATACG
dp4	GATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGA-TATCCAATACTCAAGGGTTGTGACTGGACATCGCGGCTCGAAATAAG
Per1	GATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGA-TATCCAATACTCAAGGGTTGTGACTGGACATCGCGGCTCGAAATAAG
Wil1	GATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGA-TTTCAAATACTCAAGGGTTGCATCTGGGCATCGCGGCTCGAAATAAG
Vir3	GATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGA-TTTCAAATACTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATGAG
Moj3	GATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATTTTTAAATACTCAAGGGTTGCATCTGGGCATCGCGGCTCGAAATGAG
Gri2	GATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGA-TTTCAAAAACTCAAGGGTTGCATCTGGGCATCGCGGCTCGAAATGAG

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miR-279   chr3R:25041286-25041426

Species	Sequence
dm2	ACTACTGTTTTTAGTGGGTGGGGGTCCAGTGTTTCACATT-GATTTTCTTAGTATTTGTGACTAGATCCACACTCATTAATAACGGTAGTTC
Sim1	ACTGCTGTTTTTAGTGGGTGGGGGTCCAGTGTTTCACATT-GATTTTCTTAGTATTTGTGACTAGATCCACACTCATTAATAACGGTAGTTC
Sec1	ACTGCTGTTTTTAGTGGGTGGGGGTCCAGTGTTTCACATT-GATTTTCTTAGTATTTGTGACTAGATCCACACTCATTAATAACGGTAGTTC
Yak2	ACTACTGTTTTTAGTGGGTGAGGGTCCAGTGCTTCACATT-GATTTTCTTAGTATTTGTGACTAGATCCACACTCATTAATAACGGTAGTTC
Ere2	ACTACTGTTTTTAGTGGGTGGGGGTCCAGTGTTTCACATT-GATTTTCTTAGTATTTGTGACTAGATCCACACTCATTAATAACGGTAGTTC
Ana3	ACTACTGTTTTTAGTGGGTGAGGGTCCAGTGTTTCACATT-GATTTCT---GTATTTGTGACTAGATCCACACTCATTAATAACGGTAGTTC
dp4	ACTACTGTTTTTAGTGAGTGAGGGTCCAGTGTTTCACATT-GATTTTCTTAGTATTTGTGACTAGATCCACACTCATTAATAACGGTAGTTC
Per1	ACTACTGTTTTTAGTGAGTGAGGGTCCAGTGTTTCACATT-GATTTTCTTAGTATTTGTGACTAGATCCACACTCATTAATAACGGTAGTTC
Wil1	actactGTTTTTAGTGAGTGAGGGTCCAGTGTTTCACATT-AAATAT-TTAGTATTTGTGACTAGATCCACACTCATTAATAACGGTAGTTC
Vir3	ACTACTGTTTTTAGTGAGTGAGGGTCCAGTGTTTCACATTCGTTTTTTCAAGTATTTGTGACTAGATCCACACTCATTAACAACGGTAGTTC
Moj3	ACTACTGTTTTTAGTGAGTGAGGGTCCAGTGTTTCACATT-GTTTGCTTAAGTATTTGTGACTAGATCCACACTCATTAAAAACGGTAGTTC
Gri2	ATTACTGTTTTTAGTGGGTGAGGGTCCAGTGTTTCACATT-GTTTATTT--GTATTTGTGACTAGATCCACACTCATTAAAAACGGTAGTTC

---

miR-286   chr2R:15176264-15176404

Species	Sequence
dm2	TTAAAATTGAATGGCGAATGTCGGTATGGTCTCTTTTTCAAA-GAAA-------GGTTTCGAT--TAAGC--------GAAGTGACTAGACCGAACACTCGTGCTATAATTTTAAAA
Sim1	TTAAAATTGAATGGCGAATGTCGGTATGGTCTCTTTTTCCAAAGAAA-------GGTTTCGAT--CAAGC--------GAAGTGACTAGACCGAACACTCGTGCTATAATTTTAAAA
Sec1	TTAAAATTGAATGGCGAATGTCGGTATGGTCTCTTTTTCCAA-TAAA-------GGTTTCGAT--CAAGC--------GAAGTGACTAGACCGAACACTCGTGCTATAATTTTAAAA
Yak2	TTAAAATTGAATGGCGAATGTCGGTATGGTCTCTTTTTCAAA--AGA-------GGTTTCGAT--CAAGC--------GAAGTGACTAGACCGAACACTCGTGCTATAATTTTAAAA
Ere2	TTAAAATTGAATGGCGAATGTCGGTATGGTCTCTTTTTCAAA--GAA-------GGTTTCGAT--CGAGC--------GAAGTGACTAGACCGAACACTCGTGCTATAATTTTAAAA
Ana3	TTAAAATTGAATGGCGATTGTCGGTATGGTCGCTTTTTCACA--AAAAA--ATTGGTTACCAA--CAAGC--------GAAGTGACTAGACCGAACACTCGTGCTATAATTTTAAAA
dp4	TTAAAATTAAATGGCGATTGTCGGTTTGGTCGCTTTTTACCA----G-------GGTTCCGAT--CAAGC--------GAAGTGACTAGACCGAACACTCGTGCTATAATTTTAGAA
Per1	TTAAAATTAAATGGCGATTGTCGGTTTGGTCGCTTTTTACCA----G-------GGTTCCGAT--CAAGC--------GAAGTGACTAGACCGAACACTCGTGCTATAATTTTAGAA
Wil1	TTAAAATTGAATGGCGATTGTCGGTATAGTCTCTTTTTCCAA--AAATCTTGTTTGTTTTTGC--CAATCTA-ATAAGAAAGTGACTAGACCGAACACTCGTGCTATAATTTTAAAA
Vir3	TTAAAATTAAATGGCGATTGTCGGTATGGTCGCTTTTTCAAA--CAA-------TATACCA----TTATCTATAT---AAAGTGACTAGACCGAACACTCGTGCTATAATTTTAAAA
Moj3	ttaaaattaaatGGCGATTGTCGGTATGGTCTCTTTTTCAAC--ATA-------TACACCAAA--CATTCTATAT---AAAGTGACTAGACCGAACACTCGTGCTATAATTTTAAAA
Gri2	TTAAAATTAAATGGCGATTGTCGGTATGGTCGCTTTTG-AAC--CTA-------AACTCTATATACAATATATAT---AAAGTGACTAGACCGAACACTCGTGCTATAATTTTAAAA

---

miR-2a-1   chr2L:19565805-19565921

Species	Sequence
dm2	ATTCATGCTGGGCTCTCAAAGTGGTTGTGAAATGCATT-TC----CGCTTTGCGCGGCATATCACAGCCAGCTTTGATGAGCTTAGCGTAATGTA
Sim1	ATTCATGCTGGGCTCTCAAAGTGGTTGTGAAATGCATT-TC----CGCTTTGCGCGGCATATCACAGCCAGCTTTGATGAGCTTAGCGTAATGTA
Sec1	ATTCATGCTGGGCTCTCAAAGTGGTTGTGAAATGCATT-TC----CGCTTTGCGCGGCATATCACAGCCAGCTTTGATGAGCTTAGCGTAATGTA
Yak2	ATTCACGCTGGGCTCTCAAAGTGGTTGTGAAATGCATT-TC----CGCTTTGCGCGGCATATCACAGCCAGCTTTGATGAGCTTAGCGTAATGTA
Ere2	ATTCATGCTGGGCTCTCAAAGTGGTTGTGAAATGCATA-TC----AGCTTTGCGCGGCATATCACAGCCAGCTTTGATGAGCTTAGCGTAATGTA
Ana3	ATTCCTGCTGGGCTCACAAAGTGGTTGTGAAATGCATT-TC----CATTTTGCCCG-CATATCACAGCCAGCTTTGATGAGCTTAGCGTTATGTA
dp4	ATTCATGCTGGGCTCACAAAGTGGTTGTGAAATGCATT-TT-----GCTTTGCCCG-CATATCACAGCCAGCTTTGATGAGCTCGGCGTAATGTA
Per1	ATTCATGCTGGGCTCACAAAGTGGTTGTGAAATGCATT-TT-----GCTTTGCCCG-CATATCACAGCCAGCTTTGATGAGCTCGGCGTAATGTA
Wil1	ATTCATGCTGAGCTCACAAAGTGGTTGTGAAATGCATTATT----TGCTTTATCCAGCATATCACAGCCAGCTTTGATGAGCTCTGCGTAATGTG
Vir3	ATTCATGCTGCGCTCTCAAAGTGGTTGTGAAATGCATT-T--GAAAGCTTTGCGCG-CATATCACAGCCAGCTTTGATGAGCTTAGCGTAATGTC
Moj3	ATTCATGCTGAGCTCTCAAAGAGGCTGTGAAATGCATT-TT-GAAAGCTTTGCGAG-CATATCACAGCCAGCTTTGATGAGCTTAGCGTAATGTA
Gri2	ATTCATGCTGCGCTCTCAAAGTGGTTGTGAAATGCATT-TTTGAAAGCTTTGCGCG-CATATCACAGCCAGCTTTGATGAGCTTAGCGTAATGTA

---

miR-2b-1   chr2L:8258595-8258712

Species	Sequence
dm2	AAAACTTCAACTGTCTTCAAAGTGGCAGTGACATGTTG------TCAACAATATTCATATCACAGCCA-GCTTTGAGGAGCGTTGCGGTTTTTC
Sim1	AAAACTTCAACTGTCTTCAAAGTGGCGGTGACATGTTG------TCAACAATATTCATATCACAGCCA-GCTTTGAGGAGCGTTGCGGTTTTTC
Sec1	AAAACTTCAACTGTCTTCAAAGTGGCGGTGACATGTTG------TCAACAATATTCATATCACAGCCA-GCTTTGAGGAGCGTTGTGGTTTTTC
Yak2	AAAACTTCAACTGTCTTCAAAGTGGCGGTGACATGTTG------TCAACAATATTCATATCACAGCCA-GCTTTGAGGAGCGTTGCGGTTTTTC
Ere2	AAAACTTCAACTGTCTTCAAAGTGGCGGTGACATGTTG------TCAGCAATATTCATATCACAGCCA-GCTTTGAGGAGCGTTGCGGTTTTTC
Ana3	GGAACTGCGACCCTCCTTAAAGTGGCGGTGACATGTAG------CTTTCA-TATTCATATCACAGCTTTGCTTTCAGGAGCGTTGAGGTTTCTC
dp4	AAAGCTGCGACGCTCTTCAAAGTGGTTGTGAAATGTTTGCCTTTTTATGCCTATTCATATCACAGCCA-GCTTTGAGGAGCGACACGATGCTC-
Per1	AATGCTGCGACGCTCTTCAAAGTGGTTGTGAAATGTTTGCCTTTTTATGCCTATTCATATCACAGCCA-GCTTTGAGGAGCGACACGATGCTC-
Wil1	--AGAATTTATGATAGTTTTAATCATGGTTTGAGTCAAA-----ATTAA------ACAAAAATAGTTTAAATAAAAGCAA-ATAT---------
Vir3	==============================================================================================
Moj3	--AAACTGTTTTACTCTATTTTAACTCCC---GAAAGTAGGCTCTATTA------TCTAAAGT--CGTACATTAAATTTT-GTTTAGTATACCT
Gri2	--GAAATTCTTGGTTTTCTTTTGTTTATC---GGGAAAA-----TGTTA------TATAAACC--TATATATC----TTT-ATCT-------CT

---

miR-2c   chr3R:11243445-11243587

Species	Sequence
dm2	TTACTTTCAATGTCATCAAAAAGGGCTGAAGAAAGATATTTCTGCATTTGAATCGTATCACAGCCAGCTTTGATGGGCATTGCAATG
Sim1	TTACTTTCAATGTCATCAAAAAGGGCTGAAGAAAGATATTTCTGCATTTGAATCGTATCACAGCCAGCTTTGATGGGCATTGCAATG
Sec1	TTACTTTCAATGTCATCAAAAAGGGCTGAAGAAAGATATTTCTGCATTTGAATCGTATCACAGCCAGCTTTGATGGGCATTGCAATG
Yak2	TTACTTTCAATGTCATCAAAAAGGGCTGAAGAAAGATATTTCTGCATTTGAATCGTATCACAGCCAGCTTTGATGGGCATTGCAATG
Ere2	TTACTTTCAATGTCATCAAAAAGGGCTGAAGAAAGATATTTCTGCATTTGAATCGTATCACAGCCAGCTTTGATGGGCATTGCAATG
Ana3	TTACTTTCAATGTCATCAAAAAGGGCTGAAGA--GATATTTCTGCATTTGAAGTGTATCACAGCCAGCTTTGATGGGCATTGCAATA
dp4	TTACTTTCAGTGTCATCAAAAATGGCTGAAGAAAGATATATTTGCATTTGAAGCGTATCACAGCCAGCTTTGATGGGCATTGCAATG
Per1	TTACTTTCAGTGTCATCAAAAATGGCTGAAGAAAGATATATTTGCATTTGAAGCGTATCACAGCCAGCTTTGATGGGCATTGCAATG
Wil1	TTACTTTCAATGTCATCAAAAAGGGCTGAAGAAAGATATTTTTGCATTTGAAGCGTATCACAGCCAGCTTTGATGGGCATTGCAATG
Vir3	TTACTTTCAATGTCATCAAAAAGGGCTGA-GAATGATATATCTGCAATTGAATCGTATCACAGCCAGCTTTGATGGGCATTGCAAAG
Moj3	TTACTTTCAGTGTCATCAAAAAGGGCTGA-GAATGATATTTCTGTAATTGAATTGTATCACAGCCAGCTTTGATGGGCACTGCGAAG
Gri2	TTACTTTCAATGTCATCAAAAAGGGCTGA-GAATGATATATCTGCAATTGAATCGTATCACAGCCAGCTTTGATGGGCATTGCAAAG

---

miR-3   chr2R:15176437-15176546

Species	Sequence
dm2	GTCCCGATCCTGGGATGCATCTTGTGCAGTTATGTTTCAA-----T---------CTCA------CATCACTGGGCAAAGTGTGTCTCAAGATCCTGGCCA
Sim1	GTCCCGATCCTGGGATGCATCTTGTGCAGTTATGTTCCAA-----T---------CTCA------CATCACTGGGCAAAGTGTGTCTCAAGATCCTGGCCA
Sec1	GTCCCGATCCTGGGATGCATCTTGTGCAGTTATGTTTCAA-----T---------CTCA------CATCACTGGGCAAAGTGTGTCTCAAGATCCTGGCCA
Yak2	GTCCTGATCCTGGGATGCATCTTGTGCAGTCATGTTTCCA-----T---------CTCA------CATCACTGGGCAAAGTGTGTCTCAAGATCTTGGCCA
Ere2	GTCCTGATCCTGGGATGCATCTTGTGCAGTTATGTTTCTA-----T---------CTCA------CATCACTGGGCAAAGTGTGTCTCAAGATCCTGGCCA
Ana3	GCTACGATCTTGGGACGCATTTTGTGCAGTTATGCACCAAAAATAT---------ATC-------CATCACTGGGCAAAGTGTGTCTCAGGATCTTGGCCA
dp4	GCAACGATCCTGGGATGCATTTTGTGCAGTTATGTCTACG-----TG----ATCATCCT------CATCACTGGGCAAAGTGTGTCTCAGGATTGCAGCCC
Per1	GCAACGATCCTGGGATGCATTTTGTGCAGTTATGTCTACG-----TG----ATCATCCT------CATCACTGGGCAAAGTGTGTCTCAGGATTGCAGCCC
Wil1	ACCATGATTTTGGGATGCATTTTGTGCAGTTATGTCTTCA-----TGTGATAATTCTCT------CATCACTGGGCAAAGTGTGTCTCATAATTTTGGTAA
Vir3	GCTCTGCTTTTGGGATGCATTTTGTGCGGTTATGTCTGCC----------------TCCAAAACCCATCACTGGGCAAAGTGTGTCTCAAAATTGTGGCTA
Moj3	GCTCTACTTTTGGGATGCATTTTGTGCAG--ATGTCTAAC-----G---------ATTGGAAACCCATCACTGGGCAAAGTGTGTCTCAAAATTGGGGCAA
Gri2	GCTCTGCTTTTGGGATGCATTCTGTACAGTAATGT-TGAC-----T---------CTTGTAAAACCATCACTGGGCAAAGTGTGTCTCAAAATTGTGGCAA

---

miR-306   chr2L:16694312-16694437

Species	Sequence
dm2	CCAC-TCGATGGCTCAGGTACTTAGTGACTCTCAA--------TGCTTTTGACAT---T-TTGGGGGTCACTCTGTGCCTGTGC-----TGCCAGTGGGAC
Sim1	=====================================================================================================
Sec1	CCAC-TCGATGGCTCAGGTACTTAGTGACTCTCAA--------TGCCTTTGACAT---T-TTGGGGGTCACTCTGTGCCTGTGC-----TGCCAGTGGGAC
Yak2	CCAC-TCGGTGGCTCAGGTACTTAGTGACTCTCAA--------TGCTTTTGACAT---T-TTGGGGGTCACTCTGTGCCTGTGC-----TGCCAGTAGGAC
Ere2	CCAC-TCGGTGGCTCAGGTACTTAGTGACTCTCAA--------TGCTTTTGACAT---T-TTGGGGGTCACTCTGTGCCTGTGC-----TGCCAGTGGGAC
Ana3	CCAC-TTGGTAGCTCAGGTACTTAGTGACTCTCAA--------TGCATTTGACAT---T-TTGGGAGCCACTTTGTGCCTGGGC-----CATCAGTGCGAC
dp4	ACACTTTGCCGGCTCAGGTACTTAGTGACTCTCAA--------TGCTTTCGACAT---C-TTGAGAGTCTCTCTGTGCCTGCAC-----TGGCGGTGGTGC
Per1	ACACTTTGCCGGCTCAGGTACTTAGTGACTCTCAA--------TGCTTTCGACAT---C-TTGAGAGTCTCTCTGTGCCTGCAC-----TGGCGGTGGTGC
Wil1	TGCC-TAAACAGCTCAGGTACTTAGTGACTCTCAA--------AGAATAT-ATATAGAC-TTGAGAGACGCTCTGTACCTAGACTGTTGTGTCTGCGGAAT
Vir3	ACAC-CCCGCTGCTCAGGTACTTAGTGACTCTCAATCATCTATTGCTTTGCATAC---C-TTGAGGGTCGCTCTGTGCCTGTGC-----CGCCTGTGCTGC
Moj3	ACAC-GCTGCAGCTCAGGTACTTAGTGACTCTCAATCACATATTGCTTTGCATAC---T-TTGAGGGTCGCTCTGTGCCTGTGC-----CGCCCGTGTTGC
Gri2	ACAC-GTTGCTGCTCAGGTACTTAGTGACTCTCAATTCAACATTGTATTGCACGC---CTTTGAGGGTCGCTCTGTGCCTGTGT-----TGCACGTGTTGC

---

miR-309   chr2R:15176548-15176657

Species	Sequence
dm2	ATAG----CAATTATACGACAAACCTTGTTCGGTTTTGCCA----------------ATTTCCAAGC-------CAGCACTGGGTAAAGTTTGTCCTATAATCCC--GAAAC
Sim1	ACAG----CAATTATACGACAAACCTTGTTCGGTTTTGCCA----------------ATTTCCAAGC-------CAGCACTGGGTAAAGTTTGTCCTATAATCCC--GAAAC
Sec1	ACAG----CAATTATACGACAAACCTTGTTCGGTTTTGCCA----------------ATTTCCAAGC-------CAGCACTGGGTAAAGTTTGTCCTATAATCCC--GAAAC
Yak2	ACAG----CAATTATACGACAAACCTTGTTCTGTTTTGCCA----------------ATTTCCTAGC-------CAGCACTGGGTAAAGTTTGTCCTATAATCCC--GAAAC
Ere2	ACAG----CAATTATACGACAAACCTTGTTCGGTTTTGCCA----------------ATTTCCTAGC-------CAGCACTGGGTAAAGTTTGTCCTATAATCCC--GAAAC
Ana3	TCA--------TTATACGACAAACCTTGTTCGGTTTTGCCA----------------ATTTCCTAGC--------AGCACTGGGTAAAGTTTGTCCTATAATCTATAAAAAA
dp4	ACT-------ATTATACGATAAACTTTGTTCAGTTTTGCCA----------------ACTTGCTTGC--------AGCACTGGGTGAAGTTTGTCTTATAATCCC--ACAGT
Per1	ACT-------ATTATACGATAAACTTTGTTCAGTTTTGCCA----------------ACTTGCTTGC--------AGCACTGGGTGAAGTTTGTCTTATAATCCC--ACAGT
Wil1	TAA------TATTATATGATAAACTTTGTTCAGTTTTGCAATCAAAAAATCAAGAAAATTCCTTAGC--------ATCACTGGGTGAAGTTTGTCTTATAATCTT--TAAAC
Vir3	ACAA----ATATTATATGGTAAACTTTGTTCAGTTTTGCCA----------------GGCTCT-TTTTGTGCG-CATCACTGGGTGAAGTTTGTCGTATAATCGC--AAAAA
Moj3	AGAACAGAATATTATAAGGTAAACTTTGTTCAGTTTTGCCG----------------GGTTCTATGTTGTGCG-CATCACTGGGTGAAGTTTGTCGTATAATCG---AAACG
Gri2	ATTA-----CATTATATGGCAAACCTTGTTCAGTTTTGACA----------------ACTTTGTTTCTGTGCATCATCACTGGGTGAAGTTTGTCGTATAATCG---AAATG

---

miR-310   chr2R:16098594-16098723

Species	Sequence
dm2	A------TAAACATTTGCAGGGC-GGGTCGTGTGTCAGTGTATTTATATCTTAGC--T----------------A--------------TATTGCACACTTCCCGGCCTTTAAATGTC-------------CAATG
Sim1	A------TAAACATTTGCAGGAC-GGGTCGTGTGTCAGTATATTTACTTCTTAGC--T----------------A--------------TATTGCACACTTCCCGGCCTTTAAATGTC-------------CAATG
Sec1	A------TAAACATTTGCAGGAC-GGGTCGTGTGTCAGTGTATTTACTTCTTAAC--T----------------A--------------TATTGCACACTTCCCGGCCTTTAAATGTC-------------CAATG
Yak2	A------CAAACATTTGCAGGAC-GGGTCGTGTGGCAGTGTATTGATTTCTTAGC--T----------------A--------------TATTGCACACTTCCCGCCCTTTAAATGTC-------------CAGTG
Ere2	A------CAAATATTTGCAGGAC-GGGTCGTGTGTCAATGTATTGATCTCTTAGC--T----------------A--------------TATTGCACACTTCCCGCCCTTTAAATGTC-------------CAGTG
Ana3	A------TAAACACTTGCAGGAC-GGGGAGCGTGACAATATATATATTTTATAAACAT----------------A--------------TATTGCACACCTCCCGGCCTATAAGTGTA--------------AATG
dp4	A------CCAACATTTGTGCGTCTAAGATCTGTG-CAGTATATACATACATAGAA--T----------------A---------CAAAATATTGCAGACTTCTCAGACTACAAATGTG-------------AACTG
Per1	A------CCAACATTTGTTCGTCTAAGTTCTGTG-CAGTATATACATACATAGTT--T----------------A---------AAAAATATTGCACACTTCTCAGACTACAAATGTG-------------AACTG
Wil1	AAATTTTCAAACATTCTTTGGAC--GGACTTGTC-AAATATGTTTGGATATAAAA--TTCAACAATTGGACAACA--------------TATTGATCAAAACCGGGCCAAAAATTGTTGGAAAATTCTTCAAAGTT
Vir3	G------TAATCATTTTTAGGCC-GTGCTCTGTGTGAATATGTT-----TTTAAC--T----------------A--------TAATCATATTGCACATCTCCCGGCCTATAAGTG-T-------------AGATG
Moj3	G------TATCCATTTTTAGGCC-GTGCTATGTGACAATATGTA-----TTTAAA--T----------------TGT----ATTTATCATATTGCACATCTCCCGGCCTACAAGTG-T-------------AAATG
Gri2	-----------------CAGGAT-GGAAGCTGTGACAATATGTAGG--TTTTAAT--T----------------AATTTATATTTCATATATTGCACACCTCCCGGCCTATAAATG====================

---

miR-311   chr2R:16098719-16098843

Species	Sequence
dm2	TAGAT-----CATTTTTCGGACGGTATATGGGTTAATATTTCATTTG------------T--CGAATATATTGCACATTCACCGGCCTGAAA---------------------A----TA-------TCAAGAA
Sim1	TAGAT-----CATTTTTCGGACGGTATATGAGTCAATATTTTTTTTT------------TTTCGAATATATTGCACATTCACCGGCCTGAAA---------------------A----TA-------TCAAGAA
Sec1	TAGAT-----AATTTTTCGGACGGTATATGAGTCAATGTTTTCTTTT------------T--CGAATATATTGCACATTCACCGGCCTGAAA---------------------A----TA-------TCAAGAA
Yak2	TAGAT-----AGTTTTGCGGACGGTATCTGCGTCAATATTTCCTTGT------------T--AGAATATATTGCACATTCACCGGCCTGAAA---------------------A----TA-------TCAAGGA
Ere2	TAGAT-----AGTTTTTCGGACGGTATCTGCGTCAATATTTCCTTGT------------T--AGAATATATTGCACATTCACCGGCCTGAAA---------------------A----TA-------TCAAGGA
Ana3	CAGAT-----TATCTTCAGGACGGTATTTGTGTCAATATGG-ATATT------------T--CAAACATATTGCACTTATACCGGCCTGATG---------------------A----TC-------TCCGGCG
dp4	TTGAT--------TTGTAGGCCGTGGTTCTTGCAAATACGG---ATT------------C--ATAACGTATTGCACTAGCCCCGGTCCAAAA---------------------AACAATA-------GCAA-CG
Per1	======================================================================================================================================
Wil1	TAGGC--------TTCGGGGTTGTTGCA-----AAATGGTTTATTCT------------A--ATAACTCCCCATATTGCACCTTTTCCGGCCTCTAA---------------------A-------------TT
Vir3	TCCGCATGACCATTTTAAGGACGGTATTTGTGACAATATGTGCAGTT-AAATCAATTTGT--TTAGCATATTGCACATCTCCCGGCCTAAAAATGAACCGTGCTCTCTTCGATA----TA-------TGGAACA
Moj3	TCAGC-TG--CGTTTGCAGGACGGTATTTGTGACAATATGAATTATTGAAATCAATTTAT--TCAGCATATTGCACATCTCCCGGCCTATAAAACAGTTGTGAGCCCGTCGATT----TAAATGATTTGTGTAT
Gri2	GCAGTTCG--TGTTT-------AGTGTTTTTTCCCGC----------------------T--TAAGC-----ATCTTGCAATTTATATGGCTTGCAG---------------------T----TA-------TC

---

miR-312   chr2R:16098898-16099004

Species	Sequence
dm2	TTTGAAGCGATTTGGTTCGTCACAAGGGCAATTCTGCATTTTT---TAACTAGTATTGCACTTGAGACGGCCTGATTACTTTAAAAC
Sim1	TTTAAAGCGTTTTGGTTCGTCACAAGGGCAATTCTGCATTTTT---AAACTTGTATTGCACTTGAGACGGCCGAATTACTTTAAAAA
Sec1	TTTAAAGCGTTTTGGTTCGTCACAAGGGCAATTCTGCATTTTT---AAACTTGTATTGCACTTGAGACGGCCGAATTACTTTAAAAA
Yak2	TTTGAAGCGCTTCGGTTCGTCCCAGGAGCAATTCTGCACTATTA--AAGCTAGTATTGCACTTGAGACGGCCGGATTACTTTTAAAC
Ere2	TTTGAAGCGCTTCGGTTCGTACCAGGAGCAATTCTGCATTTTTTTTAAGCTAGTATTGCACTTGAGACGGCCGGATTACTTTTAAAC
Ana3	CTTTTTAAAAAAAACATCTACAATTTTCC-GGTGCGTCTCTAGTGCAACTCTTGGTTTT-TT--ATACAAGTATTGCACTTGAGACG
dp4	==========================================GGGCAATACTGTGTTGTATT--TCACCAGTATTGCACACCCACTG
Per1	--------GTGTACAAGCGGAA---------------------GGGTGCATCGAGCTGC-TT--TGATTTGTA-------------G
Wil1	---------CATAAACTCGAAAATTTTTTAGGTTCGTTTAGTCTGCAAATTGTAATATA-CG--AAAATA--ATTGCACACTTCACG
Vir3	------------------------------------------------AGCTATATTTT-TC--AGGCCGTGTC-------------
Moj3	------------------------------------------------GTCTGCAATTT-----AAGCTTCTT--------------
Gri2	------------------------------------------AAGCAAATCTTCAGTTT-TT--CGGCTGTGGT-------------

---

miR-313   chr2R:16099032-16099143

Species	Sequence
dm2	CCAACAATT---TTCTGCTGCGGATGGGGGCAGTACTGTTTTTTT-----AACATTGAGTATTGCACTTTTCACAGCCCG-----AAAATGTTAGCAA
Sim1	CCAACAATT---TTCTGCTGCGCATTGGGGCACTACTGTTTTTTT-----TAAATTGAGTATTGCACTTTTCACAGCCTT-----AAAATGTTAGCAA
Sec1	CCAACAATT---TTCTGCTGCGCATTGGGGCACTACTGTTTTTTT-----TTAATTGAGTATTGCACTTTTCACAGCCTT-----AAAATGTTAGCAA
Yak2	CCAACAATT---TTCGGCTGTGGATTGGGCTAGTACTGTGATTTT-----AGCATTAAGTATTGCACATTCCCCAGCCTG-----AAAGTGTTAGTAA
Ere2	CCAACAATT---TTCGGCTGTGGAGTGGGCTAGTACTGTGATTTT-----AACATTGAGTATTGCACATTCCCCAGCCTG-----AAAGTGTTTGCAT
Ana3	TCAGCATTT---CCAGACTGTGGTTTGGGCAGATACTAC-ATTTT-----AGGATC-AGTATTGCACATTCCCCAGCCTG-----GAAACGCTTGCGA
dp4	==================================================================================================
Per1	TGGATACCT---TCAAGCTGGGGGATGGG-CAATACTGTGTTGTA-----TTTGAACAGTATTGCACACCCACTGGCCTG-----AAAGTGCCTACTG
Wil1	TCCAAATTTAGTTCTGGCTGCGGTTTGTGCAAATTACTT-ATTTT-----TTTGTAAAGTATTGCACAACCTACAGCCTGGCACTAAATGGAGAAAAA
Vir3	=======TT---TTCGGCTGTGGTCAGTGTCAATTCTTTTTTTTTATTTTTACA---AGTATTGCACTTTTCACGGCCGG-----AAAAAT--TGAGA
Moj3	TTCGT--TT---TCCGGTTGTGAATTGTGTCAATTCTTTTTATTT-----TACA---AGTATTGCACTTTTCACGGCCGG-----AAAAAGGATAAAA
Gri2	CATTATCCCGAACAATC---CGCGCTCGGCTTTAGAATTTGTTCCTTATTTTG-----TGAG---GATAATTTACAATTCGAAGATAATATTGGCAGG

---

miR-314   chr3L:11746938-11747068

Species	Sequence
dm2	CGCACTCTTATCGTAACTTGTGTGGCTTCGAACTTACCTAGTTGAG----GAAAA-CTCCCATG-TCGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAATTCGC
Sim1	CGCACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAG----GAAAA-GTCCCGTG-TCGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAATTCGC
Sec1	CGCACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAG----GAAAA-GTCCCGTG-TCGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAATTCGC
Yak2	CGCACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAG----GAAAA-ACCCCATG-TCGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAATTCGC
Ere2	CGCACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAG----GAAGA-ATCCCATG-TCGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAATTCGC
Ana3	CGCACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAG----GAAAA-AT--CAGT-TTGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAATTCGC
dp4	CGCACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAG----GAAAA-CTCCGAAA-T-GGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAAATCGC
Per1	CGCACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAG----GAAAA-CTCCGAAA-T-GGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAAATCGC
Wil1	CGTACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAG----GAAAA-ATTCAATG-TTGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAATTCGC
Vir3	CGTGCTCTTATCGTAACTTGTGTGGCTT-GAATGTACCTGGTTGAG----GAACGAATTCAACGTTTGGATTTTGTTGCCTTTGGTATTCGAGCCAATAAGTTCGGCCACCGGTTCAC
Moj3	CGGGCTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTCGTCGAGCGAAAAGCGAATTCATTG-TTGGATTTTGTTGCTCTTGGTATTCGAGCCAATAAGTTCGGCAACCAGTTCGC
Gri2	CCAGCTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTGGCTAAG----GAAAG----------TTGGATTT------CCTAGGTATTCGAGCCAATAAGTTCGGCAGCGGGTTCGC

---

miR-315   chr3L:18826209-18826333

Species	Sequence
dm2	ACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTCATTG-TTTACC---AGTTGGCTTTCGAGCAATAATTGAAACCAGATAAGTGATC
Sim1	ACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTATTG-TTTACC---AGTTGGCTTTCGAGCAATAATTGAAACCAGATAAGTGATC
Sec1	ACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTATTG---TACC---AGTTGGCTTTCGAGCAATAATTGAAACCAGATAAGTGATC
Yak2	ACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTACTA-TTTAAC---AGCTGGCTTTCGAGCAATAATTGAAACCAGATAAGTGATC
Ere2	ACACTTATATAATTTTGATTGTTGCTCAGAAAGCCC-TATTA-TCTAAC---AGCTGGCTTTCGAGCAATAATTGAAACCAGATAAGTGATC
Ana3	ACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTTATAA-ATTATT---AGCTGGCTTTCGAGCAATAATTGAAACCAAATAAGTGATC
dp4	ACACTTATCTATTTTTGATTGTTGCTCAGAAAGCCCTTATAA-TTAACC---AGTTGGCTTTCGAGCAATTATCAAAGCCAAATAAGTGATC
Per1	ACACTTATCTATTTTTGATTGTTGCTCAGAAAGCCCTTATAA-TTAACC---AGTTGGCTTTCGAGCAATTATCAAAGCCAAATAAGTGATC
Wil1	ACACTTATATAATTTTGATTGTTGCTCAGAAAGCCCTCATTACTTTATC---AGTTGGCTTTCGAGCAATAATTGAAACCAAATAAGTGAGC
Vir3	ACGCCTATATCATTTTGATTGTTGCTCAGAAAGCCCTGC--A-TTCAAT---ACTTGGCTTTCGAGTAATAATCGAAACCAAATAAGCGATC
Moj3	ACCCTTATATAATTTTGATTGTTGCTCAGAAAGCCCGTA--A-TTTAACTTAACATGGCTTTCGAGTAATAATCGAAACCAAATAAGGCATC
Gri2	ACGCTCATATAATTTTGATTGTTGCTCAGAAAGCCTTTC--A-CTTGAC---ACTTGGCTTTCGAGTAATAATCGAAACCAAATAAGCGATC

---

miR-318   chr3R:6234003-6234111

Species	Sequence
dm2	TTTCAGTTTATGGGATACACACAGTTCAGTTTTGTCACAC-TT-CAAGCATCACTGGGCTTTGTTTATCTCATGAGAGCGAAAT
Sim1	TTTCAGTTTATGGGATACACACAGTTCAGTTTTGTCACAC-TT-TAAGCATCACTGGGCTTTGTTTATCTCATGAGAGCGAAAT
Sec1	TTTCAGTTTATGGGATACACACAGTTCAGTTTTGTCACAC-TT-CAAGCATCACTGGGCTTTGTTTATCTCATGAGAGCGAAAT
Yak2	TTTCAGTTTATGGGATACACACAGTTCAGTTTTGTCGCAC-TA-CAAGCATCACTGGGCTTTGTTTATCTCATGAGAGCGAAAT
Ere2	TTTCAGTTTATGGGATACACACAGTTCAGTTTTGTCACAC-TT-CAAGCATCACTGGGCTTTGTTTATCTCATGAGAGCGAAAT
Ana3	TTTCAATTTGTGGGATACACACGGTTCAGTTGTGTCACTT-TTGCGAGCATCACTGGGCTTTGTTTATCTCATAAGACTGAAAT
dp4	TTTCAATTTATGGGATGCACCAAGTTCAGTTTTGTCACAT-TT-CGAGCATCACTGGGCTTTGTTTATCTCATAAGAGCGAAAT
Per1	TTTCAATTTATGGGATGCACCAAGTTCAGTTTTGTCACAT-TT-CGAGCATCACTGGGCTTTGTTTATCTCATAAGAGCGAAAT
Wil1	TTTTTGTTT-TGGCTCTACTGTTCTCGCTGCTGCACTTACACTTTGCTTTTTTCGC-T-TT-CGTTCGACACTGGGCTTTCTTT
Vir3	TTTCAATTTATGGGATACACCAAGTTCAGTTTTGTCAGATGTC-CAAGCATCACTGGGCTTTGTTTATCTCATAAGAGTGAAAT
Moj3	TTTCAATTTATGGGATACACTAAGTTCAGTTTTGTCAGATGTC-CAAGCATCACTGGGCTTTGTTTATCTCATAAGAGCGAAAT
Gri2	TTTCAATTTATGGGATACACCAAGTTCAGTTTTGTCAGATGTC-CAAGCATCACTGGGCTTTGTTTATCTCATAAGAGCGAAAT

---

miR-375   chr2L:857521-857652

Species	Sequence
dm2	GGGCAGCGAATTACTTGGGCCAAGGGAATGCAAACTGTG---A------TC--------------ATCCCGAAAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGTCCG
Sim1	GGGCAGCGAATTACTTGGGCCAAGGGAATGCAAACTGTG---A------TC--------------ATCCCGAAAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGTCCG
Sec1	GGGCAGCGAATTACTTGGGCCAAGGGAATGCAAACTGTG---A------TC--------------ATCCCGAAAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGTCCG
Yak2	GGGCAGCGAATTACTTGGGCCAAGGGAATGCAAACTGTG---A------T----------------GCCTAGTAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGTCCG
Ere2	GGGCAGCGAATTACTTGGGCCAAGGGAATGCAAACTGTG---A------T----------------GCCTAGTAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGTCCG
Ana3	GGGCAGCGAATTACTTGGGCCAAGGGAATTCAAACTGTG---A------TCGC-----------AATGCTAGAAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGTCCG
dp4	GGGCAGCGAATTACTTGGGCCAGGGGAATTCAAACTGTG---A------TCGC-----------AATGCAAAAAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGCCTC
Per1	AGGCAGCGAATTACTTGGGCCAGGGGAATGCAAACTGTG---A------TCGC-----------AATGCAAAAAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGCCTC
Wil1	GGGCAGCGAATTACTTGGGCCAAGGGAATTCAAACTGTG---AATTATTTCAA-----------AATGCAAAAAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGTCCG
Vir3	GGGCAGCAAATTACTTGGGCCAAGGGAATGCAAACTGTC---A------ACGC-----------ATTGCAATAAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGCCCA
Moj3	GGGCTGCGAATTACTTGGGCCAAGGGAATGCAAACTGTTCGAA------AAGC-----------ATTGCAAAAAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGCCCG
Gri2	GGGCAGCGAATTACTTGGGCCAAGTGGATGTAAACTGTG---A------AAGCGCATTTTGCATATAACAAAAAGTTTGTTCGTTTGGCTTAAGTTATTTTCATGCCCG

---

miR-6-1   chr2R:15175845-15175967

Species	Sequence
dm2	CCTTTAATGTAGAGGGAATAGTTGCTGTGC-TGTAAGTTAATATACCATATCTATATCACAGTGGCTGTTCTTTTTGTACCTAAAG-TG
Sim1	CCTTTAAAGTAGAGGGAATAGTTGCTGTGC-TGTAAGTTTATATACCGTATCTATATCACAGTGGCTGTTCTTTTTGTACCTAAAGGCA
Sec1	CCTTTAAAGTAGAGGGAATAGTTGCTGTGC-TGTAAGTTAATATACCATATCTATATCACAGTGGCTGTTCTTTTTGTACCTAAAGGCA
Yak2	CCTTTAACGTAGAGGGAATAGTTGCTGTGC-TGTAAGTTAATAACAAATATCTATATCACAGTGGCTGTTCTTTTTGTACCTAAAG-TG
Ere2	CCTTTAAAGTAGAGGGAATAGTTGCCGTGC-TGTAAGTTAATATATCATATCTATATCACAGTGGCTGTTCTTTTTGTACCTAAAG-TG
Ana3	CCTTTAAAGTAGAGAGAATAGTGGCTGTGC-TGTAAGTTT-----CAAAATCTATATCACAGTGGCTGTTCTTTTTGCACCTAAAG-TG
dp4	CCTTTGAAGTAGAGAGAATAGTTGCTGTGC-TATATGTCCTTCGACTCTAT--ATATCACAGTGGCTGTTCTTTTTGTACCTAAAG-TG
Per1	CCTTTGAAGTAGAGAGAATAGTTGCTGTGC-TATATGTCCTTCGACTCTAT--ATATCACAGTGGCTGTTCTTTTTGTACCTAAAG-TG
Wil1	CCTTTAAAGTAGAGAGAATAGTTGCTGTGT-TTTATGCCCTTT--TCAATTTCATATCACAGTGGCTGTTCTTTTTGTGCCTAAAG-TG
Vir3	CCTTTAAAGTAGAGAGAATAGACGCTGTGC-TGTATGTTT-TGCGTATGGTCTATATCACAGTGGCTGTTCTTTTTGTACCTGAAG-CG
Moj3	CCTTTAAAGTAGAGAGAATAGATGCTGTGAGTATATCTGT-TGCAT-----TTATATCACAGTGGCTGTTCTTTTTGTACCTAAAT-GG
Gri2	CCTTTAATGTAAAGAGAATAGATGCTGTGC-TGTATGTTG-AACGTATTGTCTATATCACAGTGGCTGTTCTTTTTGTACCAAAAG-TG

---

miR-6-2   chr2R:15175711-15175825

Species	Sequence
dm2	G-TTTTT--AACCCAAGGGAACTTCTGCTGCTGATATAT------TATT----------GA------------AAAA-----CT----------ACTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCC
Sim1	G-TTTTT--AACCCCAGGGAACTTCTGCTGCTGATATAT------TATT----------GA------------AAAA-----CT----------CCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCC
Sec1	G-TTTTT--AACCCCAGGGAACTTCTGCTGCTGATATAT------TATT----------GA------------AAAA-----CT----------CCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCC
Yak2	G-TTTTT--AACCGCAGGGAACCTCTGCTGCTGATATAT------TATT----------GA------------GAAA-----CT----------TCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCC
Ere2	G-TTTTT--AACCCCAGGGAACCTCTGCTGCTGATATAT------TATT----------GA-------------AAA-----CT----------CCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCC
Ana3	G-GTGTT--AGCCCCAGGGAACTGTTGCTGCTGATATAT------TATTCTCCCAAAAAAA------------AAAT-----CA----------CCTATATCACAGTGGCTGTTCTTTTTGGCTGCACCGAC
dp4	G-TGTCCCCAACCGCAGGGAACCGCTGCTGCTGATATAT------TATC----------CACCCATCT---TTGACA-----TT----------TCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCC
Per1	G-TGTCCCCAACCGCAGGGAACCGCTGCTGCTGATATAT------TATC----------CACCCATCT---TTGACA-----TT----------TCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCC
Wil1	====TTT--AACCGCAGGGAACTGTCGCTGCTGatatatatatattatt----------gttatatataatttaaaaatGATTT----------TCTATATCACAGTGGCTGTTCTTTTTGGTTTTACGATC
Vir3	G-CTTTT--AACCGCAGGGAACTGCTGCTGCTGATATAC------TGTA----------TA--------------GA-----TTATATCGAT--TCCATATCACAGTGGCTGTTCTTTTTGGTTGCATCGCA
Moj3	GATTTTT--AACCGCAGGGAACTGCTGCTGCTGATATAC------TATA----------TG--------------TA-----TT-TGTCAGTACTCTATATCACAGTGGCTGTTCTTTTTGGTTGCATCGCA
Gri2	G-CTTTT--AACCACAGGGAACTGCTGCTGCTGATATAC------AAC-----------CA--------------TA-----TT-TATACACG-ACTATATCACAGTGGCTGTTCTTTTTGGTTGCATCGCC

---

miR-6-3   chr2R:15175558-15175678

Species	Sequence
dm2	TGTACAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTTGAAAC-TCT----CACAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATC
Sim1	TGTACAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTCGAAAC-TCT----CACAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATC
Sec1	TGTACAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTCGAAAC-TCT----CACAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATC
Yak2	TGTTCAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTCGAAAC-TCT----CTCAATTTATATCACAGTGGCTGTTCTTTTTTATTTGGCAATC
Ere2	TGTTCAAAAAGAAGGGAACGGTGGCTGATGATGTAGTTCGAAAC-TCT----CACAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATC
Ana3	TGTTCAAAAAGAAGGGAACGGTCGCTGCTGATGTAGTT----AT-TCG----CATCATTTATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATC
dp4	TGTTCAAAAAGAAGGGAACGGTTGCTGCTGATGTAGTTCAAGTT-TTG----CACAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATC
Per1	TGTTCAAAAAGAAGGGAACGGTTGCTGCTGATGTAGTTCAAGTT-TCG----CACAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATC
Wil1	TGTTTAAAAAGAAGGGAACGGTTGCTGTTGATGTAGTATACCAT-TTTGTTTAACAAT--ATATCACAGTGGCTGTTCTTTTTTGTTTAACAATC
Vir3	TGTTTAAAAGGAAGAGAACGTTCGCTGTTGATGTAGTCGACCTT-TGT----ACT-CTTTATATCACAGTGGCTGTTCTTTTTTGTTTAGCAATT
Moj3	TGCTTAAAGAGAAGAGAACGTTCGCTGTTGATGTAGTCGAATTCATTT----AAT-CTTTATATCACAGTGGCTGTTCTTTTTTGTTTAACAATT
Gri2	TGTTTAAAAGGAAGAGAACGCTCGCTGCTGATGTAGTTCATGAT-TCA----AATATTTTATATCACAGTGGCTGTTCTTTTTTGTTTATCAATG

---

miR-932   chr2L:6902041-6902172

Species	Sequence
dm2	GTTTTGAAGTTTTCAATTCCGTAGTGCATTGCAGTGTGTT----TCATTATTTACTGCAAGCGCTGCGGATTTGGCAACTTTGACGACC
Sim1	GTTTTGAAGTTTTCAATTCCGTAGTGCATTGCAGTGTGTT----TAATTATTTACTGCAAGCGCTGCGGATTTGGCAACTTTGACGACC
Sec1	GTTTTGAAGTTTTCAATTCCGTAGTGCATTGCAGTGTGTT----TAATTATTTACTGCAAGCGCTGCGGATTTGGCAACTTTGACGACC
Yak2	GCTTTGAAGTTTTCAATTCCGTAGTGCATTGCAGTGTGCT----TAATTATTTACTGCAAGCGCTGCGGATTTGGCAACTTTGACGACC
Ere2	GTTTTGAAGTTTTCAATTCCGTAGTGCATTGCAGTGTCTT----TACTTATTTACTGCAAGCGCTGCGGATTTGGCAACTTTGACGACC
Ana3	GTTTCGAGACTTTCAATTCCGTAGTGCATTGCAGTGTTTT----TAAACTACAACTGCATGCTCTGCGGACTTGGCAGATTTGAAGACC
dp4	GTGTCGTGGCTCTCAATTCCGTAGTGCATTGCAGTTTAATATAATTATCAACAACTGCAAGCGCTGTGGACTTGGCAGCTCCGATAGCC
Per1	GTGTCGTGGCTCTCAATTCCGTAGTGCATTGCAGTTTAATATAATTATCAACAACTGCAAGCGCTGTGGACTTGGCAGCTCCGATAGCC
Wil1	GCATTGTAGCTATCAATTCCGTAGTGCATTGCAGTTGGTA----CTAGAAAATACTGCAAGCGCTGCGGACTTGCTAACTCTGATG---
Vir3	GCAGCGAAACTCTCAATTCCGTAGTGCATTGCAGTTGATT----TTAGGAATTACTGCAAGCGCTGCAGAATTGGCAGCTCCGCTGACC
Moj3	GCTGCGTAACTTTCAATTCCGTAGTGCATTGCAGTTGATT----TAAGGAATTACTGCAAGCGCTGCAGAATTGGCAGCTCCGTTGACC
Gri2	GCAATGTAACTTTCAATTCCGTAGTGCATTGCAGTTGATT----TAAGCAACTACTGCATGCCCTGCAGAATTGGCAGCTCTGTTGACC

---

miR-954   chr4:646355-646482

Species	Sequence
dm2	AACACAAGATTTTCTGGGTGTTGCGTTGTGTGTACCTGTGTACAGGCGTATTCACATGCAACATCCCTTACATCTTGCT-----------TGA
Sim1	AACACAAGAATTTCTGCGCGTAGAGTTTTGTGTACATGTGTACGTGCGTATTCACATCCAACATCCCTGACGTCTTGCT-----------TGA
Sec1	AACACAAGAATTTCTGCGCGTAGAGTTTTGTGTACATGTGTACGTGCGTATTTACATCCAACATCCCTGACGTCTTGCT-----------TGA
Yak2	AACACAAGATATTCTACGCGTTGTGTTTTG--------------------TGTACATGCAACATCCCTGACGTCTTGCG-----------CGA
Ere2	AACACAAGATATTCTGCGCGTTGTGTTTTG---ACAT----------GTATGTACATGCAAC--------CGTTATGCGTTCCAAGGACCCTA
Ana3	--------=====================================================================================
dp4	=============================================================================================
Per1	=============================================================================================
Wil1	--------=====================================================================================
Vir3	=============================================================================================
Moj3	ATTAGAAG=====================================================================================
Gri2	=============================================================================================

---