Genes with non-conserved miR* (n = 20 ) (showing only valid orthologous sequences)

Color Code:    mir sequence   mir* sequence   predicted mir*   mutation

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miR-1001   chr3R:23468167-23468297

Species	Sequence
dm2	CTGGCCTGTCCCTGGGTAAACTCCCAAGGATCAGGTGGAGATTGAATCCCGATCCTTGGGTTTCTGCTCTCGGGCAAGGTCAGT
Sim1	CTGGCCTGTCCCTGGGTAAACTCCCAAGGATCAGGTGGAGATTGAATCCCGATCCTTGGGTTTCTGCTCTCGGGCAAGGTCAGC
Sec1	CTGGCCTGTCCCTGGGTAAACTCCCAAGGATCAGGTGGAGATTGAATCCCGATCCTTGGGATTCTGCTCTCGGGCAAGGTCAGC
Yak2	CTGGCCTGTCCCTGGGTAAACTCCCAATGATCCGGTGTACATTGAATTCGGATCCTTGGGTTTGAGCCCAAGGACAAGGACAGT
Ere2	CTGGCCTGTCCCTGGGCAAACTCCCAATGATGCGGTGTACATAGAATCCCGATCCTTGGGCTTCTGCCCACGGGCAAGGACAGT

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miR-303   chrX:4211395-4211505

Species	Sequence
dm2	GATATCTTGGTTTAGGTTTCACAGGAAACTGGTTTAATAACGAAAACTAGTTTCCTCTAAAATCCTAATCAAGACATCAT
Sim1	GATCTCTTGCTTT-GGCATTAAAGGAAGCTAGTTTAATTACGAAAACTAGTTTCCTCTAACGTTTCAAACAATACATCAT
Sec1	GATCTCTTGCTTT-GGCTTTAAAGGAATCTAGTTTGATTACGAAAACTAGTTTCCTCTAAGGTTTTAAACATTACATCAT

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miR-959   chr2L:5640919-5641057

Species	Sequence
dm2	T------------GTTCTATATTCTTAGTACTCGGGTTGATAAAGACCTTTTCTT---CAGGGAGCCTTTGTCATCGGGGGTATTATGAAATATAGTTTAAA
Sim1	T------------GTTCTATATTCTTAGTACTCGGGTTGATAAAGACCTTTTCTT---TGCGGAGCCTTTGTCATCGGGGGTATTATGAAATATAGTTTAAA
Sec1	T------------GTTCTATATTCTTAGTACTCGGGTTGATAAAGACCTTTTCTT---TGCGGAGCCTTTGTCATCGGGGGTATTATGAAATATAGTTTAAA
Yak2	T------------GTTCTATATTCTTAGTACTCGGGTTGACAAAGACCTTTCCTT----GCGGCGCCTTTGTCATCGGGGGTATTATGAAATATAGCTCAAA
Ere2	T------------GTTCTATATTCTTAGTACTCGGGTTGACAAAGAGCTTTCCTT----GCGGCGCCTTTGTCATCGGGGGTATTATGAAATATAGCTCAAA
Ana3	T------------GTTCTATATTCTTAGTACTCGGGTTGATAAAGACCTTTCCTG----GAGCCGCCTTTGTCATCGGGGGTATTATGAAATATAGCTCAAA
dp4	TTTTTTTGTTTTGGTTCTATGTTCTTAGTACTTGGGTTGATAAAGACCACTCGTAGTGTGAGAAGCCTTTGTCATCGCGGGTATTATGCAACATAGCTCAAA
Per1	TTTTTTTGTTTTGGTTCTATGTTCTTAGTACTTGGGTTGATAAAGACCACTCGTAGTGTGAGAAGCCTTTGTCATCGCGGGTATTATGCAACATAGCTCAAA
Wil1	T------------GTTCTATATTCTTAGTACTCGGGTTGATAAAGACAAAATGTT-TACCAATCGCCTTTGTCATCGGGGGTATTATGAAATATAGCTCAAA

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miR-961   chr2L:5641170-5641299

Species	Sequence
dm2	GGCCGAGTTACCTTTGATCACCAGTAACTGAGATT--GTTTCTGATACGGTTTCGTTTTCTGGCAATC-AAAAGAACTTGGACT------------------CG
Sim1	GGCCGAGTTACCTTTGATCATCAGTAAGTGAGATT--GTTTCTGATACGATTTCGTTTTCTGGCAATC-AAAGGAACTC-GACT------------------CG
Sec1	GCCCGAGTTACCTTTGATCACCAGTAAGTGAGATT--GTTTCTGATACGATTTCGTTTTCTGGCAATC-AAAGGAACTC-GACT------------------CG
Yak2	GGTCGAGTTACCATTGATCACCGGTTACTGAGGTT--GTTCCTTCTTTGGCTTCGTTTTCTGGCGATC-AAAAGAACTC-GACT------------------CG
Ere2	GGTCGAGTTACCATTGATCACCGGTTACTGAGGTT--GTGCCACATTCGGCTTCGTTTCCTGGCGATC-AAAAGAACTC-GACT------------------CG
Ana3	GTCCGAGCACTATTTGATCACTGGTTACTGAGGTT--GTTTTGTCATAAGCTTCGTTTTCTGGCGATC-AAATACGCTC-GACT--------------------
dp4	GTCAGAGTTTGATTTGATCTCTAGTTACTGGGCTTTGATTCGAAATAAGGCTTATTATTCTAGTGATTGAAATGAACTC-GACT------------------CG
Per1	GTCAGAGTTTGAGTTGATCTCTAGTTACTGGGCTTTGATTCGAAATAAGGCTTATTATTCTAGTGATTGAAATGAACTC-GACT------------------CG
Wil1	GTTTGAGTTTACATTGATCACTGGTTAGTGAGGTTCAAAGTCAGACCCAACTTCGTTATCTGGCGATC-AAATAAACCT-GGCTTACAAAAGCTATAATTGCTG

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miR-966   chr2L:6045606-6045733

Species	Sequence
dm2	CTGATCCGCTGCTGTGGGTTGTGGGCTGTGTGGCTGTGG-------TATAGGTGCCGCCAGTTGATAACCCCCAGCGTGGGCACGGA
Sim1	CTGATCCGCTgctgtgggctgtgggctgtgggctgtaaggctgtggTATAGGTGCCGCCAGTTGATAACCCCCAGCGTGGGCACGGC
Sec1	CTGATCCGCTGCTGCGGGTTGTGGGCTGTGAGGCTGTGG-------TATAGGTGCCGCCAGTTGATAACCCCCAGCGTGGGCACGGC
Yak2	CTGATCCGCTGCTGTGGGATGTGGGATGTGGGCTGTGG--------TATAGGTGCCGCCAGTTGATAACCCCCAGCGTGGGCACGGC

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miR-967   chr2L:12459983-12460120

Species	Sequence
dm2	GAC------TTGGAG-----AGCAGAGA-----------------TACCTCTG--------------------------------GAGAAGCGCGTGACCTGACCCC-AGCAG-----------GAGAACC-CAACCCGCT----TTTC------CACCTAGGTGTC----------------T---CTCTCTCTCTT------TATCT
Sim1	GAC------TTGGAG-----AGCAGAGA-----------------TACCTCCG--------------------------------GAGAAGCGCGTGACCTGACCCC-AGCAG-----------GAGAACC-CAACCCGCT----TTTC------CGCCTAGGTGTC----------------T---CTCTCTCTCTCTCACTCTATCT
Sec1	GAC------TTGGAG-----AGCAGAGA-----------------TACCTCCG--------------------------------GAGAAGCGCGTGACCTGACCCC-AGCAG-----------GAGAACC-CAACCCGCT----TTTC------CGCCTAGGTGTC----------------T---CTCTCTCTCTCTC----TATCT
Yak2	GACGGAGACTTGGAG-----AGCAGAGACAGAGA--------TGATACCTCTG--------------------------------GAGAAGCGCGTGACCTGACCCC-AGCAG--------------AACC-CAACCCGCT----TTTC------CGCCTAGATGTC----------------T---CTATCTCGCTCTCCCTCTCTCT
Ere2	GAC------TTGGAG-----AGCAGAGA--------------TGATACCTCTG--------------------------------GAGAAGCGCGTGACCTGACCCC-AGCAG-----------GAGAACC-CAGCCCGCT----TTTC------CGCCTAGGTGtc----------------t---ctcactctctctctctctctct
Ana3	GAT------TTTGAG-----AGGAGAGA-----------------TACCTC-----------------------------------AGAAGCGCGTGACCTGACCCC-GTCCGTCTGTCCATCTATGAACC-CAACCCGCT----TTTCTCCAAACACCAGAGAG--------------------------------------------
dp4	GAC------TTGGAG-----AGAAGAGA-----------------TACCCACAAGAGGCAGGCAGTGAAGTGGAGTGGAGGGAGCGAGAAGCGCGTGACCTGACCCC-AAGAC------------CGAACC-CAACCCGGT----TCTG------TTCTCCAGTGTA----------------CAGACAGGCACTCTGTATGAGTATGT
Per1	GAT------TTGGAG-----AGAAGAGA-----------------TACCCACAAGAGACGGTCCGTG-----GAGTGGAGGGAGCGAGAAGCGCGTGACCTGACCCC-AAGAC------------CGAACC-CAACCCGGT----TCTG------TTCTCCAGTGTA----------------CAGACAGGCACTCTGTATGAGTATGT
Wil1	=================================================================================================================================================================================================================
Vir3	GAA------GAAGAAGCAGAGCGAGCAA--GCAGCGTTTTGTGTCTACCTCAGAAA-----------------------------GCGAGACGCGTG-----AACCC-AAATG------------CGAACCTCGACCCGACTCGAATTC------CGACTCAACGCAAACGCTCAActgtctgt---ctgtctgtctgtctgtctgtct
Moj3	gaa------aaagaagaagcagCGGCAACAGAAACGTTTGGTGTCTACCTCAGAAA-----------------------------GCGACACGCATG-----AACCCCAAAAA------------CGAACCTCGACCCGAC-CGACTAC------CAATT-----------------------T---CTATTTGTCTGACTCTGTCTCT
Gri2	GAG------TAAAAGGAAGAAGCAGACA---------------------------A-----------------------------AAGACACGCGTG--TTGAACCC-GAAAA------------CGAACC-----------CAACTTC------AAATTCAACGCA---------------------------CTTGCCTCTG-----

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miR-968   chr2L:13747727-13747859

Species	Sequence
dm2	TGGAAGCTTCCTTAAGTAGTATCCATTAAAGGGTTGTTCTCAACATGC-----AAATCAACCTTTTGATGTACTACTTTAAGAATCTCCAGTT
Sim1	TGGAAGCTTCCTTAAGTAGTATCCATTAAAGGGTTGTTCTCAACATGC-----AAATCAACCGTTTGATGTACTACTTTAGGAATCTACAGTC
Sec1	TGGAAGCTTCCTTAAGTAGTATCCATTAAAGGGTTGTTCTCAACATGC-----AAATCAACCGTTTGATGTACTACTTTAGGAATCTACAGTC
Yak2	TGGAAGCTTCCTTAAGTAGTATCCATTAAAGGGTTGTGGTCACAATA------AGATCAACCTTTTGATTTACTACTTTAGGAATCTCCAGTC
Ere2	TGGAAGCTTCCTTAAGTAGTATCCATTAAAGGGTTGTGGTCACAATT------GAATCGACCGTTTAATGTACTACTTTAAGAATCTCCAGTC
Ana3	TGGCAGTTTCCTTAAGTAGTATCCATTAAAGGGTCGTTAATA-TATTC-----AAAGTGACCGTTTGATGTACTACTTTAGGTAGCTCCATTT
dp4	CTGCAGCTTCCTTAAGTAGTATCCATTAAGAGGTCGTCATCTAGCTA------AAATCGACCTTTTGATGTACTACTTTAAAAAAGCACAGTC
Per1	CTGCAGCTTCCTTAAGTAGTATCCATTAAGAGGTCGTCATCTAGCTA------AAATCGACCTTTTGATGTACTACTTTAAAAA-GCACAGTC
Wil1	--GCAGATTCTTTAAGTAGTAACCTTTAAAGGGTCGTTTGTCCAATTCTTTTAAAGTCGATCCTTTAAGTTACTACTTGCAGAATGTGTTTCT

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miR-972   chrX:19385068-19385199

Species	Sequence
dm2	TAGGGAAATTGCTAAATATTTTTTTTGTATAAATAACTTTT---AACTTTTGTACAATACG-AATATTTAGGCATTTCTCAAATC
Sim1	TAGTG-AATTGCTAAATATTTTCTTTGTATAAATGACTTTT---AACATTTGTACAATATT-AATATTTAAACATTTCTCGAATC
Sec1	TAGTG-AATTGCtaaatattttctttgtataaataactttt---aatatttgtacaatatt-aatatttaaaCATTTCTCGAATC
Ere2	TAGTGAAATTGTTAAATATTTACTTTGTATAAATGACCTTCATAAACATTTATACAATTTCAAATATTTTGCCATTTCTCAATCC

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miR-975   chrX:19392669-19392800

Species	Sequence
dm2	AATTTTTGATTTTAAACACTTCCTACATCCTGTATGTGTTTTG-CATCCGGTACAGATGTGGGAGTCGTTTGCACTCAGAGATTTC
Sim1	AGTTTTTGATTTTAAACACTGCCTACATCCTGTATGTGTTTTG-CATCCGATACAGTTGTAGGAGTCGTTTGCAGTCAGAGATTTC
Sec1	AGTTTTTGATTTTAAACACTCCCTACATCCTGTATGTGTTTTG-CATCCGATACAGTTGTAGGAGTCGTTTGCAGTCAGAGATTTC
Yak2	AATTCTTGACTTTAAACACTGCCTACATACTGTATGTGTTTTG-CACCCGATACAGATGTGGGGGTCGTTTGCAATCAGAGATTCC
Ere2	AATTCTTGACTTTAAACACTTCCTACATCCTGTATGTGTTTTG-CGCCCTATACAGATGTGGGGGTCGTTTGCACTCAGGGATTCC
Ana3	AATATTTGATTTTAAACACTACCTACATCCAGTATGTTACTTGACTCCCAATACGGATGTGGAGGGCGTTTACACTCAGAGATTCT

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miR-976   chrX:19392811-19392948

Species	Sequence
dm2	GCAGTGCCGCGGCATTGGTGAGGCCATCTCCAATGGATTAGTTCTCAACATTGGATTAGTTATCATCAATGCCGGTGCACTGCA
Sim1	GCAGTGTCGTGGCATTGGTGAGGACATCTCCAATGGATTGGTTCTCATCATTGGATTAGTTATCATCAATGCCGGTGCACTGCA
Yak2	GCAGTGCCACGACATTGGTGAGGGCATCTCCAATGGG-GACCCGGCATCATTGGATTAGTTCTCATTAATGCCGGAGCACTGCA
Ere2	GCAGTGCCTCGACATTGGTGAGGGCATCTCCAATGGG-GAGCCAGCATCATTGGATTAGTTCTCATTAATGCCGGAGCATGGCA
Ana3	GGAGCGCCTCGACATTGGTGAGTTCATCTCCAATGGT-CAGTAGCCCGCATTGGATTAGTTCTCATTGATGGCGAAGC------
Moj3	GCAGCCCCTCGCGATTGATGAAAGCATCTCCAATGAG-TATTTC---GCATTGGATTAGTTCTCATCGATGTCGATGCGCTGTA

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miR-978   chrX:19395152-19395284

Species	Sequence
dm2	GGCGGCACAATCTGCAATCTACGCCACTGGCTTACGTT----GCAATCGAAAATCGTGTCCAGTGCCGTAAATTGCAGTTGTGTGAACGC
Sim1	GGCGGCACAATCTGCAATCTACGCCACTGGCTTACGTT----GTGGTCGAGAATCGTGTCCAGTGCCGTATATTGCAGTTGTGTGGACGC
Sec1	GGCGGCACAATCTGCAATCTACGCCACTGGCTTACGTT----GTAGTCGAGAATCGTGTCCAGTCCCGTAAATTGCAGTTGTGTGGACGC
Yak2	GGCGGCACAGCCAGCACTCTACGCCGCTGGCTTACGTT----GTACTCGGAAATCGTGTCCAGTGCCGTTGATTGCAGTTGTGTGGACGC
Ere2	GGCGGCACAACCAGCATTCTACGCCGCTGGCTTACGTT----GTACTCGAAAATCGTGTCCAGTGCCGTTGATTGCAATTGTGTGGACGC
Ana3	GGCGGCACAGACAGCATTCGACGCTGCTGGCTTACGTG----GTGGTTGATATCCGTGTCCAGTGACGTTGATTGCAGTTGTGTAGACGC
Wil1	GGCAACACAGGCAGCATTCGACGACGCTGGCTTACGTTAAAAACAAACGATATCCGTGTCCAGTGACGTTGATTGCAGTTGTGT--ACAA

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miR-979   chrX:19395753-19395888

Species	Sequence
dm2	GATGTCACAAATA--------CACTGAATTTGGGGGG--------------AATTCTTATGTATATACAAATTCTTCCCG-------AACTCAGGCTAATTTTGTGGCATC
Sim1	--------------------------------------------------------------ATATACAAATTCTTCACG-------AATTCAGGCTAATTTTGTAGGAGC
Sec1	--------------------------------------------------------------ATATACAAAATCTTCACG-------AATTCAGGCTACTTTTGTAGGAAC
Yak2	---------------------------------------------------------------------------------------------------------------
Ere2	GTGCCAC-------------------------------------------------------ACAAATCGATTAGCTCTG-------AATTCGGGCGGAATT---------
Ana3	-----------------------tttcatttaaaaagt------------tattaagtaatcaattataaattgtataaa----tataattCAGGTAACGTCTAAAAAATG
dp4	A---TCGAAAATATT--TATGCGCGTAAATTTAAGAGTAAG---------TCCTTAGTAAGTAAGGAAGAA----CTACG------------CTCTGGATTTGATATACTC
Per1	A---TCGAAAATATT--TAAACGCGTTAAATTAAGAGTAAG---------TCCTTAGTAAGTAAGGAAGAACT-TCTACG-------AATTTATATAGATTTTATATTCTC
Wil1	--------------------------------------acgcacacacacacacacacaTCTATATATAAATCAACCAAGAAAACACAATATCGAAGAAATTAGAAAG---
Vir3	--=============================================================================================================
Moj3	-------------------------------AAAGGGCT-------------------------ATAGAAATTGATGACG-------ATATAATCCAAAACTAAGATTACA
Gri2	-----CAATAATAATAATAGTGATAGGAGTTGAAGAGCTT----------------------AAATGTAAACTGATAATT-------GTAT-ATACAAAGTTGAAAATGTC

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miR-982   chrX:4211022-4211155

Species	Sequence
dm2	AATCATGTTAGATCCTGGACAAATATGAAGTAAATTGTTTTTATGCATC----AATTACTTGATATTCATCCTTGAACTAAATGGTTTTA
Sim1	AATCATGCTAGATCATTAACAAGTATCATGTAAATTGAATTTTTGTATATATCAATTACATGTTATTCGTTCTTGAACTTAATGGTTTTA
Sec1	AATCATGCTAGATCAAGAACAAATATCATGTAAATTGCTTTTTTACATA----AAATACAGGATATTCGTTCTTGAGCTTAATGGTTATA
Yak2	AATCATGCTAGATCTTGGAAAAATATCTAATAGATGGTTTTTATACATC----AATCAATTGATATTTTTCCTTGAACTAAATGGGTTTA

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miR-983-1   chrX:4213545-4213636

Species	Sequence
dm2	TGCAATAATTAAATAATACGTTTCGAACTAATGATTTTCAGTTCATTCATTAGGTAGTTACGCATTATCTAGTTGTTGTAAA
Sim1	TGCAGTAATTTAGTAATACCTTTCGAACACATGATTTTCAGT-CATTCATGAGTTCGTCAGGTATTATCTAGTTATTGTAAA
Sec1	TGCAGTAATTTAGTAATACCTTTCGAACATATGATTTTCAGT-CATTCATGAGTTCGTTAGGTATTATCTAGTTATTGTAAA
Ere2	TACAGTGATTTAATAATTCGATTCGAAGTTATGTGCTTTAAT-CATTCATAAATGCGAAACGGATTATTAAGTTATTGTTAA
Moj3	TAAAATAACTAAATAAT-----TAAAACCAAAACCTATCAATTTAATCAATAAA-CGAAATTTGTTATCTAGCT---TTAAG

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miR-984   chrX:4213862-4213992

Species	Sequence
dm2	AACAAATTTCATTGAGGTAAATACGGTTGGAATTTTGTCTTTTAACTATAAATCCAACCGAATTTGGCTCGGCGAAATTTTTCAG
Sim1	GGGAGAAATAAGAGGGCTAAAAACGGGCCACAACTCACTTCCTAAATTTA--TTGAACCAAATG------GGTACGACTTCCAAG
Sec1	TTG-------------C====================================================================
Yak2	=====================================================================================
Ere2	===================================================ATTCAGTCAATTC--------TGAGTCTTGTAAA
Ana3	=====================================================================================
dp4	=====================================================================================
Per1	=====================================================================================
Wil1	=====================================================================================
Vir3	=====================================================================================
Moj3	=====================================================================================
Gri2	=====================================================================================

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miR-985   chrX:16025170-16025296

Species	Sequence
dm2	ataataGCACTGCTGGCTCATTGGTACATTTCATAAGTACCTTATCAAATGTTCCAATGGTCGGGCAGAGCTATTATTT
Sim1	------GCACTGCTGGCTCATTTGTACATTTCATAAGTACCTTATGAAATGTTCCAATGGTCGGGCAAAGCTATTACTG
Sec1	------GCACTGCTGGCACATTGGTACATTTCATAAGTACCTTATGAAATGTTCCAATGGTCGGGCAGAGCTATTACTT
Yak2	------GCACTGCGGGCTCATTGGTACCTTTCATAAGTGCCTTATCCA-GGTTCCAATGGTCCGGCAGAGCTGTC-TTA
Ere2	------GCACTGCGGGCCCATTGGTACCTTTCATAAGTACCTTATCAAAGGGTCCAATGGTCTGGCAGAGCTGCT-TTA

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miR-990   chr2R:12410065-12410191

Species	Sequence
dm2	CTGCTCTGCGACATTCACCGTTCTGAGTTGGCCCCAAGTGCACGTGGGCCAGCTTTCAGCTTCGGTGCCATTTCACCCCGAGC
Sim1	CTGCTCAGCGACATTCACCGTTCTGAGTTGGCCCCAAGTGCACGTGGGCCAGCTTTCAGCTTCGGTGCCATTTCACCCCGAGC
Sec1	CTGCTCTGCGACATTCACCGTTCTGAGTTGGCCCCAAGTGCACGTGGGCCAGCTTTCAGCTTCGGTGCCATTTCACCCCGAGC
Yak2	CTGCTCTGCGACATTCACCGTTCTGAGTTGGCCCCAAGTGCACGTGGGCCAGCTTTCAGTTTCGGTGCCATTTCACCCCGAAC
Ere2	CTGCTCTGCGACATTCACCGTTCTGAGTTGGCCCCAAGTGCACGTGGGCCAGCTTTCAGTTTCGGTGCCATTTCACCCCCAGC

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miR-991   chr2R:16100042-16100178

Species	Sequence
dm2	CAGTTTCAGGCTTTTCCCAACTACACCTATTAATACATATTTTAACGTCCTATTAAAGTTGTAGTTTGGAAAGTTTTGGTTTTGCA
Sim1	CAGTTTCAGGCTTTTCCCAACTACATCTATTAATATTTATTTTAACGTCGTATTAAAGTTGAAGTTTGGAAAATTTTGGTTTTGCA
Sec1	CAGTTTCAGTCTTTTCCCAACTACATCTATTAATACTTATTTTAACGTCGTATTAAAGTTGAAGTTTGGAAAATTTTGGTTTTGCA
Yak2	CAGTTTCAAGCTTTTCCCCACTCCTTGCTTTAATACTTATTTTAACGTCGTATTAAAGCCAGAGTTTGGAAAGTTTTGATTCTGCA
Ere2	CAGCTTCAAGCTTTTCCCCACTCCTTGCTTTAGTACTTATTTTAATGTCGTATTAAAGCCAGAGTTTGGAAAGTTTTGATTCTGCT

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miR-992   chr2R:16100156-16100288

Species	Sequence
dm2	TTCCCAAGTGCCTGGTATCAGCAAAGTGTTATTTTTTATGTTTATGTAAAGTACACGTTTCTGGTACTAAGTACTTCGAGAAA
Sim1	TTCGCAAGTGCCTGGTTTCAGAGAGGTGTAATTTTT---GT---TGTATAGTACCCTTTTTTGGAACCAAGCCCTTTGAGAAA
Sec1	TTCGGAAGTGCCTGGTATCAGATAGGTGTAATTTTT---GTGTTTGTATAGTACACGTTTCTGGAACCAAGCCCTTTGAGAAA
Yak2	TTCCCAAGTGCTTAGTATCAGCAAGGTGTAATTTTT---GTTTGGTTAAAGTACACGTTACTGGTACTACGTACTTCGAGAAA
Ere2	TTCCCAAGTGCATAGTATCAGCAAGGTGTAATTTTT---ATTTGGGTAAAGTACACGTTACTGGTACTAGGTACTTTGAGAAA

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miR-997   chr3R:15152675-15152890

Species	Sequence
dm2	GAATTTAGTATGCCCAAACTCGAAGGAGTTTCACCTCCATAAGAGCGACAGTC-CTGGAGAAGTTATCAGAGCCAAAAAAATTCATATGATGA-TGCATTTTCC--GTCTCTGAAAACGTCTTCAGCAGAA-GTTGTTTTTAGCGAAGTGAAACTCATTCGATTTTGATCATACTAACGA-CAT
Sim1	GAATTTAGTATGCCCAAACTCGAAGGAGTTTCACCTCCATAGGAGCGGCAGAC-CTGGAGAAGTTTTCAGAGCCAAAAAAATTCATATGATGA-TGCATTTTCA--GTCTCTGAAAACTTCTTCAACAGAA-GTTGATTTTAGCGAAGTGAAGCTCATTCGATTTTGATCATACTAACGA-CAT
Sec1	GAATTTAGTATGCCCAAACTCGAAGGAGTTTCACCTCCATAGGAGCGGCAGAC-CTGGAGAAGTTTTCAGAGCCAACAAAATTCATATGATGA-TGCATTTTCA--GTCTCTGAAAATTTCTTCAGCAGAA-GTTGATTTTAGCGAAGTGAAGCTCATTCGATTTTGATCATACTAAC----AT
Yak2	-------ATATGC----ACTCGA--------CACA---------------------------------------------ATTTATTTAATGA-TGCATTTTCA--GTCCCTGAAATCTTCTTCAGTAAAA-GTGGATTTTTGTAAAGTTGAGCTCATTCGACGAGGCAAGTTTAATAAA----
Ere2	GCAGTTTATATACCCAAACTCGAAGGAGTTCCACATTAAGAAGAGCAGCAGAAGCAGAAAAAAATGTCTGGACCCTTGAAATTCATTTTGCAAATGCATTTCCATTGGCTCGGAAATCTTTCTCTGTCAGGTGTTGATTTTTTAAAAGTGGAGCTCATTCGATTTTGAATATATAAAATAACAG

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