Text Box: The next charts are based on the number of s2n in each window above 1. I am unsure of the best way to do this: raw number > 1 or percentage > 1 to account for a different number of 7mers in each window (due to filtering and duplicates).
Text Box: The following charts are based on a binomial p-value calculation. We count the number of genes in each window with a p < .05. Again we do both raw counts and percentage calculations.
These charts use the MWW test (and 1-sided t-test) to determine if the distribution of conserved targets in a given window is significantly different than the distribution of all possible 7mers.