| No | Gene | Len. | Blast qCov/tCov | Domain qCov/tCov | EST all/spliced | Clean m full/part | Clean r full/part | Clean d full/part | Synteny m/r/d | Dupl. | Incompl. | CpG | OR | lr prob. | Ensemble/nscan/sgp/ eXoniphy/transmap | PET/SAGE/CAGE | id |
| 1 | chr11:+4356K | 840 | 0.9/0.8 | 0.7/0.7 | 0.6/0.0 | fsh/fsh | fsh,stop/fsh,stop | fsh/fsh | 1.0/1.0/1.0 | 0.0 | 103.0 | 0.0 | 0.8 | 0.89 | xt | 0.0/0.0/0.0 | seg2.0019;orfchr11.83553 |
| 2 | chr11:+4396K | 675 | 1.0/0.7 | 0.8/0.7 | 0.0/0.0 | OK/OK | OK/OK | OK/OK | 1.0/1.0/1.0 | 0.0 | 268.0 | 0.0 | 1.0 | 0.18 | xt | 0.0/0.0/0.0 | seg2.0020;orfchr11.83591 |
| 3 | chr11:+4453K | 738 | 0.8/0.6 | 0.8/0.7 | 0.1/0.0 | fsh/fsh | fsh/fsh | fsh/fsh | 1.0/1.0/1.0 | 0.0 | 198.0 | 0.0 | 0.7 | 0.25 | x | 0.0/0.0/0.0 | seg2.0022;orfchr11.83657 |
| 4 | chr11:+4855K | 714 | 0.8/0.6 | 0.7/0.6 | 0.0/0.0 | fsh,stop/fsh | fsh,stop/fsh | fsh,stop/fsh | 1.0/1.0/1.0 | 0.0 | 212.0 | 0.0 | 0.8 | 0.17 | x | 0.0/0.0/1.0 | seg3.0015;orfchr11.83831 |
| 5 | chr11:+5071K | 525 | 1.0/0.6 | 1.0/0.6 | 0.0/0.0 | OK/OK | OK/OK | OK/OK | 1.0/1.0/1.0 | 0.0 | 525.0 | 0.0 | 1.0 | 0.10 | xt | 0.0/0.0/0.0 | seg2.0030;orfchr11.84269 |
| 6 | chr11:+5380K | 951 | 1.0/1.0 | -/- | 0.0/0.0 | fsh/fsh | fsh/fsh | fsh/fsh | 1.0/1.0/1.0 | 0.0 | 0.0 | 0.0 | 1.0 | 0.29 | esxt | 0.0/0.0/0.0 | seg2.0034;orfchr11.84552 |
| 7 | chr11:+5743K | 888 | 1.0/0.9 | 0.8/1.0 | 0.0/0.0 | OK/OK | OK/OK | stop/OK | 1.0/1.0/1.0 | 0.0 | 60.0 | 0.0 | 1.0 | 0.77 | xt | 0.0/0.0/0.0 | seg2.0047;orfchr11.84944 |
| 8 | chr11:+48568K | 582 | 1.0/0.6 | 0.9/0.7 | 0.0/0.0 | OK/OK | OK/OK | OK/OK | 1.0/1.0/1.0 | 0.0 | 367.0 | 0.0 | 1.0 | 0.22 | sxt | 0.0/0.0/0.0 | seg2.0027;orfchr11.104207 |
| 9 | chr11:+56153K | 618 | 1.0/0.6 | 0.8/0.7 | 0.0/0.0 | OK/OK | stop/OK | OK/OK | 1.0/1.0/1.0 | 0.0 | 572.0 | 0.0 | 1.0 | 0.84 | nxt | 0.0/0.0/0.0 | seg3.0028;orfchr11.105655 |
| 10 | chr11:+56542K | 621 | 1.0/0.7 | 1.0/0.8 | 0.0/0.0 | fsh/OK | fsh/OK | fsh/OK | 1.0/1.0/1.0 | 0.0 | 307.0 | 0.0 | 1.0 | 0.48 | xt | 0.0/0.0/0.0 | seg3.0031;orfchr11.105871 |
| 11 | chr11:+59016K | 558 | 1.0/0.6 | 1.0/0.7 | 0.0/0.0 | OK/OK | OK/OK | OK/OK | 1.0/1.0/1.0 | 0.0 | 347.0 | 0.0 | 1.0 | 0.08 | x | 0.0/0.0/0.0 | seg3.0039;orfchr11.107318 |
| 12 | chr11:+59273K | 564 | 1.0/0.6 | 0.9/0.6 | 0.0/0.0 | fsh/OK | fsh/OK | fsh/OK | 1.0/1.0/1.0 | 0.0 | 192.0 | 0.0 | 1.0 | 0.98 | nxt | 0.0/0.0/0.0 | seg3.0040;orfchr11.107443 |
| 13 | chr11:+123534K | 675 | 1.0/0.7 | 0.8/0.7 | 0.5/0.0 | OK/OK | OK/OK | OK/OK | 1.0/1.0/1.0 | 0.0 | 258.0 | 0.0 | 1.0 | 0.51 | ext | 0.0/0.0/0.0 | seg2.0013;orfchr11.144582 |
| 14 | chr11:-4124K | 438 | 1.0/0.4 | -/- | 0.0/0.0 | OK/OK | warnN,OK/warnN,OK | OK/OK | 1.0/1.0/1.0 | 0.0 | 555.0 | 0.0 | 1.0 | 0.05 | xt | 0.0/0.0/0.0 | seg2.0018;orfchr11.83438 |
| 15 | chr11:-4639K | 579 | 0.9/0.5 | 0.6/0.4 | 0.0/0.0 | fsh,stop/OK | fsh,stop/OK | fsh/OK | 1.0/1.0/1.0 | 0.0 | 443.0 | 0.0 | 0.8 | 0.36 | xt | 0.0/0.0/0.0 | seg3.0012;orfchr11.83626 |
| 16 | chr11:-4714K | 552 | 0.9/0.5 | 0.7/0.5 | 0.0/0.0 | fsh,stop/OK | fsh,stop/fsh,stop | fsh/OK | 1.0/0.9/1.0 | 0.0 | 388.0 | 0.0 | 0.9 | 0.06 | x | 0.0/0.0/0.0 | seg3.0013;orfchr11.83698 |
| 17 | chr11:-4730K | 495 | 1.0/0.5 | 0.7/0.5 | 0.0/0.0 | stop/stop | OK/OK | OK/OK | 1.0/1.0/1.0 | 0.0 | 443.0 | 0.0 | 1.0 | 0.08 | xt | 0.0/0.0/0.0 | seg3.0014;orfchr11.83709 |
| 18 | chr11:-4951K | 696 | 1.0/0.7 | 0.8/0.7 | 0.0/0.0 | OK/OK | fsh,stop/fsh,stop | fsh,stop/fsh,stop | 1.0/1.0/1.0 | 0.0 | 252.0 | 0.0 | 1.0 | 0.07 | t | 0.0/0.0/0.0 | seg3.0017;orfchr11.83953 |
| 19 | chr11:-5945K | 819 | 1.0/0.7 | 0.9/1.0 | 0.0/0.0 | OK/OK | OK/OK | OK/OK | 1.0/1.0/1.0 | 0.0 | 138.0 | 0.0 | 1.0 | 0.41 | xt | 0.0/0.0/0.0 | seg2.0050;orfchr11.85139 |
| No | Gene | Len. | Blast qCov/tCov | Domain qCov/tCov | EST all/spliced | Clean m full/part | Clean r full/part | Clean d full/part | Synteny m/r/d | Dupl. | Incompl. | CpG | OR | lr prob. | Ensemble/nscan/sgp/ eXoniphy/transmap | PET/SAGE/CAGE | id |
| 20 | chr11:-48344K | 690 | 1.0/0.7 | 0.9/0.9 | 0.0/0.0 | fsh,stop/OK | fsh,stop/OK | OK/OK | 1.0/1.0/1.0 | 0.0 | 219.0 | 0.0 | 1.0 | 0.35 | xt | 0.0/0.0/0.0 | seg2.0025;orfchr11.104112 |
| 21 | chr11:-55735K | 708 | 1.0/0.7 | 0.9/0.8 | 0.0/0.0 | noaln/noaln | noaln/noaln | OK/OK | 0.0/0.0/1.0 | 0.0 | 240.0 | 0.0 | 1.0 | 0.06 | ex | 0.0/0.0/0.0 | seg3.0025;orfchr11.105320 |
| 22 | chr11:-55821K | 561 | 1.0/0.6 | 0.9/0.6 | 0.0/0.0 | fsh/fsh | noaln/noaln | fsh,stop/fsh,stop | 1.0/0.0/1.0 | 0.0 | 358.0 | 0.0 | 1.0 | 0.03 | | 0.0/0.0/0.0 | seg3.0026;orfchr11.105376 |
| 23 | chr11:-57391K | 540 | 0.9/0.5 | 0.7/0.5 | 0.0/0.0 | fsh,stop/fsh,stop | fsh,stop/fsh,stop | OK/OK | 0.9/0.9/1.0 | 0.0 | 465.0 | 0.0 | 0.9 | 0.01 | | 0.0/0.0/0.0 | seg3.0033;orfchr11.106468 |
| 24 | chr11:-57816K | 534 | 1.0/0.5 | -/- | 0.0/0.0 | noaln/noaln | noaln/noaln | fsh/OK | 0.0/0.0/1.0 | 0.0 | 380.0 | 0.0 | 1.0 | 0.03 | x | 0.0/0.0/0.0 | seg3.0035;orfchr11.106692 |
| 25 | chr11:-57873K | 594 | 0.9/0.6 | 0.9/0.7 | 0.0/0.0 | noaln/noaln | noaln/noaln | OK/OK | 0.0/0.0/1.0 | 0.0 | 349.0 | 0.0 | 1.0 | 0.01 | | 0.0/0.0/0.0 | seg3.0036;orfchr11.106709 |
| 26 | chr11:-57890K | 612 | 0.8/0.5 | 0.6/0.5 | 0.0/0.0 | noaln/noaln | noaln/noaln | fsh,stop/fsh,stop | 0.0/0.0/1.0 | 0.0 | 418.0 | 0.0 | 0.8 | 0.03 | x | 0.0/0.0/1.0 | seg3.0037;orfchr11.106734 |
| 27 | chr11:-58916K | 831 | 1.0/0.8 | 0.8/0.9 | 0.0/0.0 | fsh/fsh | OK/OK | fsh,stop/fsh | 1.0/1.0/1.0 | 0.0 | 123.0 | 0.0 | 1.0 | 0.33 | et | 0.0/0.0/0.0 | seg2.0049;orfchr11.107553 |
| 28 | chr11:-74460K | 681 | 0.9/0.6 | 0.5/0.5 | 0.0/0.0 | fsh/fsh | fsh/fsh | fsh/fsh | 1.0/1.0/1.0 | 0.0 | 281.0 | 0.0 | 0.8 | 0.27 | xt | 0.0/0.0/0.0 | seg3.0042;orfchr11.122693 |
| 29 | chr11:-123217K | 594 | 1.0/0.6 | 0.9/0.7 | 0.0/0.0 | noaln/noaln | noaln/noaln | OK/OK | 0.0/0.0/1.0 | 0.0 | 352.0 | 0.0 | 1.0 | 0.01 | | 0.0/0.0/0.0 | seg3.0007;orfchr11.143986 |
| 30 | chr11:-123370K | 999 | 0.9/1.0 | 0.7/1.0 | 0.0/0.0 | fsh,stop/OK | fsh,stop/OK | OK/OK | 1.0/0.5/1.0 | 0.0 | 0.0 | 0.0 | 0.9 | 0.38 | esxt | 0.0/0.0/0.0 | seg2.0011;orfchr11.144460 |
| 31 | chr11:-123733K | 585 | 1.0/0.6 | 0.7/0.6 | 0.0/0.0 | stop/OK | stop/OK | stop/OK | 1.0/1.0/1.0 | 0.0 | 306.0 | 0.0 | 1.0 | 0.43 | xt | 0.0/0.0/0.0 | seg3.0008;orfchr11.144341 |
| 32 | chr11:-123741K | 528 | 1.0/0.6 | 0.9/0.6 | 0.0/0.0 | OK/OK | OK/OK | OK/OK | 1.0/1.0/1.0 | 0.0 | 405.0 | 0.0 | 1.0 | 0.18 | xt | 0.0/0.0/0.0 | seg2.0016;orfchr11.144740 |
| 33 | chr11:-123891K | 531 | 1.0/0.6 | -/- | 0.0/0.0 | fsh,stop/fsh,stop | fsh,stop/fsh,stop | OK/OK | 0.9/1.0/1.0 | 0.0 | 525.0 | 0.0 | 1.0 | 0.01 | t | 0.0/0.0/0.0 | seg3.0009;orfchr11.144475 |
| 34 | chr12:+47240K | 795 | 1.0/0.8 | 0.5/0.5 | 0.0/0.0 | fsh,stop/OK | fsh,stop/OK | fsh,stop/OK | 1.0/1.0/1.0 | 0.0 | 60.0 | 0.0 | 1.0 | 0.59 | x | 0.0/0.0/0.0 | seg2.0058;orfchr12.172824 |
| 35 | chr12:+47308K | 603 | 0.8/0.5 | 0.6/0.5 | 0.0/0.0 | fsh/OK | fsh/OK | fsh,stop/stop | 1.0/1.0/1.0 | 0.0 | 400.0 | 0.0 | 0.8 | 0.37 | sxt | 0.0/0.0/0.0 | seg3.0048;orfchr12.172559 |
| 36 | chr12:+53839K | 537 | 1.0/0.6 | 0.8/0.6 | 0.0/0.0 | fsh/fsh | noaln/noaln | fsh/fsh | 1.0/0.0/1.0 | 0.0 | 387.0 | 0.0 | 1.0 | 0.16 | xt | 0.0/0.0/0.0 | seg3.0049;orfchr12.178321 |
| 37 | chr12:+54068K | 882 | 1.0/0.9 | 0.9/1.0 | 0.0/0.0 | OK/OK | fsh,stop/fsh,stop | fsh,stop/fsh,stop | 1.0/1.0/1.0 | 0.0 | 51.0 | 0.0 | 1.0 | 0.31 | xt | 0.0/0.0/0.0 | seg2.0061;orfchr12.178798 |
| 38 | chr12:+54203K | 633 | 1.0/0.7 | 0.8/0.7 | 0.0/0.0 | OK/OK | noaln/noaln | noaln/noaln | 1.0/0.0/0.0 | 0.0 | 246.0 | 0.0 | 1.0 | 0.06 | xt | 0.0/0.0/0.0 | seg3.0051;orfchr12.178579 |
| 39 | chr12:+54255K | 762 | 1.0/0.8 | 0.9/0.9 | 0.0/0.0 | OK/OK | noaln/noaln | noaln/noaln | 1.0/0.0/0.0 | 0.0 | 174.0 | 0.0 | 1.0 | 0.08 | xt | 0.0/0.0/0.0 | seg2.0062;orfchr12.178924 |
| No | Gene | Len. | Blast qCov/tCov | Domain qCov/tCov | EST all/spliced | Clean m full/part | Clean r full/part | Clean d full/part | Synteny m/r/d | Dupl. | Incompl. | CpG | OR | lr prob. | Ensemble/nscan/sgp/ eXoniphy/transmap | PET/SAGE/CAGE | id |
| 40 | chr15:+100186K | 876 | 1.0/0.9 | 0.8/1.0 | 0.0/0.0 | OK/OK | OK/OK | fsh,stop/fsh,stop | 1.0/1.0/1.0 | 0.0 | 60.0 | 0.0 | 1.0 | 0.38 | ext | 0.0/0.0/0.0 | seg2.0063;orfchr15.344391 |
| 41 | chr17:-3004K | 555 | 0.9/0.5 | 0.6/0.5 | 0.0/0.0 | fsh,stop/OK | fsh,stop/OK | fsh,stop/OK | 1.0/1.0/1.0 | 0.0 | 450.0 | 0.0 | 0.9 | 0.29 | xt | 0.0/0.0/0.0 | seg3.0059;orfchr17.403041 |
| 42 | chr2:+240697K | 597 | 0.9/0.5 | 0.8/0.6 | 0.0/0.0 | fsh/fsh | fsh/fsh | fsh/fsh | 1.0/1.0/1.0 | 0.0 | 342.0 | 0.0 | 0.8 | 0.14 | t | 0.0/0.0/0.0 | seg3.0067;orfchr2.884637 |
| 43 | chr3:+99266K | 573 | 1.0/0.6 | 0.9/0.7 | 0.0/0.0 | stop/OK | OK/OK | OK/OK | 1.0/1.0/1.0 | 0.0 | 352.0 | 0.0 | 1.0 | 0.28 | xt | 0.0/0.0/0.0 | seg3.0072;orfchr3.929930 |
| 44 | chr3:+99440K | 756 | 1.0/0.8 | 0.9/0.9 | 0.0/0.0 | stop,fsh/stop,fsh | OK/OK | OK/OK | 1.0/1.0/1.0 | 1.0 | 222.0 | 0.0 | 1.0 | 0.11 | xt | 0.0/0.0/0.0 | seg2.0077;orfchr3.924598 |
| 45 | chr3:+99514K | 633 | 0.9/0.7 | 0.9/0.8 | 0.0/0.0 | stop,fsh/stop,fsh | stop,fsh/stop,fsh | fsh/fsh | 1.0/1.0/1.0 | 0.0 | 307.0 | 0.0 | 0.8 | 0.11 | t | 0.0/0.0/0.0 | seg3.0073;orfchr3.930061 |
| 46 | chr5:-180053K | 588 | 0.9/0.6 | 0.6/0.5 | 0.0/0.0 | fsh/OK | fsh/OK | noaln/noaln | 1.0/1.0/0.0 | 0.0 | 341.0 | 0.0 | 0.9 | 0.03 | t | 0.0/0.0/0.0 | seg3.0077;orfchr5.1105375 |
| 47 | chr7:-142896K | 591 | 1.0/0.6 | 0.9/0.7 | 0.0/0.0 | OK/OK | OK/OK | OK/OK | 1.0/1.0/1.0 | 0.0 | 428.0 | 0.0 | 1.0 | 0.22 | xt | 0.0/0.0/0.0 | seg2.0081;orfchr7.1237694 |