| No | Gene | Len. | Blast qCov/tCov | Domain qCov/tCov | EST all/spliced | Clean m full/part | Clean r full/part | Clean d full/part | Synteny m/r/d | Dupl. | Incompl. | CpG | OR | lr prob. | Ensemble/nscan/sgp/ eXoniphy/transmap | PET/SAGE/CAGE | id |
| 1 | chr1:-74708K | 1788 | 0.9/0.4 | -/- | 0.0/0.0 | fsh,stop/fsh | fsh,stop,warnN/fsh,stop,warnN | fsh,stop/fsh,stop | 0.9/0.7/1.0 | 0.0 | 393.0 | 0.0 | 0.0 | 0.38 | | 0.0/0.0/1.0 | seg4.0005;orfchr1.601960 |
| 2 | chr11:+113156K | 690 | 0.6/0.7 | 0.8/1.0 | 0.0/0.0 | OK/OK | OK/OK | OK/OK | 1.0/1.0/1.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.95 | nx | 0.0/0.0/0.0 | seg3.0006;orfchr11.135787 |
| 3 | chr11:-120858K | 273 | 0.9/0.1 | -/- | 1.0/0.0 | noaln/noaln | fsh,stop/fsh,stop | fsh,stop/fsh,stop | 0.0/0.8/0.9 | 0.0 | 0.0 | 0.0 | 0.0 | 0.31 | | 0.0/0.0/0.0 | seg4.0012;orfchr11.142689 |
| 4 | chr12:+88526K | 234 | 0.6/0.0 | -/- | 1.0/0.0 | fsh/fsh,stop | fsh,stop/fsh,stop | fsh,stop/fsh,stop | 0.9/0.9/0.9 | 0.0 | 0.0 | 0.0 | 0.0 | 0.40 | | 0.0/0.0/0.0 | seg4.0031;orfchr12.188980 |
| 5 | chr12:-27807K | 561 | 0.9/0.5 | -/- | 0.8/0.0 | fsh,stop/fsh | fsh,stop/fsh | stop/OK | 1.0/1.0/1.0 | 0.0 | 102.0 | 0.0 | 0.0 | 0.71 | xt | 0.0/0.0/0.0 | seg4.0027;orfchr12.166728 |
| 6 | chr13:+101845K | 342 | 0.8/0.4 | -/- | 1.0/0.0 | fsh,stop/fsh,stop | fsh,stop/fsh,stop | fsh/fsh | 0.7/0.9/0.6 | 0.0 | 0.0 | 0.4 | 0.0 | 0.40 | | 0.0/7.0/0.0 | seg4.0032;orfchr13.240333 |
| 7 | chr14:+73170K | 594 | 0.8/0.4 | 0.7/0.9 | 0.0/0.0 | noaln/noaln | fsh,stop/fsh,stop | fsh,stop/fsh,stop | 0.7/0.9/0.9 | 0.0 | 0.0 | 0.9 | 0.0 | 0.84 | n | 0.0/0.0/2.0 | seg4.0035;orfchr14.270759 |
| 8 | chr15:+38850K | 528 | 1.0/1.0 | -/- | 1.0/0.0 | OK/OK | OK/OK | OK/OK | 1.0/1.0/1.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.89 | sxt | 0.0/0.0/5.0 | seg2.0064;orfchr15.307805 |
| 9 | chr16:+65084K | 480 | 0.6/0.2 | -/- | 0.9/0.0 | noaln/noaln | noaln/noaln | fsh,stop/fsh,stop | 0.0/0.0/0.9 | 0.0 | 0.0 | 0.0 | 0.0 | 0.35 | | 0.0/0.0/0.0 | seg4.0040;orfchr16.380107 |
| 10 | chr17:+76984K | 333 | 0.5/0.3 | -/- | 1.0/0.0 | fsh/fsh | fsh/fsh | fsh/fsh | 0.9/0.9/0.9 | 0.0 | 0.0 | 1.0 | 0.0 | 0.45 | | 0.0/1.0/12.0 | seg4.0058;orfchr17.459193 |
| 11 | chr17:+77454K | 378 | 0.9/0.5 | -/- | 1.0/0.0 | noaln/noaln | fsh,stop/fsh,stop | fsh,stop/fsh,stop | 0.0/0.6/0.9 | 0.0 | 0.0 | 0.0 | 0.0 | 0.42 | | 0.0/0.0/4.0 | seg4.0059;orfchr17.460034 |
| 12 | chr17:-34083K | 1140 | 1.0/1.0 | 0.3/0.3 | 0.8/0.0 | OK/OK | OK/OK | OK/OK | 1.0/1.0/1.0 | 0.0 | 151.0 | 0.9 | 0.0 | 1.00 | ensxt | 0.0/1.0/24.0 | seg1.0004;chr17.35.001.a |
| 13 | chr18:+8503K | 585 | 0.9/0.3 | -/- | 0.0/0.0 | fsh/OK | fsh/OK | fsh,stop/fsh,stop | 1.0/1.0/1.0 | 0.0 | 351.0 | 0.0 | 0.0 | 0.71 | ns | 0.0/0.0/0.0 | seg4.0065;orfchr18.467844 |
| 14 | chr19:+1251K | 522 | 0.4/0.3 | -/- | 1.0/0.0 | fsh,stop/fsh,stop | fsh,stop/fsh,stop | noaln/noaln | 0.7/0.6/0.0 | 0.0 | 105.0 | 0.0 | 0.0 | 0.53 | t | 1.0/0.0/0.0 | seg4.0066;orfchr19.502692 |
| 15 | chr19:+40049K | 393 | 1.0/0.4 | 1.0/0.4 | 0.8/0.0 | fsh,stop/fsh,stop | noaln/noaln | fsh/OK | 1.0/0.0/1.0 | 0.0 | 154.0 | 0.0 | 0.0 | 0.38 | | 0.0/1.0/0.0 | seg4.0072;orfchr19.529548 |
| 16 | chr19:+53876K | 234 | 1.0/0.2 | 1.0/0.2 | 1.0/0.0 | OK/OK | OK/OK | OK/OK | 1.0/1.0/1.0 | 0.0 | 817.0 | 0.7 | 0.0 | 0.38 | xt | 0.0/0.0/0.0 | seg4.0076;orfchr19.540679 |
| 17 | chr19:+55759K | 270 | 0.9/0.3 | -/- | 1.0/0.0 | fsh,stop/fsh,stop | noaln/noaln | fsh,stop/fsh,stop | 0.9/0.0/1.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.51 | | 0.0/0.0/1.0 | seg4.0078;orfchr19.542520 |
| 18 | chr19:-38418K | 612 | 0.8/0.1 | -/- | 0.9/0.0 | fsh,stop/fsh,stop | fsh,stop/fsh,stop | fsh,stop/fsh,stop | 0.8/0.9/0.9 | 0.0 | 373.0 | 0.0 | 0.0 | 0.40 | | 0.0/0.0/0.0 | seg4.0071;orfchr19.527980 |
| 19 | chr2:+17861K | 582 | 1.0/1.0 | 0.3/1.0 | 0.0/0.0 | OK/OK | OK/OK | OK/OK | 1.0/1.0/1.0 | 0.0 | 12.0 | 0.0 | 0.0 | 0.54 | ext | 0.0/0.0/1.0 | seg1.0002;chr2.375.17 |
| No | Gene | Len. | Blast qCov/tCov | Domain qCov/tCov | EST all/spliced | Clean m full/part | Clean r full/part | Clean d full/part | Synteny m/r/d | Dupl. | Incompl. | CpG | OR | lr prob. | Ensemble/nscan/sgp/ eXoniphy/transmap | PET/SAGE/CAGE | id |
| 20 | chr2:+74495K | 438 | 0.5/0.2 | -/- | 0.8/0.0 | fsh,stop/fsh,stop | stop,fsh/fsh,stop | fsh,stop/fsh,stop | 0.9/0.9/1.0 | 0.0 | 63.0 | 1.0 | 0.0 | 0.72 | xt | 0.0/0.0/2.0 | seg4.0093;orfchr2.809752 |
| 21 | chr2:+213405K | 1215 | 0.7/0.6 | 0.6/1.0 | 0.2/0.0 | fsh,stop/fsh | stop,fsh/fsh | fsh,stop/fsh,stop | 1.0/1.0/0.7 | 0.0 | 0.0 | 1.0 | 0.0 | 0.48 | s | 0.0/0.0/0.0 | seg4.0087;orfchr2.865989 |
| 22 | chr2:-74495K | 930 | 1.0/0.5 | -/- | 0.9/0.0 | fsh/fsh | fsh/fsh | fsh/fsh | 0.9/0.9/1.0 | 0.0 | 968.0 | 0.7 | 0.0 | 0.50 | xt | 3.0/3.0/4.0 | seg3.0069;orfchr2.809753 |
| 23 | chr2:-128850K | 261 | 0.6/0.1 | -/- | 1.0/0.0 | fsh,stop/fsh,stop | stop,fsh/fsh,stop | fsh,stop/fsh,stop | 0.7/0.7/0.9 | 0.0 | 0.0 | 0.0 | 0.0 | 0.49 | | 0.0/0.0/0.0 | seg4.0084;orfchr2.835681 |
| 24 | chr20:+1806K | 360 | 0.7/0.1 | -/- | 1.0/0.0 | fsh/fsh | fsh,stop/fsh | fsh/fsh | 0.9/0.9/0.9 | 0.0 | 0.0 | 0.0 | 0.0 | 0.36 | | 0.0/0.0/0.0 | seg4.0094;orfchr20.674798 |
| 25 | chr20:+42528K | 597 | 0.7/0.4 | -/- | 1.0/0.0 | fsh,stop/fsh,stop | fsh,stop/fsh,stop | fsh,stop/fsh,stop | 0.5/0.8/0.9 | 0.0 | 84.0 | 0.0 | 0.0 | 0.64 | e | 0.0/0.0/0.0 | seg4.0096;orfchr20.696083 |
| 26 | chr21:-30583K | 309 | 0.8/0.5 | -/- | 1.0/0.0 | fsh,stop/fsh,stop | noaln/noaln | OK/OK | 0.9/0.0/1.0 | 0.0 | 303.0 | 0.0 | 0.0 | 0.31 | e | 0.0/0.0/0.0 | seg4.0100;orfchr21.717659 |
| 27 | chr22:+40697K | 1686 | 0.4/0.6 | -/- | 0.2/0.0 | fsh,stop/fsh | fsh,stop/fsh | fsh,stop/fsh | 0.9/0.9/0.9 | 0.0 | 0.0 | 0.0 | 0.0 | 0.67 | | 0.0/0.0/0.0 | seg4.0107;orfchr22.757002 |
| 28 | chr3:+131767K | 504 | 1.0/0.7 | 0.8/0.8 | 0.0/0.0 | fsh/OK | fsh/OK | fsh/OK | 1.0/1.0/1.0 | 0.0 | 168.0 | 0.0 | 0.0 | 0.65 | xt | 0.0/0.0/0.0 | seg4.0114;orfchr3.944155 |
| 29 | chr3:+131776K | 636 | 0.9/0.9 | 0.8/1.0 | 0.0/0.0 | stop,fsh/stop,fsh | stop,fsh/stop,fsh | stop,fsh/fsh | 1.0/1.0/1.0 | 0.0 | 39.0 | 0.0 | 0.0 | 0.50 | xt | 0.0/0.0/0.0 | seg4.0117;orfchr3.944184 |
| 30 | chr3:-49888K | 315 | 0.7/0.1 | -/- | 1.0/0.0 | fsh/OK | fsh/OK | fsh/OK | 1.0/1.0/1.0 | 0.0 | 1507.0 | 0.0 | 0.0 | 0.33 | t | 0.0/0.0/0.0 | seg4.0122;orfchr3.912685 |
| 31 | chr3:-160041K | 1086 | 0.5/0.5 | 0.4/0.6 | 0.0/0.0 | stop,fsh/fsh | stop,fsh/fsh | stop,fsh/fsh | 1.0/1.0/1.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.43 | ex | 0.0/0.0/0.0 | seg3.0071;orfchr3.955151 |
| 32 | chr3:-185700K | 588 | 0.4/0.3 | 0.4/0.5 | 0.4/0.0 | stop,fsh/stop,fsh | stop,fsh/stop,fsh | stop,fsh/stop,fsh | 0.9/0.9/1.0 | 0.0 | 435.0 | 0.0 | 0.0 | 0.41 | xt | 0.0/0.0/0.0 | seg4.0120;orfchr3.962410 |
| 33 | chr4:+147363K | 201 | -/- | 1.0/0.5 | 1.0/0.0 | fsh/OK | fsh/fsh | stop,fsh/fsh | 1.0/1.0/1.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.54 | | 0.0/0.0/0.0 | seg4.0124;orfchr4.1016929 |
| 34 | chr4:-152399K | 294 | 0.9/0.3 | -/- | 1.0/0.0 | fsh/stop,fsh | stop,fsh/stop,fsh | stop,fsh/stop,fsh | 0.7/0.9/1.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.52 | | 0.0/0.0/0.0 | seg4.0125;orfchr4.1018503 |
| 35 | chr4:-184480K | 663 | 0.7/0.7 | 0.8/1.0 | 0.0/0.0 | OK/OK | OK/OK | OK/OK | 1.0/1.0/1.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.61 | xt | 0.0/0.0/0.0 | seg3.0075;orfchr4.1027224 |
| 36 | chr5:-66389K | 486 | 0.5/0.2 | -/- | 1.0/0.0 | stop,fsh/stop,fsh | stop,fsh/stop,fsh | stop,fsh/stop,fsh | 0.9/0.9/1.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.66 | | 0.0/0.0/0.0 | seg4.0138;orfchr5.1058756 |
| 37 | chr6:-1549K | 1284 | 0.3/0.3 | -/- | 0.4/0.0 | stop,fsh/stop,fsh | stop,fsh/stop,fsh | stop,fsh/fsh | 0.9/0.9/0.6 | 0.0 | 0.0 | 0.9 | 0.0 | 0.41 | | 0.0/0.0/4.0 | seg4.0140;orfchr6.1112282 |
| 38 | chr6:-42182K | 255 | 0.6/0.0 | -/- | 1.0/0.0 | stop/stop | stop/stop | fsh/fsh | 1.0/1.0/0.8 | 0.0 | 124.0 | 0.0 | 0.0 | 0.36 | | 0.0/4.0/7.0 | seg4.0145;orfchr6.1136403 |
| 39 | chr9:-34713K | 423 | 1.0/0.3 | -/- | 1.0/0.0 | OK/OK | stop/OK | OK/OK | 1.0/0.9/1.0 | 1.0 | 96.0 | 0.0 | 0.0 | 0.31 | x | 0.0/0.0/0.0 | seg4.0164;orfchr9.1344381 |