| No | Gene | Len. | Blast qCov/tCov | Domain qCov/tCov | EST all/spliced | Clean m full/part | Clean r full/part | Clean d full/part | Synteny m/r/d | Dupl. | Incompl. | CpG | OR | lr prob. | Ensemble/nscan/sgp/ eXoniphy/transmap | PET/SAGE/CAGE | id |
| 1 | chr1:+26409K | 879 | 0.4/0.3 | -/- | 0.0/0.0 | fsh/fsh,stop | fsh,stop/fsh | fsh,stop/fsh,stop | 1.0/1.0/0.9 | 0.0 | 252.0 | 0.0 | 0.0 | 0.1 | | 0.0/0.0/0.0 | orfchr1.577965 |
| 2 | chr1:+226200K | 879 | 0.6/0.3 | -/- | 0.0/0.0 | fsh,stop/fsh,stop | fsh,stop/fsh,stop | fsh,stop/fsh,stop | 0.8/0.8/0.8 | 0.0 | 0.0 | 0.0 | 0.0 | 0.1 | | 0.0/0.0/0.0 | orfchr1.661135 |
| 3 | chr1:-74708K | 1788 | 0.9/0.4 | -/- | 0.0/0.0 | fsh,stop/fsh | fsh,stop,warnN/fsh,stop,warnN | fsh,stop/fsh,stop | 0.9/0.7/1.0 | 0.0 | 393.0 | 0.0 | 0.0 | 0.4 | | 0.0/0.0/1.0 | orfchr1.601960 |
| 4 | chr1:-199886K | 291 | 0.9/0.1 | -/- | 0.8/0.0 | fsh,stop/fsh | fsh,stop/fsh | fsh/fsh | 0.9/0.9/0.7 | 0.0 | 324.0 | 1.0 | 0.0 | 0.1 | | 0.0/0.0/6.0 | orfchr1.645959 |
| 5 | chr1:-243240K | 297 | 0.6/0.1 | -/- | 0.8/0.0 | noaln/noaln | fsh/fsh | fsh,stop/fsh,stop | 0.0/0.5/1.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.2 | | 0.0/0.0/0.0 | orfchr1.670120 |
| 6 | chr10:-10348K | 1335 | 0.4/0.3 | -/- | 0.0/0.0 | noaln/noaln | noaln/noaln | fsh,stop/stop,fsh | 0.0/0.0/0.1 | 0.0 | 18.0 | 0.3 | 0.0 | 0.5 | n | 0.0/0.0/0.0 | orfchr10.7325 |
| 7 | chr10:-102965K | 474 | -/- | 0.6/0.2 | 0.2/0.0 | fsh,stop/fsh,stop | fsh,stop/fsh,stop | fsh,stop/fsh,stop | 0.8/0.8/1.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.1 | | 0.0/0.0/3.0 | orfchr10.49624 |
| 8 | chr10:-126905K | 543 | 0.7/0.4 | -/- | 1.0/0.0 | stop,fsh/fsh,stop | stop,fsh/stop,fsh | noaln/noaln | 0.8/0.8/0.0 | 0.0 | 159.0 | 0.0 | 0.0 | 0.2 | e | 0.0/0.0/0.0 | orfchr10.63917 |
| 9 | chr10:-131199K | 831 | 0.8/0.4 | -/- | 0.8/0.0 | noaln/noaln | noaln/noaln | fsh/fsh | 0.0/0.0/0.2 | 0.0 | 111.0 | 0.0 | 0.0 | 0.2 | | 0.0/0.0/0.0 | orfchr10.68071 |
| 10 | chr10:-134067K | 702 | 0.5/0.1 | -/- | 0.4/0.0 | fsh,stop/fsh,stop | stop,fsh/fsh,stop | fsh,stop/stop,fsh | 0.3/0.3/0.9 | 0.0 | 188.0 | 0.0 | 0.0 | 0.1 | | 0.0/0.0/3.0 | orfchr10.72654 |
| 11 | chr11:+2005K | 1332 | 0.5/0.3 | -/- | 0.0/0.0 | stop,fsh/fsh,stop | fsh,stop/stop,fsh | stop,fsh/fsh,stop | 0.9/0.9/0.8 | 0.0 | 0.0 | 0.0 | 0.0 | 0.2 | | 0.0/0.0/0.0 | orfchr11.80217 |
| 12 | chr11:+92171K | 3918 | 1.0/0.8 | 1.0/1.0 | 0.0/0.0 | OK/OK | OK/OK | OK/OK | 1.0/1.0/1.0 | 0.0 | 234.0 | 0.0 | 0.0 | 0.2 | xt | 0.0/2.0/1.0 | orfchr11.128860 |
| 13 | chr11:+93437K | 243 | 0.8/0.2 | -/- | 0.0/0.0 | fsh,stop/stop | fsh/OK | fsh,stop/OK | 1.0/1.0/1.0 | 0.0 | 342.0 | 0.0 | 0.0 | 0.1 | xt | 0.0/0.0/0.0 | orfchr11.129363 |
| 14 | chr11:+125723K | 360 | 0.5/0.1 | -/- | 1.0/0.0 | fsh,stop/fsh,stop | fsh,stop/fsh,stop | noaln/noaln | 0.8/0.7/0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.2 | | 0.0/0.0/0.0 | orfchr11.145887 |
| 15 | chr11:-2561K | 228 | 0.8/0.0 | -/- | 0.6/0.0 | fsh/stop,fsh | fsh,stop/stop,fsh | fsh/fsh | 0.9/0.6/0.5 | 0.0 | 0.0 | 0.0 | 0.0 | 0.1 | | 0.0/0.0/0.0 | orfchr11.81458 |
| 16 | chr11:-17553K | 471 | 0.5/0.1 | -/- | 0.0/0.0 | stop,fsh/fsh | fsh,stop/stop,fsh | fsh,stop/fsh,stop | 0.9/0.9/1.0 | 0.0 | 93.0 | 0.0 | 0.0 | 0.1 | xt | 0.0/0.0/0.0 | orfchr11.91732 |
| 17 | chr11:-58273K | 375 | 1.0/0.4 | 1.0/0.4 | 0.0/0.0 | OK/OK | OK/OK | OK/OK | 1.0/1.0/1.0 | 0.0 | 27.0 | 0.0 | 0.0 | 0.2 | xt | 0.0/0.0/0.0 | orfchr11.106865 |
| 18 | chr11:-62790K | 420 | 1.0/0.4 | -/- | 0.0/0.0 | fsh,stop/fsh,stop | noaln/OK | OK/OK | 1.0/1.0/1.0 | 0.0 | 33.0 | 0.0 | 0.0 | 0.0 | sx | 0.0/0.0/0.0 | orfchr11.110742 |
| 19 | chr11:-113621K | 312 | 0.7/0.3 | -/- | 0.4/0.0 | fsh,stop/stop,fsh | fsh,stop/stop,fsh | fsh,stop/fsh | 0.7/0.7/0.8 | 0.0 | 0.0 | 0.0 | 0.0 | 0.1 | | 0.0/0.0/0.0 | orfchr11.136209 |
| No | Gene | Len. | Blast qCov/tCov | Domain qCov/tCov | EST all/spliced | Clean m full/part | Clean r full/part | Clean d full/part | Synteny m/r/d | Dupl. | Incompl. | CpG | OR | lr prob. | Ensemble/nscan/sgp/ eXoniphy/transmap | PET/SAGE/CAGE | id |
| 20 | chr11:-120858K | 273 | 0.9/0.1 | -/- | 1.0/0.0 | noaln/noaln | fsh,stop/fsh,stop | fsh,stop/fsh,stop | 0.0/0.8/0.9 | 0.0 | 0.0 | 0.0 | 0.0 | 0.3 | | 0.0/0.0/0.0 | orfchr11.142689 |
| 21 | chr11:-122354K | 273 | 0.9/0.3 | 0.2/0.3 | 0.0/0.0 | fsh,stop/OK | fsh,stop/stop | fsh,stop/OK | 1.0/1.0/1.0 | 0.0 | 141.0 | 0.9 | 0.0 | 0.2 | xt | 0.0/0.0/3.0 | orfchr11.143473 |
| 22 | chr12:+55397K | 2238 | 0.1/0.0 | -/- | 0.2/0.0 | fsh,stop/stop,fsh | fsh,stop/fsh,stop | fsh,errN/fsh,errN | 0.9/0.9/0.0 | 0.0 | 177.0 | 0.0 | 0.0 | 0.6 | | 0.0/0.0/0.0 | orfchr12.179577 |
| 23 | chr12:+88526K | 234 | 0.6/0.0 | -/- | 1.0/0.0 | fsh/stop,fsh | fsh,stop/fsh,stop | stop,fsh/fsh,stop | 0.9/0.9/0.9 | 0.0 | 0.0 | 0.0 | 0.0 | 0.4 | | 0.0/0.0/0.0 | orfchr12.188980 |
| 24 | chr12:+110822K | 210 | 1.0/0.1 | 0.8/0.5 | 0.7/0.0 | fsh/OK | fsh/OK | fsh/OK | 1.0/1.0/1.0 | 0.0 | 1251.0 | 0.0 | 0.0 | 0.2 | t | 0.0/0.0/0.0 | orfchr12.197481 |
| 25 | chr12:+127465K | 642 | 1.0/0.2 | -/- | 0.0/0.0 | OK/OK | OK/OK | fsh/fsh | 1.0/1.0/1.0 | 0.0 | 252.0 | 0.4 | 0.0 | 0.0 | x | 0.0/0.0/0.0 | orfchr12.206836 |
| 26 | chr12:-2611K | 528 | 0.6/0.1 | -/- | 0.5/0.0 | fsh,stop/stop,fsh | stop,fsh/fsh,stop | fsh,stop/fsh,stop | 0.9/0.9/1.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.2 | | 0.0/0.0/2.0 | orfchr12.155289 |
| 27 | chr12:-3247K | 804 | -/- | 0.8/0.4 | 0.6/0.0 | fsh/fsh | fsh,stop/fsh | fsh,stop/noaln | 0.1/0.1/0.1 | 0.0 | 0.0 | 0.0 | 0.0 | 0.1 | | 0.0/0.0/0.0 | orfchr12.156015 |
| 28 | chr12:-6938K | 540 | 0.7/0.1 | -/- | 0.4/0.0 | fsh,stop/stop,fsh | fsh,stop/stop,fsh | fsh,stop/fsh,stop | 0.2/0.4/0.9 | 0.0 | 0.0 | 0.0 | 0.0 | 0.1 | | 0.0/0.0/1.0 | orfchr12.159464 |
| 29 | chr12:-16321K | 408 | 0.6/0.2 | -/- | 0.0/0.0 | OK/OK | OK/OK | stop,fsh/OK | 0.9/0.9/1.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | | 0.0/0.0/0.0 | orfchr12.163600 |
| 30 | chr12:-27638K | 336 | 0.6/0.2 | -/- | 0.9/0.0 | fsh/fsh | fsh/fsh | fsh/fsh | 1.0/1.0/1.0 | 1.0 | 502.0 | 0.0 | 0.0 | 0.1 | | 0.0/0.0/0.0 | orfchr12.166662 |
| 31 | chr12:-27807K | 561 | 0.9/0.5 | -/- | 0.8/0.0 | fsh,stop/fsh | fsh,stop/fsh | stop/OK | 1.0/1.0/1.0 | 0.0 | 102.0 | 0.0 | 0.0 | 0.7 | xt | 0.0/0.0/0.0 | orfchr12.166728 |
| 32 | chr12:-120734K | 399 | 0.9/0.4 | -/- | 0.9/0.0 | fsh,stop/fsh,stop | fsh,warnN,stop/stop,fsh,warnN | stop,fsh/fsh,stop | 0.8/0.8/0.9 | 0.0 | 462.0 | 0.2 | 0.0 | 0.3 | | 0.0/0.0/0.0 | orfchr12.202585 |
| 33 | chr13:+101845K | 342 | 0.8/0.4 | -/- | 1.0/0.0 | stop,fsh/fsh,stop | stop,fsh/stop,fsh | fsh/fsh | 0.7/0.9/0.6 | 0.0 | 0.0 | 0.4 | 0.0 | 0.4 | | 0.0/7.0/0.0 | orfchr13.240333 |
| 34 | chr13:+110157K | 297 | 1.0/0.1 | -/- | 1.0/0.0 | stop,fsh/fsh,stop | fsh/noaln | fsh/fsh | 0.5/0.0/0.4 | 0.0 | 509.0 | 0.0 | 0.0 | 0.1 | | 0.0/0.0/0.0 | orfchr13.244385 |
| 35 | chr14:+73170K | 594 | 0.8/0.4 | 0.7/0.9 | 0.0/0.0 | noaln/noaln | stop,fsh/stop,fsh | stop,fsh/fsh,stop | 0.7/0.9/0.9 | 0.0 | 0.0 | 0.9 | 0.0 | 0.8 | n | 0.0/0.0/2.0 | orfchr14.270759 |
| 36 | chr14:-93880K | 309 | 0.3/0.1 | 0.4/0.1 | 0.6/0.0 | fsh,stop/fsh,stop | stop,fsh/fsh | stop,fsh/stop,fsh | 0.5/0.4/0.9 | 0.0 | 120.0 | 0.0 | 0.0 | 0.4 | t | 0.0/0.0/0.0 | orfchr14.280588 |
| 37 | chr14:-103233K | 312 | 0.9/0.2 | -/- | 1.0/0.0 | fsh,stop/fsh,stop | noaln/noaln | stop,fsh/fsh,stop | 0.1/0.0/0.7 | 0.0 | 144.0 | 0.0 | 0.0 | 0.2 | | 0.0/0.0/2.0 | orfchr14.288576 |
| 38 | chr15:+63156K | 1377 | 0.9/0.9 | 0.2/0.9 | 0.0/0.0 | OK/OK | stop,fsh/fsh,stop | fsh,stop/fsh | 1.0/1.0/1.0 | 0.0 | 0.0 | 0.9 | 0.0 | 1.0 | nsx | 0.0/0.0/1.0 | orfchr15.318715 |
| 39 | chr16:+11214K | 963 | 0.6/0.4 | -/- | 0.2/0.0 | stop,fsh/fsh,stop | fsh,stop,errN/fsh,errN | fsh,stop,errN/fsh,stop,errN | 0.6/0.1/0.9 | 0.0 | 0.0 | 0.0 | 0.0 | 0.2 | | 0.0/0.0/0.0 | orfchr16.356591 |
| No | Gene | Len. | Blast qCov/tCov | Domain qCov/tCov | EST all/spliced | Clean m full/part | Clean r full/part | Clean d full/part | Synteny m/r/d | Dupl. | Incompl. | CpG | OR | lr prob. | Ensemble/nscan/sgp/ eXoniphy/transmap | PET/SAGE/CAGE | id |
| 40 | chr16:+65084K | 480 | 0.6/0.2 | -/- | 0.9/0.0 | noaln/noaln | noaln/noaln | fsh,stop/fsh,stop | 0.0/0.0/0.9 | 0.0 | 0.0 | 0.0 | 0.0 | 0.3 | | 0.0/0.0/0.0 | orfchr16.380107 |
| 41 | chr16:+86414K | 303 | 0.6/0.2 | -/- | 1.0/0.0 | fsh,stop/fsh | noaln/noaln | fsh/fsh | 0.1/0.0/0.2 | 0.0 | 345.0 | 0.0 | 0.0 | 0.1 | | 0.0/0.0/0.0 | orfchr16.395288 |
| 42 | chr16:+87763K | 516 | 0.7/0.4 | -/- | 0.7/0.0 | noaln/noaln | noaln/noaln | stop,fsh/stop,fsh | 0.0/0.0/0.7 | 0.0 | 371.0 | 0.0 | 0.0 | 0.1 | | 0.0/0.0/1.0 | orfchr16.398515 |
| 43 | chr16:-176K | 1797 | 0.7/0.8 | -/- | 0.2/0.0 | fsh,stop/fsh,stop | fsh,stop/fsh,stop | fsh,stop/noaln | 0.2/0.1/0.0 | 0.0 | 120.0 | 0.7 | 0.0 | 0.2 | | 0.0/5.0/0.0 | orfchr16.345060 |
| 44 | chr16:-74287K | 234 | 0.8/0.3 | 0.6/0.8 | 0.0/0.0 | stop,fsh/stop | fsh,stop/fsh,stop | fsh,stop/OK | 1.0/0.9/1.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.1 | | 0.0/0.0/0.0 | orfchr16.386698 |
| 45 | chr16:-80457K | 1641 | 0.7/0.6 | -/- | 0.0/0.0 | stop/noaln | fsh,stop/fsh | fsh,stop/stop,fsh | 0.0/0.1/0.3 | 0.0 | 0.0 | 0.0 | 0.0 | 0.1 | | 0.0/0.0/0.0 | orfchr16.389898 |
| 46 | chr17:+145K | 1740 | 0.9/0.4 | -/- | 0.3/0.0 | noaln/noaln | fsh/fsh | noaln/noaln | 0.0/0.1/0.0 | 0.0 | 513.0 | 0.0 | 0.0 | 0.1 | | 0.0/0.0/0.0 | orfchr17.400365 |
| 47 | chr17:+717K | 561 | 0.8/0.8 | -/- | 0.9/0.0 | fsh,stop/fsh,stop | noaln/noaln | stop,fsh/fsh | 0.3/0.0/0.4 | 0.0 | 426.0 | 0.0 | 0.0 | 0.1 | | 0.0/0.0/0.0 | orfchr17.400970 |
| 48 | chr17:+7174K | 507 | 1.0/0.3 | -/- | 0.0/0.0 | OK/OK | OK/OK | OK/OK | 0.9/0.9/1.0 | 0.0 | 108.0 | 0.0 | 0.0 | 0.1 | t | 0.0/0.0/4.0 | orfchr17.406837 |
| 49 | chr17:+7178K | 273 | 0.9/0.2 | -/- | 0.0/0.0 | fsh,stop/OK | stop,fsh/OK | fsh,stop/OK | 1.0/1.0/1.0 | 0.0 | 179.0 | 0.0 | 0.0 | 0.1 | st | 0.0/0.0/0.0 | orfchr17.406841 |
| 50 | chr17:+21955K | 297 | -/- | 1.0/1.0 | 0.0/0.0 | OK/OK | OK/OK | OK/OK | 1.0/1.0/1.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.1 | x | 0.0/0.0/14.0 | orfchr17.418007 |
| 51 | chr17:+33920K | 330 | 0.8/0.1 | -/- | 1.0/0.0 | OK/OK | OK/OK | fsh/fsh | 1.0/1.0/0.3 | 0.0 | 705.0 | 1.0 | 0.0 | 0.2 | xt | 0.0/8.0/2.0 | orfchr17.425960 |
| 52 | chr17:+36600K | 753 | 0.3/0.4 | -/- | 0.0/0.0 | fsh/fsh | fsh/fsh | fsh/fsh | 0.8/0.9/0.8 | 0.0 | 0.0 | 0.0 | 0.0 | 0.7 | nx | 0.0/0.0/0.0 | orfchr17.428399 |
| 53 | chr17:+68099K | 366 | 0.6/0.1 | -/- | 1.0/0.0 | fsh,stop/fsh | fsh/fsh | stop,fsh/fsh | 0.8/0.8/0.7 | 0.0 | 469.0 | 0.5 | 0.0 | 0.3 | | 0.0/0.0/0.0 | orfchr17.447189 |
| 54 | chr17:+76984K | 333 | 0.5/0.3 | -/- | 1.0/0.0 | fsh/fsh | fsh/fsh | fsh/fsh | 0.9/0.9/0.9 | 0.0 | 0.0 | 1.0 | 0.0 | 0.5 | | 0.0/1.0/12.0 | orfchr17.459193 |
| 55 | chr17:+77454K | 378 | 0.9/0.5 | -/- | 1.0/0.0 | noaln/noaln | fsh,stop/fsh,stop | stop,fsh/fsh,stop | 0.0/0.6/0.9 | 0.0 | 0.0 | 0.0 | 0.0 | 0.4 | | 0.0/0.0/4.0 | orfchr17.460034 |
| 56 | chr17:+78647K | 804 | 0.8/0.4 | -/- | 0.4/0.0 | fsh/fsh | fsh/fsh | fsh,stop/fsh | 0.1/0.1/0.8 | 0.0 | 56.0 | 0.0 | 0.0 | 0.1 | | 0.0/0.0/0.0 | orfchr17.462419 |
| 57 | chr17:-30899K | 516 | 1.0/0.2 | -/- | 0.0/0.0 | OK/OK | OK/OK | OK/OK | 1.0/1.0/1.0 | 0.0 | 324.0 | 0.0 | 0.0 | 0.0 | | 0.0/0.0/0.0 | orfchr17.423688 |
| 58 | chr17:-31267K | 429 | 1.0/0.3 | -/- | 0.0/0.0 | fsh/fsh | fsh/fsh | OK/OK | 1.0/1.0/0.8 | 0.0 | 1539.0 | 0.0 | 0.0 | 0.0 | | 0.0/0.0/0.0 | orfchr17.423962 |
| 59 | chr17:-36859K | 357 | 0.2/0.1 | -/- | 0.8/0.0 | stop,fsh/fsh,stop | fsh,stop/fsh,stop | fsh,stop/fsh,stop | 1.0/0.9/1.0 | 0.0 | 344.0 | 0.0 | 0.0 | 0.3 | x | 0.0/0.0/0.0 | orfchr17.428660 |
| No | Gene | Len. | Blast qCov/tCov | Domain qCov/tCov | EST all/spliced | Clean m full/part | Clean r full/part | Clean d full/part | Synteny m/r/d | Dupl. | Incompl. | CpG | OR | lr prob. | Ensemble/nscan/sgp/ eXoniphy/transmap | PET/SAGE/CAGE | id |
| 60 | chr17:-39457K | 339 | 0.5/0.0 | -/- | 0.7/0.0 | fsh,stop/fsh,stop | noaln/noaln | fsh,stop/fsh,stop | 0.9/0.0/0.9 | 0.0 | 359.0 | 0.0 | 0.0 | 0.1 | | 0.0/0.0/0.0 | orfchr17.431065 |
| 61 | chr17:-46037K | 213 | 0.8/0.2 | -/- | 0.6/0.0 | stop,fsh/fsh,stop | fsh,stop/fsh | fsh,stop/fsh,stop | 0.9/0.9/0.9 | 0.0 | 186.0 | 0.0 | 0.0 | 0.1 | | 0.0/0.0/0.0 | orfchr17.436968 |
| 62 | chr17:-73757K | 363 | 0.3/0.2 | 0.4/0.1 | 0.3/0.0 | fsh,stop/fsh,stop | fsh,errN/errN | fsh,stop/fsh | 0.7/0.0/1.0 | 0.0 | 453.0 | 0.0 | 0.0 | 0.1 | xt | 0.0/0.0/0.0 | orfchr17.453827 |
| 63 | chr17:-78651K | 441 | 0.8/0.0 | -/- | 0.5/0.0 | fsh,stop/fsh,stop | fsh,stop/fsh,stop | fsh,stop/fsh,stop | 0.9/0.6/0.6 | 0.0 | 48.0 | 0.8 | 0.0 | 0.1 | | 0.0/0.0/0.0 | orfchr17.462433 |
| 64 | chr18:+8503K | 585 | 0.9/0.3 | -/- | 0.0/0.0 | fsh/OK | fsh/OK | fsh,stop/fsh,stop | 1.0/1.0/1.0 | 0.0 | 351.0 | 0.0 | 0.0 | 0.7 | ns | 0.0/0.0/0.0 | orfchr18.467844 |
| 65 | chr18:-13605K | 363 | 0.9/0.1 | -/- | 0.6/0.0 | fsh,stop/fsh,stop | fsh,stop/fsh,stop | fsh,stop/fsh | 0.9/0.9/0.7 | 0.0 | 0.0 | 0.0 | 0.0 | 0.2 | | 0.0/0.0/0.0 | orfchr18.471050 |
| 66 | chr18:-70801K | 1059 | 0.9/0.4 | -/- | 0.3/0.0 | noaln/noaln | noaln/noaln | stop/OK | 0.0/0.0/0.1 | 0.0 | 9.0 | 0.0 | 0.0 | 0.1 | | 0.0/0.0/0.0 | orfchr18.494475 |
| 67 | chr18:-75435K | 348 | 0.9/0.1 | -/- | 1.0/0.0 | fsh/fsh | fsh,stop/fsh,stop | noaln/noaln | 0.7/0.7/0.0 | 0.0 | 255.0 | 0.0 | 0.0 | 0.1 | | 0.0/0.0/0.0 | orfchr18.499684 |
| 68 | chr19:+1251K | 522 | 0.4/0.3 | -/- | 1.0/0.0 | fsh,stop/fsh,stop | fsh,stop/fsh,stop | noaln/noaln | 0.7/0.6/0.0 | 0.0 | 105.0 | 0.0 | 0.0 | 0.5 | t | 1.0/0.0/0.0 | orfchr19.502692 |
| 69 | chr19:+40049K | 393 | 1.0/0.4 | 1.0/0.4 | 0.8/0.0 | fsh,stop/fsh,stop | noaln/noaln | fsh/OK | 1.0/0.0/1.0 | 0.0 | 154.0 | 0.0 | 0.0 | 0.4 | | 0.0/1.0/0.0 | orfchr19.529548 |
| 70 | chr19:+52424K | 405 | 0.5/0.3 | -/- | 1.0/0.0 | fsh,stop/fsh,stop | noaln/noaln | fsh,stop/fsh,stop | 0.8/0.0/1.0 | 0.0 | 597.0 | 0.0 | 0.0 | 0.2 | | 0.0/0.0/2.0 | orfchr19.539712 |
| 71 | chr19:+53876K | 234 | 1.0/0.2 | 1.0/0.2 | 1.0/0.0 | OK/OK | OK/OK | OK/OK | 1.0/1.0/1.0 | 0.0 | 817.0 | 0.7 | 0.0 | 0.4 | xt | 0.0/0.0/0.0 | orfchr19.540679 |
| 72 | chr19:+55759K | 270 | 0.9/0.3 | -/- | 1.0/0.0 | fsh,stop/fsh,stop | noaln/noaln | fsh,stop/fsh,stop | 0.9/0.0/1.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.5 | | 0.0/0.0/1.0 | orfchr19.542520 |
| 73 | chr19:+55954K | 735 | 0.9/0.6 | 0.8/0.7 | 1.0/0.0 | fsh,stop/fsh,stop | fsh,stop/fsh,stop | noaln/noaln | 1.0/1.0/0.0 | 0.0 | 329.0 | 0.0 | 0.0 | 0.2 | | 0.0/0.0/0.0 | orfchr19.542702 |
| 74 | chr19:+63742K | 4014 | 1.0/0.9 | 0.2/0.5 | 0.0/0.0 | fsh,stop/noaln | fsh,stop/noaln | fsh,stop/fsh,stop | 0.1/0.0/0.1 | 0.9 | 427.0 | 0.0 | 0.0 | 0.9 | | 0.0/0.0/0.0 | orfchr19.549567 |
| 75 | chr19:-355K | 1368 | -/- | 0.2/0.1 | 0.0/0.0 | fsh,stop/fsh,stop | noaln/noaln | fsh,stop/fsh | 0.2/0.0/0.2 | 0.0 | 0.0 | 0.0 | 0.0 | 0.1 | t | 0.0/0.0/0.0 | orfchr19.501002 |
| 76 | chr19:-363K | 639 | 0.6/0.1 | -/- | 0.5/0.0 | fsh,stop/fsh,stop | fsh,stop/fsh,stop | fsh,stop/fsh,stop | 0.2/0.5/0.8 | 0.0 | 228.0 | 0.0 | 0.0 | 0.1 | | 0.0/1.0/0.0 | orfchr19.501024 |
| 77 | chr19:-554K | 345 | 0.8/0.3 | -/- | 0.8/0.0 | fsh/fsh,stop | fsh,stop/fsh,stop | fsh/fsh | 0.6/0.8/0.6 | 0.0 | 458.0 | 0.0 | 0.0 | 0.1 | | 0.0/0.0/0.0 | orfchr19.501265 |
| 78 | chr19:-2240K | 810 | 0.3/0.1 | -/- | 0.4/0.0 | fsh/fsh | fsh/fsh,stop | fsh,stop/fsh,stop | 0.2/0.1/0.6 | 0.0 | 0.0 | 0.0 | 0.0 | 0.2 | t | 0.0/0.0/1.0 | orfchr19.504409 |
| 79 | chr19:-9822K | 456 | 0.4/0.3 | -/- | 0.0/0.0 | fsh,stop/fsh,stop | fsh,stop/fsh | fsh,stop/fsh,stop | 0.8/0.8/0.8 | 0.0 | 0.0 | 0.0 | 0.0 | 0.1 | t | 0.0/0.0/0.0 | orfchr19.511951 |
| No | Gene | Len. | Blast qCov/tCov | Domain qCov/tCov | EST all/spliced | Clean m full/part | Clean r full/part | Clean d full/part | Synteny m/r/d | Dupl. | Incompl. | CpG | OR | lr prob. | Ensemble/nscan/sgp/ eXoniphy/transmap | PET/SAGE/CAGE | id |
| 80 | chr19:-22492K | 501 | 0.5/0.2 | -/- | 0.9/0.0 | noaln/noaln | noaln/noaln | fsh,stop/fsh,stop | 0.0/0.0/0.9 | 1.0 | 60.0 | 1.0 | 0.0 | 0.2 | x | 0.0/0.0/2.0 | orfchr19.522928 |
| 81 | chr19:-38418K | 612 | 0.8/0.1 | -/- | 0.9/0.0 | fsh,stop/fsh,stop | fsh,stop/fsh,stop | fsh,stop/fsh,stop | 0.8/0.9/0.9 | 0.0 | 373.0 | 0.0 | 0.0 | 0.4 | | 0.0/0.0/0.0 | orfchr19.527980 |
| 82 | chr19:-47478K | 351 | 0.7/0.3 | -/- | 0.5/0.0 | fsh,stop/fsh,stop | fsh,stop/fsh,stop | fsh,stop/fsh,stop | 0.7/0.7/1.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.2 | | 0.0/0.0/0.0 | orfchr19.535889 |
| 83 | chr19:-51623K | 615 | 0.7/0.4 | -/- | 0.2/0.0 | OK/OK | OK/OK | OK/OK | 1.0/1.0/1.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.2 | x | 0.0/0.0/8.0 | orfchr19.539030 |
| 84 | chr19:-63634K | 345 | 0.8/0.2 | -/- | 1.0/0.0 | noaln/noaln | noaln/noaln | fsh,stop/fsh | 0.0/0.0/0.9 | 0.0 | 318.0 | 0.0 | 0.0 | 0.2 | | 0.0/0.0/0.0 | orfchr19.549391 |
| 85 | chr2:+6045K | 423 | 0.4/0.1 | -/- | 1.0/0.0 | fsh/fsh,stop | fsh/fsh | noaln/noaln | 0.3/0.3/0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.1 | | 0.0/0.0/0.0 | orfchr2.775801 |
| 86 | chr2:+21214K | 5316 | 1.0/0.8 | 0.5/1.0 | 0.2/0.0 | fsh,stop/fsh,stop | fsh/fsh | fsh/fsh | 1.0/1.0/1.0 | 0.0 | 492.0 | 0.0 | 0.0 | 1.0 | x | 0.0/0.0/1.0 | orfchr2.784670 |
| 87 | chr2:+74495K | 438 | 0.5/0.2 | -/- | 0.8/0.0 | fsh,stop/fsh,stop | fsh,stop/fsh,stop | fsh,stop/fsh,stop | 0.9/0.9/1.0 | 0.0 | 63.0 | 1.0 | 0.0 | 0.7 | xt | 0.0/0.0/2.0 | orfchr2.809752 |
| 88 | chr2:+118377K | 219 | 1.0/0.2 | 0.7/0.2 | 0.3/0.0 | OK/OK | OK/OK | OK/OK | 1.0/1.0/1.0 | 0.0 | 123.0 | 0.0 | 0.4 | 0.1 | xt | 0.0/0.0/0.0 | orfchr2.829567 |
| 89 | chr2:+134625K | 1323 | 0.8/0.5 | -/- | 0.3/0.0 | noaln/noaln | fsh,errN/fsh,errN | fsh,stop/fsh | 0.0/0.0/0.1 | 0.0 | 378.0 | 0.0 | 0.0 | 0.1 | | 0.0/0.0/0.0 | orfchr2.840162 |
| 90 | chr2:+213405K | 1215 | 0.7/0.6 | 0.6/1.0 | 0.2/0.0 | fsh,stop/fsh | fsh,stop/fsh | fsh,stop/fsh,stop | 1.0/1.0/0.7 | 0.0 | 0.0 | 1.0 | 0.0 | 0.5 | s | 0.0/0.0/0.0 | orfchr2.865989 |
| 91 | chr2:+220008K | 468 | 0.9/0.2 | 0.5/1.0 | 0.8/0.0 | fsh,stop/fsh | fsh/fsh | fsh/fsh | 1.0/1.0/1.0 | 0.0 | 211.0 | 1.0 | 0.0 | 0.8 | xt | 0.0/0.0/5.0 | orfchr2.869786 |
| 92 | chr2:+234177K | 414 | 1.0/0.3 | 1.0/0.3 | 0.0/0.0 | fsh/OK | fsh/OK | fsh/OK | 1.0/1.0/1.0 | 0.0 | 438.0 | 0.0 | 0.0 | 0.1 | t | 0.0/0.0/1.0 | orfchr2.877083 |
| 93 | chr2:-128850K | 261 | 0.6/0.1 | -/- | 1.0/0.0 | fsh,stop/fsh,stop | fsh,stop/fsh,stop | fsh,stop/fsh,stop | 0.7/0.7/0.9 | 0.0 | 0.0 | 0.0 | 0.0 | 0.5 | | 0.0/0.0/0.0 | orfchr2.835681 |
| 94 | chr2:-236138K | 873 | 0.7/0.7 | -/- | 0.6/0.0 | fsh,stop/fsh,stop | fsh,stop/fsh,stop | fsh,stop/fsh | 0.2/0.2/0.2 | 0.0 | 0.0 | 0.0 | 0.0 | 0.2 | | 0.0/0.0/0.0 | orfchr2.878813 |
| 95 | chr2:-238694K | 423 | 0.7/0.2 | -/- | 0.7/0.0 | fsh,stop/fsh,stop | fsh,stop/fsh,stop | fsh/fsh,stop | 0.9/0.9/0.8 | 0.0 | 744.0 | 0.0 | 0.0 | 0.1 | | 0.0/0.0/0.0 | orfchr2.881463 |
| 96 | chr20:+1806K | 360 | 0.7/0.1 | -/- | 1.0/0.0 | fsh/fsh | fsh,stop/fsh | fsh/fsh | 0.9/0.9/0.9 | 0.0 | 0.0 | 0.0 | 0.0 | 0.4 | | 0.0/0.0/0.0 | orfchr20.674798 |
| 97 | chr20:+4750K | 540 | 0.4/0.0 | -/- | 0.6/0.0 | fsh,stop/fsh,stop | fsh,stop/fsh,stop | fsh,stop/fsh | 0.8/0.7/0.9 | 0.0 | 81.0 | 0.0 | 0.0 | 0.3 | | 0.0/0.0/1.0 | orfchr20.676897 |
| 98 | chr20:+42528K | 597 | 0.6/0.0 | -/- | 1.0/0.0 | fsh,stop/fsh,stop | fsh,stop/fsh,stop | fsh,stop/fsh,stop | 0.5/0.8/0.9 | 0.0 | 84.0 | 0.0 | 0.0 | 0.6 | e | 0.0/0.0/0.0 | orfchr20.696083 |
| 99 | chr20:+60066K | 1812 | 0.9/0.8 | -/- | 0.6/0.0 | fsh,stop/noaln | fsh/noaln | fsh,stop/noaln | 0.0/0.0/0.1 | 0.0 | 48.0 | 0.0 | 0.0 | 0.5 | | 0.0/0.0/0.0 | orfchr20.707733 |
| No | Gene | Len. | Blast qCov/tCov | Domain qCov/tCov | EST all/spliced | Clean m full/part | Clean r full/part | Clean d full/part | Synteny m/r/d | Dupl. | Incompl. | CpG | OR | lr prob. | Ensemble/nscan/sgp/ eXoniphy/transmap | PET/SAGE/CAGE | id |
| 100 | chr20:+61582K | 465 | 0.9/0.2 | -/- | 1.0/0.0 | fsh,stop/fsh | noaln/noaln | noaln/noaln | 0.3/0.0/0.0 | 0.0 | 165.0 | 0.5 | 0.0 | 0.1 | | 0.0/0.0/0.0 | orfchr20.711206 |
| 101 | chr20:-34145K | 306 | 0.9/0.3 | -/- | 0.5/0.0 | fsh,stop/fsh,stop | fsh,stop/fsh,stop | fsh,stop/fsh,stop | 1.0/0.9/1.0 | 0.0 | 160.0 | 0.0 | 0.0 | 0.1 | | 0.0/0.0/0.0 | orfchr20.691210 |
| 102 | chr21:+36326K | 1053 | 0.6/0.1 | -/- | 0.3/0.0 | noaln/noaln | noaln/noaln | fsh,stop/fsh,stop | 0.0/0.0/0.7 | 0.0 | 35.0 | 0.0 | 0.0 | 0.2 | | 0.0/0.0/0.0 | orfchr21.721002 |
| 103 | chr21:+44453K | 378 | 0.7/0.2 | -/- | 0.8/0.0 | noaln/noaln | fsh,stop/fsh,stop | fsh/fsh | 0.0/0.9/0.3 | 0.0 | 165.0 | 0.0 | 0.0 | 0.1 | | 0.0/0.0/0.0 | orfchr21.728381 |
| 104 | chr21:-30583K | 309 | 0.8/0.5 | -/- | 1.0/0.0 | fsh,stop/fsh,stop | noaln/noaln | OK/OK | 0.9/0.0/1.0 | 0.0 | 303.0 | 0.0 | 0.0 | 0.3 | e | 0.0/0.0/0.0 | orfchr21.717659 |
| 105 | chr21:-38499K | 396 | 0.6/0.1 | -/- | 1.0/0.0 | noaln/noaln | noaln/noaln | fsh/fsh | 0.0/0.0/1.0 | 0.0 | 474.0 | 0.0 | 0.0 | 0.2 | | 0.0/0.0/0.0 | orfchr21.722390 |
| 106 | chr22:+40697K | 1686 | 0.4/0.6 | -/- | 0.2/0.0 | fsh,stop/fsh | fsh,stop/fsh | fsh,stop/fsh | 0.9/0.9/0.9 | 0.0 | 0.0 | 0.0 | 0.0 | 0.7 | | 0.0/0.0/0.0 | orfchr22.757002 |
| 107 | chr22:-21905K | 243 | 0.8/0.2 | -/- | 1.0/0.0 | noaln/noaln | noaln/noaln | fsh,stop/fsh,stop | 0.0/0.0/0.6 | 0.0 | 129.0 | 0.0 | 0.0 | 0.2 | | 0.0/0.0/0.0 | orfchr22.743111 |
| 108 | chr22:-39378K | 567 | 0.7/0.1 | -/- | 0.5/0.0 | fsh,stop/fsh,stop | noaln/noaln | fsh,stop/fsh,stop | 0.6/0.0/0.9 | 0.0 | 0.0 | 0.0 | 0.0 | 0.1 | | 0.0/0.0/0.0 | orfchr22.756020 |
| 109 | chr22:-40698K | 654 | 0.6/0.0 | -/- | 0.0/0.0 | stop/OK | stop/stop | fsh,stop/fsh,stop | 0.9/0.9/0.8 | 0.0 | 273.0 | 0.0 | 0.0 | 0.0 | | 0.0/0.0/0.0 | orfchr22.756998 |
| 110 | chr22:-45633K | 1791 | 0.9/0.8 | -/- | 0.1/0.0 | noaln/noaln | noaln/noaln | fsh,stop/fsh | 0.0/0.0/0.1 | 0.0 | 276.0 | 0.8 | 0.0 | 0.1 | | 0.0/0.0/0.0 | orfchr22.762818 |
| 111 | chr22:-45844K | 1743 | 0.9/0.8 | -/- | 0.0/0.0 | fsh,stop/noaln | fsh,stop/OK | fsh,stop/noaln | 0.1/0.1/0.1 | 0.0 | 18.0 | 0.0 | 0.0 | 0.1 | | 0.0/0.0/0.0 | orfchr22.763128 |
| 112 | chr22:-46874K | 246 | 0.8/0.1 | -/- | 1.0/0.0 | noaln/noaln | noaln/noaln | fsh,stop/fsh,stop | 0.0/0.0/0.8 | 0.0 | 150.0 | 0.0 | 0.0 | 0.2 | | 0.0/0.0/0.0 | orfchr22.764249 |
| 113 | chr22:-49471K | 1806 | 0.2/0.1 | -/- | 0.0/0.0 | fsh,stop/noaln | fsh,stop/noaln | fsh,stop/noaln | 0.1/0.1/0.1 | 0.0 | 0.0 | 0.0 | 0.0 | 0.1 | | 0.0/0.0/0.0 | orfchr22.769598 |
| 114 | chr3:+47029K | 306 | 0.6/0.3 | -/- | 0.4/0.0 | stop,fsh/stop,fsh | stop,fsh/stop,fsh | fsh/fsh | 1.0/1.0/1.0 | 0.0 | 508.0 | 0.0 | 0.0 | 0.2 | xt | 0.0/1.0/0.0 | orfchr3.909922 |
| 115 | chr3:+131465K | 516 | -/- | 0.6/0.5 | 0.0/0.0 | fsh/fsh | stop,fsh/fsh | stop,fsh/fsh | 1.0/1.0/1.0 | 0.0 | 0.0 | 0.7 | 0.0 | 0.2 | x | 0.0/0.0/0.0 | orfchr3.944031 |
| 116 | chr3:+131765K | 417 | 0.9/0.3 | 0.7/0.6 | 0.0/0.0 | OK/OK | stop,fsh/OK | OK/OK | 1.0/1.0/1.0 | 0.0 | 252.0 | 0.0 | 0.0 | 0.1 | xt | 0.0/0.0/0.0 | orfchr3.944150 |
| 117 | chr3:+131767K | 504 | 1.0/0.7 | 0.8/0.8 | 0.0/0.0 | fsh/OK | fsh/OK | fsh/OK | 1.0/1.0/1.0 | 0.0 | 168.0 | 0.0 | 0.0 | 0.7 | xt | 0.0/0.0/0.0 | orfchr3.944155 |
| 118 | chr3:+131768K | 510 | 1.0/0.8 | 0.8/0.9 | 0.0/0.0 | stop/OK | stop/OK | OK/OK | 1.0/1.0/1.0 | 0.0 | 348.0 | 0.0 | 0.0 | 0.3 | xt | 0.0/0.0/0.0 | orfchr3.944162 |
| 119 | chr3:+131772K | 513 | 0.9/0.7 | 0.8/0.8 | 0.0/0.0 | OK/OK | OK/OK | OK/OK | 1.0/1.0/1.0 | 0.0 | 141.0 | 0.0 | 0.0 | 0.3 | xt | 0.0/0.0/0.0 | orfchr3.944180 |
| No | Gene | Len. | Blast qCov/tCov | Domain qCov/tCov | EST all/spliced | Clean m full/part | Clean r full/part | Clean d full/part | Synteny m/r/d | Dupl. | Incompl. | CpG | OR | lr prob. | Ensemble/nscan/sgp/ eXoniphy/transmap | PET/SAGE/CAGE | id |
| 120 | chr3:+131776K | 636 | 0.9/0.9 | 0.8/1.0 | 0.0/0.0 | stop,fsh/stop,fsh | stop,fsh/stop,fsh | stop,fsh/fsh | 1.0/1.0/1.0 | 0.0 | 39.0 | 0.0 | 0.0 | 0.5 | xt | 0.0/0.0/0.0 | orfchr3.944184 |
| 121 | chr3:+157237K | 756 | 1.0/0.3 | 0.8/0.8 | 0.0/0.0 | stop,fsh/OK | stop,fsh/OK | stop,fsh/stop,fsh | 1.0/1.0/1.0 | 0.0 | 297.0 | 0.0 | 0.0 | 0.3 | xt | 0.0/0.0/0.0 | orfchr3.954104 |
| 122 | chr3:+181318K | 405 | 0.8/0.0 | -/- | 0.0/0.0 | noaln/noaln | noaln/noaln | stop,fsh/stop,fsh | 0.0/0.0/0.2 | 0.0 | 24.0 | 0.0 | 0.0 | 0.1 | n | 0.0/0.0/0.0 | orfchr3.960599 |
| 123 | chr3:-49888K | 315 | 0.7/0.1 | -/- | 1.0/0.0 | fsh/OK | fsh/OK | fsh/OK | 1.0/1.0/1.0 | 0.0 | 1507.0 | 0.0 | 0.0 | 0.3 | t | 0.0/0.0/0.0 | orfchr3.912685 |
| 124 | chr3:-63873K | 432 | 0.8/0.2 | -/- | 0.2/0.0 | stop,fsh/stop,fsh | stop,fsh/stop,fsh | fsh,stop/stop,fsh | 0.9/0.9/1.0 | 0.0 | 235.0 | 1.0 | 0.0 | 0.1 | xt | 0.0/2.0/2.0 | orfchr3.921315 |
| 125 | chr3:-185700K | 588 | 0.4/0.3 | 0.4/0.5 | 0.4/0.0 | stop,fsh/stop,fsh | stop,fsh/stop,fsh | stop,fsh/stop,fsh | 0.9/0.9/1.0 | 0.0 | 435.0 | 0.0 | 0.0 | 0.4 | xt | 0.0/0.0/0.0 | orfchr3.962410 |
| 126 | chr4:+71199K | 1365 | 0.3/0.0 | 0.3/0.1 | 0.0/0.0 | stop,fsh/stop,fsh | stop,fsh/stop,fsh | stop,fsh/fsh | 0.6/0.6/0.9 | 0.0 | 162.0 | 0.0 | 0.0 | 0.2 | | 0.0/0.0/0.0 | orfchr4.996806 |
| 127 | chr4:+147363K | 201 | -/- | 1.0/0.5 | 1.0/0.0 | fsh/OK | fsh/fsh | stop,fsh/fsh | 1.0/1.0/1.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.5 | | 0.0/0.0/0.0 | orfchr4.1016929 |
| 128 | chr4:-2239K | 471 | 0.8/0.3 | -/- | 0.7/0.0 | stop,fsh/stop,fsh | noaln/noaln | stop,fsh/fsh | 0.9/0.0/0.8 | 0.0 | 0.0 | 0.0 | 0.0 | 0.3 | | 0.0/0.0/0.0 | orfchr4.972769 |
| 129 | chr4:-2239K | 273 | 0.8/0.1 | -/- | 0.5/0.0 | stop,fsh/fsh | noaln/noaln | stop,fsh/stop,fsh | 0.3/0.0/0.9 | 0.0 | 0.0 | 0.0 | 0.0 | 0.1 | | 0.0/0.0/0.0 | orfchr4.972773 |
| 130 | chr4:-4020K | 450 | 0.7/0.2 | 0.4/0.2 | 0.0/0.0 | noaln/noaln | noaln/noaln | stop,fsh/OK | 0.0/0.0/1.0 | 1.0 | 284.0 | 0.0 | 0.0 | 0.2 | nx | 0.0/0.0/0.0 | orfchr4.975108 |
| 131 | chr4:-152399K | 294 | 0.9/0.3 | -/- | 1.0/0.0 | fsh/stop,fsh | stop,fsh/stop,fsh | stop,fsh/stop,fsh | 0.7/0.9/1.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.5 | | 0.0/0.0/0.0 | orfchr4.1018503 |
| 132 | chr5:+52799K | 237 | 0.9/0.2 | -/- | 0.6/0.0 | stop,fsh/stop,fsh | stop,fsh/stop,fsh | stop,fsh/stop,fsh | 1.0/0.9/1.0 | 0.0 | 45.0 | 0.0 | 0.0 | 0.2 | | 0.0/0.0/0.0 | orfchr5.1054203 |
| 133 | chr5:+72065K | 288 | 0.7/0.5 | 0.6/0.5 | 0.0/0.0 | fsh/OK | fsh,errN/errN | fsh/OK | 1.0/0.0/0.9 | 0.0 | 86.0 | 0.0 | 0.0 | 0.1 | t | 0.0/0.0/0.0 | orfchr5.1060972 |
| 134 | chr5:+147603K | 387 | 0.5/0.2 | -/- | 1.0/0.0 | stop,fsh/stop,fsh | stop,fsh/stop,fsh | stop,fsh/stop,fsh | 0.8/0.2/0.9 | 0.0 | 672.0 | 0.0 | 0.0 | 0.2 | | 0.0/0.0/0.0 | orfchr5.1088396 |
| 135 | chr5:+177754K | 2424 | 0.5/0.4 | -/- | 0.1/0.0 | stop,fsh/stop,fsh | fsh/fsh | stop,fsh/stop,fsh | 0.1/0.1/0.1 | 0.0 | 0.0 | 0.8 | 0.0 | 0.5 | | 0.0/0.0/0.0 | orfchr5.1103076 |
| 136 | chr5:-1911K | 681 | 1.0/0.8 | 0.9/0.9 | 0.8/0.0 | noaln/noaln | noaln/noaln | stop,fsh/fsh | 0.0/0.0/0.9 | 0.0 | 324.0 | 0.9 | 0.0 | 0.5 | | 0.0/0.0/0.0 | orfchr5.1035459 |
| 137 | chr5:-54201K | 633 | 0.9/0.1 | -/- | 0.0/0.0 | fsh/OK | fsh/OK | fsh/OK | 1.0/1.0/1.0 | 0.0 | 1600.0 | 0.0 | 0.0 | 0.0 | | 0.0/0.0/0.0 | orfchr5.1054732 |
| 138 | chr5:-54202K | 564 | 1.0/0.2 | -/- | 0.0/0.0 | OK/OK | OK/OK | OK/OK | 1.0/1.0/1.0 | 0.0 | 1689.0 | 0.0 | 0.0 | 0.0 | x | 0.0/0.0/0.0 | orfchr5.1054736 |
| 139 | chr5:-66389K | 486 | 0.5/0.2 | -/- | 1.0/0.0 | stop,fsh/stop,fsh | stop,fsh/stop,fsh | stop,fsh/stop,fsh | 0.9/0.9/1.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.7 | | 0.0/0.0/0.0 | orfchr5.1058756 |
| No | Gene | Len. | Blast qCov/tCov | Domain qCov/tCov | EST all/spliced | Clean m full/part | Clean r full/part | Clean d full/part | Synteny m/r/d | Dupl. | Incompl. | CpG | OR | lr prob. | Ensemble/nscan/sgp/ eXoniphy/transmap | PET/SAGE/CAGE | id |
| 140 | chr5:-102890K | 480 | 0.9/0.1 | -/- | 0.0/0.0 | fsh/OK | fsh/OK | fsh/OK | 1.0/1.0/1.0 | 0.0 | 998.0 | 0.0 | 0.0 | 0.0 | | 0.0/0.0/0.0 | orfchr5.1070309 |
| 141 | chr5:-138756K | 1476 | 0.5/0.1 | -/- | 0.6/0.0 | OK/OK | OK/OK | fsh/OK | 1.0/1.0/1.0 | 0.0 | 567.0 | 1.0 | 0.0 | 0.9 | x | 0.0/1.0/1.0 | orfchr5.1083792 |
| 142 | chr5:-157050K | 405 | 0.4/0.1 | -/- | 1.0/0.0 | fsh/fsh | OK/OK | stop,fsh/stop,fsh | 1.0/0.4/0.7 | 1.0 | 545.0 | 1.0 | 0.0 | 0.1 | x | 0.0/0.0/0.0 | orfchr5.1092758 |
| 143 | chr6:+303K | 429 | 0.8/0.2 | -/- | 1.0/0.0 | stop,fsh/stop,fsh | stop,fsh/stop,fsh | noaln/noaln | 0.7/0.7/0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.2 | | 0.0/0.0/3.0 | orfchr6.1111218 |
| 144 | chr6:+34621K | 423 | 0.9/0.1 | -/- | 0.5/0.0 | noaln/noaln | noaln/noaln | stop,fsh/stop,fsh | 0.0/0.0/1.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.1 | | 0.0/0.0/0.0 | orfchr6.1131092 |
| 145 | chr6:+46828K | 213 | 0.9/0.1 | 0.8/0.9 | 0.0/0.0 | stop,fsh/OK | stop,fsh/OK | stop,fsh/OK | 1.0/1.0/1.0 | 0.0 | 33.0 | 0.0 | 0.0 | 0.2 | x | 0.0/0.0/0.0 | orfchr6.1139952 |
| 146 | chr6:+163953K | 570 | 0.9/0.4 | -/- | 0.0/0.0 | fsh/noaln | stop,fsh/noaln | fsh/OK | 0.1/0.1/0.6 | 0.0 | 63.0 | 0.0 | 0.0 | 0.0 | | 0.0/0.0/0.0 | orfchr6.1177001 |
| 147 | chr6:-1549K | 1284 | 0.3/0.3 | -/- | 0.4/0.0 | stop,fsh/stop,fsh | stop,fsh/stop,fsh | stop,fsh/fsh | 0.9/0.9/0.6 | 0.0 | 0.0 | 0.9 | 0.0 | 0.4 | | 0.0/0.0/4.0 | orfchr6.1112282 |
| 148 | chr6:-42182K | 255 | 0.6/0.0 | -/- | 1.0/0.0 | stop/stop | stop/stop | fsh/fsh | 1.0/1.0/0.8 | 0.0 | 124.0 | 0.0 | 0.0 | 0.4 | | 0.0/4.0/7.0 | orfchr6.1136403 |
| 149 | chr6:-156423K | 684 | -/- | 0.6/0.1 | 0.0/0.0 | stop,fsh/stop,fsh | stop,fsh/stop,fsh | stop,fsh/stop,fsh | 0.8/0.8/0.9 | 0.0 | 0.0 | 0.0 | 0.0 | 0.1 | | 0.0/0.0/0.0 | orfchr6.1172339 |
| 150 | chr7:-5613K | 315 | 0.9/0.1 | -/- | 0.9/0.0 | noaln/noaln | noaln/noaln | stop,fsh/stop,fsh | 0.0/0.0/0.9 | 0.0 | 311.0 | 0.0 | 0.0 | 0.1 | | 0.0/19.0/0.0 | orfchr7.1196258 |
| 151 | chr7:-82419K | 1545 | 1.0/0.1 | -/- | 0.1/0.0 | OK/OK | OK/OK | OK/OK | 1.0/1.0/1.0 | 0.0 | 1707.0 | 0.0 | 0.0 | 0.0 | xt | 0.0/0.0/13.0 | orfchr7.1228706 |
| 152 | chr7:-149187K | 297 | 0.9/0.2 | -/- | 1.0/0.0 | fsh/fsh | stop,fsh/stop,fsh | stop,fsh/stop,fsh | 0.3/0.3/0.4 | 0.0 | 181.0 | 0.0 | 0.0 | 0.2 | | 0.0/0.0/0.0 | orfchr7.1256260 |
| 153 | chr8:+110863K | 420 | 0.8/0.1 | -/- | 0.0/0.0 | OK/OK | OK/OK | noaln/noaln | 0.8/0.8/0.0 | 0.2 | 513.0 | 0.0 | 0.0 | 0.0 | t | 0.0/0.0/0.0 | orfchr8.1312064 |
| 154 | chr8:+145091K | 651 | 0.6/0.2 | -/- | 1.0/0.0 | stop,fsh/stop,fsh | stop,fsh/stop,fsh | stop,fsh/stop,fsh | 0.9/0.9/0.9 | 0.0 | 873.0 | 0.2 | 0.0 | 0.3 | | 0.0/0.0/0.0 | orfchr8.1330100 |
| 155 | chr8:+145175K | 603 | 0.5/0.1 | -/- | 0.2/0.0 | stop,fsh/stop,fsh | noaln/noaln | stop,fsh/stop,fsh | 0.8/0.0/0.9 | 0.0 | 0.0 | 0.1 | 0.0 | 0.1 | | 0.0/0.0/2.0 | orfchr8.1330314 |
| 156 | chr8:-57470K | 330 | 0.9/0.3 | 0.6/0.3 | 0.0/0.0 | OK/OK | OK/OK | OK/OK | 1.0/1.0/0.9 | 0.0 | 42.0 | 0.0 | 0.0 | 0.1 | xt | 0.0/0.0/0.0 | orfchr8.1295382 |
| 157 | chr8:-142629K | 1527 | -/- | 0.7/0.4 | 0.0/0.0 | noaln/noaln | noaln/noaln | fsh/fsh | 0.0/0.0/0.2 | 0.0 | 0.0 | 0.0 | 0.0 | 0.1 | | 0.0/0.0/0.0 | orfchr8.1324791 |
| 158 | chr8:-144235K | 1170 | 0.3/0.1 | -/- | 0.0/0.0 | stop,fsh/stop,fsh | stop,fsh/stop,fsh | stop,fsh/stop,fsh | 0.6/0.4/0.6 | 0.0 | 162.0 | 0.0 | 0.0 | 0.1 | | 0.0/0.0/0.0 | orfchr8.1328124 |
| 159 | chr8:-144861K | 819 | 0.3/0.2 | -/- | 0.2/0.0 | fsh/fsh | fsh/fsh | stop,fsh/fsh | 1.0/1.0/1.0 | 0.0 | 0.0 | 1.0 | 0.0 | 0.5 | ext | 0.0/0.0/3.0 | orfchr8.1329437 |
| No | Gene | Len. | Blast qCov/tCov | Domain qCov/tCov | EST all/spliced | Clean m full/part | Clean r full/part | Clean d full/part | Synteny m/r/d | Dupl. | Incompl. | CpG | OR | lr prob. | Ensemble/nscan/sgp/ eXoniphy/transmap | PET/SAGE/CAGE | id |
| 160 | chr9:+89670K | 255 | 0.5/0.1 | -/- | 0.8/0.0 | stop,fsh/stop,fsh | stop,fsh/stop,fsh | OK/OK | 0.9/0.9/0.6 | 0.0 | 99.0 | 0.0 | 0.0 | 0.1 | | 0.0/0.0/0.0 | orfchr9.1359492 |
| 161 | chr9:+124917K | 522 | 0.6/0.2 | -/- | 0.5/0.0 | stop,fsh/stop,fsh | stop,fsh/stop,fsh | stop,fsh/stop,fsh | 0.6/0.6/0.8 | 0.0 | 156.0 | 0.0 | 0.0 | 0.1 | | 0.0/1.0/0.0 | orfchr9.1377884 |
| 162 | chr9:+132235K | 399 | 0.8/0.6 | 0.7/1.0 | 0.0/0.0 | stop,fsh/fsh | fsh/fsh | fsh/fsh | 0.9/0.9/0.9 | 0.0 | 15.0 | 0.0 | 0.0 | 0.3 | x | 0.0/0.0/0.0 | orfchr9.1383725 |
| 163 | chr9:+132238K | 240 | 0.8/0.1 | 0.4/0.4 | 0.4/0.0 | fsh/fsh | fsh,errN/fsh,errN | stop,fsh/stop,fsh | 0.7/0.0/1.0 | 0.0 | 195.0 | 0.0 | 0.0 | 0.2 | x | 0.0/0.0/0.0 | orfchr9.1383732 |
| 164 | chr9:+132240K | 354 | 1.0/0.4 | 0.7/0.9 | 0.0/0.0 | stop,fsh/stop,fsh | fsh,errN/fsh,errN | stop,fsh/stop,fsh | 0.9/0.0/1.0 | 0.0 | 231.0 | 0.0 | 0.0 | 0.1 | x | 0.0/0.0/0.0 | orfchr9.1383738 |
| 165 | chr9:+132248K | 537 | -/- | 0.4/0.9 | 0.0/0.0 | stop,fsh/stop,fsh | stop,fsh/stop,fsh | fsh/fsh | 0.9/0.8/0.7 | 0.0 | 0.0 | 0.0 | 0.0 | 0.1 | x | 0.0/0.0/0.0 | orfchr9.1383753 |
| 166 | chr9:+139232K | 606 | 0.3/0.1 | -/- | 1.0/0.0 | OK/stop,fsh | OK/OK | OK/stop,fsh | 1.0/1.0/1.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.8 | sxt | 1.0/0.0/20.0 | orfchr9.1395455 |
| 167 | chr9:-34713K | 423 | 1.0/0.3 | -/- | 1.0/0.0 | OK/OK | stop/OK | OK/OK | 1.0/0.9/1.0 | 1.0 | 96.0 | 0.0 | 0.0 | 0.3 | x | 0.0/0.0/0.0 | orfchr9.1344381 |
| 168 | chr9:-113351K | 294 | 0.5/0.1 | -/- | 0.9/0.0 | noaln/noaln | noaln/noaln | stop,fsh/stop,fsh | 0.0/0.0/0.9 | 0.0 | 230.0 | 0.0 | 0.0 | 0.1 | | 0.0/3.0/0.0 | orfchr9.1372271 |
| 169 | chr9:-138285K | 750 | 0.4/0.1 | -/- | 0.0/0.0 | stop,fsh/OK | stop,fsh/OK | fsh/OK | 0.9/0.9/1.0 | 0.0 | 255.0 | 0.0 | 0.0 | 0.1 | | 0.0/0.0/0.0 | orfchr9.1392855 |
| 170 | chrX:+83859K | 465 | 1.0/0.1 | -/- | 0.0/0.0 | fsh/fsh | noaln/noaln | OK/OK | 1.0/1.0/1.0 | 0.0 | 552.0 | 0.0 | 0.0 | 0.0 | t | 0.0/0.0/0.0 | orfchrX.1425470 |
| 171 | chrX:+107104K | 414 | 0.9/0.2 | 0.4/0.3 | 0.0/0.0 | noaln/noaln | noaln/noaln | fsh/OK | 0.0/0.0/1.0 | 0.0 | 998.0 | 0.0 | 0.0 | 0.0 | | 0.0/0.0/0.0 | orfchrX.1430623 |
| 172 | chrX:+107105K | 486 | 0.8/0.1 | -/- | 0.0/0.0 | noaln/noaln | noaln/noaln | OK/OK | 0.0/0.0/1.0 | 0.0 | 1188.0 | 0.0 | 0.0 | 0.0 | | 0.0/0.0/0.0 | orfchrX.1430626 |
| 173 | chrX:+118777K | 948 | 1.0/1.0 | 0.3/1.0 | 1.0/0.0 | fsh/fsh | fsh/fsh | fsh,errN/fsh,errN | 1.0/1.0/0.0 | 0.0 | 165.0 | 0.9 | 0.0 | 1.0 | enxt | 0.0/1.0/9.0 | orfchrX.1434076 |
| 174 | chrX:+137469K | 303 | 1.0/0.9 | 0.9/0.8 | 0.0/0.0 | stop,fsh/stop,fsh | stop,fsh/stop,fsh | fsh/fsh | 0.9/0.9/0.9 | 0.0 | 0.0 | 0.0 | 0.0 | 0.1 | | 0.0/0.0/0.0 | orfchrX.1440341 |
| 175 | chrX:-24078K | 384 | 0.9/0.2 | -/- | 0.0/0.0 | stop,fsh/stop,fsh | fsh/fsh | fsh/fsh | 1.0/1.0/1.0 | 0.0 | 0.0 | 1.0 | 0.0 | 0.1 | xt | 0.0/1.0/3.0 | orfchrX.1408169 |