List of clusters

No Gene Length Blast qCov Blast tCov allEST cleanGenesStatus netSyntenyMm7 netSyntenyRn3 netSyntenyCanFam2 splicedEST pseudoVega pseudoUCSC repeat cpgIsland

1 chr1:+111109K 594 1.0 0.6 0.0 OK 1.0 1.0 1.0 0.0 0.0 0.0 0.0 0.0

2 chr1:+155274K 756 1.0 0.8 0.7 fshift 0.0 0.0 1.0 0.0 0.0 0.0 0.0 0.0

3 chr1:+156134K 693 1.0 0.7 0.0 OK 1.0 1.0 1.0 0.0 0.0 0.0 0.0 0.0

4 chr1:+156381K 831 1.0 0.9 0.6 fshift 1.0 0.9 1.0 0.0 0.0 0.0 0.0 0.0

5 chr1:+179142K 708 0.9 0.8 0.0 fshift 1.0 1.0 1.0 0.0 0.0 0.0 0.0 0.0

6 chr1:+244423K 990 1.0 1.0 0.0 fshift 0.0 0.0 0.9 0.0 0.0 0.0 0.0 0.0

7 chr1:-44273K 2139 0.8 0.9 0.0 fshift 0.4 1.0 0.9 0.0 0.0 0.0 0.0 0.0

8 chr1:-155346K 954 1.0 1.0 0.0 OK 1.0 1.0 1.0 0.0 0.0 0.0 0.0 0.0

9 chr1:-155507K 774 1.0 0.8 0.0 fshift 1.0 1.0 1.0 0.0 0.0 0.0 0.0 0.0

10 chr1:-155526K 417 1.0 0.4 0.0 OK 1.0 1.0 1.0 0.0 0.0 0.0 0.0 0.0

11 chr11:+4356K 840 1.0 0.9 0.0 fshift 1.0 1.0 1.0 0.0 0.0 0.0 0.0 0.0

12 chr11:+4396K 675 1.0 0.7 0.0 OK 1.0 1.0 1.0 0.0 0.0 0.0 0.0 0.0

13 chr11:+4453K 738 1.0 0.8 0.1 fshift 1.0 1.0 0.0 0.0 0.0 0.0 0.0 0.0

14 chr11:+4687K 900 1.0 1.0 0.0 OK 1.0 1.0 1.0 0.0 0.0 0.0 0.0 0.0

15 chr11:+4765K 885 1.0 0.9 0.0 fshift 1.0 1.0 0.0 0.0 0.0 0.0 0.0 0.0

16 chr11:+5015K 612 1.0 0.7 0.0 OK 1.0 1.0 1.0 0.0 0.0 0.0 0.0 0.0

17 chr11:+5047K 837 0.9 0.8 0.0 fshift 1.0 1.0 1.0 0.0 0.0 0.0 0.0 0.0

18 chr11:+5071K 525 1.0 0.6 0.0 OK 1.0 1.0 1.0 0.0 0.0 0.0 0.0 0.0

19 chr11:+5082K 882 0.8 0.8 0.0 fshift 1.0 1.0 1.0 0.0 0.0 0.0 0.0 0.0

20 chr11:+5380K 951 1.0 1.0 0.0 fshift 1.0 1.0 1.0 0.0 0.0 0.0 0.0 0.0

21 chr11:+5705K 417 1.0 0.4 0.0 OK 1.0 1.0 1.0 0.0 0.0 0.0 0.0 0.0

22 chr11:+5743K 888 1.0 0.9 0.0 nons 1.0 1.0 1.0 0.0 0.0 0.0 0.0 0.0

23 chr11:+6106K 867 0.9 0.9 0.0 fshift 1.0 1.0 1.0 0.0 0.0 0.0 0.0 0.0

24 chr11:+7707K 822 1.0 0.8 0.2 fshift 1.0 1.0 1.0 0.0 0.0 0.0 0.0 0.0

25 chr11:+7725K 534 1.0 0.6 0.0 OK 1.0 1.0 1.0 0.0 0.0 0.0 0.0 0.0

26 chr11:+48568K 582 1.0 0.6 0.0 OK 1.0 1.0 1.0 0.0 0.0 0.0 0.0 0.0

27 chr11:+54913K 561 1.0 0.6 0.0 OK 1.0 1.0 0.0 0.0 0.0 0.0 0.0 0.0

28 chr11:+55015K 777 1.0 0.8 0.0 fshift 1.0 1.0 0.0 0.0 0.0 0.0 0.0 0.0

29 chr11:+55250K 813 1.0 0.9 0.0 fshift 1.0 1.0 1.0 0.0 0.0 0.0 0.0 0.0

30 chr11:+55279K 771 1.0 0.8 0.0 fshift 1.0 1.0 1.0 0.0 0.0 0.0 0.0 0.0

31 chr11:+55579K 765 1.0 0.8 0.0 fshift 1.0 1.0 1.0 0.0 0.0 0.0 0.0 0.0

32 chr11:+55595K 690 1.0 0.7 0.0 OK 1.0 1.0 1.0 0.0 0.0 0.0 0.0 0.0

33 chr11:+55607K 423 1.0 0.4 0.0 OK 1.0 1.0 1.0 0.0 0.0 0.0 0.0 0.0

34 chr11:+56495K 897 1.0 1.0 0.0 OK 1.0 1.0 1.0 0.0 0.0 0.0 0.0 0.0

35 chr11:+123534K 675 1.0 0.7 0.0 OK 1.0 1.0 1.0 0.0 0.0 0.0 0.0 0.0

36 chr11:+123561K 939 1.0 1.0 0.0 OK 1.0 1.0 1.0 0.0 0.0 0.0 0.0 0.0

37 chr11:+123591K 801 1.0 0.9 0.6 fshift 1.0 1.0 1.0 0.0 0.0 0.0 0.0 0.0

38 chr11:-4124K 438 1.0 0.5 0.0 OK 1.0 1.0 1.0 0.0 0.0 0.0 0.0 0.0

39 chr11:-4409K 900 1.0 0.9 0.0 OK 1.0 1.0 1.0 0.0 0.0 0.0 0.0 0.0

40 chr11:-4837K 909 1.0 1.0 0.0 fshift 1.0 0.9 1.0 0.0 0.0 0.0 0.0 0.0

41 chr11:-5148K 771 1.0 0.8 0.0 fshift 1.0 0.0 1.0 0.0 0.0 0.0 0.0 0.0

42 chr11:-5156K 840 1.0 0.9 0.0 fshift 1.0 1.0 1.0 0.0 0.0 0.0 0.0 0.0

43 chr11:-5945K 819 1.0 0.9 0.0 OK 1.0 1.0 1.0 0.0 0.0 0.0 0.0 0.0

44 chr11:-6024K 786 1.0 0.8 0.0 fshift 1.0 1.0 1.0 0.0 0.0 0.0 0.0 0.0

45 chr11:-6130K 774 0.9 0.8 0.0 fshift 1.0 1.0 1.0 0.0 0.0 0.0 0.0 0.0

46 chr11:-7751K 759 1.0 0.8 0.0 fshift 1.0 1.0 0.9 0.0 0.0 0.0 0.0 0.0

47 chr11:-48344K 690 1.0 0.8 0.0 fshift 1.0 1.0 1.0 0.0 0.0 0.0 0.0 0.0

48 chr11:-56036K 768 1.0 0.8 0.0 fshift 1.0 1.0 0.0 0.0 0.0 0.0 0.0 0.0

49 chr11:-56051K 612 1.0 0.7 0.0 OK 1.0 1.0 1.0 0.0 0.0 0.0 0.0 0.0

50 chr11:-56299K 810 1.0 0.9 0.0 OK 1.0 1.0 1.0 0.0 0.0 0.0 0.0 0.0

51 chr11:-58834K 777 1.0 0.8 0.0 fshift 1.0 0.9 1.0 0.0 0.0 0.0 0.0 0.0

52 chr11:-58916K 831 1.0 0.9 0.0 fshift 1.0 1.0 1.0 0.0 0.0 0.0 0.0 0.0

53 chr11:-123370K 999 0.9 1.0 0.0 fshift 1.0 0.5 1.0 0.0 0.0 0.0 0.0 0.0

54 chr11:-123470K 897 1.0 0.9 0.0 fshift 1.0 1.0 1.0 0.0 0.0 0.0 0.0 0.0

55 chr11:-123741K 528 1.0 0.6 0.0 OK 1.0 1.0 1.0 0.0 0.0 0.0 0.0 0.0

56 chr11:-123752K 405 1.0 0.4 0.0 OK 1.0 1.0 1.0 0.0 0.0 0.0 0.0 0.0

57 chr12:+47240K 795 1.0 0.8 0.0 nons 1.0 1.0 1.0 0.0 0.0 0.0 0.0 0.0

58 chr12:+53796K 765 1.0 0.8 0.0 OK 1.0 1.0 1.0 0.0 0.0 0.0 0.0 0.0

59 chr12:+54068K 882 1.0 0.9 0.0 fshift 1.0 1.0 0.0 0.0 0.0 0.0 0.0 0.0

60 chr12:+54255K 762 1.0 0.8 0.0 fshift 1.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0

61 chr12:-53874K 768 1.0 0.8 0.0 fshift 1.0 0.0 0.8 0.0 0.0 0.0 0.0 0.0

62 chr12:-132307K 1113 1.0 0.8 0.4 fshift 0.0 0.0 1.0 0.0 0.0 0.0 0.0 0.0

63 chr15:+38850K 528 1.0 1.0 1.0 OK 1.0 1.0 1.0 0.0 0.0 0.0 0.0 0.0

64 chr15:+100186K 876 1.0 0.9 0.0 fshift 1.0 1.0 1.0 0.0 0.0 0.0 0.0 0.0

65 chr16:+3206K 765 1.0 0.8 0.7 fshift 0.0 1.0 0.0 0.0 0.0 0.0 0.0 0.0

66 chr16:+87032K 900 0.9 0.6 0.8 OK 1.0 1.0 1.0 0.0 0.0 0.0 0.0 0.0

67 chr17:+2967K 858 0.9 0.8 0.0 fshift 0.8 0.0 0.0 0.0 0.0 0.0 0.0 0.0

68 chr17:-36712K 1026 0.9 1.0 0.0 nons 1.0 1.0 1.0 0.0 0.0 0.0 0.0 0.0

69 chr17:-36717K 1554 0.9 1.0 0.1 fshift 1.0 0.9 1.0 0.0 0.0 0.0 0.0 0.0

70 chr2:-88142K 750 1.0 1.0 0.0 fshift 0.8 0.7 1.0 0.0 0.0 0.0 0.0 0.0

71 chr2:-218751K 405 1.0 0.4 0.8 OK 1.0 1.0 1.0 0.0 0.0 0.0 0.0 0.0

72 chr20:+31191K 783 1.0 0.9 0.0 fshift 0.4 0.5 1.0 0.0 0.0 0.0 0.0 0.0

73 chr21:-30631K 624 0.9 0.9 0.0 fshift 0.8 0.1 1.0 0.0 0.0 0.0 0.0 0.0

74 chr3:+99440K 756 1.0 0.8 0.0 fshift 1.0 1.0 1.0 0.0 0.0 0.0 0.0 0.0

75 chr3:+162704K 654 1.0 0.9 0.0 OK 1.0 1.0 1.0 0.0 0.0 0.0 0.0 0.0

76 chr3:-49886K 702 1.0 0.6 0.0 OK 1.0 1.0 1.0 0.0 0.0 0.0 0.0 0.0

77 chr3:-49887K 417 1.0 0.2 0.1 OK 1.0 1.0 1.0 0.0 0.0 0.0 0.0 0.0

78 chr4:+37268K 3855 0.7 0.8 0.4 OK 1.0 1.0 1.0 0.0 0.0 0.0 0.0 0.0

79 chr4:+166338K 1407 1.0 1.0 0.0 fshift 1.0 0.8 0.0 0.0 0.0 0.0 0.0 0.0

80 chr7:+141040K 792 1.0 0.8 0.0 fshift 1.0 1.0 1.0 0.0 0.0 0.0 0.0 0.0

81 chr7:-142702K 591 1.0 0.6 0.0 OK 1.0 1.0 1.0 0.0 0.0 0.0 0.0 0.0

82 chr8:-146173K 492 1.0 1.0 1.0 fshift 0.0 0.0 1.0 0.0 0.0 0.0 0.0 0.0

83 chrX:+9745K 645 0.9 0.9 0.6 nons 0.0 0.0 1.0 0.0 0.0 0.0 0.0 0.0

84 chrX:+123193K 1182 0.9 0.9 0.5 fshift 0.5 0.6 0.9 0.0 0.0 0.0 0.0 0.0

85 chrX:+124181K 1074 0.8 0.8 0.0 fshift 0.9 0.9 0.3 0.0 0.0 0.0 0.0 0.0

86 chrX:+133104K 1107 0.9 1.0 0.7 fshift 1.0 0.0 1.0 0.0 0.0 0.0 0.0 0.0

87 chrX:+152026K 1737 0.9 0.9 0.0 fshift 0.8 0.7 0.9 0.0 0.0 0.0 0.0 0.0