ID: uc009rty.10
GENE: Ptpn23(14)
chr9:110292643-110293023-


(2)
AGO1.ip 		(10)
AGO2.ip 		(1)
AGO3.ip 		(4)
B-CELL 		(23)
BRAIN 		(3)
CELL-LINE 		(3)
DCR.mut 		(2)
DGCR8.mut 		(13)
EMBRYO 		(9)
ESC 		(5)
FIBROBLAST 		(2)
HEART 		(1)
KIDNEY 		(1)
LIVER 		(1)
LUNG 		(12)
OTHER 		(7)
OTHER.mut 		(3)
PIWI.ip 		(1)
PIWI.mut 		(3)
SKIN 		(3)
SPLEEN 		(21)
TESTES 		(2)
THYMUS 		(5)
TOTAL-RNA 		(2)
UTERUS

Sense strand
CTGCTTCGGGAGATGCTGGCCAAAATTGAAGATAAGAATGAGGTCCTAGAGTAAGTGGGGGACAAATGGTGGGGGGTGTGTATACACCAGGTTTCCCGCCTCCCTGACCAGAGTCTAGATCTAGACTGTAGGTGTTAATGTGCTTGTACCAGTGCTTGGGCATAGCTACTAGGCCATGTAGTATTAGAGAGGTAAAGGTGACAATTTTCTCTCTGCTAAGTCTTCAGTCTAGTTCCAGTGGAGGGGATGGACCAAGCAGGCTCTCTATGTGGAAGGAACTGGGCCAGCCCAGCATCCACCCGATCCTGTGTCATCCCTCTTCCTTCCCTAGTCAGTTCATGGACTCCATGCAGCTGGACCCTGAGACAGTGGACAACTTGG
..............................................................................................................................................................................................................................................................................((((((((..(((...((.(((.(((.....))).))).))...)))..))))))))......................................................
........................................................................................................................................................................................................................................................................265...............................................................331................................................
SizePerfect hitTotal NormPerfect NormSRR390298(GSM849856)
cell line: NIH-3T3cell type: fibroblastinfect. (fibroblast)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		mjLiverKO2()
Liver Data. (Zcchc11 liver)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR394084(GSM855970)
background strain: C57BL6/SV129cell type: KRa. (dicer cell line)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		mjTestesWT4()
Testes Data. (testes)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR039610(GSM527274)
small RNA-Seq. (brain)		mjTestesWT3()
Testes Data. (testes)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR206940(GSM723281)
other. (brain)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR553582(SRX182788)
source: Brain. (Brain)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR023851(GSM307160)
ZHBT-c412hsmallrna_rep1. (cell line)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR038743(GSM527278)
small RNA-Seq. (dicer brain)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		SRR402761(SRX117944)
source: ES E14 male cells. (ESC)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR037921(GSM510459)
e12p5_rep3. (embryo)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR038741(GSM527276)
small RNA-Seq. (brain)		SRR345205(SRX097266)
source: size fractionated RNA from mouse hipp. (brain)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR206942(GSM723283)
other. (brain)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)		GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR037929(GSM510467)
e7p5_rep3. (embryo)		GSM510456(GSM510456)
newborn_rep12. (total RNA)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		GSM317183(GSM317183)
Ago-1 IP small RNAs from mouse brain. (ago1 brain)		SRR390299(GSM849857)
cell line: NIH-3T3cell type: fibroblastip ant. (ago2 fibroblast)		SRR037907(GSM510443)
brain_rep4. (brain)		SRR037914(GSM510451)
newborn_rep7. (total RNA)		SRR685339(GSM1079783)
Small RNAs (15-50 nts in length) from immorta. (cell line)		SRR042456(GSM539848)
mouse hematopoetic progenitor cells [09-002]. (bone marrow)		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		SRR042457(GSM539849)
mouse mast cells [09-002]. (bone marrow)		SRR038740(GSM527275)
small RNA-Seq. (dicer brain)		SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR037924(GSM510462)
e9p5_rep2. (embryo)		SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR306540(GSM750583)
19-24nt. (ago2 brain)		SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR042483(GSM539875)
mouse muscle tissue [09-002]. (muscle)		SRR042446(GSM539838)
mouse mature B cells (spleen) replicate 1 [09-002]. (b cell)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR014231(GSM319955)
16.5 dpc total. (testes)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)		mjTestesKO5()
Testes Data. (Zcchc11 testes)		SRR346413(SRX098254)
Global profiling of miRNA and the hairpin pre. (Heart)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR059770(GSM562832)
Treg_Dicer. (spleen)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		GSM509280(GSM509280)
small RNA cloning by length. (testes)		GSM510454(GSM510454)
newborn_rep10. (total RNA)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		GSM510450(GSM510450)
newborn_rep6. (total RNA)		mjTestesKO6()
Testes Data. (Zcchc11 testes)		RuiDcrWT(Rui)
DGCR8-dependent microRNA biogenesis is essent. (skin)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		GSM510452(GSM510452)
newborn_rep8. (total RNA)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR553584(SRX182790)
source: Heart. (Heart)		SRR014236(GSM319960)
10 dpp total. (testes)		SRR037923(GSM510461)
e9p5_rep1. (embryo)		SRR059767(GSM562829)
DN3_Dicer. (thymus)		SRR032477(GSM485235)
sRNA_activation_deep_sequencing. (uterus)		SRR059766(GSM562828)
DN3_Drosha. (thymus)		SRR306536(GSM750579)
19-24nt. (ago2 brain)
.............................................................................................................................................................................................................................................................................TGGAAGGAACTGGGCCAGCCCA..........................................................................................22190.0090.0083.00--2.00----------1.002.00--------1.00---------------------------------------------------------------1.00---------------------
......................................................................................................................................................................................................................................................................................................................TCATCCCTCTTCCTTCCCTAGT.................................................22123.0023.00-3.00-------1.00-1.00----1.00----3.00----------3.00--2.00--------------2.00-------------1.00------------------------1.001.00-1.00--1.00----1.001.00--------
...........................................................................................................................................................................................................................................................................TGTGGAAGGAACTGGGCCAGC.............................................................................................21120.0020.00-4.0011.00---------3.00-----------1.00---1.00---------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................TGTGGAAGGAACTGGGCCAGT.............................................................................................2112.000.00-----1.00----7.00-------3.00---------1.00---------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................TGTGGAAGGAACTGGGCCAGCCC...........................................................................................2319.009.00-----3.00-1.00--------2.00--1.00-----------------1.00----1.00-------------------------------------------------------------------
................................TAAGAATGAGGTCCTAGA...........................................................................................................................................................................................................................................................................................................................................1818.008.00------7.00------------1.00------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................TGTCATCCCTCTTCCTTCCCTAG..................................................2317.007.00-1.00-------1.00------1.001.00-------1.00-------1.001.00---------------------------------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................GTCATCCCTCTTCCTTCCCTAG..................................................2217.007.00-1.00---------------1.00-------2.00--------1.00--------1.00------------------------1.00-----------------------------------------
....................................................................................................................................................................................................................................................................................................................TGTCATCCCTCTTCCTTCCCTA...................................................2215.005.00-----------1.00--------------------------------1.00---2.00----------------------------------1.00--------------------------
..........................................................................................................................................................................................................................................................................ATGTGGAAGGAACTGGGCCAGCC............................................................................................2315.005.00-----1.00-------4.00------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................TGTGGAAGGAACTGGGCCAGCC............................................................................................2215.005.00-------------1.00--1.00------------2.00-------------------------------------1.00------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................GTTCATGGACTCCATGCAGCTGGACCC....................2715.005.00---5.00----------------------------------------------------------------------------------------------------------
.................................AAGAATGAGGTCCTAGATC.........................................................................................................................................................................................................................................................................................................................................1915.004.00----3.00--1.00-------1.00----------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................TGGAAGGAACTGGGCCAGCCCAT.........................................................................................2314.0090.00---------1.00-------------------1.001.00--------------------1.00----------------------------------------------------------
.................................AAGAATGAGGTCCTAGA...........................................................................................................................................................................................................................................................................................................................................1714.004.00----------------------------1.00--2.00---------------1.00--------------------------------------------------------------
..........................................................................................................................................................................................................................................................................ATGTGGAAGGAACTGGGCCAGT.............................................................................................2213.003.00------------------1.00------------------1.00---------------1.00--------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................TGTCATCCCTCTTCCTTCCCT....................................................2113.003.00-----------1.00-----------------------1.00--------1.00-----------------------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................GTCATCCCTCTTCCTTCCCTA...................................................2113.003.00--------------1.00------------------1.00--------------------------------------------1.00-------------------------------
..........................................................................................................................................................................................................................................................................ATGTGGAAGGAACTGGGCCAG..............................................................................................2113.003.00-1.00----------------------------1.00--------------------------------------------1.00----------------------------------
.....................................................................................................................................................................................................................................................................................................................GTCATCCCTCTTCCTTCCCTAGT.................................................2313.003.00-----------------------------------------------------------1.00----------------1.00---------1.00-----------------------
...........................................................................................................................................................................................................................................................................TGTGGAAGGAACTGGGCCAGCCCT..........................................................................................2413.009.00-----------1.00--------------1.00----------------1.00------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................TGTGGAAGGAACTGGGCCAGCCAAT.........................................................................................2513.005.00------------3.00-------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................GTCATCCCTCTTCCTTCCCT....................................................2013.003.00-----------2.00----------------------1.00---------------------------------------------------------------------------
................................................................................................................................................................................................................................................................................................................................................TCATGGACTCCATGCAGC...........................1812.002.00-------------------------------------------------------------------------1.00-------------------------------1.00----
.....................AAAATTGAAGATAAGAATGAGGTCCT..............................................................................................................................................................................................................................................................................................................................................2612.002.00------------------------------------------------------1.00------------------------------------1.00------------------
.....................................................................................................................................................................................................................................................................................................................GTCATCCCTCTTCCTTCCCTATT.................................................2312.003.00-----------------------------------------1.00-----------------------------------1.00--------------------------------
...........................................................................................................................................................................................................................................................................TGTGGAAGGAACTGGGCCAGCCAC..........................................................................................2412.005.00---------------------------------------------------1.00------1.00---------------------------------------------------
..........................................................................................................................................................................................................................................................................ATGTGGAAGGAACTGGGCCAGCCC...........................................................................................2412.002.00-------------1.00-----1.00------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................GCAGCTGGACCCTGAGACAG............2012.002.00-------2.00------------------------------------------------------------------------------------------------------
.........................TTGAAGATAAGAATGAGGTCC...............................................................................................................................................................................................................................................................................................................................................2112.002.00--------2.00-----------------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................TGTCATCCCTCTTCCTTCCCTAGA.................................................2412.007.00--------------------------------------------------------1.00----------------------------------------1.00------------
...........................................................................................................................................................................................................................................................................TGTGGAAGGAACTGGGCCAGCCA...........................................................................................2312.005.00------------------------------------1.00----1.00--------------------------------------------------------------------
......................................................................................................................................................................................................................................................................................................................TCATCCCTCTTCCTTCCCTAGA.................................................2212.002.00-1.00-------------------------------------------------------------1.00----------------------------------------------
..........................................................................................................................................................................................................................................................................ATGTGGAAGGAACTGGGCCAGC.............................................................................................2212.002.00----------------------1.00----------------------------------------------1.00----------------------------------------
.............TGCTGGCCAAAATTGAAGATAAGAATG.....................................................................................................................................................................................................................................................................................................................................................2712.002.00--------------------1.00---------------------------------1.00-------------------------------------------------------
.............................................................................................................................................................................................................................................................................TGGAAGGAACTGGGCCAGCCCATT........................................................................................2412.0090.00------------------------1.00--------1.00----------------------------------------------------------------------------
......................AAATTGAAGATAAGAATGAGGTCCTAG............................................................................................................................................................................................................................................................................................................................................2712.002.00--------------------2.00-----------------------------------------------------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................GCTGGACCCTGAGACAGTGGAC.......2212.002.00----------------------------------------------------------------------1.00-------------1.00-------------------------
......................................................................................................................................................................................................................................................................................................................TCATCCCTCTTCCTTCCCTAG..................................................2112.002.00-1.00---------------1.00--------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................TGTGGAAGGAACTGGGCCAGCCCA..........................................................................................2412.002.00-----1.00------------1.00-------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................TGGAAGGAACTGGGCCAGCCCAAT........................................................................................2411.0090.00----1.00---------------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................................ATGTGGAAGGAACTGGGCCAGCAA...........................................................................................2411.002.00--------1.00-----------------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................................................ATGGACCAAGCAGGCTCTCTATGTGGAAGGAACTGGGCCAGCCCAGCATCCACCCGATCCTGTGTCATCCCTCTTCCTTCCCTAG..................................................8511.001.00------------------------------------------------------------1.00-------------------------------------------------
.........................................................................................................................................................................................................................................................................TATGTGGAAGGAACTGGGCCCGA.............................................................................................231.000.00-----1.00--------------------------------------------------------------------------------------------------------
....TTCGGGAGATGCTGGCCAAAATTGATA..............................................................................................................................................................................................................................................................................................................................................................271.000.00--------1.00-----------------------------------------------------------------------------------------------------
............................................................................................................................................................................................................................................................................................................................................................TGCAGCTGGACCCTGAGACAGTGGACAACT...3011.001.00---------------------------------------1.00----------------------------------------------------------------------
.................................AAGAATGAGGTCCTAGATCAG.......................................................................................................................................................................................................................................................................................................................................2111.004.00--------------------------------------------------------------------------------------------------1.00-----------
................TGGCCAAAATTGAAGATAAGAATGAGG..................................................................................................................................................................................................................................................................................................................................................2711.001.00---------------------------------------------------------1.00----------------------------------------------------
.............................................................................................................................................................................................................................................................................TGGAAGGAACTGGGCCAGCCCAA.........................................................................................2311.0090.00-------1.00------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................TGTGGAAGGAACTGGGCCAGCCCAA.........................................................................................2511.002.00-------------------1.00------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................TGTGGAAGGAACTGGGCGTAG.............................................................................................211.000.00--1.00-----------------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................................................CATGCAGCTGGACCCTGAGACAGTGGAC.......2811.001.00--------------------------1.00-----------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................TGGAAGGAACTGGGCCAGCC............................................................................................2011.001.00-1.00------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................TGTCATCCCTCTTCCTTCCCTAGTT................................................251.000.00---------------------------------------------------------------------------------------1.00----------------------
.........................................................................................................................................................................................................................................................................TATGTGGAAGGAACTGGGCCAGCC............................................................................................2411.001.00---------------------------------------------1.00----------------------------------------------------------------
.........................................................................................................................................................................................................................................................................TATGTGGAAGGAACTGGGCCAGCCCAT.........................................................................................2711.001.00--------------------------1.00-----------------------------------------------------------------------------------
........................................AGGTCCTAGAGTAAGGC....................................................................................................................................................................................................................................................................................................................................171.000.00-------1.00------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................GTCATCCCTCTTCCTTCCCTAGA.................................................2311.007.00---------------------------1.00----------------------------------------------------------------------------------
.........................TTGAAGATAAGAATGAGGTCCTAGA...........................................................................................................................................................................................................................................................................................................................................2511.001.00----1.00---------------------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................................................................................TATGTGGAAGGAACTGGGCCAGCCCAAA........................................................................................2811.001.00----------------------------------------------------------------------------------1.00---------------------------
..........................................................................................................................................................................................................................................................................ATGTGGAAGGAACTGGGCCAGTA............................................................................................2311.003.00-1.00------------------------------------------------------------------------------------------------------------
..........................................................................................................................................................................AGGCCATGTAGTATTAGAGAGGT............................................................................................................................................................................................2311.001.00-------1.00------------------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................................................................................................................................................ACTCCATGCAGCTGGACCC....................1911.001.00----1.00---------------------------------------------------------------------------------------------------------
..GCTTCGGGAGATGCTGGCCAAAA....................................................................................................................................................................................................................................................................................................................................................................2311.001.00------------------------------------------------------------------------------------------------------1.00-------
..GCTTCGGGAGATGCTGGCCAA......................................................................................................................................................................................................................................................................................................................................................................2111.001.00--------1.00-----------------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................................................................................................................TCATCCCTCTTCCTTCCCTAGTAA...............................................2411.0023.00---------1.00----------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................GTCATCCCTCTTCCTTCCCTAT..................................................2211.003.00--------1.00-----------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................TGTGGAAGGAACTGGGCCAGAAGT..........................................................................................241.000.00--------------------------------------------------------------------------1.00-----------------------------------
.............................................................................................................................................................................................................................................................................TGGAAGGAACTGGGCCAGCCCAAA........................................................................................2411.0090.00----------------------------------------------------1.00---------------------------------------------------------
.........................................................................................................................................................................................................................................................................TATGTGGAAGGAACTGGGCCAGCCCA..........................................................................................2611.001.00----1.00---------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................TGTGGAAGGAACTGGGCCAAT.............................................................................................211.000.00------------------------------------1.00-------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................................................CATGCAGCTGGACCCTGAGA...............2011.001.00----------------------------------------1.00---------------------------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................ATGGACTCCATGCAGCTGGACCC....................2311.001.00---------------------------1.00----------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................TGTGGAAGGAACTGGGCCAGCCAT..........................................................................................2411.005.00-------------------------------1.00------------------------------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................TGTCATCCCTCTTCCTTCCCTAT..................................................2311.005.00-----------------1.00--------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................................ATGTGGAAGGAACTGGGCCAGCTT...........................................................................................2411.002.00----------------------------------------1.00---------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................TGTGGAAGGAACTGGGCCAGCCCAT.........................................................................................2511.002.00---------1.00----------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................TGGAAGGAACTGGGCCAGCCCAAATT......................................................................................2611.0090.00------------------------------------------------------------------------------------------------------------1.00-
...........................................................................................................................................................................................................................................................................TGTGGAAGGAACTGGGCCAGCCAAA.........................................................................................2511.005.00---------------------------------------1.00----------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................TGTGGAAGGAACTGGGCCAGCA............................................................................................2211.0020.00----1.00---------------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................................ATGTGGAAGGAACTGGGCCAGCCCAAGT.......................................................................................281.000.00-----1.00--------------------------------------------------------------------------------------------------------
.............................AGATAAGAATGAGGTCCTAGATT.........................................................................................................................................................................................................................................................................................................................................231.000.00--------1.00-----------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................TGGAAGGAACTGGGCCAGA.............................................................................................191.000.00----------------------1.00---------------------------------------------------------------------------------------
....TTCGGGAGATGCTGGATCA......................................................................................................................................................................................................................................................................................................................................................................191.000.00--------------1.00-----------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................TGGAAGGAACTGGGCCAGCCCAAGC.......................................................................................2511.0090.00------------------------------------------------------------------------1.00-------------------------------------
...........................................................................................................................................................................................................................................................................TGTGGAAGGAACTGGGCCAGTTT...........................................................................................231.000.00-----------------------------------------------------------------------1.00--------------------------------------
...........................................................................................................................................................................................................................................................................TGTGGAAGGAACTGGGCCACCCC...........................................................................................231.000.00-----1.00--------------------------------------------------------------------------------------------------------
.....TCGGGAGATGCTGGCCAAAATT..................................................................................................................................................................................................................................................................................................................................................................2211.001.00----------------------------------------------1.00---------------------------------------------------------------
.............................................................................................................................................................................................................................................................................TGGAAGGAACTGGGCCAGCCCAAGT.......................................................................................2511.0090.00-----------------------------------------------------1.00--------------------------------------------------------
......................................................................................................................................................................................................................................................................................................................TCATCCCTCTTCCTTCCCTCG..................................................211.000.00-----------------1.00--------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................TGGACTCCATGCAGCTGGACCCT...................2311.001.00------------------------------------------------------------------1.00-------------------------------------------
...........................................................................................................................................................................................................................................................................................................CCGATCCTGTGTCATCCCTCTTCCT.........................................................2511.001.00-----------------------------------------------1.00--------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................TGGACTCCATGCAGCTGGACCCTGAGAC..............2811.001.00-------------------------------------------------1.00------------------------------------------------------------
...........................................................................................................................................................................................................................................................................TGTGGAAGGAACTGGGCCAGCCCTTT........................................................................................2611.009.00---------------1.00----------------------------------------------------------------------------------------------
...........................GAAGATAAGAATGAGGTCCTAGA...........................................................................................................................................................................................................................................................................................................................................2311.001.00----------------------------------------------1.00---------------------------------------------------------------
.........................................................................................................................................................................................................................................................................TATGTGGAAGGAACTGGGCCAGCAT...........................................................................................2511.001.00-------------------------------------------------------------------------------------1.00------------------------
...........................................................................................................................................................................................................................................................................TGTGGAAGGAACTGGGCCAGAAAA..........................................................................................241.000.00-----------------------------------------------------------------------------------------------------------1.00--
..............................................................................................................................................................................................................................................................................GGAAGGAACTGGGCCAGCCCAAT........................................................................................231.000.00--------------1.00-----------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................TGTGGAAGGAACTGGGCCAGCCAA..........................................................................................2411.005.00--------------------------------------1.00-----------------------------------------------------------------------
..........................TGAAGATAAGAATGAGGTCCTAGATC.........................................................................................................................................................................................................................................................................................................................................261.000.00---------------------------------------------------------------------------------------------------1.00----------
...........................................................................................................................................................................................................................................................................TGTGGAAGGAACTGGGCCAGCCTA..........................................................................................2411.005.00--------------------------------------------------------------1.00-----------------------------------------------
............................................................................................................................................................................................................................................................................................................................................................TGCAGCTGGACCCTGAGACAGTGGAC.......2611.001.00---------------------------------------------------------------------------------1.00----------------------------
......................................................................................................................................................................................................................................................................................................................TCATCCCTCTTCCTTCCCTATT.................................................221.000.00----------------------------------------------------------------------------------------------------------1.00---
...........................................................................................................................................................................................................................................................................TGTGGAAGGAACTGGGCCAGA.............................................................................................211.000.00-------------------------------------------------------1.00------------------------------------------------------
...........................................................................................................................................................................................................................................................................TGTGGAAGGAACTGGGCCAGCAAT..........................................................................................2411.0020.00---------------1.00----------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................TGGAAGGAACTGGGCCAGCA............................................................................................201.000.00------------------------------1.00-------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................................ATGTGGAAGGAACTGGGCCAGCCAA..........................................................................................2511.005.00---------1.00----------------------------------------------------------------------------------------------------
.............TGCTGGCCAAAATTGAAGA.............................................................................................................................................................................................................................................................................................................................................................1911.001.00---------1.00----------------------------------------------------------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................ATGGACTCCATGCAGCTGGACCCT...................2411.001.00-------1.00------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................TGGAAGGAACTGGGCCAGCCCACT........................................................................................2411.0090.00----1.00---------------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................................ATGTGGAAGGAACTGGGCCAGAA............................................................................................2311.003.00--------------------------------------1.00-----------------------------------------------------------------------
.........................................................................................................................................................................................................................................................................TATGTGGAAGGAACTGGGCCAGC.............................................................................................2311.001.00----------------------1.00---------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................TGTGGAAGGAACTGGGCCAGCCCAAT........................................................................................2611.002.00-----------------------------------------------------------------1.00--------------------------------------------
.............................................................................................................................................................................................................................................................................TGGAAGGAACTGGGCCAGCCA...........................................................................................2111.001.001.00-------------------------------------------------------------------------------------------------------------
..............................GATAAGAATGAGGTCCTAGA...........................................................................................................................................................................................................................................................................................................................................2011.001.00--------------1.00-----------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................TGTGGAAGGAACTGGGCCAGAT............................................................................................221.000.00-------------------------------------------------------------------------------1.00------------------------------
.............................................................................................................................................................................................................................................................................................................................................................GCAGCTGGACCCTGAGACAGT...........2111.001.00----------------------------------------------------------------------------------------------1.00---------------
.........................................................................................................................................................................................................................................................................................................................................................................TGAGACAGTGGACAACTT..1811.001.00--------1.00-----------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................TGTGGAAGGAACTGGGCCAGAA............................................................................................221.000.00---------------------------------------------------------------------------------------------1.00----------------
.........................TTGAAGATAAGAATGAGG..................................................................................................................................................................................................................................................................................................................................................1811.001.00-------------------------------------------------1.00------------------------------------------------------------
.....................................................................................................................................................CAGTGCTTGGGCATAGCATGT...................................................................................................................................................................................................................211.000.00------------------------------------------1.00-------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................TGGAAGGAACTGGGCCAGAAT...........................................................................................211.000.00--------------------------------------------------------------------------------1.00-----------------------------
...................................................................................................................................................................................................................................................................................................................................................TGGACTCCATGCAGCTGGACCC....................2211.001.00---------------------------------------------1.00----------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................TGGACTCCATGCAGCTGGACCCTG..................2411.001.00-------------------------------------------------------------------------------------------------------1.00------
..........................................................................................................................................................................................................................................................................ATGTGGAAGGAACTGGGCCAGA.............................................................................................2211.003.00------------------------------------------------------------------------------------------------1.00-------------
.........................TTGAAGATAAGAATGAGGTCCTAGATC.........................................................................................................................................................................................................................................................................................................................................2711.001.00--------------------------------------------------------------------------------------------------------1.00-----
......................................................................................................................................................................................................................................................................................................................TCATCCCTCTTCCTTCCCTAAG.................................................221.000.00-------------------------------------------------------------1.00------------------------------------------------
...........................................................................................................................................................................................................................................................................TGTGGAAGGAACTGGGCCAGAAA...........................................................................................231.000.00---------------------------1.00----------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................AGACAGTGGACAACTT..1630.670.67------0.67-------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................TGTCATCCCTCTTCCTTCCCC....................................................2120.500.50-------------------------------------------------------0.50------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................TGTCATCCCTCTTCCTTCCC.....................................................2020.500.50-------------------------------------------------------------------------------------------------------------0.50
....................................................................................................................................................................................................................................................................................................................TGTCATCCCTCTTCCTTCCCGT...................................................2220.500.50---------------------0.50----------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................TGTCATCCCTCTTCCTTCCCAA...................................................2220.500.50-------------------0.50------------------------------------------------------------------------------------------
..................................AGAATGAGGTCCTAGA...........................................................................................................................................................................................................................................................................................................................................1630.330.33--------------------------------------------------------0.33-----------------------------------------------------
...................................GAATGAGGTCCTAGATC.........................................................................................................................................................................................................................................................................................................................................1740.250.25-------0.25------------------------------------------------------------------------------------------------------
...................................GAATGAGGTCCTAGA...........................................................................................................................................................................................................................................................................................................................................1540.250.25----------------------0.25---------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................GCAGCTGGACCCTGAG................1660.170.17---------------------------------------------------------0.17----------------------------------------------------

Antisense strand
CTGCTTCGGGAGATGCTGGCCAAAATTGAAGATAAGAATGAGGTCCTAGAGTAAGTGGGGGACAAATGGTGGGGGGTGTGTATACACCAGGTTTCCCGCCTCCCTGACCAGAGTCTAGATCTAGACTGTAGGTGTTAATGTGCTTGTACCAGTGCTTGGGCATAGCTACTAGGCCATGTAGTATTAGAGAGGTAAAGGTGACAATTTTCTCTCTGCTAAGTCTTCAGTCTAGTTCCAGTGGAGGGGATGGACCAAGCAGGCTCTCTATGTGGAAGGAACTGGGCCAGCCCAGCATCCACCCGATCCTGTGTCATCCCTCTTCCTTCCCTAGTCAGTTCATGGACTCCATGCAGCTGGACCCTGAGACAGTGGACAACTTGG
..............................................................................................................................................................................................................................................................................((((((((..(((...((.(((.(((.....))).))).))...)))..))))))))......................................................
........................................................................................................................................................................................................................................................................265...............................................................331................................................
SizePerfect hitTotal NormPerfect NormSRR390298(GSM849856)
cell line: NIH-3T3cell type: fibroblastinfect. (fibroblast)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		mjLiverKO2()
Liver Data. (Zcchc11 liver)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR394084(GSM855970)
background strain: C57BL6/SV129cell type: KRa. (dicer cell line)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		mjTestesWT4()
Testes Data. (testes)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR039610(GSM527274)
small RNA-Seq. (brain)		mjTestesWT3()
Testes Data. (testes)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR206940(GSM723281)
other. (brain)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR553582(SRX182788)
source: Brain. (Brain)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR023851(GSM307160)
ZHBT-c412hsmallrna_rep1. (cell line)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR038743(GSM527278)
small RNA-Seq. (dicer brain)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		SRR402761(SRX117944)
source: ES E14 male cells. (ESC)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR037921(GSM510459)
e12p5_rep3. (embryo)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR038741(GSM527276)
small RNA-Seq. (brain)		SRR345205(SRX097266)
source: size fractionated RNA from mouse hipp. (brain)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR206942(GSM723283)
other. (brain)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)		GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR037929(GSM510467)
e7p5_rep3. (embryo)		GSM510456(GSM510456)
newborn_rep12. (total RNA)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		GSM317183(GSM317183)
Ago-1 IP small RNAs from mouse brain. (ago1 brain)		SRR390299(GSM849857)
cell line: NIH-3T3cell type: fibroblastip ant. (ago2 fibroblast)		SRR037907(GSM510443)
brain_rep4. (brain)		SRR037914(GSM510451)
newborn_rep7. (total RNA)		SRR685339(GSM1079783)
Small RNAs (15-50 nts in length) from immorta. (cell line)		SRR042456(GSM539848)
mouse hematopoetic progenitor cells [09-002]. (bone marrow)		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		SRR042457(GSM539849)
mouse mast cells [09-002]. (bone marrow)		SRR038740(GSM527275)
small RNA-Seq. (dicer brain)		SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR037924(GSM510462)
e9p5_rep2. (embryo)		SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR306540(GSM750583)
19-24nt. (ago2 brain)		SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR042483(GSM539875)
mouse muscle tissue [09-002]. (muscle)		SRR042446(GSM539838)
mouse mature B cells (spleen) replicate 1 [09-002]. (b cell)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR014231(GSM319955)
16.5 dpc total. (testes)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)		mjTestesKO5()
Testes Data. (Zcchc11 testes)		SRR346413(SRX098254)
Global profiling of miRNA and the hairpin pre. (Heart)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR059770(GSM562832)
Treg_Dicer. (spleen)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		GSM509280(GSM509280)
small RNA cloning by length. (testes)		GSM510454(GSM510454)
newborn_rep10. (total RNA)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		GSM510450(GSM510450)
newborn_rep6. (total RNA)		mjTestesKO6()
Testes Data. (Zcchc11 testes)		RuiDcrWT(Rui)
DGCR8-dependent microRNA biogenesis is essent. (skin)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		GSM510452(GSM510452)
newborn_rep8. (total RNA)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR553584(SRX182790)
source: Heart. (Heart)		SRR014236(GSM319960)
10 dpp total. (testes)		SRR037923(GSM510461)
e9p5_rep1. (embryo)		SRR059767(GSM562829)
DN3_Dicer. (thymus)		SRR032477(GSM485235)
sRNA_activation_deep_sequencing. (uterus)		SRR059766(GSM562828)
DN3_Drosha. (thymus)		SRR306536(GSM750579)
19-24nt. (ago2 brain)
........................................................................................................................................................................................................................TAAGTCTTCAGTCTAAAAA.................................................................................................................................................. 192.000.00---2.00----------------------------------------------------------------------------------------------------------
................................................................................................................................................................................................................................................................................................CCAGCATCCACCCGAAG............................................................................ 171.000.00-----------------------1.00--------------------------------------------------------------------------------------
..........................................................................................GTTTCCCGCCTCCCTGAAC................................................................................................................................................................................................................................................................................ 191.000.00-----------------------1.00--------------------------------------------------------------------------------------
............................................................................................TTCCCGCCTCCCTGAGAGA.............................................................................................................................................................................................................................................................................. 191.000.00-----------------------1.00--------------------------------------------------------------------------------------
......................................................................................................................................................................................................................................................................................................TCCACCCGATCCTGTGC...................................................................... 171.000.00----------------------------------------------------1.00---------------------------------------------------------
......................AAATTGAAGATAAGAATGAGGTCCTA............................................................................................................................................................................................................................................................................................................................................. 2611.001.00--------------------1.00-----------------------------------------------------------------------------------------
.........................................................................................................................................................................................................................................................................................GGCCAGCCCAGCATCCA................................................................................... 1750.600.60---0.60----------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................GTGTCATCCCTCTTC........................................................... 1590.110.11-----------------------0.11--------------------------------------------------------------------------------------
...........................................................................................................CCAGAGTCTAGATCT................................................................................................................................................................................................................................................................... 15100.100.10-0.10------------------------------------------------------------------------------------------------------------