ID: uc009rps.16
GENE: Usp19(16)
chr9:108400027-108400276+


(1)
AGO.mut 		(11)
AGO2.ip 		(1)
AGO3.ip 		(18)
BRAIN 		(4)
CELL-LINE 		(2)
DCR.mut 		(1)
DGCR8.mut 		(8)
EMBRYO 		(6)
ESC 		(4)
FIBROBLAST 		(4)
LIVER 		(1)
LYMPH 		(12)
OTHER 		(2)
OTHER.mut 		(1)
OVARY 		(1)
PIWI.ip 		(2)
SKIN 		(1)
SPLEEN 		(7)
TESTES 		(1)
THYMUS

Sense strand
GTTGATGCCTGCTCAGGCTTTGTCTCAGGTTCTCTAAAGTGCTTTCTGCCCCAGGGCAAGCATATTCCTCTTTTAGTCCACATATCATGTCCTGCCCCATCTCAGTAGACTCCAGTGCAGGACTAAGCCCTCCGTGGTGCCGTGAAGCAGAGCTGGAGAAAGGTCGCACCACATGCCATATGTGTGTCCTTTCTCCCCAGGTAATTAAGAACCGTTTCCACCGTGTTTTCTTGCCCTCCCACTCACTGGA
..........................................................................................................................................................(((((((((.(((((............))))).)))))))))......................................................
..................................................................................................................................................147..................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR685340(GSM1079784)
Small RNAs (15-50 nts in length) from immorta. (dicer cell line)		SRR394084(GSM855970)
background strain: C57BL6/SV129cell type: KRa. (dicer cell line)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)		SRR073955(GSM629281)
total RNA. (blood)		SRR306530(GSM750573)
19-24nt. (ago2 brain)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR525242(SRA056111/SRX170318)
Mus musculus domesticus miRNA sequencing. (ago2 Blood)		SRR065056(SRR065056)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		mjTestesWT2()
Testes Data. (testes)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR023849(GSM307158)
NPCsmallrna_rep1. (cell line)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		SRR037898(GSM510434)
ovary_rep3. (ovary)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		SRR206942(GSM723283)
other. (brain)		SRR116846(GSM678422)
Small RNA deep sequencing from mouse epididym. (epididymis)		SRR059767(GSM562829)
DN3_Dicer. (thymus)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		GSM314559(GSM314559)
ESC dgcr8 (454). (ESC)		GSM475279(GSM475279)
Miwi-IP. (miwi testes)		SRR306539(GSM750582)
19-24nt. (ago2 brain)		SRR065049(SRR065049)
Tissue-specific Regulation of Mouse MicroRNA . (liver)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)		SRR306537(GSM750580)
19-24nt. (ago2 brain)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)		GSM510444(GSM510444)
brain_rep5. (brain)		Ago2IP504(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR206941(GSM723282)
other. (brain)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR060845(GSM561991)
total RNA. (brain)		SRR685339(GSM1079783)
Small RNAs (15-50 nts in length) from immorta. (cell line)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR390299(GSM849857)
cell line: NIH-3T3cell type: fibroblastip ant. (ago2 fibroblast)		SRR525238(SRA056111/SRX170314)
Second IgG control. (Blood)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR073954(GSM629280)
total RNA. (blood)		SRR042457(GSM539849)
mouse mast cells [09-002]. (bone marrow)
....................................................................................................................................................................................TGTGTGTCCTTTCTCCCCAGT.................................................21114.001.00--2.002.00------2.00-3.00----------1.00-----2.00--------------------1.00-----1.00------------
.......................................................................................................................................................GCTGGAGAAAGGTCGCACCACAT............................................................................2319.009.00-6.00---------1.00---------1.00---------------------1.00-------------------------
.......................................................................................................................................................GCTGGAGAAAGGTCGCACCACATGCC.........................................................................2617.007.007.00--------------------------------------------------------------------
.........................................................................................................................................................TGGAGAAAGGTCGCACCACAT............................................................................2117.007.00----------------2.00--1.00-------1.00-------------1.001.00---------1.00----------------
.........................................................................................................................................................TGGAGAAAGGTCGCACCACATGC..........................................................................2315.005.00-----------------------------------1.001.00-------1.00------------1.00-1.00---------
..............................................................................................................................................................................................................AAGAACCGTTTCCACCGT..........................1814.004.00--1.00-1.002.00---------------------------------------------------------------
.......................................................................................................................................................GCTGGAGAAAGGTCGCACCACA.............................................................................2214.004.00-----------------2.00-------------------------------1.00------------1.00------
..............................................................................................................................................................AAAGGTCGCACCACATGCCATATGTGTGTCC.............................................................3113.003.00---------3.00-----------------------------------------------------------
.........................................................................................................................................................TGGAGAAAGGTCGCACCAC..............................................................................1913.003.00----------1.00--1.00---------------------------------1.00---------------------
.......................................................................................................................................................GCTGGAGAAAGGTCGCACCAC..............................................................................2113.003.00----------------------1.00----------1.00--------------------------------1.00--
..............................................................................................................................................................................................................AAGAACCGTTTCCACCGTGT........................2012.002.00--1.00-1.00----------------------------------------------------------------
.........................................................................................................................................................TGGAGAAAGGTCGCACCACATGT..........................................................................2312.002.00-------1.00-----------1.00-------------------------------------------------
....................................................................................................................................................................................TGTGTGTCCTTTCTCCCCAGTAT...............................................2312.001.00-----------1.00---------------------------1.00-----------------------------
....................................................................................................................................................................................TGTGTGTCCTTTCTCCCCAGA.................................................2112.001.00---------------1.00-------1.00---------------------------------------------
.........................................................................................................................................................TGGAGAAAGGTCGCACCACA.............................................................................2012.002.00-------------------------------------1.00--------1.00----------------------
.........................................................................................................................................................TGGAGAAAGGTCGCACCACATGCC.........................................................................2412.002.00---1.00------------------------------------1.00----------------------------
.......................................................................................................................................................GCTGGAGAAAGGTCGCACCACATGC..........................................................................2512.002.00---------------------------1.001.00----------------------------------------
.........................................................................................................................................................TGGAGAAAGGTCGCACCACATG...........................................................................2212.002.00------1.00----------------------------------------------1.00---------------
........................................................................................................................................................CTGGAGAAAGGTCGCACCACATGCC.........................................................................2511.001.00------1.00--------------------------------------------------------------
........................................................................................................................................................CTGGAGAAAGGTCGCACCACA.............................................................................2111.001.00--------1.00------------------------------------------------------------
.................................................................................................................................................AGCAGAGCTGGAGAACGG.......................................................................................181.000.00------------------------1.00--------------------------------------------
........................................................................................................................................................CTGGAGAAAGGTCGCACCACATG...........................................................................2311.001.00-------1.00-------------------------------------------------------------
.......................................................................................................................................................GCTGGAGAAAGGTCGCACCACATG...........................................................................2411.001.00----------------------------1.00----------------------------------------
..................................................................................................................................................................................TATGTGTGTCCTTTCTCCCCA...................................................2111.001.00-------------1.00-------------------------------------------------------
.....................................................................................................................................................................................GTGTGTCCTTTCTCCCCAGAAA...............................................221.000.00---------------1.00-----------------------------------------------------
..................................................................................................................................................................................TATGTGTGTCCTTTCTCCCCAGT.................................................231.000.00------1.00--------------------------------------------------------------
...................................................................................................................................................CAGAGCTGGAGAAAGGTCG....................................................................................1911.001.00------------------------------------------------------------1.00--------
........................................................................................................................................................CTGGAGAAAGGTCGCACCACATGAT.........................................................................2511.001.00--------------------------------------------------------------------1.00
...................................................................................................................................................................................ATGTGTGTCCTTTCTCCCCAG..................................................2111.001.00-----------1.00---------------------------------------------------------
..................................................................................................................GTGCAGGACTAAGCCCTCCGTGGTGCCGTGAAGCAGAGCTGGAGAAAGGTCGCACCACATGCCATATGTGTGTCCTTTCTCCCCAG..................................................8611.001.00---------------------------------------------------------------1.00-----
....................................................................................................................................................................................TGTGTGTCCTTTCTCCCCAGTAG...............................................2311.001.00--------1.00------------------------------------------------------------
.....................................................................................................................................................GAGCTGGAGAAAGGTGGTA..................................................................................191.000.00---------------------------------------------------1.00-----------------
...................................................................................................................................................................................ATGTGTGTCCTTTCTCCCCAGTT................................................2311.001.00--------1.00------------------------------------------------------------
......................................................................................................................................................AGCTGGAGAAAGGTCGCACCACA.............................................................................2311.001.00---------------------------------------------1.00-----------------------
................................................................................................................................................AAGCAGAGCTGGAGAAAGGTCGCACC................................................................................2611.001.00----------------------------------------------------------------1.00----
.........................................................................................................................................................TGGAGAAAGGTCGCACCACATGA..........................................................................2311.002.00------1.00--------------------------------------------------------------
..................................................................................................................................................................................TATGTGTGTCCTTTCTCCCCT...................................................211.000.00--------------------------1.00------------------------------------------
..............................................................................................................................................................................................................AAGAACCGTTTCCACCGTGTTTTCTT..................2611.001.00----1.00----------------------------------------------------------------
.........................................................................................................................................................TGGAGAAAGGTCGCAGT................................................................................171.000.00--------------------------1.00------------------------------------------
.................................................................................................................................................................................ATATGTGTGTCCTTTCTCCCCATT.................................................241.000.00-------1.00-------------------------------------------------------------
...........................................................................................................................................................................................................ATTAAGAACCGTTTCCACCGTG.........................2211.001.00-------------------------------1.00-------------------------------------
....................................................................................................................................................................................TGTGTGTCCTTTCTCCCCAGTAA...............................................2311.001.00----------------------------------1.00----------------------------------
.................................................................................................................................................................................ATATGTGTGTCCTTTCTCCCTT...................................................221.000.00--------------1.00------------------------------------------------------
.........................................................................................................................................................TGGAGAAAGGTCGCACCACATTTT.........................................................................2411.007.00-------------------------------------------------------1.00-------------
.......................................................................................................................................................GCTGGAGAAAGGTCGCACCACATGA..........................................................................2511.001.00---------------------1.00-----------------------------------------------
...................................................................................................................................................................................ATGTGTGTCCTTTCTCCCCAGC.................................................2211.001.00--------------------------------------1.00------------------------------
.......................................................................................................................................................GCTGGAGAAAGGTCGCACCACATGCCA........................................................................2711.001.00---1.00-----------------------------------------------------------------
..................................................................................................................................................................................TATGTGTGTCCTTTCTCC......................................................1811.001.00--------------------------------1.00------------------------------------
....................................................................................................................................................................................TGTGTGTCCTTTCTCCCCAG..................................................2011.001.00-----1.00---------------------------------------------------------------
........................................................................................................................................................CTGGAGAAAGGTCGCTGA................................................................................181.000.00--------------------1.00------------------------------------------------
..............................................................................................................................................................................................................AAGAACCGTTTCCACCGTGTTTT.....................2311.001.00----1.00----------------------------------------------------------------
..........................................................................................................................................................................................................AATTAAGAACCGTTTCCACCGT..........................2211.001.00-----1.00---------------------------------------------------------------
........................................................................................................................................................CTGGAGAAAGGTCGCACCACCT............................................................................221.000.00----------------------------------------------------------1.00----------
........................................................................................................................................................CTGGAGAAAGGTCGCACCACAT............................................................................2211.001.00--------------1.00------------------------------------------------------
..........................................................................................................AGACTCCAGTGCAGGACT..............................................................................................................................1820.500.50------------------------------0.50--------------------------------------

Antisense strand
GTTGATGCCTGCTCAGGCTTTGTCTCAGGTTCTCTAAAGTGCTTTCTGCCCCAGGGCAAGCATATTCCTCTTTTAGTCCACATATCATGTCCTGCCCCATCTCAGTAGACTCCAGTGCAGGACTAAGCCCTCCGTGGTGCCGTGAAGCAGAGCTGGAGAAAGGTCGCACCACATGCCATATGTGTGTCCTTTCTCCCCAGGTAATTAAGAACCGTTTCCACCGTGTTTTCTTGCCCTCCCACTCACTGGA
..........................................................................................................................................................(((((((((.(((((............))))).)))))))))......................................................
..................................................................................................................................................147..................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR685340(GSM1079784)
Small RNAs (15-50 nts in length) from immorta. (dicer cell line)		SRR394084(GSM855970)
background strain: C57BL6/SV129cell type: KRa. (dicer cell line)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)		SRR073955(GSM629281)
total RNA. (blood)		SRR306530(GSM750573)
19-24nt. (ago2 brain)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR525242(SRA056111/SRX170318)
Mus musculus domesticus miRNA sequencing. (ago2 Blood)		SRR065056(SRR065056)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		mjTestesWT2()
Testes Data. (testes)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR023849(GSM307158)
NPCsmallrna_rep1. (cell line)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		SRR037898(GSM510434)
ovary_rep3. (ovary)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		SRR206942(GSM723283)
other. (brain)		SRR116846(GSM678422)
Small RNA deep sequencing from mouse epididym. (epididymis)		SRR059767(GSM562829)
DN3_Dicer. (thymus)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		GSM314559(GSM314559)
ESC dgcr8 (454). (ESC)		GSM475279(GSM475279)
Miwi-IP. (miwi testes)		SRR306539(GSM750582)
19-24nt. (ago2 brain)		SRR065049(SRR065049)
Tissue-specific Regulation of Mouse MicroRNA . (liver)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)		SRR306537(GSM750580)
19-24nt. (ago2 brain)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)		GSM510444(GSM510444)
brain_rep5. (brain)		Ago2IP504(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR206941(GSM723282)
other. (brain)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR060845(GSM561991)
total RNA. (brain)		SRR685339(GSM1079783)
Small RNAs (15-50 nts in length) from immorta. (cell line)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR390299(GSM849857)
cell line: NIH-3T3cell type: fibroblastip ant. (ago2 fibroblast)		SRR525238(SRA056111/SRX170314)
Second IgG control. (Blood)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR073954(GSM629280)
total RNA. (blood)		SRR042457(GSM539849)
mouse mast cells [09-002]. (bone marrow)
..................................................................CCTCTTTTAGTCCACATATCATGTCC.............................................................................................................................................................. 2612.002.00-------------------------2.00-------------------------------------------
.......................................................................................TGTCCTGCCCCATCTCAGT................................................................................................................................................ 1912.002.00------------------2.00--------------------------------------------------
.........................................................................TAGTCCACATATCATTATA.............................................................................................................................................................. 191.000.00-------------------------------------------------------------1.00-------
..................................................................................................................................................................................TATGTGTGTCCTTTCATGA..................................................... 191.000.00--------------------1.00------------------------------------------------
.........................CAGGTTCTCTAAAGTGCGC.............................................................................................................................................................................................................. 191.000.00------------------------------1.00--------------------------------------
........................................................................................................................................................................................TGTCCTTTCTCCCCAGTAA............................................... 191.000.00------------------------------------------------1.00--------------------
................................................................................................................................................................................................................................GTTTTCTTGCCCTCCCAA........ 181.000.00-------------------------------------------------------------------1.00-
.......................................................................TTTAGTCCACATATCGT.................................................................................................................................................................. 171.000.00------------------------------------------------------1.00--------------
...........................................................................................................................................................................................CCTTTCTCCCCAGGTAG.............................................. 171.000.00------------------------1.00--------------------------------------------
........................................................................................GTCCTGCCCCATCTCAGTTT.............................................................................................................................................. 201.000.00-----------------------------------------------------------------1.00---
................................................................................................CCATCTCAGTAGACTCCTCG...................................................................................................................................... 201.000.00----------------------1.00----------------------------------------------