ID: uc009nij.14
GENE: Dhx38(12)
chr8:112080394-112080823-


(1)
AGO.mut 		(11)
AGO2.ip 		(1)
AGO3.ip 		(4)
B-CELL 		(27)
BRAIN 		(3)
CELL-LINE 		(2)
DCR.mut 		(2)
DGCR8.mut 		(7)
EMBRYO 		(8)
ESC 		(5)
FIBROBLAST 		(1)
HEART 		(7)
LIVER 		(1)
LUNG 		(3)
LYMPH 		(9)
OTHER 		(12)
OTHER.mut 		(4)
PIWI.ip 		(1)
PIWI.mut 		(2)
SKIN 		(2)
SPLEEN 		(27)
TESTES 		(1)
TOTAL-RNA 		(1)
UTERUS

Sense strand
CAGTACCTGCCCATCTTTGCCGTGCAGCAGGAGCTGCTCACCATCATCAGGTAACGGCCCAGGCCCCGTGGCTCTCCTGTCTGTGCATTGTCTAATGGGCAAGGGAAACACTTTGCCCGTAATGGGCTGGCTGAGTGTGTGCTGCGCACAGTAAGATGACATCACTTCCTTTAGTGGTCCAGGTTCACCTTGACTGGGTCCCTGGCATCTCATGTGGAAGCCCCATAAGATGCTGGTTTCTGGTGAACCCTCTGGCCATGAATGCTTCTTGCAGAGCTAGGCTTTGCCAGAGGCAGCCAGACTTAAGGCTTCTCAGGGAATTGTCTCAAGCTTGGCTTTCCTCTCAGGCTGCTCAGTGCCTTGCTTGCTCTTCCCTGCAGAGACAACAGCATTGTGATCGTGGTCGGGGAGACAGGGAGTGGCAAGACCA
.......................................................................................................................................................................................................................................................................................................................(((((((((......(((((..(((......((.((....)).)).)))..)))))...))))))).))..................................................
..................................................................................................................................................................................................................................................................................................................307......................................................................380................................................
SizePerfect hitTotal NormPerfect NormSRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		mjLiverWT2()
Liver Data. (liver)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		mjLiverKO1()
Liver Data. (Zcchc11 liver)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		GSM509280(GSM509280)
small RNA cloning by length. (testes)		SRR206940(GSM723281)
other. (brain)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		mjLiverWT1()
Liver Data. (liver)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR306543(GSM750586)
19-24nt. (ago2 brain)		SRR014231(GSM319955)
16.5 dpc total. (testes)		mjLiverKO3()
Liver Data. (Zcchc11 liver)		SRR206939(GSM723280)
other. (brain)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		SRR402760(SRX117943)
source: ES E14 male cells. (ESC)		SRR402761(SRX117944)
source: ES E14 male cells. (ESC)		SRR042477(GSM539869)
mouse brain tissue [09-002]. (brain)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR029041(GSM433293)
6w_homo_tdrd6-KO. (tdrd6 testes)		SRR390299(GSM849857)
cell line: NIH-3T3cell type: fibroblastip ant. (ago2 fibroblast)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR206941(GSM723282)
other. (brain)		SRR073954(GSM629280)
total RNA. (blood)		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		mjTestesWT2()
Testes Data. (testes)		SRR553582(SRX182788)
source: Brain. (Brain)		SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR206942(GSM723283)
other. (brain)		SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)		SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR363959(GSM822761)
AdultSmall RNA Miwi IPread_length: 36. (testes)		SRR023849(GSM307158)
NPCsmallrna_rep1. (cell line)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR306536(GSM750579)
19-24nt. (ago2 brain)		GSM475281(GSM475281)
total RNA. (testes)		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)		SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)		GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		mjTestesWT1()
Testes Data. (testes)		SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)		RuiDGCR8WT(Rui)
DGCR8-dependent microRNA biogenesis is essent. (skin)		SRR306531(GSM750574)
19-24nt. (ago2 brain)		SRR014229(GSM319953)
10 dpp MILI. (mili testes)		SRR029039(GSM433291)
25dpp_homo_tdrd6-KO. (tdrd6 testes)		mjTestesKO5()
Testes Data. (Zcchc11 testes)		SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR037922(GSM510460)
e12p5_rep4. (embryo)		SRR042473(GSM539865)
mouse nTreg cells [09-002]. (lymph)		SRR306539(GSM750582)
19-24nt. (ago2 brain)		SRR038741(GSM527276)
small RNA-Seq. (brain)		SRR346415(SRX098256)
source: Testis. (Testes)		GSM510453(GSM510453)
newborn_rep9. (total RNA)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR553603(SRX182809)
source: Spermatids. (Spermatids)		SRR029040(GSM433292)
6w_hetero_tdrd6-KO. (tdrd6 testes)		SRR037936(GSM510474)
293cand1. (cell line)		SRR306529(GSM750572)
19-24nt. (ago2 brain)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR038743(GSM527278)
small RNA-Seq. (dicer brain)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		SRR685340(GSM1079784)
Small RNAs (15-50 nts in length) from immorta. (dicer cell line)		SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)		SRR116846(GSM678422)
Small RNA deep sequencing from mouse epididym. (epididymis)		SRR346414(SRX098255)
Global profiling of miRNA and the hairpin pre. (Spleen)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR095855BC3(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)
.......................................................................................................................................................................................................................................................................................................................CTCAGGGAATTGTCTCAAGCTTGGC..............................................................................................251105.00105.0047.00-10.003.007.00-9.007.001.001.003.00-2.00----------1.00-1.002.002.00--1.001.00------------------2.00-------------1.00-------1.00-------1.00-1.00-----------1.00-------------
......................................................................................................................................................................................................................................................................................................................TCTCAGGGAATTGTCTCAAGCTTGGC..............................................................................................26135.0035.0017.00--2.00-2.002.00---2.004.00-1.00-1.001.00---1.00----1.00---------------------------------------------------------1.00------------------------
........................................................................................................................................................................................................................................................................................................................TCAGGGAATTGTCTCAAGCTTGGC..............................................................................................24133.0033.0017.00-3.00-4.00-2.002.00--1.00-------1.00-------------------------1.00-------1.00--------1.00----------------------------------------------
.......................................................................................................................................................................................................................................................................................................................CTCAGGGAATTGTCTCAAGCTTGG...............................................................................................24131.0031.00-1.001.004.002.004.00--2.001.00--1.00-3.00------1.00-1.00--1.00--2.00------------------1.001.00--1.00-----1.00-------------------------------------1.00---1.00-1.00-----
.......................................................................................................................................................................................................................................................................................................................CTCAGGGAATTGTCTCAAGCTTGT...............................................................................................24119.008.00-18.00-------1.00--------------------------------------------------------------------------------------------------
........................................................................................................................................................................................................................................................................................................................TCAGGGAATTGTCTCAAGCTTGG...............................................................................................23118.0018.002.00--2.00---1.002.00------2.001.00--1.00-1.00---------1.00--1.00-------------1.00--2.00-------------------------------------1.00------------------
......................................................................................................................................................................................................................................................................................................................TCTCAGGGAATTGTCTCAAGCTT.................................................................................................23112.0012.00----1.00---1.00--1.00--2.00-----1.001.00-----1.00---------------------1.00---1.00------------1.00----------1.00------------------------------
.......................................................................................................................................................................................................................................................................................................................CTCAGGGAATTGTCTCAAGCTT.................................................................................................2219.009.00-----3.00---------------1.00------1.00----1.00-------------1.00-------------------------------------1.001.00---------------------
......................................................................................................................................................................................................................................................................................................................TCTCAGGGAATTGTCTCAAGCTTGG...............................................................................................2518.008.001.00--1.001.00--1.00---2.00--------1.00--1.00------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................CTCAGGGAATTGTCTCAAGCTTG................................................................................................2318.008.00----------------1.00-3.00-----------1.00------------2.00------------------------------1.00---------------------------------
.......................................................................................................................................................................................................................................................................................................................CTCAGGGAATTGTCTCAAGCTTGGCT.............................................................................................2617.007.00-----6.00--------------------------------1.00---------------------------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................CAGGGAATTGTCTCAAGCTTGG...............................................................................................2216.006.00-----3.00---------1.00----------------------------------------------------------------------------------1.00-----1.00---
......................................................................................................................................................................................................................................................................................................................TCTCAGGGAATTGTCTCAAGCTTG................................................................................................2415.005.00--1.00----1.00-----------1.00----1.00----------------------1.00------------------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................CTCAGGGAATTGTCTCAAGCTTGGT..............................................................................................2515.0031.001.00-1.001.00--2.00-----------------------------------------------------------------------------------------------------
........................................................................................................................................................................................................................................................................................................................TCAGGGAATTGTCTCAAGCTTGGCT.............................................................................................2514.004.00--1.00-1.00------------------------------------1.00---------------------------1.00--------------------------------------
.....................................................................................................................................................................................................................................................................................................................TTCTCAGGGAATTGTCTCAAG....................................................................................................2114.004.00-----------------4.00------------------------------------------------------------------------------------------
........................................................................................................................................................................................................................................................................................................................TCAGGGAATTGTCTCAAGCTTG................................................................................................2214.004.00-------------------1.00-----------------2.00-------------------------------------------------------------------1.00--
.........................................................................................................................................................................................................................................................................................................................CAGGGAATTGTCTCAAGCTTGGC..............................................................................................2313.003.001.00---1.00-----------1.00-------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................CTTGCTTGCTCTTCCCTGCAGT.................................................223.000.00---------1.00---------1.00------------------------------------------------1.00---------------------------------------
......................................................................................................................................................................................................................................................................................................................TCTCAGGGAATTGTCTCAAGCTTGGCT.............................................................................................2713.003.001.00-------------------------------------1.00--------------------------------------------------------------1.00------
.....................................................................................................................................................................................................................................................................................................................TTCTCAGGGAATTGTCTCAAGCTTG................................................................................................2513.003.00------------1.00-----------2.00-----------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................TGATCGTGGTCGGGGAGACAGGGAGT..........2613.003.00----------------------3.00-------------------------------------------------------------------------------------
......................................................................................................................................................................................................................................................................................................................TCTCAGGGAATTGTCTCAAGCTTGGA..............................................................................................2613.008.00---------1.00-----1.00----1.00---------------------------------------------------------------------------------------
.....................................................................................................................CGTAATGGGCTGGC...........................................................................................................................................................................................................................................................................................................1422.502.50--------------------------------2.50---------------------------------------------------------------------------
......................................................................................................................................................................................................................................................................................................................TCTCAGGGAATTGTCTCAAGCTTGA...............................................................................................2512.005.001.00---------------------------------------------------------------------------------------1.00-------------------
........................................................................................................................................................................................................................................................................................................................TCAGGGAATTGTCTCAAGCTTGGCTTT...........................................................................................2712.002.00-------------------------1.00--------------1.00-------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................GGGAATTGTCTCAAGCTTGGCT.............................................................................................2212.002.00------------2.00-----------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................CTCAGGGAATTGTCTCAAGCTTGGCTTT...........................................................................................2812.002.00---------1.00---------------------------------------------------------------------------------1.00----------------
......................................................................................................................................................................................................................................................................................................................TCTCAGGGAATTGTCTCAAGCTTGGCTTT...........................................................................................2912.002.001.00-----------------------------------------------------------------------------------------1.00-----------------
..............................................................................................................................................................................................................................................................................................................................................................................................................CGTGGTCGGGGAGACAGGGA............2012.002.00----------------------------------------------2.00-------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................GAGACAACAGCATTGTGATCGTGGTC.........................2612.002.00------------------------------------------------------1.00---------------1.00-------------------------------------
..........................................................................................................................................................................................................................................................................................................................AGGGAATTGTCTCAAGCTTGGCTTT...........................................................................................2512.002.00-----------------------------------------------------------2.00------------------------------------------------
......................................................................................................................................................................................................................................................................................................................TCTCAGGGAATTGTCTCAAGCTTGGCA.............................................................................................2712.0035.00---1.00----1.00---------------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................................................................................................................TCTCAGGGAATTGTCTCAAG....................................................................................................2012.002.00--------1.00---------------------1.00-----------------------------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................................................................TGCCTTGCTTGCTCTTCCCTGCAG..................................................2412.002.001.00-1.00---------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................TTCTCAGGGAATTGTCTCAAGCT..................................................................................................2312.002.00---------1.00------------------------------------------------------------------1.00-------------------------------
......................................................................................................................................................................................................................................................................................................................TCTCAGGGAATTGTCTCAAGC...................................................................................................2112.002.001.00----------------------------------------------------------------------------------------------1.00------------
.......................................................................................................................................................................................................................................................................................................................................................................................................TTGTGATCGTGGTCGGGGAGACAG...............2412.002.00----------------------------2.00-------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................AGAGACAACAGCATTGTGATCGT.............................2312.002.00-----------------------------1.00-------------------------------------------------------------------1.00----------
......................................................................................................................................................................................................................................................................................................................TCTCAGGGAATTGTCTCAAGCTTGT...............................................................................................2511.005.00-----------------------------------1.00------------------------------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................CTCAGGGAATTGTCTCAAGCTTGGA..............................................................................................2511.0031.001.00-----------------------------------------------------------------------------------------------------------
............................AGGAGCTGCTCACCATCA................................................................................................................................................................................................................................................................................................................................................................................................1811.001.00----------------------------------------1.00-------------------------------------------------------------------
........................................................................................................................AATGGGCTGGCTGAGTGTGTGCT...............................................................................................................................................................................................................................................................................................2311.001.00----1.00-------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................CTCAGGGAATTGTCTCAAGCTA.................................................................................................221.000.00---1.00--------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................TTCTCAGGGAATTGTCTCAAGCTT.................................................................................................2411.001.00---1.00--------------------------------------------------------------------------------------------------------
........................................................................................................................................................................................................................................................................................................................TCAGGGAATTGTCTCAAGCTTGT...............................................................................................2311.004.001.00-----------------------------------------------------------------------------------------------------------
........................................................................................................................AATGGGCTGGCTGAGTG.....................................................................................................................................................................................................................................................................................................1711.001.00-------------------------------------------------------1.00----------------------------------------------------
.........................................................................................................................ATGGGCTGGCTGAGTGGAG..................................................................................................................................................................................................................................................................................................191.000.00-----------------------------------------------------------------------1.00------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................GATCGTGGTCGGGGATT..................171.000.00-----------------------------------1.00------------------------------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................CTCAGGGAATTGTCTCAAGCCTGT...............................................................................................241.000.00-1.00----------------------------------------------------------------------------------------------------------
........................................................................................................................................................................................................................................................................................................................................................................................................TGTGATCGTGGTCGGGGAGACAGGGAG...........2711.001.00----------------------1.00-------------------------------------------------------------------------------------
......................................................................................................................................................................................................................................................................................................................TCTCAGGGAATTGTCTCAAGCT..................................................................................................2211.001.00---------------------------------------------------------------------------1.00--------------------------------
......................................................................................................................................................................................................................................................................................................................TCTCAGGGAATTGTCTCAAGCTTTGC..............................................................................................2611.0012.001.00-----------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................CTCAGGGAATTGTCTCAAGCTTGGTATT...........................................................................................2811.0031.001.00-----------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................TTCTCAGGGAATTGTCTCAAGCTTGGCTTTCCTCTCAGGCTGCTCAGTGCCTTGCTTGCTCTTCCCTGCAG..................................................7111.001.00--------------------------------------------------------------1.00---------------------------------------------
.......................................................................................................................................................................................................................................................................................................................CTCAGGGAATTGTCTCAAG....................................................................................................1911.001.00-------------------------------1.00----------------------------------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................TTCTCAGGGAATTGTCTCAAGCTTGGCTT............................................................................................2911.001.00-------------1.00----------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................AGGGAATTGTCTCAAGCTTGGCTTTT..........................................................................................2611.002.00--------------------------------------------------------1.00---------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................CTCAGGGAATTGTCTCAAGCTTGTC..............................................................................................2511.008.001.00-----------------------------------------------------------------------------------------------------------
................................................................................................................................................................................................................................................................................................................................................TTTCCTCTCAGGCTGCTCAGTGC.......................................................................2311.001.00---------------------------------1.00--------------------------------------------------------------------------
............................................................................................................................................................................................................................................................................................................................................................................................AGACAACAGCATTGTGATCGTGGTCGGG......................2811.001.00-------------1.00----------------------------------------------------------------------------------------------
......................................................................................................................GTAATGGGCTGGCTGAGTGTGTGCTG..............................................................................................................................................................................................................................................................................................2611.001.00------------------------------------------------------1.00-----------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................CTCAGGGAATTGTCTCAAGCTTGGAC.............................................................................................2611.0031.00---1.00--------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................................................................................................TTAAGGCTTCTCAGGGAATTGTCTCA......................................................................................................2611.001.00---------------------------------------------------------------------------------1.00--------------------------
......................................................................................................................................................................................................................................................................................................................TCTCAGGGAATTGTCTCAAGCTTGGCAT............................................................................................2811.0035.00--------1.00---------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................ACAACAGCATTGTGATCGTG............................2011.001.00-------------1.00----------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................ACAACAGCATTGTGATCGTGGTCGGGG.....................2711.001.00-------------1.00----------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................TTCTCAGGGAATTGTCTCAAGCA..................................................................................................231.000.00----------------------------------1.00-------------------------------------------------------------------------
......................................................................................................................................................................................................................................................................................................................TCTCAGGGAATTGTCTCAAGCTTGGCTTTC..........................................................................................3011.001.00------------------------------------------------------------------------------1.00-----------------------------
........................................................................................................................................................................................................................................................................................................................TCAGGGAATTGTCTCAAGCTTGGT..............................................................................................2411.0018.00---1.00--------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................CTCAGGGAATTGTCTCAAGCTTTGC..............................................................................................2511.009.00---------------------------------------1.00--------------------------------------------------------------------
......................................................................................................................................................................................................................................................................................................................TCTCAGGGAATTGTCTCAAGCTTGGCTTTTT.........................................................................................3111.002.00-------------------------------------------------------------------1.00----------------------------------------
......................................................................................................................................................................................................................................................................................................................TCTCAGGGAATTGTCTCAAGATT.................................................................................................2311.002.001.00-----------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................CAGCATTGTGATCGTGGTC.........................1911.001.00---------------------------------------1.00--------------------------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................CAACAGCATTGTGATCGTGGTCG........................2311.001.00--------------------------------------------------------1.00---------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................ACAACAGCATTGTGATCGTGGTCGG.......................2511.001.00-------------------------------------------------------------------------------1.00----------------------------
........................................................................................................................................................................................................................................................................................................................TCAGGGAATTGTCTCAAGCT..................................................................................................2011.001.00----------------------------------------------------------1.00-------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................CATTGTGATCGTGGTCGGGG.....................2011.001.00---------------------------------------------------------------------------------------1.00--------------------
...............................................................................................................................TGGCTGAGTGTGTGCTGCGCACAGTAAGATGAC..............................................................................................................................................................................................................................................................................3311.001.00-----------------------------------------------------------------1.00------------------------------------------
...............TTTGCCGTGCAGCAGACCT............................................................................................................................................................................................................................................................................................................................................................................................................191.000.00---------------------------------------------------------1.00--------------------------------------------------
....................................................................................................................................................................................................................................................................................................................................................................TGCCTTGCTTGCTCTTCCCTGC....................................................2211.001.00---------------------------------------------------------------------------------------------1.00--------------
..........................................................................................................................TGGGCTGGCTGAGTGTAC..................................................................................................................................................................................................................................................................................................181.000.00---------------------------------------------1.00--------------------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................TTCTCAGGGAATTGTCTCAAGCTTGGCTTTC..........................................................................................3111.001.00---------------------------------------------------------------1.00--------------------------------------------
........................................................................................................................................................................................................................................................................................................................TCAGGGAATTGTCTCAAGCTTGGCAT............................................................................................2611.0033.001.00-----------------------------------------------------------------------------------------------------------
........................................................................................................................................................................................................................................................................................................................TCAGGGAATTGTCTCAAGCTTGGCTA............................................................................................2611.004.00--1.00---------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................CTCAGGGAATTGTCTCAAGCTTGGCTT............................................................................................2711.001.00-----------------------------------------------------1.00------------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................TTGTGATCGTGGTCGGGGAGAC.................2211.001.00----------1.00-------------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................CAGGGAATTGTCTCAAGCTTGGCAT............................................................................................2511.003.001.00-----------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................ACAGCATTGTGATCGTGGTCGGGGA....................2511.001.00------------------------------------------1.00-----------------------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................CAACAGCATTGTGATCGTGGTCGGG......................2511.001.00-------------1.00----------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................CTTGCTTGCTCTTCCCTGCCGA.................................................221.000.00-----------------------------------------1.00------------------------------------------------------------------
............................................................................................................................................................................................................................................................................................................................................................................................................ATCGTGGTCGGGGAGACT................181.000.00-------------------------------------------------------------------------1.00----------------------------------
......................................................................................................................................................................................................................................................................................................................................................................CCTTGCTTGCTCTTCCCTGCA...................................................2111.001.00--------------------------------------------1.00---------------------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................CAACAGCATTGTGATCGTGGTCGGGT.....................2611.001.00------------------------------------------1.00-----------------------------------------------------------------
......................................................................................................................................................................................................................................................................................................................................................................................................ATTGTGATCGTGGTCGGGGAGAC.................2311.001.00-------1.00----------------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................................................................................................................................................................CCTTGCTTGCTCTTCCCTGCAT..................................................2211.001.001.00-----------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................GATCGTGGTCGGG......................1350.200.20----------------------------------------------------------------------------------------------------------0.20-
.................................................................................................................................................................................................................................................GGTGAACCCTCTGGC..............................................................................................................................................................................1550.200.20-----------------------------------------------------------------------------------------------------------0.20
.................................................................................................................................................................................................................................TAAGATGCTGGTTTC..............................................................................................................................................................................................1590.110.11------------------------------------------------------------0.11-----------------------------------------------

Antisense strand
CAGTACCTGCCCATCTTTGCCGTGCAGCAGGAGCTGCTCACCATCATCAGGTAACGGCCCAGGCCCCGTGGCTCTCCTGTCTGTGCATTGTCTAATGGGCAAGGGAAACACTTTGCCCGTAATGGGCTGGCTGAGTGTGTGCTGCGCACAGTAAGATGACATCACTTCCTTTAGTGGTCCAGGTTCACCTTGACTGGGTCCCTGGCATCTCATGTGGAAGCCCCATAAGATGCTGGTTTCTGGTGAACCCTCTGGCCATGAATGCTTCTTGCAGAGCTAGGCTTTGCCAGAGGCAGCCAGACTTAAGGCTTCTCAGGGAATTGTCTCAAGCTTGGCTTTCCTCTCAGGCTGCTCAGTGCCTTGCTTGCTCTTCCCTGCAGAGACAACAGCATTGTGATCGTGGTCGGGGAGACAGGGAGTGGCAAGACCA
.......................................................................................................................................................................................................................................................................................................................(((((((((......(((((..(((......((.((....)).)).)))..)))))...))))))).))..................................................
..................................................................................................................................................................................................................................................................................................................307......................................................................380................................................
SizePerfect hitTotal NormPerfect NormSRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		mjLiverWT2()
Liver Data. (liver)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		mjLiverKO1()
Liver Data. (Zcchc11 liver)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		GSM509280(GSM509280)
small RNA cloning by length. (testes)		SRR206940(GSM723281)
other. (brain)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		mjLiverWT1()
Liver Data. (liver)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR306543(GSM750586)
19-24nt. (ago2 brain)		SRR014231(GSM319955)
16.5 dpc total. (testes)		mjLiverKO3()
Liver Data. (Zcchc11 liver)		SRR206939(GSM723280)
other. (brain)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		SRR402760(SRX117943)
source: ES E14 male cells. (ESC)		SRR402761(SRX117944)
source: ES E14 male cells. (ESC)		SRR042477(GSM539869)
mouse brain tissue [09-002]. (brain)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR029041(GSM433293)
6w_homo_tdrd6-KO. (tdrd6 testes)		SRR390299(GSM849857)
cell line: NIH-3T3cell type: fibroblastip ant. (ago2 fibroblast)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR206941(GSM723282)
other. (brain)		SRR073954(GSM629280)
total RNA. (blood)		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		mjTestesWT2()
Testes Data. (testes)		SRR553582(SRX182788)
source: Brain. (Brain)		SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR206942(GSM723283)
other. (brain)		SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)		SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR363959(GSM822761)
AdultSmall RNA Miwi IPread_length: 36. (testes)		SRR023849(GSM307158)
NPCsmallrna_rep1. (cell line)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR306536(GSM750579)
19-24nt. (ago2 brain)		GSM475281(GSM475281)
total RNA. (testes)		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)		SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)		GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		mjTestesWT1()
Testes Data. (testes)		SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)		RuiDGCR8WT(Rui)
DGCR8-dependent microRNA biogenesis is essent. (skin)		SRR306531(GSM750574)
19-24nt. (ago2 brain)		SRR014229(GSM319953)
10 dpp MILI. (mili testes)		SRR029039(GSM433291)
25dpp_homo_tdrd6-KO. (tdrd6 testes)		mjTestesKO5()
Testes Data. (Zcchc11 testes)		SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR037922(GSM510460)
e12p5_rep4. (embryo)		SRR042473(GSM539865)
mouse nTreg cells [09-002]. (lymph)		SRR306539(GSM750582)
19-24nt. (ago2 brain)		SRR038741(GSM527276)
small RNA-Seq. (brain)		SRR346415(SRX098256)
source: Testis. (Testes)		GSM510453(GSM510453)
newborn_rep9. (total RNA)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR553603(SRX182809)
source: Spermatids. (Spermatids)		SRR029040(GSM433292)
6w_hetero_tdrd6-KO. (tdrd6 testes)		SRR037936(GSM510474)
293cand1. (cell line)		SRR306529(GSM750572)
19-24nt. (ago2 brain)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR038743(GSM527278)
small RNA-Seq. (dicer brain)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		SRR685340(GSM1079784)
Small RNAs (15-50 nts in length) from immorta. (dicer cell line)		SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)		SRR116846(GSM678422)
Small RNA deep sequencing from mouse epididym. (epididymis)		SRR346414(SRX098255)
Global profiling of miRNA and the hairpin pre. (Spleen)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR095855BC3(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)
..........................GCAGGAGCTGCTCACAGGG................................................................................................................................................................................................................................................................................................................................................................................................. 192.000.00------------------------------------2.00-----------------------------------------------------------------------
.....................................................................................................................................................AGTAAGATGACATCACACT...................................................................................................................................................................................................................................................................... 192.000.00------------------------------------------------------------------------------------1.00-------1.00---------------
...........................................................CAGGCCCCGTGGCTCTCCA................................................................................................................................................................................................................................................................................................................................................................ 191.000.00---------------------------------------------------------1.00--------------------------------------------------
......................................................................................................................................................................................................................................................................................................................................................CTCAGGCTGCTCAGTGACA..................................................................... 191.000.00---------------------------------------------1.00--------------------------------------------------------------
........................................................................................................................................................................................................................................................................................................................................................................TTGCTTGCTCTTCCCTCTC................................................... 191.000.00------------------------------------------------------------1.00-----------------------------------------------
....................................................................................................................................................CAGTAAGATGACATCACCTGA..................................................................................................................................................................................................................................................................... 211.000.00-------------------------------------------------------------------------------------------------------1.00----
.................................CTGCTCACCATCATCAA............................................................................................................................................................................................................................................................................................................................................................................................ 171.000.00---------------------------------------------------------------------------------------------------1.00--------
...............................................................................................................................................................................................................................................................................................................................................................CTCAGTGCCTTGCTTTGAT............................................................ 191.000.00-------------------------------------------------------1.00----------------------------------------------------