ID: uc009mod.10
GENE: Mast1(4)
chr8:87445082-87445288-


(19)
AGO2.ip 		(40)
BRAIN 		(2)
CELL-LINE 		(1)
DCR.mut 		(1)
DGCR8.mut 		(9)
EMBRYO 		(2)
ESC 		(1)
HEART 		(4)
OTHER 		(1)
PIWI.mut 		(4)
TESTES 		(2)
TOTAL-RNA 		(1)
UTERUS

Sense strand
GAGTACTTACACAATTATGGCATCGTGCACCGTGACCTCAAGCCAGACAAGTGAGCTTTGGCCTTCTTTATTCCTCTCCCATTGTTCCTTGGAAGACCCAGGGGTGAAGGGCAAGGATCTCACTTCTGAAACCTGCTCTGTGTCCTTGTCCCTGAAGCCTCCTCATTACTTCCATGGGCCACATCAAGCTCACGGATTTTGGCCTCT
..................................................................................................(((((..((.((((((((...(((....)))..)))......)))))))..))))).....................................................
...........................................................................................92...............................................................157................................................
SizePerfect hitTotal NormPerfect NormSRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		SRR306537(GSM750580)
19-24nt. (ago2 brain)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR306536(GSM750579)
19-24nt. (ago2 brain)		SRR553582(SRX182788)
source: Brain. (Brain)		SRR306540(GSM750583)
19-24nt. (ago2 brain)		SRR306531(GSM750574)
19-24nt. (ago2 brain)		SRR039610(GSM527274)
small RNA-Seq. (brain)		SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		SRR306544(GSM750587)
19-24nt. (ago2 brain)		GSM510444(GSM510444)
brain_rep5. (brain)		SRR306530(GSM750573)
19-24nt. (ago2 brain)		SRR306527(GSM750570)
19-24nt. (ago2 brain)		SRR306529(GSM750572)
19-24nt. (ago2 brain)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR306539(GSM750582)
19-24nt. (ago2 brain)		SRR037937(GSM510475)
293cand2. (cell line)		SRR037906(GSM510442)
brain_rep3. (brain)		SRR206941(GSM723282)
other. (brain)		SRR345204(SRX097265)
source: size fractionated RNA from mouse hipp. (brain)		SRR206942(GSM723283)
other. (brain)		SRR038741(GSM527276)
small RNA-Seq. (brain)		SRR306526(GSM750569)
19-24nt. (ago2 brain)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR037905(GSM510441)
brain_rep2. (brain)		GSM510455(GSM510455)
newborn_rep11. (total RNA)		mjTestesWT1()
Testes Data. (testes)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR042477(GSM539869)
mouse brain tissue [09-002]. (brain)		SRR206940(GSM723281)
other. (brain)		SRR306543(GSM750586)
19-24nt. (ago2 brain)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		SRR345206(SRX097267)
source: size fractionated RNA from mouse hipp. (brain)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR394084(GSM855970)
background strain: C57BL6/SV129cell type: KRa. (dicer cell line)		SRR553584(SRX182790)
source: Heart. (Heart)		SRR345205(SRX097266)
source: size fractionated RNA from mouse hipp. (brain)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR037914(GSM510451)
newborn_rep7. (total RNA)		SRR037907(GSM510443)
brain_rep4. (brain)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR014235(GSM319959)
2 dpp total. (testes)		SRR060845(GSM561991)
total RNA. (brain)		SRR037929(GSM510467)
e7p5_rep3. (embryo)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR306538(GSM750581)
19-24nt. (ago2 brain)		SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)
........................................................................................................................................TCTGTGTCCTTGTCCCTGAAG..................................................211106.00106.0011.0011.006.004.004.005.006.005.005.002.004.003.003.002.001.004.001.00-4.002.00-4.002.001.00-1.003.00-1.001.00-1.001.00-2.00-1.00--1.00---1.00---1.001.00---------1.00------
........................................................................................................................................TCTGTGTCCTTGTCCCTGAAGT.................................................22190.00106.001.004.009.006.007.008.003.003.003.005.003.003.003.001.001.002.004.005.001.001.002.00--2.00---2.00-1.002.00-1.002.00------2.001.00--------------1.001.00-------
........................................................................................................................................TCTGTGTCCTTGTCCCTGAAGA.................................................22118.00106.003.001.001.00-----1.001.00---1.001.00--1.00-2.00-------1.00----------1.001.00-1.002.00----------------------
........................................................................................................................................TCTGTGTCCTTGTCCCTGAAA..................................................2116.002.001.00-1.00-1.00--1.00------------2.00--------------------------------------------
................................................................................................CCCAGGGGTGAAGGGCAAGGATC........................................................................................2316.006.001.00-1.001.00-----1.00---------------1.00------------------1.00--------------------
........................................................................................................................................TCTGTGTCCTTGTCCCTGAAT..................................................2114.002.00---2.00------1.00-1.00----------------------------------------------------
........................................................................................................................................TCTGTGTCCTTGTCCCTGAAGTA................................................2314.00106.00--------1.00-----1.00----------1.00-----------1.00---------------------------
................................................................................................CCCAGGGGTGAAGGGCAAGGAT.........................................................................................2214.004.002.00-1.00---------------1.00----------------------------------------------
....................................................................................................................ATCTCACTTCTGAAACCA.........................................................................184.000.00------------------------1.00---------------------1.00----1.00---------1.00---
......................TCGTGCACCGTGACCTCAAGCCAGA................................................................................................................................................................2513.003.001.00----------2.00-----------------------------------------------------
........................................................................................................................................TCTGTGTCCTTGTCCCTGAAGC.................................................2212.002.00-1.00--------1.00------------------------------------------------------
........................................................................................................................................TCTGTGTCCTTGTCCCTGAA...................................................2012.002.00-1.00--------------1.00------------------------------------------------
.................................................................................................CCAGGGGTGAAGGGCAAGGAT.........................................................................................2112.002.001.00------------------------------------1.00---------------------------
...................................................................................................AGGGGTGAAGGGCAATC...........................................................................................172.000.00-------1.00-----1.00---------------------------------------------------
...............................................................................................ACCCAGGGGTGAAGGGCAAGGATC........................................................................................2412.002.00-----------------------------------2.00-----------------------------
........................................................................................................................................TCTGTGTCCTTGTCCCTGAAGTT................................................2312.00106.00--------------1.00----1.00---------------------------------------------
........................................................................................................................................TCTGTGTCCTTGTCCCTGAATA.................................................2211.002.00--------------------------------------1.00--------------------------
........................................................................................................................................TCTGTGTCCTTGTCCCTGACG..................................................2111.001.00------1.00----------------------------------------------------------
........................................................................................................................................TCTGTGTCCTTGTCCCTGAAGAT................................................2311.00106.00-1.00---------------------------------------------------------------
........................................................................................................................................TCTGTGTCCTTGTCCCTGA....................................................1911.001.00-1.00---------------------------------------------------------------
..........................................................................................GGAAGACCCAGGGGTCGGG..................................................................................................191.000.00-------------------------------------------------1.00---------------
...........................................................................................................................................GTGTCCTTGTCCCTGAAG..................................................1811.001.00-------------1.00---------------------------------------------------
................................................................................................CCCAGGGGTGAAGGGCAAGG...........................................................................................2011.001.00-------------1.00---------------------------------------------------
........ACACAATTATGGCATCGTGCACCGT..............................................................................................................................................................................2511.001.00------------------------------------------------------1.00----------
................................................................................................CCCAGGGGTGAAGGGCAAGGATCT.......................................................................................2411.001.00------------------------------------------------------------1.00----
.................................GACCTCAAGCCAGACAA.............................................................................................................................................................1711.001.00-1.00---------------------------------------------------------------
.......................................................................................................................................................................................TCAAGCTCACGGATTTTGG.....1911.001.00---------1.00-------------------------------------------------------
.........................................................................................................................................................................................AAGCTCACGGATTTTGGCC...1911.001.00----------------------------1.00------------------------------------
...............................................................................................ACCCAGGGGTGAAGGGCAAGGATAT.......................................................................................2511.001.00------1.00----------------------------------------------------------
................................................................................................CCCAGGGGTGAAGGGCAAGGATT........................................................................................2311.004.00--1.00--------------------------------------------------------------
........................................................................................................................................TCTGTGTCCTTGTCCCTGAAGAGT...............................................2411.00106.00----------------------1.00------------------------------------------
........ACACAATTATGGCATCGTGCACCG...............................................................................................................................................................................2411.001.00---------------------------------------------1.00-------------------
........................................................................................................................................TCTGTGTCCTTGTCCCTGAAGTTA...............................................2411.00106.00----1.00------------------------------------------------------------
...............................................................................................ACCCAGGGGTGAAGGGCAAGGATT........................................................................................2411.001.00---1.00-------------------------------------------------------------
......................TCGTGCACCGTGACCTGAAG.....................................................................................................................................................................201.000.00--------------------------------------------------------------1.00--
........................................................................................................................................TCTGTGTCCTTGTCCCTGAAAA.................................................2211.002.00------------------------------------1.00----------------------------
........................................................................................................TGAAGGGCAAGGATCTCACTT..................................................................................2111.001.00------------1.00----------------------------------------------------
...............................................................................................ACCCAGGGGTGAAGGGCAAGGAT.........................................................................................2311.001.00--------------------1.00--------------------------------------------
....................CATCGTGCACCGTGACCTCAAGC....................................................................................................................................................................2320.500.50--------------0.50--------------------------------------------------
......................TCGTGCACCGTGACCTCAAGCC...................................................................................................................................................................2220.500.500.50----------------------------------------------------------------
......................TCGTGCACCGTGACCTCA.......................................................................................................................................................................1820.500.50--------------0.50--------------------------------------------------
...................GCATCGTGCACCGTGAC...........................................................................................................................................................................1720.500.50--------------0.50--------------------------------------------------
.........................TGCACCGTGACCTCAAGC....................................................................................................................................................................1830.330.33---------------------------------------------------------------0.33-
..........................GCACCGTGACCTCAA......................................................................................................................................................................1560.170.17-------------------------------------------0.17---------------------

Antisense strand
GAGTACTTACACAATTATGGCATCGTGCACCGTGACCTCAAGCCAGACAAGTGAGCTTTGGCCTTCTTTATTCCTCTCCCATTGTTCCTTGGAAGACCCAGGGGTGAAGGGCAAGGATCTCACTTCTGAAACCTGCTCTGTGTCCTTGTCCCTGAAGCCTCCTCATTACTTCCATGGGCCACATCAAGCTCACGGATTTTGGCCTCT
..................................................................................................(((((..((.((((((((...(((....)))..)))......)))))))..))))).....................................................
...........................................................................................92...............................................................157................................................
SizePerfect hitTotal NormPerfect NormSRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		SRR306537(GSM750580)
19-24nt. (ago2 brain)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR306536(GSM750579)
19-24nt. (ago2 brain)		SRR553582(SRX182788)
source: Brain. (Brain)		SRR306540(GSM750583)
19-24nt. (ago2 brain)		SRR306531(GSM750574)
19-24nt. (ago2 brain)		SRR039610(GSM527274)
small RNA-Seq. (brain)		SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		SRR306544(GSM750587)
19-24nt. (ago2 brain)		GSM510444(GSM510444)
brain_rep5. (brain)		SRR306530(GSM750573)
19-24nt. (ago2 brain)		SRR306527(GSM750570)
19-24nt. (ago2 brain)		SRR306529(GSM750572)
19-24nt. (ago2 brain)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR306539(GSM750582)
19-24nt. (ago2 brain)		SRR037937(GSM510475)
293cand2. (cell line)		SRR037906(GSM510442)
brain_rep3. (brain)		SRR206941(GSM723282)
other. (brain)		SRR345204(SRX097265)
source: size fractionated RNA from mouse hipp. (brain)		SRR206942(GSM723283)
other. (brain)		SRR038741(GSM527276)
small RNA-Seq. (brain)		SRR306526(GSM750569)
19-24nt. (ago2 brain)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR037905(GSM510441)
brain_rep2. (brain)		GSM510455(GSM510455)
newborn_rep11. (total RNA)		mjTestesWT1()
Testes Data. (testes)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR042477(GSM539869)
mouse brain tissue [09-002]. (brain)		SRR206940(GSM723281)
other. (brain)		SRR306543(GSM750586)
19-24nt. (ago2 brain)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		SRR345206(SRX097267)
source: size fractionated RNA from mouse hipp. (brain)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR394084(GSM855970)
background strain: C57BL6/SV129cell type: KRa. (dicer cell line)		SRR553584(SRX182790)
source: Heart. (Heart)		SRR345205(SRX097266)
source: size fractionated RNA from mouse hipp. (brain)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR037914(GSM510451)
newborn_rep7. (total RNA)		SRR037907(GSM510443)
brain_rep4. (brain)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR014235(GSM319959)
2 dpp total. (testes)		SRR060845(GSM561991)
total RNA. (brain)		SRR037929(GSM510467)
e7p5_rep3. (embryo)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR306538(GSM750581)
19-24nt. (ago2 brain)		SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)
...............................................................................................................................................................................GGGCCACATCAAGCTCAA.............. 181.000.00------------------------1.00----------------------------------------
....................................................................................................................................CTGCTCTGTGTCCTTGTCCCAG..................................................... 221.000.00----------------------------------------------------1.00------------
...................GCATCGTGCACCGTGACCTCAAGCCAGA................................................................................................................................................................ 2811.001.00-----------------------------------------------------------1.00-----
.......................................................................................................................TCACTTCTGAAACCTGCTCTGTGTCCTTGT.......................................................... 3011.001.00-------------------------------------------------------1.00---------
...............................................................................................................................................CCTTGTCCCTGAAGCCTC.............................................. 1811.001.00-----------------------------------------------------1.00-----------
...............................................................................................................................................................TCCTCATTACTTCCATGGG............................. 1911.001.00-------------------------------1.00---------------------------------
...............................................................................................................................................................................GGGCCACATCAAGCTCTG.............. 181.000.00------------------------1.00----------------------------------------
.........................................................TTGGCCTTCTTTATTCCTCTCCCATT............................................................................................................................ 2611.001.00--------------------------------------------------1.00--------------
............................................................GCCTTCTTTATTCCTC................................................................................................................................... 1650.200.20----------------------------------------------------------------0.20