ID: uc009mdi.1
GENE: 1500034J01Rik(2)
chr8:73995967-73996143+


(1)
AGO.mut 		(3)
AGO1.ip 		(18)
AGO2.ip 		(2)
AGO3.ip 		(5)
B-CELL 		(34)
BRAIN 		(6)
CELL-LINE 		(3)
DCR.mut 		(3)
DGCR8.mut 		(12)
EMBRYO 		(6)
ESC 		(5)
FIBROBLAST 		(1)
HEART 		(1)
KIDNEY 		(5)
LIVER 		(1)
LUNG 		(1)
LYMPH 		(19)
OTHER 		(10)
OTHER.mut 		(6)
PIWI.ip 		(2)
PIWI.mut 		(8)
SKIN 		(7)
SPLEEN 		(30)
TESTES 		(2)
THYMUS 		(3)
TOTAL-RNA

Sense strand
ACAAGAGCAACTTCAGCAGGTTCCACGCGGACTCTGTGTGCAAGGCCTCGGTGAGTGTGGGGCTGGGGGTGGCGTCACTGTCCTGAGGATGAGGGTTGCCAGCTAACCCACCGCTCCCCATCCACAGAACCGCCGTCCCTCAGTATACCTGCCGACCCGAGAGTACCCGTCAGAACA
.......................................................((((((...((((((((((((.((......)))))).((((((.....)))))).))))))))..))))))...................................................
..................................................51..........................................................................127................................................
SizePerfect hitTotal NormPerfect NormSRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR306530(GSM750573)
19-24nt. (ago2 brain)		mjLiverKO1()
Liver Data. (Zcchc11 liver)		mjTestesWT1()
Testes Data. (testes)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		mjTestesWT2()
Testes Data. (testes)		mjTestesWT3()
Testes Data. (testes)		SRR306529(GSM750572)
19-24nt. (ago2 brain)		SRR685339(GSM1079783)
Small RNAs (15-50 nts in length) from immorta. (cell line)		SRR306531(GSM750574)
19-24nt. (ago2 brain)		SRR402760(SRX117943)
source: ES E14 male cells. (ESC)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		mjTestesWT4()
Testes Data. (testes)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		SRR023852(GSM307161)
ZHBT-c424hsmallrna_rep1. (cell line)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR685340(GSM1079784)
Small RNAs (15-50 nts in length) from immorta. (dicer cell line)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR059772(GSM562834)
CD4_Drosha. (spleen)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR059770(GSM562832)
Treg_Dicer. (spleen)		mjTestesKO6()
Testes Data. (Zcchc11 testes)		SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)		SRR306536(GSM750579)
19-24nt. (ago2 brain)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR038744(GSM527279)
small RNA-Seq. (brain)		GSM510444(GSM510444)
brain_rep5. (brain)		mjTestesKO5()
Testes Data. (Zcchc11 testes)		SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		SRR037929(GSM510467)
e7p5_rep3. (embryo)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR306537(GSM750580)
19-24nt. (ago2 brain)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR306539(GSM750582)
19-24nt. (ago2 brain)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		SRR029123(GSM416611)
NIH3T3. (cell line)		SRR039610(GSM527274)
small RNA-Seq. (brain)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		SRR206940(GSM723281)
other. (brain)		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR116846(GSM678422)
Small RNA deep sequencing from mouse epididym. (epididymis)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		SRR206942(GSM723283)
other. (brain)		SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)		GSM179088(GSM179088)
Developmentally regulated piRNA clusters implicate MILI in transposon control. (piwi testes)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		RuiDGCR8KO(Rui)
DGCR8-dependent microRNA biogenesis is essent. (dgcr8 skin)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)		SRR042445(GSM539837)
mouse immature B cells [09-002]. (b cell)		SRR037925(GSM510463)
e9p5_rep3. (embryo)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR306528(GSM750571)
19-24nt. (ago2 brain)		GSM475281(GSM475281)
total RNA. (testes)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)		SRR037906(GSM510442)
brain_rep3. (brain)		SRR059775(GSM562837)
MEF_Drosha. (MEF)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		GSM510454(GSM510454)
newborn_rep10. (total RNA)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		SRR037920(GSM510458)
e12p5_rep2. (embryo)		SRR037905(GSM510441)
brain_rep2. (brain)		SRR023850(GSM307159)
ZHBT-c40hsmallrna_rep1. (cell line)		GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)		SRR525240(SRA056111/SRX170316)
Mus musculus domesticus miRNA sequencing. (ago1 Blood)		SRR553582(SRX182788)
source: Brain. (Brain)		mjLiverKO3()
Liver Data. (Zcchc11 liver)		SRR038741(GSM527276)
small RNA-Seq. (brain)		SRR553584(SRX182790)
source: Heart. (Heart)		SRR059765(GSM562827)
DN3_control. (thymus)		SRR038743(GSM527278)
small RNA-Seq. (dicer brain)		SRR059776(GSM562838)
MEF_Dicer. (MEF)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR037902(GSM510438)
testes_rep3. (testes)		SRR073954(GSM629280)
total RNA. (blood)		SRR206941(GSM723282)
other. (brain)		SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		RuiDGCR8WT(Rui)
DGCR8-dependent microRNA biogenesis is essent. (skin)		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)		SRR042475(GSM539867)
mouse embryonic fibroblast cells [09-002]. (fibroblast)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)		SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)		SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR042484(GSM539876)
mouse salivary gland tissue [09-002]. (salivary gland)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)		SRR346415(SRX098256)
source: Testis. (Testes)		SRR206939(GSM723280)
other. (brain)		SRR042462(GSM539854)
mouse macrophages [09-002]. (bone marrow)		SRR346414(SRX098255)
Global profiling of miRNA and the hairpin pre. (Spleen)		Ago2IP517(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		SRR059766(GSM562828)
DN3_Drosha. (thymus)		SRR042467(GSM539859)
mouse T cells activated in vitro with Concanavalin A [09-002]. (spleen)		GSM510452(GSM510452)
newborn_rep8. (total RNA)		GSM475280(GSM475280)
Mili-IP. (mili testes)		SRR037901(GSM510437)
testes_rep2. (testes)		SRR306527(GSM750570)
19-24nt. (ago2 brain)		SRR069834(GSM304914)
Analysis of small RNAs in murine neutrophils cultured in vitro by Solexa/Illumina genome analyzer. (blood)		SRR038740(GSM527275)
small RNA-Seq. (dicer brain)		SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)		SRR042457(GSM539849)
mouse mast cells [09-002]. (bone marrow)		GSM510456(GSM510456)
newborn_rep12. (total RNA)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		GSM640579(GSM640579)
small RNA in the liver with paternal Low pro. (liver)		Ago2IP504(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		GSM314553(GSM314553)
ESC dcr (Illumina). (ESC)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR042455(GSM539847)
mouse plasma cells [09-002]. (blood)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)
..........................................................................................................CCCACCGCTCCCCATCCACAGT.................................................221235.0031.0028.0017.0012.004.007.008.00-10.0010.00-5.00--8.003.009.008.003.003.005.002.006.00-3.002.005.005.005.00-1.002.00-3.00--2.00-1.002.002.001.001.00-4.001.002.003.00-2.001.00-1.002.002.001.003.00-3.001.001.00-3.001.00--2.00---1.00--1.00---1.00---2.001.00-1.002.00-----------1.00------1.00-1.00----1.00--1.00----1.00----1.00--1.00-----1.00-1.00-----------
...........................................................................................................CCACCGCTCCCCATCCACAGT.................................................21143.009.007.005.00-6.002.00--2.00-----1.003.00--1.001.00-2.00------------1.00-1.00-1.001.00-----1.00-----------------1.00----------------------2.00-----1.00--------1.00-----------1.00-------------------------1.00-1.00-----
..........................................................................................................CCCACCGCTCCCCATCCACAG..................................................21131.0031.003.002.004.002.003.002.00----3.003.00------1.00--------------------1.003.001.00----------------------------------------------1.00-----------------1.00----------------------------1.00----------
..........................................................................................................CCCACCGCTCCCCATCCACAGA.................................................22129.0029.001.003.001.00-1.001.00--------3.00-----1.00--1.00-----1.00--1.00------1.00-1.00---1.00-----2.001.00---1.00--2.00-------1.00---1.00-----------------1.00---1.00----------------------------------1.00--------1.00--------
...........................................................................................................CCACCGCTCCCCATCCACAGA.................................................21112.0012.00-1.005.00-1.00------------------------------1.00----------------------2.00-----------------------------------------------------------------1.00--------1.00------------
...........................................................................................................CCACCGCTCCCCATCCACAG..................................................2019.009.001.001.001.001.00-1.00-----------1.00----------1.002.00--------------------------------------------------------------------------------------------------------------------
..................................................GTGAGTGTGGGGCTGGGGGTGGCGTCACTGTCCTGAGGATGAGGGTTGCCAGCTAACCCACCGCTCCCCATCCACAGTT................................................798.000.00------8.00-------------------------------------------------------------------------------------------------------------------------------------------
..................................................GTGAGTGTGGGGCTGGGGGTGGCGTC.....................................................................................................2617.007.00---------6.00------------------------------------------------------------------------1.00---------------------------------------------------------------
..........................................................................................................CCCACCGCTCCCCATCCACA...................................................2017.007.002.00---------1.00-------------------------------------------1.00----------------------2.00------------1.00-------------------------------------------------------
..........................................................................................................CCCACCGCTCCCCATCCCCAG..................................................217.000.00---2.003.00-----2.00---------------------------------------------------------------------------------------------------------------------------------------
.....................TCCACGCGGACTCTGTGTGCAAGGCC..................................................................................................................................2616.006.00---------------------------------------------------------------------------1.00--1.001.00----------------------1.00-----------------1.001.00------------------------
...................................................TGAGTGTGGGGCTGGGGGTGGCGT......................................................................................................2416.006.00----------------------6.00---------------------------------------------------------------------------------------------------------------------------
..................................................GTGAGTGTGGGGCTGGGGGTGGCGT......................................................................................................2516.006.00------------3.00---------------1.00-1.00---------------------------------------------------1.00---------------------------------------------------------------
.......................................................................................................TAACCCACCGCTCCCCATCCACAGT.................................................2515.002.00-1.00------------------------------------------1.00--1.00------1.00--------------------------------------------------------------1.00----------------------------
..........................................................................................................CCCACCGCTCCCCATCCACAGC.................................................2214.0031.00-1.001.00---------------------2.00-------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................TGCCGACCCGAGAGTACCCGTC......2214.004.00-------------------------------3.00----------------------------------1.00-------------------------------------------------------------------------------
............................................................................................................CACCGCTCCCCATCCACAGT.................................................204.000.00---------------------------------1.00-----------------------------------------------------1.00--------------------------1.00--------------1.00----------------
..................................................GTGAGTGTGGGGCTGGGGGTGGCGTCACTGTCCTGAGGATGAGGGTTGCCAGCTAACCCACCGCTCCCCATCCACAGA.................................................7813.003.00------3.00-------------------------------------------------------------------------------------------------------------------------------------------
..........................................................................................................CCCACCGCTCCCCATCCACCGT.................................................2213.001.001.00--1.00---------------------------------1.00------------------------------------------------------------------------------------------------------------
..........................................................................................................CCCACCGCTCCCCATCCACAGTT................................................2313.0031.00--1.00------------------------------------------------------------------1.00-1.00--------------------------------------------------------------------------
.......................................................................................................TAACCCACCGCTCCCCATCCACA...................................................2313.003.00------------------1.00----------1.00------------------1.00-------------------------------------------------------------------------------------------------
.....................TCCACGCGGACTCTGTGTGCAAGGCCT.................................................................................................................................2713.003.00------------------------------------------------------------2.00--------------1.00----------------------------------------------------------------------
.........................CGCGGACTCTGTGTGCAAGG....................................................................................................................................2013.003.00-----------3.00--------------------------------------------------------------------------------------------------------------------------------------
..........................................................................................................CCCACCGCTCCCCATCCACACC.................................................2213.007.00--3.00-----------------------------------------------------------------------------------------------------------------------------------------------
..................................................GTGAGTGTGGGGCTGGAAGA...........................................................................................................203.000.00------------------------------------3.00-------------------------------------------------------------------------------------------------------------
....................TTCCACGCGGACTCTGTGTGCAAGGCCT.................................................................................................................................2812.002.00------------------------------------------------------------1.00-----------------1.00-------------------------------------------------------------------
...........................................................................................................CCACCGCTCCCCATCCACAGTT................................................2212.009.001.00-----------------1.00-------------------------------------------------------------------------------------------------------------------------------
...................................................................................TGAGGATGAGGGTTGCCAGCTAACCCA...................................................................2712.002.00----------------------------2.00---------------------------------------------------------------------------------------------------------------------
..........................................................................................................CCCACCGCTCCCCATCCACAGTA................................................2312.0031.00-1.00----------------------1.00-------------------------------------------------------------------------------------------------------------------------
...........................CGGACTCTGTGTGCAAGG....................................................................................................................................1812.002.00------------2.00-------------------------------------------------------------------------------------------------------------------------------------
..........................................................................................................CCCACCGCTCCCCATCCACATT.................................................2212.007.002.00-------------------------------------------------------------------------------------------------------------------------------------------------
.............................................................GCTGGGGGTGGCGTCCGA..................................................................................................182.000.00-------------------2.00------------------------------------------------------------------------------------------------------------------------------
...................................................................................TGAGGATGAGGGTTGCCAGCTA........................................................................2212.002.00-----------------------------------------------2.00--------------------------------------------------------------------------------------------------
..................................................GTGAGTGTGGGGCTGGGGGTGGCGTCA....................................................................................................2712.002.00----------------------------------------------------------------------------------------------1.00--------------1.00------------------------------------
..................................................GTGAGTGTGGGGCTGGGGGTGGCG.......................................................................................................2412.002.00-----------1.00-------------------------------------1.00------------------------------------------------------------------------------------------------
..................................................GTGAGTGTGGGGCTGGGGGTGGCGTCACTGTCCTGAGGATGAGGGTTGCCAGCTAACCCACCGCTCCCCATCCACAGT.................................................782.000.00------2.00-------------------------------------------------------------------------------------------------------------------------------------------
..................................................................................CTGAGGATGAGGGTTGCC.............................................................................1812.002.00------------------------------1.00----------------------------------------------------------------------1.00--------------------------------------------
...........................................................................................................CCACCGCTCCCCATCCACAGTAA...............................................2312.009.00--------------------------------------------------------2.00-----------------------------------------------------------------------------------------
.......................................................................................................TAACCCACCGCTCCCCATCCACAG..................................................2412.002.00-1.00---1.00--------------------------------------------------------------------------------------------------------------------------------------------
...........................CGGACTCTGTGTGCAAG.....................................................................................................................................1712.002.00------------2.00-------------------------------------------------------------------------------------------------------------------------------------
..........................GCGGACTCTGTGTGCAAGGCCT.................................................................................................................................2212.002.00--------------------------------------------------2.00-----------------------------------------------------------------------------------------------
..............................................................................TGTCCTGAGGATGAGGGTTGCCAGCTA........................................................................2712.002.00--------------------------------------------------------------------2.00-----------------------------------------------------------------------------
..................................................GTGAGTGTGGGGCTGGGGGT...........................................................................................................2032.002.000.33-0.33----------------------0.33------------------0.330.33----------------------------------------0.33-----------------------------------------------------------
..........................................................................................................CCCACCGCTCCCCATCCACAGTAA...............................................2411.0031.00-1.00------------------------------------------------------------------------------------------------------------------------------------------------
.....................TCCACGCGGACTCTGTGTGCA.......................................................................................................................................2111.001.00--------------------1.00-----------------------------------------------------------------------------------------------------------------------------
.....................TCCACGCGGACTCTGTGTGCAAGGC...................................................................................................................................2511.001.00-----------1.00--------------------------------------------------------------------------------------------------------------------------------------
...AGAGCAACTTCAGCAAGT............................................................................................................................................................181.000.00--------------------------------------------------------------------------------------------------------1.00-----------------------------------------
........AACTTCAGCAGGTTCCACGCGGACTCTG.............................................................................................................................................2811.001.00----------------------------------1.00---------------------------------------------------------------------------------------------------------------
...........................................................................................................CCACCGCTCCCCATCCACAGAA................................................2211.001.00-----------------------1.00--------------------------------------------------------------------------------------------------------------------------
...................................................TGAGTGTGGGGCTGGGCG............................................................................................................181.000.00-------------------------------------------------------------------------1.00------------------------------------------------------------------------
...................................................................................TGAGGATGAGGGTTGCCA............................................................................1811.001.00--1.00-----------------------------------------------------------------------------------------------------------------------------------------------
.........................................................................GTCACTGTCCTGAGGATGAGGGTTGCCAGC..........................................................................3011.001.00-----------------------------------------------------------------------------------------------------------------------1.00--------------------------
............................................................................................................CACCGCTCCCCATCCACAGTTA...............................................221.000.00---1.00----------------------------------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................AGAGTACCCGTCAGAAC.1711.001.00------------------------------------------1.00-------------------------------------------------------------------------------------------------------
...............................................................................................................................................................AGAGTACCCGTCAGAACCGGG2111.001.00--------------------------------------------------------------1.00-----------------------------------------------------------------------------------
........................ACGCGGACTCTGTGTGC........................................................................................................................................1711.001.00--------------------------------------------------------------------------------------------------------------------------1.00-----------------------
..........................................................................................................CCCACCGCTCCCCATCCACAGG.................................................2211.0031.00--------1.00-----------------------------------------------------------------------------------------------------------------------------------------
...................................................TGAGTGTGGGGCTGGGGGTGGCGTC.....................................................................................................2511.001.00------------------------------------1.00-------------------------------------------------------------------------------------------------------------
................................................................................................................................ACCGCCGTCCCTCAGT.................................1611.001.00---------------------------------------------------------------------------------------------------------------------------------------------1.00----
...................................GTGTGCAAGGCCTCGAACC...........................................................................................................................191.000.00-----------------------1.00--------------------------------------------------------------------------------------------------------------------------
...........................................................................................................CCACCGCTCCCCATCCACAGTTTT..............................................2411.009.00--------------------------------------------------------------------------1.00-----------------------------------------------------------------------
...........................................................................................................................................TCAGTATACCTGCCGACCCGAGAGT.............2511.001.00----------------------------------------------------------------------------------------------------------------------------------1.00---------------
...........................................................................................................CCACCGCTCCCCATCCACAGCT................................................2211.009.001.00-------------------------------------------------------------------------------------------------------------------------------------------------
..................................................GTGAGTGTGGGGCTGGGGGTGT.........................................................................................................2231.000.67----------------------------------------------------------------------------------------------------------------------------------------1.00---------
................................................................................................................................................ATACCTGCCGACCCGAGAGT.............2011.001.00----------------------------------------------------------------------------------------------------------------------------------------------1.00---
........................................................GTGGGGCTGGGGGTGGCGTCA....................................................................................................2111.001.00-------------------------------------------------------------------------------------------------------------------------------1.00------------------
..........................................................................................................CCCACCGCTCCCCATCCACAGTAT...............................................2411.0031.00-----------------------------------------------------------------------------------1.00--------------------------------------------------------------
..................................................GTGAGTGTGGGGCTGGGGGTGGCGGC.....................................................................................................2611.002.00-----------1.00--------------------------------------------------------------------------------------------------------------------------------------
...........................CGGACTCTGTGTGCAAGGCCTCGAACC...........................................................................................................................271.000.00-------------------------------------------------------------------------------------------------1.00------------------------------------------------
...................................................................................................................................................CCTGCCGACCCGAGAGTACCCGTCAGT...271.000.00--------------------------------------------------------------------------1.00-----------------------------------------------------------------------
..............................................................................TGTCCTGAGGATGAGGGTTG...............................................................................2011.001.00--------------------------------------------------------------------------------------------------1.00-----------------------------------------------
..........................................................................................................CCCACCGCTCCCCATCCACAGCT................................................2311.0031.00-1.00------------------------------------------------------------------------------------------------------------------------------------------------
...................................................................................TGAGGATGAGGGTTGCCAGCTAA.......................................................................2311.001.00--------------------------------------------------------------------------------------1.00-----------------------------------------------------------
..........................................................................................................CCCACCGCTCCCCATCCCCA...................................................201.000.00---1.00----------------------------------------------------------------------------------------------------------------------------------------------
.......................................................................................................TAACCCACCGCTCCCCATCCACACT.................................................2511.003.00-1.00------------------------------------------------------------------------------------------------------------------------------------------------
.........................................................................................................ACCCACCGCTCCCCATCCACAGT.................................................231.000.00--------------------------------------1.00-----------------------------------------------------------------------------------------------------------
..AAGAGCAACTTCAGCAGGTTCC.........................................................................................................................................................2211.001.00--------------------1.00-----------------------------------------------------------------------------------------------------------------------------
...............GCAGGTTCCACGCGGACTCT..............................................................................................................................................2011.001.00-------------------------------------------------------------------1.00------------------------------------------------------------------------------
........................ACGCGGACTCTGTGTGCAAGGCC..................................................................................................................................2311.001.00--------------------------------------------------------------------------------------------------------------------1.00-----------------------------
....................................................................GTGGCGTCACTGTCCTGAGGATGAG....................................................................................2511.001.00-----------------------------------------------------------------------------------------------------------------------------1.00--------------------
...................GTTCCACGCGGACTCTGTGT..........................................................................................................................................2011.001.00---------------------------------------------------------------------------------1.00----------------------------------------------------------------
...........................................................................................................CCACCGCTCCCCATCCACCGT.................................................211.000.00-----------------------------------------------------1.00--------------------------------------------------------------------------------------------
..................................................GTGAGTGTGGGGCTGGGGTGTA.........................................................................................................221.000.00----------------------------------------------------------------------------1.00---------------------------------------------------------------------
.................................................................................................................................................TACCTGCCGACCCGAGAGTACCCGTC......2611.001.00-------------------------------------------------------------------------------1.00------------------------------------------------------------------
......GCAACTTCAGCAGGTTCCACGCGGACTCT..............................................................................................................................................2911.001.00-----------------1.00--------------------------------------------------------------------------------------------------------------------------------
............................................................................................................CACCGCTCCCCATCCACAGTAA...............................................221.000.00------------------------------------------------------------------1.00-------------------------------------------------------------------------------
....................TTCCACGCGGACTCTGTGTGCAAGGTA..................................................................................................................................271.000.00-----------------------------------------------------------------------------------------------------------1.00--------------------------------------
..........CTTCAGCAGGTTCCAGAGC....................................................................................................................................................191.000.00-----------------------------------------------------------------------------------------------------------------------------------1.00--------------
...........................................................................................................CCACCGCTCCCCATCCACA...................................................1911.001.001.00-------------------------------------------------------------------------------------------------------------------------------------------------
...................................................................................TGAGGATGAGGGTTGTA.............................................................................171.000.00-------------------------------------------------------------------------1.00------------------------------------------------------------------------
..........................................................................................................CCCACCGCTCCCCATCCACAGTTA...............................................2411.0031.00-----1.00--------------------------------------------------------------------------------------------------------------------------------------------
..................................................GTGAGTGTGGGGCTGGGGGTGGC........................................................................................................2311.001.00------------------------------------------------------------------------------------------------------------1.00-------------------------------------
..........................................................................................................CCCACCGCTCCCCATCCACAGAAA...............................................241.000.00-----------------------------------------1.00--------------------------------------------------------------------------------------------------------
...........................................................................................................................................................CCCGAGAGTACCCGTCAGA...1911.001.00---------------------------------1.00----------------------------------------------------------------------------------------------------------------
..........................................................................................................CCCACCGCTCCCCATCCACAGAAGT..............................................251.000.00-----------------------------------------------------------------------------------------------1.00--------------------------------------------------
....................TTCCACGCGGACTCTGTGTGCAAGGCCTC................................................................................................................................2911.001.00--------------------------------------------------------------------------------------------1.00-----------------------------------------------------
...................................................................................TGAGGATGAGGGTTGGGAA...........................................................................191.000.00----------------------------------------------------------------------1.00---------------------------------------------------------------------------
.............................................................................................................ACCGCTCCCCATCCACAGACCC..............................................221.000.00--------------------------------------------------1.00-----------------------------------------------------------------------------------------------
.........ACTTCAGCAGGTTCCACGCGGACTCTGT............................................................................................................................................2811.001.00-------------------------------1.00------------------------------------------------------------------------------------------------------------------
.......................................................................................................TAACCCACCGCTCCCCATCCAC....................................................2211.001.00-1.00------------------------------------------------------------------------------------------------------------------------------------------------
...........................................................................................................CCACCGCTCCCCATCCACATA.................................................2111.001.00-------------------------------------------------1.00------------------------------------------------------------------------------------------------
..................................................GTGAGTGTGGGGCTGGAT.............................................................................................................181.000.00-------------------------------------1.00------------------------------------------------------------------------------------------------------------
..................................................GTGAGTGTGGGGCTGGGGGTC..........................................................................................................2131.002.00---------------------------------------------------------------------------------------------------------------1.00----------------------------------
...................GTTCCACGCGGACTCTGTGTTCA.......................................................................................................................................2311.001.00------------------------------------------------------------------------1.00-------------------------------------------------------------------------
..........................................................................................................CCCACCGCTCCCCATCCAC....................................................1911.001.00-----------------1.00--------------------------------------------------------------------------------------------------------------------------------
.......................................................................................................TAACCCACCGCTCCCCATCC......................................................2011.001.00-----------------1.00--------------------------------------------------------------------------------------------------------------------------------
..................................................GTGAGTGTGGGGCTGGGGGTG..........................................................................................................2130.670.67------------------------0.33----------------------------------------------------------------------------------------------------------------------0.33--
..................................................GTGAGTGTGGGGCTGGGGGTTAT........................................................................................................2330.332.00-0.33------------------------------------------------------------------------------------------------------------------------------------------------
..................................................GTGAGTGTGGGGCTGGGGGTGG.........................................................................................................2230.330.33-----------------------------------------------------------------------------------------------------------------------------------------------0.33--
..................................................GTGAGTGTGGGGCTGGGGG............................................................................................................1930.330.33----------------0.33---------------------------------------------------------------------------------------------------------------------------------
..............................ACTCTGTGTGCAAGGC...................................................................................................................................1660.170.17------------------------------------------------------------------------------------------------------------------------------------------------0.17-
..................................................GTGAGTGTGGGGCTGGG..............................................................................................................1790.110.11-------------------------------------------------------------------------------------------------------------------------------------------------0.11

Antisense strand
ACAAGAGCAACTTCAGCAGGTTCCACGCGGACTCTGTGTGCAAGGCCTCGGTGAGTGTGGGGCTGGGGGTGGCGTCACTGTCCTGAGGATGAGGGTTGCCAGCTAACCCACCGCTCCCCATCCACAGAACCGCCGTCCCTCAGTATACCTGCCGACCCGAGAGTACCCGTCAGAACA
.......................................................((((((...((((((((((((.((......)))))).((((((.....)))))).))))))))..))))))...................................................
..................................................51..........................................................................127................................................
SizePerfect hitTotal NormPerfect NormSRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR306530(GSM750573)
19-24nt. (ago2 brain)		mjLiverKO1()
Liver Data. (Zcchc11 liver)		mjTestesWT1()
Testes Data. (testes)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		mjTestesWT2()
Testes Data. (testes)		mjTestesWT3()
Testes Data. (testes)		SRR306529(GSM750572)
19-24nt. (ago2 brain)		SRR685339(GSM1079783)
Small RNAs (15-50 nts in length) from immorta. (cell line)		SRR306531(GSM750574)
19-24nt. (ago2 brain)		SRR402760(SRX117943)
source: ES E14 male cells. (ESC)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		mjTestesWT4()
Testes Data. (testes)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		SRR023852(GSM307161)
ZHBT-c424hsmallrna_rep1. (cell line)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR685340(GSM1079784)
Small RNAs (15-50 nts in length) from immorta. (dicer cell line)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR059772(GSM562834)
CD4_Drosha. (spleen)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR059770(GSM562832)
Treg_Dicer. (spleen)		mjTestesKO6()
Testes Data. (Zcchc11 testes)		SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)		SRR306536(GSM750579)
19-24nt. (ago2 brain)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR038744(GSM527279)
small RNA-Seq. (brain)		GSM510444(GSM510444)
brain_rep5. (brain)		mjTestesKO5()
Testes Data. (Zcchc11 testes)		SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		SRR037929(GSM510467)
e7p5_rep3. (embryo)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR306537(GSM750580)
19-24nt. (ago2 brain)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR306539(GSM750582)
19-24nt. (ago2 brain)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		SRR029123(GSM416611)
NIH3T3. (cell line)		SRR039610(GSM527274)
small RNA-Seq. (brain)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		SRR206940(GSM723281)
other. (brain)		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR116846(GSM678422)
Small RNA deep sequencing from mouse epididym. (epididymis)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		SRR206942(GSM723283)
other. (brain)		SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)		GSM179088(GSM179088)
Developmentally regulated piRNA clusters implicate MILI in transposon control. (piwi testes)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		RuiDGCR8KO(Rui)
DGCR8-dependent microRNA biogenesis is essent. (dgcr8 skin)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)		SRR042445(GSM539837)
mouse immature B cells [09-002]. (b cell)		SRR037925(GSM510463)
e9p5_rep3. (embryo)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR306528(GSM750571)
19-24nt. (ago2 brain)		GSM475281(GSM475281)
total RNA. (testes)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)		SRR037906(GSM510442)
brain_rep3. (brain)		SRR059775(GSM562837)
MEF_Drosha. (MEF)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		GSM510454(GSM510454)
newborn_rep10. (total RNA)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		SRR037920(GSM510458)
e12p5_rep2. (embryo)		SRR037905(GSM510441)
brain_rep2. (brain)		SRR023850(GSM307159)
ZHBT-c40hsmallrna_rep1. (cell line)		GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)		SRR525240(SRA056111/SRX170316)
Mus musculus domesticus miRNA sequencing. (ago1 Blood)		SRR553582(SRX182788)
source: Brain. (Brain)		mjLiverKO3()
Liver Data. (Zcchc11 liver)		SRR038741(GSM527276)
small RNA-Seq. (brain)		SRR553584(SRX182790)
source: Heart. (Heart)		SRR059765(GSM562827)
DN3_control. (thymus)		SRR038743(GSM527278)
small RNA-Seq. (dicer brain)		SRR059776(GSM562838)
MEF_Dicer. (MEF)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR037902(GSM510438)
testes_rep3. (testes)		SRR073954(GSM629280)
total RNA. (blood)		SRR206941(GSM723282)
other. (brain)		SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		RuiDGCR8WT(Rui)
DGCR8-dependent microRNA biogenesis is essent. (skin)		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)		SRR042475(GSM539867)
mouse embryonic fibroblast cells [09-002]. (fibroblast)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)		SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)		SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR042484(GSM539876)
mouse salivary gland tissue [09-002]. (salivary gland)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)		SRR346415(SRX098256)
source: Testis. (Testes)		SRR206939(GSM723280)
other. (brain)		SRR042462(GSM539854)
mouse macrophages [09-002]. (bone marrow)		SRR346414(SRX098255)
Global profiling of miRNA and the hairpin pre. (Spleen)		Ago2IP517(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		SRR059766(GSM562828)
DN3_Drosha. (thymus)		SRR042467(GSM539859)
mouse T cells activated in vitro with Concanavalin A [09-002]. (spleen)		GSM510452(GSM510452)
newborn_rep8. (total RNA)		GSM475280(GSM475280)
Mili-IP. (mili testes)		SRR037901(GSM510437)
testes_rep2. (testes)		SRR306527(GSM750570)
19-24nt. (ago2 brain)		SRR069834(GSM304914)
Analysis of small RNAs in murine neutrophils cultured in vitro by Solexa/Illumina genome analyzer. (blood)		SRR038740(GSM527275)
small RNA-Seq. (dicer brain)		SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)		SRR042457(GSM539849)
mouse mast cells [09-002]. (bone marrow)		GSM510456(GSM510456)
newborn_rep12. (total RNA)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		GSM640579(GSM640579)
small RNA in the liver with paternal Low pro. (liver)		Ago2IP504(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		GSM314553(GSM314553)
ESC dcr (Illumina). (ESC)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR042455(GSM539847)
mouse plasma cells [09-002]. (blood)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)
...................................................................................................................................................CCTGCCGACCCGAGAGTACCCGTCA..... 2516.006.00---------5.00--1.00-------------------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................TACCTGCCGACCCGAGAGTACCCGTCA..... 2712.002.00------------2.00-------------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................GCCGTCCCTCAGTATACCTGCCGAA..................... 252.000.00------------------------------------------2.00-------------------------------------------------------------------------------------------------------
......................................................................................................................................................GCCGACCCGAGAGTACCCGTCAGAACA 2712.002.00----------------------------------2.00---------------------------------------------------------------------------------------------------------------
......................................................................................................................................................GCCGACCCGAGAGTACCCGTCAGAA.. 2511.001.00----------------------------------1.00---------------------------------------------------------------------------------------------------------------
................CAGGTTCCACGCGG................................................................................................................................................... 1411.001.00---------------------------------------------------------------1.00----------------------------------------------------------------------------------
.....................................................................................................................................................TGCCGACCCGAGAGTACCCGTCAGA... 2511.001.00-----------1.00--------------------------------------------------------------------------------------------------------------------------------------
...........................................................................................................CCACCGCTCCCCATCCCGCT.................................................. 201.000.00-------------------------------------------------------------------------------------------------------------------------------------------1.00------
...................................................................................................................................GCCGTCCCTCAGTATACC............................ 1811.001.00----------------------------1.00---------------------------------------------------------------------------------------------------------------------
......................................................................................................CTAACCCACCGCTCCGGGG........................................................ 191.000.00----------------------------------------------------------------1.00---------------------------------------------------------------------------------
................................................................................................................................ACCGCCGTCCCTCAG.................................. 1511.001.00---------------------------------------------------------------1.00----------------------------------------------------------------------------------
.................................................................................................................................CCGCCGTCCCTCAGTGAGT............................. 191.000.00---------------------------------1.00----------------------------------------------------------------------------------------------------------------
......................................................................................................CTAACCCACCGCTCCTCGG........................................................ 191.000.00----------------------------------------------------------------1.00---------------------------------------------------------------------------------
....................................TGTGCAAGGCCTCGGAG............................................................................................................................ 171.000.00---------------------------------------------------------------------------------------------------1.00----------------------------------------------
.........................................................................................................................................CCTCAGTATACCTGCCGACCCGAGA............... 2511.001.00------------------------------------------1.00-------------------------------------------------------------------------------------------------------
..............................................................................TGTCCTGAGGATGAGAAC................................................................................. 181.000.00-------------------------------------------------------------------------------------------------------------------1.00------------------------------
.................................................................................................................................CCGCCGTCCCTCA................................... 1350.200.20---------------------------------------------------------------0.20----------------------------------------------------------------------------------