ID: uc009juy.9
GENE: Itgal(10)
chr7:134450186-134450377+


(6)
B-CELL
(8)
BRAIN
(3)
CELL-LINE
(2)
DCR.mut
(6)
EMBRYO
(5)
ESC
(4)
FIBROBLAST
(4)
HEART
(2)
KIDNEY
(12)
LIVER
(3)
LYMPH
(8)
OTHER
(4)
OTHER.mut
(2)
PIWI.ip
(9)
SPLEEN
(9)
TESTES
(3)
THYMUS

Sense strand
CCTTTAACATGGAACTCTCCTCCAGCGGGATCAGCGCAGACCTCAGCAAGGTGCACAGGAGGAGCTGAGGGGTGCTGAGGGATCTAACTGACTCAGCTGGCTCGGGATAGCACTCACCCTAGTCCTCTCCTTCCCTGAGCAGGGCCATGCAGTTGTGGGAGCTGTTGGGGCTAAGGATTGGGCCGGGGGCTT
...................................................(((.((((.((((..((((((.((((((............))))))..(((.(((..........))).))))))))))))))))).)))...................................................
..................................................51.........................................................................................142................................................
SizePerfect hitTotal NormPerfect NormSRR059769(GSM562831)
Treg_Drosha. (spleen)
SRR059770(GSM562832)
Treg_Dicer. (spleen)
SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)
SRR059766(GSM562828)
DN3_Drosha. (thymus)
SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)
SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)
SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)
SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)
SRR059772(GSM562834)
CD4_Drosha. (spleen)
mjLiverWT1()
Liver Data. (liver)
GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)
SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)
SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)
SRR059771(GSM562833)
CD4_control. (spleen)
SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)
SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)
SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)
SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)
SRR037925(GSM510463)
e9p5_rep3. (embryo)
SRR059765(GSM562827)
DN3_control. (thymus)
SRR059768(GSM562830)
Treg_control. (spleen)
mjTestesWT1()
Testes Data. (testes)
SRR069834(GSM304914)
Analysis of small RNAs in murine neutrophils cultured in vitro by Solexa/Illumina genome analyzer. (blood)
SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)
SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)
SRR394084(GSM855970)
background strain: C57BL6/SV129cell type: KRa. (dicer cell line)
SRR042451(GSM539843)
mouse B cells activated in vitro with LPS/aIgD-Dextran [09-002]. (b cell)
SRR042467(GSM539859)
mouse T cells activated in vitro with Concanavalin A [09-002]. (spleen)
SRR042473(GSM539865)
mouse nTreg cells [09-002]. (lymph)
SRR685340(GSM1079784)
Small RNAs (15-50 nts in length) from immorta. (dicer cell line)
SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)
mjLiverWT2()
Liver Data. (liver)
SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)
SRR402760(SRX117943)
source: ES E14 male cells. (ESC)
SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)
SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)
GSM640580(GSM640580)
small RNA in the liver with paternal Low pro. (liver)
SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)
GSM640579(GSM640579)
small RNA in the liver with paternal Low pro. (liver)
SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)
mjLiverKO1()
Liver Data. (Zcchc11 liver)
GSM509276(GSM509276)
small RNA cloning by length. (testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR363956(GSM822758)
P14-WTSmall RNA Miwi IPread_length: 36. (testes)
SRR073955(GSM629281)
total RNA. (blood)
SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)
GSM361402(GSM361402)
CGNP_P6_p53--_Ink4c--_rep5. (brain)
SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)
SRR037924(GSM510462)
e9p5_rep2. (embryo)
SRR042456(GSM539848)
mouse hematopoetic progenitor cells [09-002]. (bone marrow)
SRR077864(GSM637801)
18-30 nt small RNAs. (liver)
SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)
SRR553584(SRX182790)
source: Heart. (Heart)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
GSM361395(GSM361395)
CGNP_P6_wt_rep2. (brain)
SRR042484(GSM539876)
mouse salivary gland tissue [09-002]. (salivary gland)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
SRR059773(GSM562835)
CD4_Dicer. (spleen)
GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)
SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)
SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)
SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)
GSM640578(GSM640578)
small RNA in the liver with paternal control. (liver)
SRR346415(SRX098256)
source: Testis. (Testes)
SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)
GSM640581(GSM640581)
small RNA in the liver with paternal control. (liver)
SRR402762(SRX117945)
source: ES E14 male cells. (ESC)
SRR553585(SRX182791)
source: Kidney. (Kidney)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR077865(GSM637802)
18-30 nt small RNAs. (liver)
SRR095855BC7(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR059767(GSM562829)
DN3_Dicer. (thymus)
SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)
mjLiverKO3()
Liver Data. (Zcchc11 liver)
SRR095855BC2(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)
SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)
SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)
SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)
SRR095855BC5(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)
......................................................................................................................CTAGTCCTCTCCTTCCCTGAGCAGT.................................................25146.0011.0035.005.004.001.00--------------1.00---------------------------------------------------------------
.........................................................................................................................GTCCTCTCCTTCCCTGAGCAGT.................................................22137.006.0026.003.001.001.00--1.00------1.001.00---1.00---2.00-----------------------------------------------------------
.......................................................................................................................TAGTCCTCTCCTTCCCTGAGCAGT.................................................24133.0012.0023.004.00-1.001.00-2.00------------------------------1.00------------1.00-------------------------------
........................................................................................................................AGTCCTCTCCTTCCCTGAGCAGT.................................................23127.005.0019.003.00-2.00----1.00----2.00--------------------------------------------------------------------
..........................................................................................................................TCCTCTCCTTCCCTGAGCAGT.................................................21125.008.0018.006.00-1.00------------------------------------------------------------------------------
.......................................................................................................................TAGTCCTCTCCTTCCCTGAGCAG..................................................23112.0012.007.00-1.00---1.001.00---1.00--1.00-------------------------------------------------------------------
......................................................................................................................CTAGTCCTCTCCTTCCCTGAGCAG..................................................24111.0011.005.00-1.003.001.00--------------1.00--------------------------------------------------------------
..........................................................................................................................TCCTCTCCTTCCCTGAGCAG..................................................2018.008.006.001.00------------------1.00-------------------------------------------------------------
..........................................................................................................................TCCTCTCCTTCCCTGAGCAGA.................................................2117.008.004.00---1.00-------1.00-------1.00-------------------------------------------------------------
......................................................................................................................CTAGTCCTCTCCTTCCCTGAGCAGA.................................................2516.0011.001.00-2.00-2.00------1.00----------------------------------------------------------------------
.........................................................................................................................GTCCTCTCCTTCCCTGAGCAG..................................................2116.006.003.00---1.00------1.00----------------1.00-----------------------------------------------------
......................................................................................................................CTAGTCCTCTCCTTCCCTGAG.....................................................2116.006.002.003.00----1.00---------------------------------------------------------------------------
......................................................................................................................CTAGTCCTCTCCTTCCCTGAGCA...................................................2316.006.005.00----------------------1.00----------------------------------------------------------
........................................................................................................................AGTCCTCTCCTTCCCTGAGCAG..................................................2215.005.003.001.00-1.00------------------------------------------------------------------------------
......................................................................................................................CTAGTCCTCTCCTTCCCTGAGC....................................................2215.005.005.00---------------------------------------------------------------------------------
...........................................................................................................................CCTCTCCTTCCCTGAGCAGT.................................................204.000.00--------4.00-------------------------------------------------------------------------
..........................................................................................................................TCCTCTCCTTCCCTGAGCAGTT................................................2214.008.004.00---------------------------------------------------------------------------------
.........................................................................................................................GTCCTCTCCTTCCCTGAGCAGA.................................................2214.006.002.00----1.00---------------------1.00------------------------------------------------------
......................................................................................................................CTAGTCCTCTCCTTCCCTGAGT....................................................2214.006.004.00---------------------------------------------------------------------------------
..................................................GTGCACAGGAGGAGCTGAGGGGTGCT....................................................................................................................2613.003.001.00-------------1.00---------1.00---------------------------------------------------------
.......................................................................................................................TAGTCCTCTCCTTCCCTGAGCAGA.................................................2413.0012.00-1.00---2.00----------------------------------------------------------------------------
........................................................................................................................AGTCCTCTCCTTCCCTGAGCA...................................................2113.003.002.00-------1.00-------------------------------------------------------------------------
..................................................................................................................................................................TGTTGGGGCTAAGGATTGGG..........2012.002.00---------------------2.00------------------------------------------------------------
...............TCTCCTCCAGCGGGATCAAA.............................................................................................................................................................202.000.00-----------------------------------------------1.00-------1.00--------------------------
......................................................................................................................CTAGTCCTCTCCTTCCCTGAGCAT..................................................2412.006.002.00---------------------------------------------------------------------------------
......................................................................................................................CTAGTCCTCTCCTTCCCTGAGCAGTTT...............................................2712.0011.002.00---------------------------------------------------------------------------------
....................................................................................................................................................GCAGTTGTGGGAGCTGTT..........................1812.002.00---------------2.00------------------------------------------------------------------
.......................................................................................................................TAGTCCTCTCCTTCCCTGAGCA...................................................2212.002.002.00---------------------------------------------------------------------------------
.......................................................................................................................TAGTCCTCTCCTTCCCTGAGC....................................................2112.002.001.001.00--------------------------------------------------------------------------------
.....AACATGGAACTCTCCTCCAGCGGGA..................................................................................................................................................................2512.002.00-----2.00----------------------------------------------------------------------------
...........................................................................................................................CCTCTCCTTCCCTGAGCAGA.................................................202.000.00-------------2.00--------------------------------------------------------------------
.......................................................................................................................TAGTCCTCTCCTTCCCTGAGCAGTT................................................2512.0012.002.00---------------------------------------------------------------------------------
.......................................................................................................................TAGTCCTCTCCTTCCCTGAGCAA..................................................2312.002.001.001.00--------------------------------------------------------------------------------
.......................................................................................................................TAGTCCTCTCCTTCCCTGATCAG..................................................232.000.00--2.00-------------------------------------------------------------------------------
..........................................................................................................................TCCTCTCCTTCCCTGAGCAGTTT...............................................2312.008.002.00---------------------------------------------------------------------------------
............................................................................................................................................AGGGCCATGCAGTTGTTCT.................................191.000.00-----------------1.00----------------------------------------------------------------
............................................................................................................................................................................AAGGATTGGGCCGGGGGCT.1911.001.00----------1.00-----------------------------------------------------------------------
.....................................................CACAGGAGGAGCTGAGGGGTG......................................................................................................................2111.001.00-----1.00----------------------------------------------------------------------------
..................................................GTGCACAGGAGGAGCTGAGGGGTTT.....................................................................................................................2511.001.001.00---------------------------------------------------------------------------------
......................................................................................................................................................................GGGGCTAAGGATTGGCT.........171.000.00----------------------------------------------1.00-----------------------------------
.........................................................................................................................GTCCTCTCCTTCCCTGAGCA...................................................2011.001.00-------------------1.00--------------------------------------------------------------
..........GGAACTCTCCTCCAGCGG....................................................................................................................................................................1811.001.00----------1.00-----------------------------------------------------------------------
......................................................................................................................CTAGTCCTCTCCTTCCCTTAG.....................................................211.000.001.00---------------------------------------------------------------------------------
.......................................................................................................................TAGTCCTCTCCTTCCCTGAGCAT..................................................2311.002.00-1.00--------------------------------------------------------------------------------
...........................................................................................................................................................................TAAGGATTGGGCCGGGT....171.000.00----------------------------------------1.00-----------------------------------------
..................................................GTGCACAGGAGGAGCTGAGGGAAA......................................................................................................................2411.001.00-----------1.00----------------------------------------------------------------------
...................................................................................................................................................TGCAGTTGTGGGAGCTGTTGGGGCAA...................261.000.00-------1.00--------------------------------------------------------------------------
..................................................GTGCACAGGAGGAGCTGTT...........................................................................................................................191.000.00-1.00--------------------------------------------------------------------------------
..................................................GTGCACAGGAGGAGCTGAGGGGTGCTG...................................................................................................................2711.001.00-------1.00--------------------------------------------------------------------------
........................................................................................................................................................TTGTGGGAGCTGTTGGGGC.....................1911.001.00-----1.00----------------------------------------------------------------------------
...........................................................................TGAGGGATCTAACTGACTCAGCTGGCTCGGGATAG..................................................................................3511.001.00----------1.00-----------------------------------------------------------------------
.........................................................................................................................GTCCTCTCCTTCCCTGATCA...................................................201.000.00-1.00--------------------------------------------------------------------------------
..................................................GTGCACAGGAGGAGCTGAGGGG........................................................................................................................2211.001.00------1.00---------------------------------------------------------------------------
......ACATGGAACTCTCCTCCAGCGGGATCAGCG............................................................................................................................................................3011.001.00--------------1.00-------------------------------------------------------------------
........................................................................................................................AGTCCTCTCCTTCCCTGAGCAGA.................................................2311.005.00------------------------1.00---------------------------------------------------------
...........................................................................................................................CCTCTCCTTCCCTGAGCAGTT................................................211.000.00--------1.00-------------------------------------------------------------------------
..................................................GTGCACAGGAGGAGCTGAGGGGT.......................................................................................................................2311.001.001.00---------------------------------------------------------------------------------
.....AACATGGAACTCTCCTCCAGCGGGATCAGCGT...........................................................................................................................................................321.000.00--------------------------------------------1.00-------------------------------------
..................................................GTGCACAGGAGGAGCTGAAA..........................................................................................................................2011.001.00-----------1.00----------------------------------------------------------------------
......................................................................................................................CTAGTCCTCTCCTTCCCTGAGCAGTT................................................2611.0011.00-1.00--------------------------------------------------------------------------------
.........................................................................................................................GTCCTCTCCTTCCCTGAGCATT.................................................2211.001.001.00---------------------------------------------------------------------------------
..............................................................................................................................................................................GGATTGGGCCGGGGGCTT1811.001.00-------1.00--------------------------------------------------------------------------
..................................................GTGCACAGGAGGAGCTGA............................................................................................................................1811.001.00---------------------------1.00------------------------------------------------------
....................................................GCACAGGAGGAGCTGAGGGGTGCT....................................................................................................................2411.001.00--------------1.00-------------------------------------------------------------------
......................................................................................................................CTAGTCCTCTCCTTCCCTGAGTTT..................................................2411.006.001.00---------------------------------------------------------------------------------
........ATGGAACTCTCCTCCAGCGGGATCAGC.............................................................................................................................................................2711.001.00----------1.00-----------------------------------------------------------------------
.........................................................................................................................GTCCTCTCCTTCCCTGAGCAGC.................................................2211.006.00--1.00-------------------------------------------------------------------------------
..................................................GTGCACAGGAGGAGCTGAGGAAA.......................................................................................................................231.000.00------1.00---------------------------------------------------------------------------
...................................................................................................................................................................GTTGGGGCTAAGGATTGGGCCGGGGG...2611.001.00--------------------------1.00-------------------------------------------------------
.....................................................................................................................CCTAGTCCTCTCCTTCCCTGAGC....................................................2311.001.001.00---------------------------------------------------------------------------------
............................................................GGAGCTGAGGGGTGCTGAGGGATC............................................................................................................2411.001.001.00---------------------------------------------------------------------------------
.......................................................................................................................................................GTTGTGGGAGCTGTTGGGGCTAAGG................2511.001.00---------------1.00------------------------------------------------------------------
......................................................................................................................CTAGTCCTCTCCTTCCCTGT......................................................201.000.001.00---------------------------------------------------------------------------------
..........................................................................................................................TCCTCTCCTTCCCTGAGCAGTA................................................2211.008.00--1.00-------------------------------------------------------------------------------
......................................................................................................................................................................GGGGCTAAGGATTGGGCCGGGGGCTT2611.001.00----------------------------------------------------------1.00-----------------------
..................................................GTGCACAGGAGGAGCTGAGGAGA.......................................................................................................................231.000.00--1.00-------------------------------------------------------------------------------
..................................................GTGCACAGGAGGAGCTGAGGT.........................................................................................................................211.000.00-1.00--------------------------------------------------------------------------------
..................................................GTGCACAGGAGGAGCTGAGGGGTGCTGAGG................................................................................................................3011.001.00----------1.00-----------------------------------------------------------------------
............................................................................................TCAGCTGGCTCGGGATAGCACT..............................................................................2211.001.00--------------------------------------------------------1.00-------------------------
......................................................................................................................CTAGTCCTCTCCTTCCCTGAGCATT.................................................2511.006.00-1.00--------------------------------------------------------------------------------
..................................................GTGCACAGGAGGAGCTGAGGGGTGC.....................................................................................................................2511.001.00------------------------------------------1.00---------------------------------------
.......................................................................................................................TAGTCCTCTCCTTCCCTGAGCAGAT................................................2511.0012.00--1.00-------------------------------------------------------------------------------
....TAACATGGAACTCTCCTCCAGCGGGAT.................................................................................................................................................................2711.001.00------------------------------------------------------1.00---------------------------
...................................................................................................................................................TGCAGTTGTGGGAGCTGTTGGGGCTAT..................271.000.00------1.00---------------------------------------------------------------------------
...................................................................................................................................................................GTTGGGGCTAAGGATTGGGCCGGGGGCT.2811.001.00--------------------------1.00-------------------------------------------------------
............................................................................................................................................................GGGAGCTGTTGGGGCTAA..................1811.001.00-------1.00--------------------------------------------------------------------------
..................................................GTGCACAGGAGGAGCTGAGA..........................................................................................................................201.000.00----1.00-----------------------------------------------------------------------------
..................................................GTGCACAGGAGGAGCTGAGGGGTGCTGAGGGATCTAACTGACTCAGCTGGCTCGGGATAGCACTCACCCTAGTCCTCTCCTTCCCTGAGCAGT.................................................931.000.00----------------------------------------------------1.00-----------------------------
....TAACATGGAACTCTCCTCCAGCGGGATC................................................................................................................................................................2811.001.00-------------------------------------------1.00--------------------------------------
........................................................AGGAGGAGCTGAGGGGTGCT....................................................................................................................2011.001.00------------------------------------------------1.00---------------------------------
.........................................................................................................................GTCCTCTCCTTCCCTGAGCTAT.................................................221.000.001.00---------------------------------------------------------------------------------
.......................................................................................CTGACTCAGCTGGCTCGGGATAGCAC...............................................................................2611.001.00----1.00-----------------------------------------------------------------------------
.......................................................................................................................TAGTCCTCTCCTTCCCTGAGCAGTTT...............................................2611.0012.001.00---------------------------------------------------------------------------------
........................GCGGGATCAGCGCAGACT......................................................................................................................................................181.000.00-----1.00----------------------------------------------------------------------------
..................................................GTGCACAGGAGGAGCTGAGGGGTGCTGTTT................................................................................................................3011.001.001.00---------------------------------------------------------------------------------
.........................................................GGAGGAGCTGAGGGGTGCGAGG.................................................................................................................221.000.00----1.00-----------------------------------------------------------------------------
....................................................................................................................................................................TTGGGGCTAAGGATTGGGCCG.......2111.001.00-----------1.00----------------------------------------------------------------------
.......................................................................................................................................................GTTGTGGGAGCTGTTGGGGCTAA..................2311.001.00-------1.00--------------------------------------------------------------------------
........................................................................................................................AGTCCTCTCCTTCCCTGAGCAGTT................................................2411.005.001.00---------------------------------------------------------------------------------
..................................................GTGCACAGGAGGAGCTGAGAAAG.......................................................................................................................231.000.00----1.00-----------------------------------------------------------------------------
..................................................GTGCACAGGAGGAGCTGAGGG.........................................................................................................................2111.001.00----------------------------1.00-----------------------------------------------------
.......................................................................................................................................................GTTGTGGGAGCTGTTGGGGCTACGGA...............261.000.00-------------------------------------------------1.00--------------------------------
........ATGGAACTCTCCTCCAGCGGGATCAGCGCAGACCT.....................................................................................................................................................3511.001.00----------1.00-----------------------------------------------------------------------
......ACATGGAACTCTCCTCCAGCGGGATCA...............................................................................................................................................................2711.001.00-----1.00----------------------------------------------------------------------------
....................................................................................................................................................................TTGGGGCTAAGGATTGGCTCT.......211.000.00---------------------------------------------------------1.00------------------------
..................................................GTGCACAGGAGGAGCTGAGGAAT.......................................................................................................................231.000.00----1.00-----------------------------------------------------------------------------
.......................AGCGGGATCAGCGCAGACCTCAG..................................................................................................................................................2311.001.00-------1.00--------------------------------------------------------------------------
..........................................................................................................................TCCTCTCCTTCCCTGAGCA...................................................1920.500.500.50---------------------------------------------------------------------------------
..............CTCTCCTCCAGCGGGAT.................................................................................................................................................................1720.500.50--------------------------------------------------------------------0.50-------------
..........................................................GAGGAGCTGAGGGGTGCTGA..................................................................................................................2020.500.50--0.50-------------------------------------------------------------------------------

Antisense strand
CCTTTAACATGGAACTCTCCTCCAGCGGGATCAGCGCAGACCTCAGCAAGGTGCACAGGAGGAGCTGAGGGGTGCTGAGGGATCTAACTGACTCAGCTGGCTCGGGATAGCACTCACCCTAGTCCTCTCCTTCCCTGAGCAGGGCCATGCAGTTGTGGGAGCTGTTGGGGCTAAGGATTGGGCCGGGGGCTT
...................................................(((.((((.((((..((((((.((((((............))))))..(((.(((..........))).))))))))))))))))).)))...................................................
..................................................51.........................................................................................142................................................
SizePerfect hitTotal NormPerfect NormSRR059769(GSM562831)
Treg_Drosha. (spleen)
SRR059770(GSM562832)
Treg_Dicer. (spleen)
SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)
SRR059766(GSM562828)
DN3_Drosha. (thymus)
SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)
SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)
SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)
SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)
SRR059772(GSM562834)
CD4_Drosha. (spleen)
mjLiverWT1()
Liver Data. (liver)
GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)
SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)
SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)
SRR059771(GSM562833)
CD4_control. (spleen)
SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)
SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)
SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)
SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)
SRR037925(GSM510463)
e9p5_rep3. (embryo)
SRR059765(GSM562827)
DN3_control. (thymus)
SRR059768(GSM562830)
Treg_control. (spleen)
mjTestesWT1()
Testes Data. (testes)
SRR069834(GSM304914)
Analysis of small RNAs in murine neutrophils cultured in vitro by Solexa/Illumina genome analyzer. (blood)
SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)
SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)
SRR394084(GSM855970)
background strain: C57BL6/SV129cell type: KRa. (dicer cell line)
SRR042451(GSM539843)
mouse B cells activated in vitro with LPS/aIgD-Dextran [09-002]. (b cell)
SRR042467(GSM539859)
mouse T cells activated in vitro with Concanavalin A [09-002]. (spleen)
SRR042473(GSM539865)
mouse nTreg cells [09-002]. (lymph)
SRR685340(GSM1079784)
Small RNAs (15-50 nts in length) from immorta. (dicer cell line)
SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)
mjLiverWT2()
Liver Data. (liver)
SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)
SRR402760(SRX117943)
source: ES E14 male cells. (ESC)
SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)
SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)
GSM640580(GSM640580)
small RNA in the liver with paternal Low pro. (liver)
SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)
GSM640579(GSM640579)
small RNA in the liver with paternal Low pro. (liver)
SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)
mjLiverKO1()
Liver Data. (Zcchc11 liver)
GSM509276(GSM509276)
small RNA cloning by length. (testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR363956(GSM822758)
P14-WTSmall RNA Miwi IPread_length: 36. (testes)
SRR073955(GSM629281)
total RNA. (blood)
SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)
GSM361402(GSM361402)
CGNP_P6_p53--_Ink4c--_rep5. (brain)
SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)
SRR037924(GSM510462)
e9p5_rep2. (embryo)
SRR042456(GSM539848)
mouse hematopoetic progenitor cells [09-002]. (bone marrow)
SRR077864(GSM637801)
18-30 nt small RNAs. (liver)
SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)
SRR553584(SRX182790)
source: Heart. (Heart)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
GSM361395(GSM361395)
CGNP_P6_wt_rep2. (brain)
SRR042484(GSM539876)
mouse salivary gland tissue [09-002]. (salivary gland)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
SRR059773(GSM562835)
CD4_Dicer. (spleen)
GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)
SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)
SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)
SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)
GSM640578(GSM640578)
small RNA in the liver with paternal control. (liver)
SRR346415(SRX098256)
source: Testis. (Testes)
SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)
GSM640581(GSM640581)
small RNA in the liver with paternal control. (liver)
SRR402762(SRX117945)
source: ES E14 male cells. (ESC)
SRR553585(SRX182791)
source: Kidney. (Kidney)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR077865(GSM637802)
18-30 nt small RNAs. (liver)
SRR095855BC7(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR059767(GSM562829)
DN3_Dicer. (thymus)
SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)
mjLiverKO3()
Liver Data. (Zcchc11 liver)
SRR095855BC2(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)
SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)
SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)
SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)
SRR095855BC5(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)
................CTCCTCCAGCGGGATCAGGA............................................................................................................................................................ 2013.670.000.33--0.33-----4.00--2.670.33--0.67--------------1.67-1.330.33--------------------------0.330.67--------0.33-0.33--0.33-----
...............TCTCCTCCAGCGGGATCA............................................................................................................................................................... 1814.004.00-----------------------1.00-----1.00----1.00------------------1.00----------------------------
.................TCCTCCAGCGGGATCA............................................................................................................................................................... 1633.673.67---------2.00----------------------0.67---------------------------0.33----0.33------0.33---------
...............TCTCCTCCAGCGGGATCAA.............................................................................................................................................................. 192.000.00------------1.00--------------------------------------1.00------------------------------
...............TCTCCTCCAGCGGGAT................................................................................................................................................................. 1622.002.00-------------------------2.00--------------------------------------------------------
................CTCCTCCAGCGGGATCAGA............................................................................................................................................................. 191.330.00---------0.33----------------------------0.33----------------------0.33-0.33------------------
........................................................................................................................AGTCCTCTCCTTCCCTGAGGG................................................... 211.000.00------------------1.00---------------------------------------------------------------
...............TCTCCTCCAGCGGGAAA................................................................................................................................................................ 171.000.00-----------------------------------------------------------1.00----------------------
...............TCTCCTCCAGCGGGATCAACA............................................................................................................................................................ 211.000.00----------------1.00-----------------------------------------------------------------
.........................................................................................................................GTCCTCTCCTTCCCTGCG..................................................... 181.000.00-----------------1.00----------------------------------------------------------------
................CTCCTCCAGCGGGATCGA.............................................................................................................................................................. 181.000.00----------------0.25-------------------0.25--------------------------------0.25-------0.25----
...TTAACATGGAACTCTCAG........................................................................................................................................................................... 181.000.00---------------------------------------------1.00------------------------------------
.................TCCTCCAGCGGGATCAC.............................................................................................................................................................. 171.000.00-----------------------------------------1.00----------------------------------------
................CTCCTCCAGCGGGATGGAC............................................................................................................................................................. 191.000.00------------------------------1.00---------------------------------------------------
................CTCCTCCAGCGGGATCA............................................................................................................................................................... 1731.001.00--------------------------------------0.33---------------------------0.33--------0.33------
................CTCCTCCAGCGGGATGGAA............................................................................................................................................................. 191.000.00------------------------------------1.00---------------------------------------------
...............TCTCCTCCAGCGGGATCAAAAA........................................................................................................................................................... 221.000.00----------------1.00-----------------------------------------------------------------
................CTCCTCCAGCGGGATCAGGAA........................................................................................................................................................... 211.000.00---0.33--------0.33---------------------------------------------------0.33-----------------
..................................................................................................................................TTCCCTGAGCAGGGCCTG............................................ 181.000.00-----------------1.00----------------------------------------------------------------
...............TCTCCTCCAGCGGGATCAAC............................................................................................................................................................. 201.000.00--------------------------------1.00-------------------------------------------------
...............TCTCCTCCAGCGGGAACA............................................................................................................................................................... 181.000.00-----------------------------------1.00----------------------------------------------
.................TCCTCCAGCGGGATC................................................................................................................................................................ 1550.800.80------------------------------------------------------------0.40--------0.20---------0.20--
.................TCCTCCAGCGGGATCAAA............................................................................................................................................................. 180.670.00-------------------0.33---------------0.33----------------------------------------------
................CTCCTCCAGCGGGATCAGAA............................................................................................................................................................ 200.670.00------------0.33---------------------------------------------------------0.33-----------
................CTCCTCCAGCGGGATCAGGTA........................................................................................................................................................... 210.670.00---------------0.33-------------0.33----------------------------------------------------
...............TCTCCTCCAGCGGGATCAAAA............................................................................................................................................................ 210.500.00---------------------------------------0.50------------------------------------------
...............TCTCCTCCAGCGGGATC................................................................................................................................................................ 1720.500.50---------------------------------------0.50------------------------------------------
...............TCTCCTCCAGCGGGATCA............................................................................................................................................................... 180.500.00-------------------------------------------------------------------0.50--------------
...............TCTCCTCCAGCGGGATAA............................................................................................................................................................... 180.500.00-----------------------------0.50----------------------------------------------------
...............TCTCCTCCAGCGGGATCAAA............................................................................................................................................................. 200.500.00------------0.50---------------------------------------------------------------------
.................TCCTCCAGCGGGATCCC.............................................................................................................................................................. 170.400.00------------------------------------------------------------------------------0.20-0.20-
................CTCCTCCAGCGGGATCAGGAC........................................................................................................................................................... 210.330.00---0.33------------------------------------------------------------------------------
.................TCCTCCAGCGGGATCAAAAC........................................................................................................................................................... 200.330.00--------------------------------------------------------------------------0.33-------
................CTCCTCCAGCGGGATCTTA............................................................................................................................................................. 190.250.00-------------------------------------0.25--------------------------------------------
................CTCCTCCAGCGGGATCGTGA............................................................................................................................................................ 200.250.00------------------------------0.25---------------------------------------------------
................CTCCTCCAGCGGGATCGAC............................................................................................................................................................. 190.250.00----------------------------------------------------------------0.25-----------------
................CTCCTCCAGCGGGATCGGGT............................................................................................................................................................ 200.250.00--------------------------------------0.25-------------------------------------------
................CTCCTCCAGCGGGATCGGAA............................................................................................................................................................ 200.250.00------------------------------0.25---------------------------------------------------
................CTCCTCCAGCGGGATCGAA............................................................................................................................................................. 190.250.00---------------------------------------------------------------0.25------------------
................CTCCTCCAGCGGGATCTAA............................................................................................................................................................. 190.250.00----------------0.25-----------------------------------------------------------------
................CTCCTCCAGCGGGATC................................................................................................................................................................ 1640.250.25-----------------------------------------------------------------0.25----------------
................CTCCTCCAGCGGGATCGGAC............................................................................................................................................................ 200.250.00------------------------------0.25---------------------------------------------------
.................TCCTCCAGCGGGATCAACC............................................................................................................................................................ 190.200.00--------------------------------------0.20-------------------------------------------
.................TCCTCCAGCGGGATCAC.............................................................................................................................................................. 170.200.00------------------------------------------------------------------0.20---------------
.................TCCTCCAGCGGGATCAGGG............................................................................................................................................................ 190.200.00---------------0.20------------------------------------------------------------------
..................CCTCCAGCGGGATC................................................................................................................................................................ 1470.140.14---------------------------------------------------------------------------------0.14