ID: uc009jko.10
GENE: 9030624J02Rik(10)
chr7:125918606-125918855+


(5)
AGO2.ip 		(1)
AGO3.ip 		(7)
B-CELL 		(11)
BRAIN 		(1)
DGCR8.mut 		(6)
EMBRYO 		(5)
ESC 		(1)
FIBROBLAST 		(1)
KIDNEY 		(1)
LIVER 		(3)
LYMPH 		(14)
OTHER 		(1)
OTHER.mut 		(1)
PIWI.ip 		(1)
SKIN 		(4)
SPLEEN 		(5)
TESTES 		(3)
TOTAL-RNA

Sense strand
GATAGGGATATGTATGGGGAAGCCTTACTAAATTGTACCCACAGGGAAAGTCTGGCTACACTGCCTTGGCAAGCTGAAACTTTGACCTTGATTTGTTCTTAGGCGTTTGATTCCCTCCCCTACATCTAGGATAATACGGTTTTATCATGGAAGTGAGGACAGGGAGAATGTAACTAACTCTGCACTCCTCTCTCCCACAGGGGGATTTCAGAGTGCCTGCCCCGACTAACCTGCATGATCAGAGGGATCG
........................................................................................................................................................(((.(((.((((((..((((........)))))))).)).))))))....................................................
............................................................................................................................................141........................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR206942(GSM723283)
other. (brain)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		mjTestesWT3()
Testes Data. (testes)		SRR306537(GSM750580)
19-24nt. (ago2 brain)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		SRR042452(GSM539844)
mouse B1 B cells [09-002]. (b cell)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR116846(GSM678422)
Small RNA deep sequencing from mouse epididym. (epididymis)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR042465(GSM539857)
mouse CD4+ T cells (spleen) [09-002]. (spleen)		SRR306531(GSM750574)
19-24nt. (ago2 brain)		SRR042472(GSM539864)
mouse iTreg cells [09-002]. (lymph)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)		SRR042475(GSM539867)
mouse embryonic fibroblast cells [09-002]. (fibroblast)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		GSM510452(GSM510452)
newborn_rep8. (total RNA)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR037912(GSM510449)
newborn_rep5. (total RNA)		SRR306527(GSM750570)
19-24nt. (ago2 brain)		SRR042444(GSM539836)
mouse pre B cells [09-002]. (b cell)		SRR073955(GSM629281)
total RNA. (blood)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		GSM510455(GSM510455)
newborn_rep11. (total RNA)		GSM509280(GSM509280)
small RNA cloning by length. (testes)		SRR206940(GSM723281)
other. (brain)		SRR073954(GSM629280)
total RNA. (blood)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		SRR042461(GSM539853)
mouse dendritic cells [09-002]. (bone marrow)		GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)		SRR065056(SRR065056)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR345205(SRX097266)
source: size fractionated RNA from mouse hipp. (brain)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		SRR042456(GSM539848)
mouse hematopoetic progenitor cells [09-002]. (bone marrow)		SRR042462(GSM539854)
mouse macrophages [09-002]. (bone marrow)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)		GSM640581(GSM640581)
small RNA in the liver with paternal control. (liver)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR039610(GSM527274)
small RNA-Seq. (brain)		SRR402760(SRX117943)
source: ES E14 male cells. (ESC)
.................................................................................................................................................CATGGAAGTGAGGACAGGGAG....................................................................................21121.0021.00-2.001.00-1.003.003.001.00--2.00---1.001.001.00--1.001.00--------------1.00--1.00----------1.00------------
................................................................................................................................................TCATGGAAGTGAGGACAGGGAG....................................................................................2216.006.001.001.00--2.00-------1.00---------------------------------1.00---------------
..................................................................................................................................................ATGGAAGTGAGGACAGGGAG....................................................................................2015.005.00-1.00-------1.00-----------------------1.00---1.00-------------1.00----------
...............................................................................................................................................ATCATGGAAGTGAGGACAGGGAG....................................................................................2314.004.00--3.00--------------1.00--------------------------------------------
.................................................................................................................................................CATGGAAGTGAGGACAGGG......................................................................................1913.003.00---------1.00-1.00----------------1.00---------------------------------
................................................................................................................................................TCATGGAAGTGAGGACAGGGAGAATA................................................................................263.000.00--------------------------------1.00---1.00-----1.00-------------------
.................................................................................................................................................CATGGAAGTGAGGACAGG.......................................................................................1813.003.001.00----------1.00--------------1.00-----------------------------------
.................................................................................................................................................CATGGAAGTGAGGACAGGGA.....................................................................................2013.003.002.00--1.00----------------------------------------------------------
..................................................................................................................................................................................TCTGCACTCCTCTCTCCCACAGT.................................................2312.002.00---------------------1.00----------------------1.00-----------------
..................................................................................................................................................ATGGAAGTGAGGACAGGGAGT...................................................................................2112.005.00-------1.00-----------------------------------------------1.00------
..................................................................................................................................................................................TCTGCACTCCTCTCTCCCACAG..................................................2212.002.00---1.00---------1.00------------------------------------------------
........................................................................................................................................................................................................GGGGATTTCAGAGTGTT.................................171.000.00------------1.00-------------------------------------------------
....................................ACCCACAGGGAAAGTCTGGCT.................................................................................................................................................................................................2111.001.00-----------------------1.00--------------------------------------
.........................................................................................GATTTGTTCTTAGGCGTTT..............................................................................................................................................1911.001.00------------------------------1.00-------------------------------
.................................................................................................................................................CATGGAAGTGAGGACAGGGAGT...................................................................................2211.0021.00------------------1.00-------------------------------------------
......................................................................AAGCTGAAACTTTGAGTGT.................................................................................................................................................................191.000.00------------------------------------------------1.00-------------
...................................................................................................................................................................................................CACAGGGGGATTTCAGAGTGCCT................................2311.001.00--------------------------------------------------1.00-----------
..................................................................................................................................................................................................................................TAACCTGCATGATCAGAGGGA...2111.001.00---------------------------1.00----------------------------------
...............................................................................................................................................................................................................................GACTAACCTGCATGATCAGAGGGATCG2711.001.00---1.00----------------------------------------------------------
..............................................................................................................TTCCCTCCCCTACATCTAGGATAATACGGTTTTATCATGGAAGTGAGGACAGGGAGAATGTAACTAACTCTGCACTCCTCTCTCCCACAGAG................................................921.000.00--------------------------------------------------------1.00-----
.......................................................................................................................................................................................................................................TGCATGATCAGAGGGATAAC201.000.00----------------------------------------------------1.00---------
.................................................................................................................................................CATGGAAGTGAGGACAGGGATA...................................................................................2211.003.001.00-------------------------------------------------------------
....................................................................................................................................................GGAAGTGAGGACAGGGAGAA..................................................................................2011.001.00-------------------------------------------1.00------------------
................................................................................................................................................TCATGGAAGTGAGGACAGGGA.....................................................................................2111.001.001.00-------------------------------------------------------------
.......................................................................................................................................................................................................................................TGCATGATCAGAGGGATTA191.000.00---------------------------------------------------------1.00----
..................................................................................................................................................ATGGAAGTGAGGACAGGGAGC...................................................................................2111.005.00-------------------------1.00------------------------------------
..................................................................................................................................................ATGGAAGTGAGGACAGGGAGTAA.................................................................................2311.005.00------------------------------------------------------1.00-------
..................................................................................................................................................ATGGAAGTGAGGACAGGGCT....................................................................................201.000.00---------------------------------------------1.00----------------
.......................................................CTACACTGCCTTGGCAAGCT...............................................................................................................................................................................2011.001.00---------------------------------------1.00----------------------
..................................................................TGGCAAGCTGAAACTTAAAG....................................................................................................................................................................201.000.00-------------------------------1.00------------------------------
.....................................................................................................................................................................................................................................CCTGCATGATCAGAGGGATC.2011.001.00-------1.00------------------------------------------------------
..............................................................................................................................................................................................................................CGACTAACCTGCATGATCAG........2011.001.00----------------------1.00---------------------------------------
.................................................................................................................................................CATGGAAGTGAGGACAGGGAA....................................................................................2111.003.00--------------1.00-----------------------------------------------
..................................................................................................................................................................................TCTGCACTCCTCTCTCCCACAGA.................................................2311.002.00--------1.00-----------------------------------------------------
..................................................................................................................................................ATGGAAGTGAGGACAGGTCT....................................................................................201.000.00----------------------------------------1.00---------------------
.................................................................................................................................................CATGGAAGTGAGGACAGGGAAT...................................................................................2211.003.00-1.00------------------------------------------------------------
.................................................................................................................................................CATGGAAGTGAGGACAGGGAGA...................................................................................2211.001.00-----------------------------------------------1.00--------------
.........................................................................................................................................................................GTAACTAACTCTGCACTCCTC............................................................2111.001.00--------1.00-----------------------------------------------------
...............................................................................................................................................ATCATGGAAGTGAGGACAGG.......................................................................................2011.001.00-----------------------------------------------------1.00--------
....................................................................................................................................................................................TGCACTCCTCTCTCCCACAGT.................................................211.000.00-------------1.00------------------------------------------------
..................................................................................................................................................ATGGAAGTGAGGACAGGGAGA...................................................................................2111.001.00-----------------------------1.00--------------------------------
........................................................................................................................................................................................................................................GCATGATCAGAGGGATCGTA201.000.00---------------1.00----------------------------------------------
..............................................................................................................................................................................................................TTCAGAGTGCCTGCCCCGACTAACCT..................2611.001.00----------------------------------1.00---------------------------
................................................................................................................................................TCATGGAAGTGAGGACAGGGAGT...................................................................................2311.006.00---1.00----------------------------------------------------------
................................................................................................................................................TCATGGAAGTGAGGACA.........................................................................................1720.500.50----------------------------------------------------------0.50---
...........................................................................................................................................................AGGACAGGGAGAATGTA..............................................................................1730.330.33-----------------------------------------------------------0.33--
..........................................................................................................................................................GAGGACAGGGAGAATGT...............................................................................1740.250.25------------------------------------------------------------0.25-

Antisense strand
GATAGGGATATGTATGGGGAAGCCTTACTAAATTGTACCCACAGGGAAAGTCTGGCTACACTGCCTTGGCAAGCTGAAACTTTGACCTTGATTTGTTCTTAGGCGTTTGATTCCCTCCCCTACATCTAGGATAATACGGTTTTATCATGGAAGTGAGGACAGGGAGAATGTAACTAACTCTGCACTCCTCTCTCCCACAGGGGGATTTCAGAGTGCCTGCCCCGACTAACCTGCATGATCAGAGGGATCG
........................................................................................................................................................(((.(((.((((((..((((........)))))))).)).))))))....................................................
............................................................................................................................................141........................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR206942(GSM723283)
other. (brain)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		mjTestesWT3()
Testes Data. (testes)		SRR306537(GSM750580)
19-24nt. (ago2 brain)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		SRR042452(GSM539844)
mouse B1 B cells [09-002]. (b cell)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR116846(GSM678422)
Small RNA deep sequencing from mouse epididym. (epididymis)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR042465(GSM539857)
mouse CD4+ T cells (spleen) [09-002]. (spleen)		SRR306531(GSM750574)
19-24nt. (ago2 brain)		SRR042472(GSM539864)
mouse iTreg cells [09-002]. (lymph)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)		SRR042475(GSM539867)
mouse embryonic fibroblast cells [09-002]. (fibroblast)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		GSM510452(GSM510452)
newborn_rep8. (total RNA)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR037912(GSM510449)
newborn_rep5. (total RNA)		SRR306527(GSM750570)
19-24nt. (ago2 brain)		SRR042444(GSM539836)
mouse pre B cells [09-002]. (b cell)		SRR073955(GSM629281)
total RNA. (blood)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		GSM510455(GSM510455)
newborn_rep11. (total RNA)		GSM509280(GSM509280)
small RNA cloning by length. (testes)		SRR206940(GSM723281)
other. (brain)		SRR073954(GSM629280)
total RNA. (blood)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		SRR042461(GSM539853)
mouse dendritic cells [09-002]. (bone marrow)		GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)		SRR065056(SRR065056)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR345205(SRX097266)
source: size fractionated RNA from mouse hipp. (brain)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		SRR042456(GSM539848)
mouse hematopoetic progenitor cells [09-002]. (bone marrow)		SRR042462(GSM539854)
mouse macrophages [09-002]. (bone marrow)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)		GSM640581(GSM640581)
small RNA in the liver with paternal control. (liver)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR039610(GSM527274)
small RNA-Seq. (brain)		SRR402760(SRX117943)
source: ES E14 male cells. (ESC)
........................................................................................................................................................................................................................CTGCCCCGACTAACCTGA................ 181.000.00------------------------1.00-------------------------------------
......................................................................................................................................................................................CACTCCTCTCTCCCAGTCT................................................. 191.000.00-----------------------------------------1.00--------------------
..........................................................................................................................................................................................................................GCCCCGACTAACC................... 1380.120.12-------------------------------------------------------------0.12