ID: uc009hzo.10
GENE: Sema4b(11)
chr7:87365168-87365377+


(1)
AGO2.ip 		(2)
B-CELL 		(7)
BRAIN 		(5)
EMBRYO 		(6)
ESC 		(1)
LIVER 		(1)
LYMPH 		(7)
OTHER 		(1)
OTHER.ip 		(3)
OTHER.mut 		(5)
PIWI.ip 		(2)
PIWI.mut 		(1)
SPLEEN 		(24)
TESTES 		(1)
THYMUS

Sense strand
CCGTGTGCCTGGCCTGCACAGCACTTATGATGTCCTATTTCTGGGCACTGGTGAGTGTCTGCAGCCCTGCAGAATTGAGTTAAGGAGGGCAATACATGCATGGCTGGTAGATCGTGGGCGGTGGGCTCCACCACGGCCTGAGTCGTGACCATGCTTGCAGGTGATGGCCGCCTGCACAAAGCAGTGACCCTGAGCTCCAGAGTCCACATC
................................................................................................((((.(((((((.(((..(((((.((((......)))).))))).)))...)))).)))))))...................................................
.......................................................................................88......................................................................160................................................
SizePerfect hitTotal NormPerfect NormSRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		mjTestesWT4()
Testes Data. (testes)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)		GSM509280(GSM509280)
small RNA cloning by length. (testes)		GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)		SRR402760(SRX117943)
source: ES E14 male cells. (ESC)		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)		SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		mjTestesWT3()
Testes Data. (testes)		SRR037925(GSM510463)
e9p5_rep3. (embryo)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		GSM509276(GSM509276)
small RNA cloning by length. (testes)		SRR028731(GSM400968)
Mili-wt-associated. (testes)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR042446(GSM539838)
mouse mature B cells (spleen) replicate 1 [09-002]. (b cell)		GSM475280(GSM475280)
Mili-IP. (mili testes)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR051939(GSM545783)
Mov10L1-associated piRNAs. (mov10L testes)		GSM640579(GSM640579)
small RNA in the liver with paternal Low pro. (liver)		SRR014231(GSM319955)
16.5 dpc total. (testes)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR059767(GSM562829)
DN3_Dicer. (thymus)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		SRR042466(GSM539858)
mouse CD8+ T cells (spleen) [09-002]. (spleen)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR402761(SRX117944)
source: ES E14 male cells. (ESC)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR014235(GSM319959)
2 dpp total. (testes)		SRR042477(GSM539869)
mouse brain tissue [09-002]. (brain)		SRR525237(SRA056111/SRX170313)
Mus musculus domesticus miRNA sequencing. (Blood)		SRR073955(GSM629281)
total RNA. (blood)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
............................................................................................TACATGCATGGCTGGTAGATCGTGG.............................................................................................25124.0024.005.004.00-5.001.001.001.001.00-2.00--2.00------------1.00--------1.00--------------------
............................................................................................TACATGCATGGCTGGTAGATCGTGGG............................................................................................26111.0011.005.002.00-1.001.00-1.001.00-----------------------------------------------
........................................................................................................TGGTAGATCGTGGGCGGTG.......................................................................................19110.0010.00--10.00----------------------------------------------------
...............................................................................................ATGCATGGCTGGTAGATCGTGGGCGGT........................................................................................2714.004.002.00------1.00------------1.00----------------------------------
........................................................................................................................................CCTGAGTCGTGACCATGCTTGCAG..................................................2413.003.00--------3.00----------------------------------------------
.............................................................................................ACATGCATGGCTGGTAGATCGTGG.............................................................................................2413.003.001.00----1.00--------------------1.00----------------------------
.............................................................................................ACATGCATGGCTGGTAGATCGTGGG............................................................................................2513.003.00-1.00----------1.00----------------------------------1.00-------
.............................................................................................ACATGCATGGCTGGTAGATCGT...............................................................................................2212.002.00-------------2.00-----------------------------------------
............................................................................................TACATGCATGGCTGGTAGA...................................................................................................1912.002.00------------------------1.00-----------------------1.00------
............................................................................................TACATGCATGGCTGGTAGATCGTGGT............................................................................................2612.0024.001.00-----------------------1.00------------------------------
.............................................................................................ACATGCATGGCTGGTAGATCGTGGGC...........................................................................................2612.002.001.00----1.00-------------------------------------------------
...................................................................................................................GGGCGGTGGGCTCCACCACGGCCTGAGTCGTGA..............................................................3312.002.00-----------------------2.00-------------------------------
............................................................................................TACATGCATGGCTGGTAGATCGTGGGCGGTGGGCTCCACCACGGCCTGAGTCGTGACCATGCTTGCAGT.................................................692.000.00-----------2.00-------------------------------------------
..............................................................................................CATGCATGGCTGGTAGATCGTGGG............................................................................................2412.002.00-----1.00--------------------------------------------1.00----
...............................................................................................ATGCATGGCTGGTAGATCGTGGGCGG.........................................................................................2612.002.00----1.00--1.00-----------------------------------------------
..................................................GTGAGTGTCTGCAGCCCTGCAGA.........................................................................................................................................2312.002.00---------------------2.00---------------------------------
................................................................................................................................................................................CAAAGCAGTGACCCTGAGCTCC............2212.002.00----------------2.00--------------------------------------
.............................................................................................ACATGCATGGCTGGTAGATCGTG..............................................................................................2312.002.00----1.00------------------------1.00-------------------------
.....................................................................................................................................................................................CAGTGACCCTGAGCTCCAGAG........2112.002.00--------------1.00----------------------1.00-----------------
...........................................................................................................................................GAGTCGTGACCATGCTTGCAG..................................................2112.002.00----------2.00--------------------------------------------
..........................................................................................................................................TGAGTCGTGACCATGCTTGCAG..................................................2212.002.00--------------------------------1.00---------1.00------------
.................................................................................................................................................................................AAAGCAGTGACCCTGAGCTCCAGAG........2511.001.00---------1.00---------------------------------------------
........................................................................................................................................CCTGAGTCGTGACCATGCTTGC....................................................2211.001.00-----------------------------------------1.00-------------
...........................................................................................ATACATGCATGGCTGGTAGATCGTGGG............................................................................................2711.001.00---1.00---------------------------------------------------
....................................................................................................................................................................................GCAGTGACCCTGAGCTCCAGAGTCCAC...2711.001.00-1.00-----------------------------------------------------
........................................................................................................TGGTAGATCGTGGGCGGTGGG.....................................................................................2111.001.00------------------------------------1.00------------------
...................................................................TGCAGAATTGAGTTAACCGA...........................................................................................................................201.000.00-----------------1.00-------------------------------------
...........................................................................................................................................................................................CCCTGAGCTCCAGAGTCCAC...2011.001.00---------------1.00---------------------------------------
..............................................................................................CATGCATGGCTGGTAGATCGTGGGC...........................................................................................2511.001.00---1.00---------------------------------------------------
............................................................................................TACATGCATGGCTGGTAGATCGTGA.............................................................................................2511.001.00-------------------1.00-----------------------------------
.........TGGCCTGCACAGCACTTATGATGTCCTA.............................................................................................................................................................................2811.001.00---1.00---------------------------------------------------
.............................................................................................ACATGCATGGCTGGTAGATCGTGGT............................................................................................2511.003.001.00------------------------------------------------------
...............................................................................................ATGCATGGCTGGTAGATCGTGGGCGGTG.......................................................................................2811.001.001.00------------------------------------------------------
..........................................................................................................................................TGAGTCGTGACCATGCTTGCAGT.................................................2311.002.00-----------------------------------1.00-------------------
..............................................................................................CATGCATGGCTGGTAGATCGT...............................................................................................2111.001.00------------------1.00------------------------------------
...................................................................TGCAGAATTGAGTTAATCGA...........................................................................................................................201.000.00---------------------------------------1.00---------------
.........................TATGATGTCCTATTTCTGGGCACTGGT..............................................................................................................................................................2711.001.00---------------------------------1.00---------------------
............................................................................................TACATGCATGGCTGGTAGATCGTG..............................................................................................2411.001.00------1.00------------------------------------------------
.............................................................................................................................................................................GCACAAAGCAGTGACAGGT..................191.000.00-----------------------------------------------------1.00-
................................TCCTATTTCTGGGCACTGGTGATGGC........................................................................................................................................................261.000.00-------------------------------------------------1.00-----
.................................................................................................GCATGGCTGGTAGATCGTGGGCGG.........................................................................................2411.001.00----------------------------------------1.00--------------
.......................................................................................................................................................................................GTGACCCTGAGCTCCAGAGT.......2011.001.00----1.00--------------------------------------------------
.............................................................................................ACATGCATGGCTGGTAGATCGTGGGCGA.........................................................................................281.000.00--------------1.00----------------------------------------
..............................................................................................CATGCATGGCTGGTAGATCGTG..............................................................................................2211.001.00---------------------------1.00---------------------------
................................................................................................................................................................................CAAAGCAGTGACCCTGAGCTCCAG..........2411.001.00------1.00------------------------------------------------
...............................................................................................ATGCATGGCTGGTAGATCGTGGGCG..........................................................................................2511.001.00-------------------------------1.00-----------------------
.......................................................................................................................................................................................GTGACCCTGAGCTCCAGAGTC......2111.001.00----------1.00--------------------------------------------
.............................................................................................ACATGCATGGCTGGTAGATCGTGA.............................................................................................2411.002.00--------------------------------------------1.00----------
................................................................................................TGCATGGCTGGTAGATCGTGGGCGG.........................................................................................2511.001.00-1.00-----------------------------------------------------
.................................................................................................GCATGGCTGGTAGATCGTGGGCGGT........................................................................................2511.001.00----------------------------1.00--------------------------
......................................................................AGAATTGAGTTAAGGTAG..........................................................................................................................181.000.00--------------------------------------1.00----------------
........................................................................................................................................CCTGAGTCGTGACCATGCTTGCAGA.................................................2511.003.00-------------------------------------------1.00-----------
..................................................................................................................................................................................AAGCAGTGACCCTGAGCTCCAGAGTCCA....2811.001.00---------------------------------------------------1.00---
............................................................................................TACATGCATGGCTGGTGGT...................................................................................................191.000.00-----------------1.00-------------------------------------
..........................ATGATGTCCTATTTCTGGGCACT.................................................................................................................................................................2311.001.00------------------------------1.00------------------------
..........................................................................................................................................TGAGTCGTGACCATGCTTGC....................................................2011.001.00----------------------------------------------1.00--------
..............................................................................................CATGCATGGCTGGTAGATCGTGGGCGG.........................................................................................2711.001.00--------------------1.00----------------------------------
....................................................................................................TGGCTGGTAGATCGTGGGCGGAATT.....................................................................................251.000.00------------------1.00------------------------------------
.......................................................................................................................................................................CCGCCTGCACAAAGCAGT.........................1811.001.00---------------1.00---------------------------------------
........CTGGCCTGCACAGCACTTATGATGTCCTA.............................................................................................................................................................................2911.001.00-1.00-----------------------------------------------------
................................................................................................TGCATGGCTGGTAGATCGTGGGCGGT........................................................................................2611.001.00---------------------------------------------1.00---------
.....................................................................................................................................CGGCCTGAGTCGTGACCATGCTTGCAG..................................................2711.001.00-------------------1.00-----------------------------------
..............................................................AGCCCTGCAGAATTGAGTTAAGGAGGGCAATACATGCATGGCTGGTAGATCGTGGGCG..........................................................................................5811.001.00-----------1.00-------------------------------------------
...........................................................................................ATACATGCATGGCTGGGAGG...................................................................................................201.000.00-1.00-----------------------------------------------------
..................................................................................................................TGGGCGGTGGGCTCC.................................................................................1530.330.33------------------------------------------------------0.33

Antisense strand
CCGTGTGCCTGGCCTGCACAGCACTTATGATGTCCTATTTCTGGGCACTGGTGAGTGTCTGCAGCCCTGCAGAATTGAGTTAAGGAGGGCAATACATGCATGGCTGGTAGATCGTGGGCGGTGGGCTCCACCACGGCCTGAGTCGTGACCATGCTTGCAGGTGATGGCCGCCTGCACAAAGCAGTGACCCTGAGCTCCAGAGTCCACATC
................................................................................................((((.(((((((.(((..(((((.((((......)))).))))).)))...)))).)))))))...................................................
.......................................................................................88......................................................................160................................................
SizePerfect hitTotal NormPerfect NormSRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		mjTestesWT4()
Testes Data. (testes)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)		GSM509280(GSM509280)
small RNA cloning by length. (testes)		GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)		SRR402760(SRX117943)
source: ES E14 male cells. (ESC)		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)		SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		mjTestesWT3()
Testes Data. (testes)		SRR037925(GSM510463)
e9p5_rep3. (embryo)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		GSM509276(GSM509276)
small RNA cloning by length. (testes)		SRR028731(GSM400968)
Mili-wt-associated. (testes)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR042446(GSM539838)
mouse mature B cells (spleen) replicate 1 [09-002]. (b cell)		GSM475280(GSM475280)
Mili-IP. (mili testes)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR051939(GSM545783)
Mov10L1-associated piRNAs. (mov10L testes)		GSM640579(GSM640579)
small RNA in the liver with paternal Low pro. (liver)		SRR014231(GSM319955)
16.5 dpc total. (testes)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR059767(GSM562829)
DN3_Dicer. (thymus)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		SRR042466(GSM539858)
mouse CD8+ T cells (spleen) [09-002]. (spleen)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR402761(SRX117944)
source: ES E14 male cells. (ESC)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR014235(GSM319959)
2 dpp total. (testes)		SRR042477(GSM539869)
mouse brain tissue [09-002]. (brain)		SRR525237(SRA056111/SRX170313)
Mus musculus domesticus miRNA sequencing. (Blood)		SRR073955(GSM629281)
total RNA. (blood)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
........................................................................................................................................................................................TGACCCTGAGCTCCATTGC....... 192.000.00----------------------2.00--------------------------------
...........................................................................................ATACATGCATGGCTGAGG..................................................................................................... 181.000.00----------------------------------------------------1.00--