ID: uc009gao.40
GENE: Ryr1(40)
chr7:29845104-29845353-


(1)
AGO1.ip 		(5)
AGO2.ip 		(1)
AGO3.ip 		(24)
BRAIN 		(1)
CELL-LINE 		(1)
DCR.mut 		(1)
DGCR8.mut 		(6)
EMBRYO 		(3)
ESC 		(1)
LIVER 		(1)
LUNG 		(8)
OTHER 		(2)
SKIN 		(1)
TDRD1.ip 		(3)
TESTES 		(8)
TOTAL-RNA

Sense strand
TAATGATGTTGAGGTGTAAAGTTCTTGGGGGGTCACAGTTTCAGTGGGAAGCTGTGGAAGGCACCTGGGTTGGAGGCTGAGATAGGCAGGATGGGCTCTTGGAGACTCTTTCAGGTATAAGGTGGTTTAGGTGTCAGGCGGGTTGTAGGGAAGGTATTGGATTGACAGTTGGCATACCCTGACCTATCCCTGCACCCCAGTCCTGGGGCTTCCCAACAGCGTGGAGGAGATGTGTCCTGACATCCCAGTG
...........................................................................................................................................(((.((((((((((((...((..((........))...))..)))).)))))))).)))....................................................
....................................................................................................................................133................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		mjTestesWT1()
Testes Data. (testes)		SRR553582(SRX182788)
source: Brain. (Brain)		SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)		SRR042474(GSM539866)
mouse embryonic stem cells [09-002]. (ESC)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		GSM510456(GSM510456)
newborn_rep12. (total RNA)		SRR042483(GSM539875)
mouse muscle tissue [09-002]. (muscle)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		GSM510452(GSM510452)
newborn_rep8. (total RNA)		GSM510454(GSM510454)
newborn_rep10. (total RNA)		SRR306529(GSM750572)
19-24nt. (ago2 brain)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR306531(GSM750574)
19-24nt. (ago2 brain)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR306530(GSM750573)
19-24nt. (ago2 brain)		GSM510455(GSM510455)
newborn_rep11. (total RNA)		SRR206940(GSM723281)
other. (brain)		SRR206939(GSM723280)
other. (brain)		SRR116846(GSM678422)
Small RNA deep sequencing from mouse epididym. (epididymis)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR023847(GSM307156)
mESv6.5smallrna_rep1. (cell line)		SRR037912(GSM510449)
newborn_rep5. (total RNA)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR037920(GSM510458)
e12p5_rep2. (embryo)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		GSM510450(GSM510450)
newborn_rep6. (total RNA)		SRR073954(GSM629280)
total RNA. (blood)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR037914(GSM510451)
newborn_rep7. (total RNA)		SRR345205(SRX097266)
source: size fractionated RNA from mouse hipp. (brain)		SRR042456(GSM539848)
mouse hematopoetic progenitor cells [09-002]. (bone marrow)		GSM510453(GSM510453)
newborn_rep9. (total RNA)		SRR042477(GSM539869)
mouse brain tissue [09-002]. (brain)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR037921(GSM510459)
e12p5_rep3. (embryo)		GSM510444(GSM510444)
brain_rep5. (brain)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)		SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)		SRR039610(GSM527274)
small RNA-Seq. (brain)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		SRR206942(GSM723283)
other. (brain)		SRR038743(GSM527278)
small RNA-Seq. (dicer brain)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)
...................................................................................................................................................................................TGACCTATCCCTGCACCCCAGT.................................................221202.00202.00173.003.00---1.001.003.00--2.001.002.00-2.002.001.00-1.001.001.00----1.00--------1.001.00---1.00--1.00-----1.00-1.00----1.00-
.........................................................................................................................................GCGGGTTGTAGGGAAGGTATTGG..........................................................................................23141.0041.0027.007.00-2.00--1.00-2.001.00---------------------------------------1.00-------
...................................................................................................................................................................................TGACCTATCCCTGCACCCCAGA.................................................22136.0032.0029.001.00--------1.00--1.00--2.00-1.00--------------------------------1.00-----
...................................................................................................................................................................................TGACCTATCCCTGCACCCCAG..................................................21132.0032.0032.00--------------------------------------------------------
.........................................................................................................................................GCGGGTTGTAGGGAAGGTATTG...........................................................................................22121.0021.0013.004.00-1.001.00---1.001.00-----------------------------------------------
..........................................................................................................................................CGGGTTGTAGGGAAGGTATTGG..........................................................................................22120.0020.0010.00----3.002.00-1.001.00----------1.00----------------1.00---1.00---------------
..................................................................................................................................................................................CTGACCTATCCCTGCACCCCAGT.................................................23120.0020.0013.001.00----1.00--1.00---1.00-1.00-1.00-------------1.00-------------------------
..........................................................................................................................................CGGGTTGTAGGGAAGGTATTGGA.........................................................................................23116.0016.0011.00-4.001.00-----------------------------------------------------
.........................................................................................................................................GCGGGTTGTAGGGAAGGTATT............................................................................................21110.0010.003.00--3.002.00------------------2.00---------------------------------
.........................................................................................................................................GCGGGTTGTAGGGAAGGTATTGGAT........................................................................................25110.0010.004.00-6.00------------------------------------------------------
..................................................................................................................................................................................CTGACCTATCCCTGCACCCCAG..................................................2219.009.007.001.00-----------1.00-------------------------------------------
...................................................................................................................................................................................TGACCTATCCCTGCACCCCAGTT................................................2318.00202.008.00--------------------------------------------------------
........................................................................................................................................GGCGGGTTGTAGGGAAGGTATTGG..........................................................................................2417.007.003.001.00---1.00------------------2.00--------------------------------
...................................................................................................................................................................................TGACCTATCCCTGCACCCCAGTA................................................2317.00202.007.00--------------------------------------------------------
...................................................................................................................................................................................TGACCTATCCCTGCACCCCAGAA................................................2316.0032.001.00------1.00---1.00-------------1.00----1.00-1.00------------------------
...................................................................................................................................................................................TGACCTATCCCTGCACCCCATT.................................................2215.002.005.00--------------------------------------------------------
..........................................................................................................................................CGGGTTGTAGGGAAGGTATTGGT.........................................................................................2315.0020.002.00----1.00--------------------------------1.00-------------1.00----
.........................................................................................................................................GCGGGTTGTAGGGAAGGTATTGGA.........................................................................................2415.005.005.00--------------------------------------------------------
...................................................................................................................................................................................TGACCTATCCCTGCACCCCAGAT................................................2314.0032.004.00--------------------------------------------------------
..........................................................................................................................................CGGGTTGTAGGGAAGGTATTGGAT........................................................................................2414.004.001.00-----------1.00---------------------------1.00----1.00-----------
...................................................................................................................................................................................TGACCTATCCCTGCACCCC....................................................1913.003.003.00--------------------------------------------------------
...................................................................................................................................................................................TGACCTATCCCTGCACCCCAGC.................................................2213.0032.003.00--------------------------------------------------------
.................................................................................................................................................................................CCTGACCTATCCCTGCACCCCAT..................................................233.000.001.00-------------1.00--1.00---------------------------------------
..........................................................................................................................................CGGGTTGTAGGGAAGGTATT............................................................................................2013.003.00----2.00-----------------------------------------1.00----------
........................................................................................................................................GGCGGGTTGTAGGGAAGGTATTG...........................................................................................2313.003.003.00--------------------------------------------------------
.........................................................................................................................................GCGGGTTGTAGGGAAGGTATTGGT.........................................................................................2413.0041.003.00--------------------------------------------------------
...................................................................................................................................................................................TGACCTATCCCTGCACCCCAGTTT...............................................2412.00202.002.00--------------------------------------------------------
..................................................................................................................................................................................CTGACCTATCCCTGCACCCCAGTT................................................2412.0020.002.00--------------------------------------------------------
.........................................................................................................................................GCGGGTTGTAGGGAAGGTAT.............................................................................................2012.002.002.00--------------------------------------------------------
...................................................................................................................................................................................TGACCTATCCCTGCACCCCA...................................................2012.002.002.00--------------------------------------------------------
.................................................................................................................................................................................CCTGACCTATCCCTGCACCCCAGT.................................................2412.002.001.00-----1.00--------------------------------------------------
..................................................................................................................................................................................CTGACCTATCCCTGCACCCCAGA.................................................2312.009.002.00--------------------------------------------------------
..........................................................................................................................................CGGGTTGTAGGGAAGGTATTGGAAA.......................................................................................2511.0016.00--------1.00------------------------------------------------
...........................................................................................................................................GGGTTGTAGGGAAGGTATTGG..........................................................................................2111.001.00----------------------1.00----------------------------------
..................................................................................................................................................................................CTGACCTATCCCTGCACCCCAGTTT...............................................2511.0020.00-----------------------------------------------1.00---------
.........................................................................................................................................GCGGGTTGTAGGGAAGGTATTGT..........................................................................................2311.0021.001.00--------------------------------------------------------
..................................................................................................................................................................................CTGACCTATCCCTGCACCCC....................................................2011.001.00-------------------------------------------1.00-------------
.................................................................................................................................................................................CCTGACCTATCCCTGCACCCC....................................................2111.001.001.00--------------------------------------------------------
.........................................................................................................................................GCGGGTTGTAGGGAAGGTATTGGTAT.......................................................................................2611.0041.001.00--------------------------------------------------------
..................................................................................................................................................................................CTGACCTATCCCTGCACCCCAT..................................................2211.001.001.00--------------------------------------------------------
........................................................GAAGGCACCTGGGTTCACC...............................................................................................................................................................................191.000.00---------------------1.00-----------------------------------
...........................................................................................................................................................ATTGGATTGACAGTTGGC.............................................................................1811.001.00--------------------------------------------1.00------------
.................................................................TGGGTTGGAGGCTGAGGA.......................................................................................................................................................................181.000.00-----------------------------------------------------1.00---
.................................................................................................................................................................................CCTGACCTATCCCTGCACCCCAGA.................................................241.000.001.00--------------------------------------------------------
...................................................................................................................................................................................TGACCTATCCCTGCACCCCAGAGA...............................................2411.0032.00-------1.00-------------------------------------------------
.........................................................................................................................................GCGGGTTGTAGGGAAGGTATTGA..........................................................................................2311.0021.001.00--------------------------------------------------------
...................................................................................................................................................................................TGACCTATCCCTGCACCCCAGTAA...............................................2411.00202.00-1.00-------------------------------------------------------
.............................................GGGAAGCTGTGGAAGCTCT..........................................................................................................................................................................................191.000.00----------------------------1.00----------------------------
..........................................................................................................................................CGGGTTGTAGGGAAGGTATTGA..........................................................................................221.000.001.00--------------------------------------------------------
..........................................................................................................................................CGGGTTGTAGGGAAGGTATTGTA.........................................................................................231.000.00-----------1.00---------------------------------------------
..........................................................................................................................................CGGGTTGTAGGGAAGGAATT............................................................................................201.000.00----1.00----------------------------------------------------
.........................................................................................................................................GCGGGTTGTAGGGAAGGTATTGGAAT.......................................................................................2611.005.001.00--------------------------------------------------------
..................................................................................................................................................................................CTGACCTATCCCTGCACCCCA...................................................2111.001.001.00--------------------------------------------------------
.........TGAGGTGTAAAGTTCTGCGG.............................................................................................................................................................................................................................201.000.00-----------------------------1.00---------------------------
...................................................................................................................................................................................TGACCTATCCCTGCACCCCAGTAT...............................................2411.00202.001.00--------------------------------------------------------
.........................................................................................................................................GCGGGTTGTAGGGAAGGTATTGGATT.......................................................................................2611.001.001.00--------------------------------------------------------
.........................................................................................................................................GCGGGTTGTAGGGAAGGTA..............................................................................................1911.001.00-------------------1.00-------------------------------------
............................................................................................................TTTCAGGTATAAGGTGGGA...........................................................................................................................191.000.00----------------------1.00----------------------------------
..................................................................................................................................................................................CTGACCTATCCCTGCACCCCAGTAT...............................................2511.0020.001.00--------------------------------------------------------
.........................................................................................................................................GCGGGTTGTAGGGAAGGTATTTG..........................................................................................2311.0010.00----------1.00----------------------------------------------
.........................................................................................................................................GCGGGTTGTAGGGAAGGGATT............................................................................................211.000.00---------------------------1.00-----------------------------
.............................................................................................................................................................TGGATTGACAGTTGGTTA...........................................................................181.000.00------------------------------------------------------1.00--
...................................................................................................................................................................................TGACCTATCCCTGCACCCCACC.................................................2211.002.001.00--------------------------------------------------------
..................................................................................................................................GTGTCAGGCGGGTTG.........................................................................................................1520.500.50--------------------------0.50------------------------------
...........................................................................................................................................................................................................................CGTGGAGGAGATGTGT...............1630.330.33--------------------------------------------------------0.33

Antisense strand
TAATGATGTTGAGGTGTAAAGTTCTTGGGGGGTCACAGTTTCAGTGGGAAGCTGTGGAAGGCACCTGGGTTGGAGGCTGAGATAGGCAGGATGGGCTCTTGGAGACTCTTTCAGGTATAAGGTGGTTTAGGTGTCAGGCGGGTTGTAGGGAAGGTATTGGATTGACAGTTGGCATACCCTGACCTATCCCTGCACCCCAGTCCTGGGGCTTCCCAACAGCGTGGAGGAGATGTGTCCTGACATCCCAGTG
...........................................................................................................................................(((.((((((((((((...((..((........))...))..)))).)))))))).)))....................................................
....................................................................................................................................133................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		mjTestesWT1()
Testes Data. (testes)		SRR553582(SRX182788)
source: Brain. (Brain)		SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)		SRR042474(GSM539866)
mouse embryonic stem cells [09-002]. (ESC)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		GSM510456(GSM510456)
newborn_rep12. (total RNA)		SRR042483(GSM539875)
mouse muscle tissue [09-002]. (muscle)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		GSM510452(GSM510452)
newborn_rep8. (total RNA)		GSM510454(GSM510454)
newborn_rep10. (total RNA)		SRR306529(GSM750572)
19-24nt. (ago2 brain)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR306531(GSM750574)
19-24nt. (ago2 brain)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR306530(GSM750573)
19-24nt. (ago2 brain)		GSM510455(GSM510455)
newborn_rep11. (total RNA)		SRR206940(GSM723281)
other. (brain)		SRR206939(GSM723280)
other. (brain)		SRR116846(GSM678422)
Small RNA deep sequencing from mouse epididym. (epididymis)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR023847(GSM307156)
mESv6.5smallrna_rep1. (cell line)		SRR037912(GSM510449)
newborn_rep5. (total RNA)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR037920(GSM510458)
e12p5_rep2. (embryo)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		GSM510450(GSM510450)
newborn_rep6. (total RNA)		SRR073954(GSM629280)
total RNA. (blood)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR037914(GSM510451)
newborn_rep7. (total RNA)		SRR345205(SRX097266)
source: size fractionated RNA from mouse hipp. (brain)		SRR042456(GSM539848)
mouse hematopoetic progenitor cells [09-002]. (bone marrow)		GSM510453(GSM510453)
newborn_rep9. (total RNA)		SRR042477(GSM539869)
mouse brain tissue [09-002]. (brain)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR037921(GSM510459)
e12p5_rep3. (embryo)		GSM510444(GSM510444)
brain_rep5. (brain)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)		SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)		SRR039610(GSM527274)
small RNA-Seq. (brain)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		SRR206942(GSM723283)
other. (brain)		SRR038743(GSM527278)
small RNA-Seq. (dicer brain)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)
.................................................................................................................................................................................CCTGACCTATCCCTGCCGG...................................................... 191.000.00---------------------1.00-----------------------------------
............................GGGGTCACAGTTTCAGTT............................................................................................................................................................................................................ 181.000.00------------------------------------1.00--------------------
............................................................................................................................................................................................CCTGCACCCCAGTCCTGT............................................ 181.000.00--------------------------1.00------------------------------
.......................................................................................................................................................................................CTATCCCTGCACCCCAAG................................................. 181.000.00---------------------------------1.00-----------------------
..................................................................................................................................................................................................................TCCCAACAGCGTGG.......................... 1470.140.14----0.14----------------------------------------------------