ID: uc009fyn.8
GENE: Plekhg2(8)
chr7:29150515-29150764-


(2)
AGO1.ip 		(5)
AGO2.ip 		(2)
AGO3.ip 		(6)
B-CELL 		(14)
BRAIN 		(10)
CELL-LINE 		(2)
DCR.mut 		(2)
DGCR8.mut 		(11)
EMBRYO 		(8)
ESC 		(6)
FIBROBLAST 		(1)
HEART 		(1)
KIDNEY 		(6)
LIVER 		(1)
LUNG 		(1)
LYMPH 		(12)
OTHER 		(11)
OTHER.mut 		(2)
OVARY 		(4)
PIWI.ip 		(2)
PIWI.mut 		(7)
SKIN 		(6)
SPLEEN 		(27)
TESTES 		(2)
THYMUS 		(6)
TOTAL-RNA 		(3)
UTERUS

Sense strand
AGTGGGAGTCAGAAAGAGGAGGGAGTGTATCTTCATGAAAGGAGGGAGGAGTCTGGTAAGAGAGTGACCAGAATCAGTGATGGATTAAGAGGCAAAACAGCTGGTGGGAAGCGTCTTTGTGGCAGATGGGAGCCCCGGTATTTTCTGAAGGGCGCCTGTGCAGGACGCGCTCAGCTTCCTGCCCTCTCTGCCCTCCTCAGTGCTGTAACCTCAGCGTAAGCGAGACTCCGCGGGACCCCTTAGGATTTAA
................................................................................................................................................((((((((((.....((((((.((.....)).))))))......))))))..))))..................................................
..........................................................................................................................................139..........................................................200................................................
SizePerfect hitTotal NormPerfect NormmjTestesWT4()
Testes Data. (testes)		mjTestesWT3()
Testes Data. (testes)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		mjLiverKO3()
Liver Data. (Zcchc11 liver)		mjLiverWT1()
Liver Data. (liver)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		mjTestesWT1()
Testes Data. (testes)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		mjLiverKO1()
Liver Data. (Zcchc11 liver)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)		mjTestesKO6()
Testes Data. (Zcchc11 testes)		SRR014234(GSM319958)
Ovary total. (ovary)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		mjTestesWT2()
Testes Data. (testes)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR685340(GSM1079784)
Small RNAs (15-50 nts in length) from immorta. (dicer cell line)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)		SRR059770(GSM562832)
Treg_Dicer. (spleen)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		SRR073954(GSM629280)
total RNA. (blood)		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)		SRR402761(SRX117944)
source: ES E14 male cells. (ESC)		SRR345204(SRX097265)
source: size fractionated RNA from mouse hipp. (brain)		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)		GSM416732(GSM416732)
MEF. (cell line)		SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		GSM510456(GSM510456)
newborn_rep12. (total RNA)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR037921(GSM510459)
e12p5_rep3. (embryo)		GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		mjLiverWT3()
Liver Data. (liver)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR059766(GSM562828)
DN3_Drosha. (thymus)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR032476(GSM485234)
sRNA_delayed_deep_sequencing. (uterus)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)		SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)		SRR014233(GSM319957)
16.5 dpc MIWI2. (miwi2 testes)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		SRR037920(GSM510458)
e12p5_rep2. (embryo)		SRR059765(GSM562827)
DN3_control. (thymus)		SRR014230(GSM319954)
10 dpp Dnmt3L-KO MILI. (mili testes)		SRR038740(GSM527275)
small RNA-Seq. (dicer brain)		SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)		SRR042444(GSM539836)
mouse pre B cells [09-002]. (b cell)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR685339(GSM1079783)
Small RNAs (15-50 nts in length) from immorta. (cell line)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR029041(GSM433293)
6w_homo_tdrd6-KO. (tdrd6 testes)		SRR390299(GSM849857)
cell line: NIH-3T3cell type: fibroblastip ant. (ago2 fibroblast)		SRR037914(GSM510451)
newborn_rep7. (total RNA)		GSM475281(GSM475281)
total RNA. (testes)		mjTestesKO5()
Testes Data. (Zcchc11 testes)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		Ago2IP504(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		SRR014229(GSM319953)
10 dpp MILI. (mili testes)		SRR059775(GSM562837)
MEF_Drosha. (MEF)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		GSM510444(GSM510444)
brain_rep5. (brain)		SRR037899(GSM510435)
ovary_rep4. (ovary)		SRR059774(GSM562836)
MEF_control. (MEF)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		SRR042445(GSM539837)
mouse immature B cells [09-002]. (b cell)		SRR065049(SRR065049)
Tissue-specific Regulation of Mouse MicroRNA . (liver)		SRR346415(SRX098256)
source: Testis. (Testes)		SRR206939(GSM723280)
other. (brain)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)		SRR037925(GSM510463)
e9p5_rep3. (embryo)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		Ago2IP517(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)		SRR346414(SRX098255)
Global profiling of miRNA and the hairpin pre. (Spleen)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		GSM510452(GSM510452)
newborn_rep8. (total RNA)		SRR029123(GSM416611)
NIH3T3. (cell line)		SRR039610(GSM527274)
small RNA-Seq. (brain)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		RuiDGCR8KO(Rui)
DGCR8-dependent microRNA biogenesis is essent. (dgcr8 skin)		SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR042465(GSM539857)
mouse CD4+ T cells (spleen) [09-002]. (spleen)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR042446(GSM539838)
mouse mature B cells (spleen) replicate 1 [09-002]. (b cell)		SRR037910(GSM510447)
newborn_rep3. (total RNA)		SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		SRR037937(GSM510475)
293cand2. (cell line)		GSM510454(GSM510454)
newborn_rep10. (total RNA)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		GSM510455(GSM510455)
newborn_rep11. (total RNA)		SRR553582(SRX182788)
source: Brain. (Brain)		SRR038741(GSM527276)
small RNA-Seq. (brain)		SRR346413(SRX098254)
Global profiling of miRNA and the hairpin pre. (Heart)		SRR032477(GSM485235)
sRNA_activation_deep_sequencing. (uterus)		SRR116846(GSM678422)
Small RNA deep sequencing from mouse epididym. (epididymis)		SRR059776(GSM562838)
MEF_Dicer. (MEF)		SRR037938(GSM510476)
293Red. (cell line)		GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)
...............................................................................................................................................TCTGAAGGGCGCCTGTGCAGGA.....................................................................................221105.00105.0018.0016.006.008.008.003.001.004.00-1.001.00-2.002.002.00-1.002.00---1.00-1.00-1.002.00---2.00-1.00--1.001.001.00-1.001.00--------1.00----1.00-1.001.00-------1.00-1.00------------1.00----1.00--1.001.00---------1.00-1.00----1.00-------1.00-1.001.00-----1.00------
...............................................................................................................................................TCTGAAGGGCGCCTGTGCAG.......................................................................................20137.0037.00--1.00-2.0010.001.00-6.00-1.007.00--3.00------------1.00--1.001.001.00---------------------------------------------------------------------1.00----------1.00----------------
...............................................................................................................................................TCTGAAGGGCGCCTGTGCAGG......................................................................................21136.0036.0010.006.001.00-1.00-1.00--1.00----1.001.00------1.00---1.00---------------1.00-----1.00---1.00-----1.00-2.001.00-----------------------------1.00-1.00---------1.00-----1.001.00-------------------
...............................................................................................................................................TCTGAAGGGCGCCTGTGCAGGAA....................................................................................23112.00105.00-2.001.00------1.00---2.00-1.00-1.00-1.00-1.00--------------------------1.00-------------------------------------------1.00-------------------------------------
...............................................................................................................................................TCTGAAGGGCGCCTGTGCAGGAT....................................................................................23112.00105.00--1.00--------2.00-----------1.001.00---------1.001.00-1.00--------------------------------1.00-1.00-------------------------------1.00--------------------1.00----
..................................................................................................................................................................................CTGCCCTCTCTGCCCTTCCG....................................................2010.000.00--------------------------1.00--1.00----1.00-1.00----------------------------------1.00-----1.00----1.00-------1.00---1.00----------1.00------------------------
.................................................................................................................................................TGAAGGGCGCCTGTGCAGGA.....................................................................................20110.0010.00--1.001.00--1.00--2.001.00--------------1.00--------------1.00--------1.00--1.00-----------------------------------------------------------------------------
..............................................................................................................................................TTCTGAAGGGCGCCTGTGCAGGA.....................................................................................2319.009.00--2.001.00---1.00----1.001.00---------------------1.00---1.00--------------------------1.00---------------------------------------------------------------
.................................................................................................................................................TGAAGGGCGCCTGTGCAGGAC....................................................................................2118.008.00-1.003.00----2.00----1.00----------1.00----------------------------------------------------------------------------------------------------------
...............................................................................................................................................TCTGAAGGGCGCCTGTGCAGGAAT...................................................................................2418.00105.00-4.001.00----------------------1.00----------------------------1.00-1.00-------------------------------------------------------------------------
...................................................................................................................................................AAGGGCGCCTGTGCAGGACGC..................................................................................2117.007.00------2.001.00-1.00--1.001.00--------1.00-----------------------------------------------------------------------------------------------------------
.................................................................................................................................................TGAAGGGCGCCTGTGCAGGACT...................................................................................2217.008.00---------------1.00---3.00-1.00-----------------------------------1.001.00-----------------------------------------------------------------------
................................................................................................................................................CTGAAGGGCGCCTGTGCAGGA.....................................................................................2116.006.00--3.00----1.00-2.00------------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................TCTGAAGGGCGCCTGTGCAGA......................................................................................2115.0037.00-1.00---2.00-----------1.00----------------------------------------------------------------------------------1.00-----------------------------
...............................................................................................................................................TCTGAAGGGCGCCTGTGCAGGAGA...................................................................................2414.00105.00----3.00-----------1.00-----------------------------------------------------------------------------------------------------------------
....................................................................................................................................................AGGGCGCCTGTGCAGGA.....................................................................................1714.004.00------------------3.00--------------------------------------------------------1.00------------------------------------------------------
.................................................................................................................................................TGAAGGGCGCCTGTGCAGGACC...................................................................................2214.008.00------1.00-------------------------------3.00-------------------------------------------------------------------------------------------
..........................................................................................................................................................................TCAGCTTCCTGCCCTCTCTGCCCTCCTATT..................................................304.000.00----------------------------4.00-----------------------------------------------------------------------------------------------------
.................................................................................................................................................TGAAGGGCGCCTGTGCAGGACGC..................................................................................2314.004.00---1.00--3.00---------------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................TCTGAAGGGCGCCTGTGCAGGAAA...................................................................................2414.00105.00--1.00------1.00----------------------1.00------------1.00------------------------------------------------------------------------------------
...............................................................................................................................................TCTGAAGGGCGCCTGTGCAT.......................................................................................203.000.00----------1.00----1.00---------------1.00--------------------------------------------------------------------------------------------------
.................................................................................................................................................TGAAGGGCGCCTGTGCAGGACG...................................................................................2213.003.00---1.00------------------------------1.00----------1.00------------------------------------------------------------------------------------
...................................................................................................................................................AAGGGCGCCTGTGCAGGACG...................................................................................2013.003.00----------1.00-----------------------------1.00-------------------------------------------------------------------1.00---------------------
...............................................................................................................................................TCTGAAGGGCGCCTGTGCAGGAG....................................................................................2313.00105.00-2.00-------------------------------------1.00------------------------------------------------------------------------------------------
.................................................................................................................................................TGAAGGGCGCCTGTGCAGGACA...................................................................................2213.008.00-------------------1.00----------------1.00----------------------------------------------------------------------1.00----------------------
...............................................................................................................................................TCTGAAGGGCGCCTGTGCAGT......................................................................................2113.0037.00----------1.00------1.00----------------------------------------------1.00-----------------------------------------------------------------
..............................................................................................................................................TTCTGAAGGGCGCCTGTGCAGGAA....................................................................................2413.009.00----2.00--1.00--------------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................TCTGAAGGGCGCCTGTGC.........................................................................................1813.003.00-3.00--------------------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................TCTGAAGGGCGCCTGTGCAAGTA....................................................................................233.000.00-3.00--------------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................CCTGCCCTCTCTGCCCTTCCG....................................................213.000.00------3.00---------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................AAGGGCGCCTGTGCAGGACGCA.................................................................................2212.007.00-------------------------------1.00---------------------------------------------------1.00----------------------------------------------
...............................................................................................................................................................................TTCCTGCCCTCTCTGCCCTCC......................................................2112.002.00------------------2.00---------------------------------------------------------------------------------------------------------------
.....................................................................................................................................CCCGGTATTTTCTGAGT....................................................................................................172.000.00---------------------------------2.00------------------------------------------------------------------------------------------------
..................................................................................................................................................GAAGGGCGCCTGTGCAGGACGC..................................................................................2212.002.00---1.00---1.00--------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................TGAAGGGCGCCTGTGCAGGAAA...................................................................................2212.0010.00------------------------------------------1.00----------------------------------------------------------------------------1.00----------
..............................................................................................................................................TTCTGAAGGGCGCCTGTGCAG.......................................................................................2112.002.00---------1.00-----------1.00------------------------------------------------------------------------------------------------------------
................................................................................................................................................CTGAAGGGCGCCTGTGCAGGAT....................................................................................2212.006.00------------------------------------------------------------------------------------1.00------------------------------------------1.00--
...............................................................................................................................................TCTGAAGGGCGCCTGTGCAGGAAG...................................................................................2412.00105.00---1.00-------------------------------------------1.00----------------------------------------------------------------------------------
.............................TCTTCATGAAAGGAGGGAGGAGTCTG...................................................................................................................................................................................................2612.002.00----------------------2.00-----------------------------------------------------------------------------------------------------------
...................................................................................................................................................AAGGGCGCCTGTGCAGGACT...................................................................................201.000.00----------1.00-----------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................TGAAGGGCGCCTGTGCAGGACTAT.................................................................................2411.008.00--------------------------------------------------------------------------------------------------1.00-------------------------------
...............................................................................................................................................................................TTCCTGCCCTCTCTGCCCTCCTATT..................................................251.000.00-------------------------------------------------------------------------------------------------------------------------1.00--------
...............................................................................................................................................TCTGAAGGGCGCCTGTGCAGGTTT...................................................................................2411.0036.00-----------------------------------------------------------------------------------------------1.00----------------------------------
...............................................................................................................................................TCTGAAGGGCGCCTGTGCATGA.....................................................................................221.000.00--------------------------------------------------------------1.00-------------------------------------------------------------------
...............................................................................................................................................TCTGAAGGGCGCCTGTGCAGAAA....................................................................................2311.0037.00----------------------------------------------------------------------------------------------------------------------------1.00-----
.................................................................................................................................................TGAAGGGCGCCTGTGCAG.......................................................................................1811.001.00--------------------------------------------------------------------------------------------------------------------------1.00-------
...............................................................................................................................................................GCAGGACGCGCTCAGCGA.........................................................................181.000.00------------------------------------------------------------------------------------------------------------------------1.00---------
...............................................................................................................................................TCTGAAGGGCGCCTGTGCAGGT.....................................................................................2211.0036.00----------------------------------------------1.00-----------------------------------------------------------------------------------
...............................................................................................................................................TCTGAAGGGCGCCTGTGAA........................................................................................191.000.00------------------------1.00---------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................GCGAGACTCCGCGGGCGT.............181.000.00--------------------------------------------1.00-------------------------------------------------------------------------------------
...............................................................................................................................................TCTGAAGGGCGCCTGTGCATG......................................................................................211.000.00---------------------1.00------------------------------------------------------------------------------------------------------------
..............................................................................................................................................TTCTGAAGGGCGCCTGTGCAGGACGC..................................................................................2611.001.00----------------------1.00-----------------------------------------------------------------------------------------------------------
..............................................................................................................................................TTCTGAAGGGCGCCTGTGCAT.......................................................................................211.000.00---------------1.00------------------------------------------------------------------------------------------------------------------
....................................................................................................................................................AGGGCGCCTGTGCAGGACGC..................................................................................2011.001.00-----------------------------------------------1.00----------------------------------------------------------------------------------
.................................................................................................................................................TGAAGGGCGCCTGTGCAGA......................................................................................1911.001.00--1.00-------------------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................TCTGAAGGGCGCCTGTGCAGGC.....................................................................................2211.0036.00-------------------------------------------------------------1.00--------------------------------------------------------------------
................................................................................................................................................CTGAAGGGCGCCTGTGCAGGTAT...................................................................................231.000.00----------1.00-----------------------------------------------------------------------------------------------------------------------
.............................................................................................................................................TTTCTGAAGGGCGCCTGTGCAGGA.....................................................................................2411.001.00----------------------------------------------------------------------------1.00-----------------------------------------------------
..............................................................................................................................................TTCTGAAGGGCGCCTGTGCAGGATTT..................................................................................2611.009.00----------1.00-----------------------------------------------------------------------------------------------------------------------
................................................................................................................................................CTGAAGGGCGCCTGTGCAG.......................................................................................1911.001.00------------1.00---------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................CTGCCCTCTCTGCCCTCCTCAG..................................................2211.001.00------------------------1.00---------------------------------------------------------------------------------------------------------
...............................................................................................................................................TCTGAAGGGCGCCTGTGCAGGACGCGC................................................................................2711.001.00-------------------------------------------------------1.00--------------------------------------------------------------------------
................................................................................................................................................CTGAAGGGCGCCTGTGCAGGAAA...................................................................................2311.006.00------------1.00---------------------------------------------------------------------------------------------------------------------
.........................................................................................................................................................GCCTGTGCAGGACGCACCC..............................................................................191.000.00----------------------------------------------------------------------------------------------------------------1.00-----------------
...........................................................................................................................AGATGGGAGCCCCGGGGA.............................................................................................................181.000.00------------------------1.00---------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................................TCAGTGCTGTAACCTCAGCGTAAGCGA...........................2711.001.00---------------------------1.00------------------------------------------------------------------------------------------------------
..............................................................................................................................................TTCTGAAGGGCGCCTGTG..........................................................................................1811.001.00------------------------------------------------------------------------------------------------1.00---------------------------------
...............................................................................................................................................TCTGAAGGGCGCCTGTGCAGGATTT..................................................................................2511.00105.00----------1.00-----------------------------------------------------------------------------------------------------------------------
................................................................................................................................................CTGAAGGGCGCCTGTGCA........................................................................................1811.001.00--------------------------------------------------1.00-------------------------------------------------------------------------------
...............................................................................................................................................TCTGAAGGGCGCCTGTGCAGGATT...................................................................................2411.00105.00---------------------------------------------------------------------------------1.00------------------------------------------------
...............................................................................................................................................TCTGAAGGGCGCCTGTGCAGGAGAAT.................................................................................2611.00105.00---1.00------------------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................TCTGAAGGGCGCCTGTGCAGAA.....................................................................................2211.0037.00--------------------------------------------------------------1.00-------------------------------------------------------------------
...............................................................................................................................................TCTGAAGGGCGCCTGTGCAGGTT....................................................................................2311.0036.00-------------------------1.00--------------------------------------------------------------------------------------------------------
................................................................................................................................................CTGAAGGGCGCCTGTGCAGGAAT...................................................................................2311.006.00--1.00-------------------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................TCTGAAGGGCGCCTGTGCAA.......................................................................................201.000.00---------------1.00------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................ATTTTCTGAAGGGCGCCT.............................................................................................1811.001.00-----------------------1.00----------------------------------------------------------------------------------------------------------
.................................................................................................................................................TGAAGGGCGCCTGTGCAGGACGA..................................................................................2311.003.00-------------1.00--------------------------------------------------------------------------------------------------------------------
................................................................................................................................................CTGAAGGGCGCCTGTGCAGGAAAAA.................................................................................2511.006.00-------------------------------------------------------------------------1.00--------------------------------------------------------
......................................AAGGAGGGAGGAGTCTGG..................................................................................................................................................................................................1811.001.00-------------------------------------------1.00--------------------------------------------------------------------------------------
.......................................................................................................GTGGGAAGCGTCTTTGTGG................................................................................................................................1911.001.00---------------------------------------------------------------------------------------1.00------------------------------------------
........................................................................................................................................................................................................TGCTGTAACCTCAGCGTAAGCGAGACTCC.....................2911.001.00-------------------------------------------------------------------------------------------------1.00--------------------------------
...............................................................................................................................................................................TTCCTGCCCTCTCTGCCCTC.......................................................2011.001.00---------------------------------------------------------------------1.00------------------------------------------------------------
...............................................................................................................................................TCTGAAGGGCGCCTGTGCAGGAGT...................................................................................2411.00105.00---1.00------------------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................................................GACTCCGCGGGACCCCTT.........1811.001.00---------------------------------1.00------------------------------------------------------------------------------------------------
...........................................................................................................GAAGCGTCTTTGTGGGTC.............................................................................................................................181.000.00--------------------------------------------------------------------1.00-------------------------------------------------------------
.................................................................................................................................................TGAAGGGCGCCTGTGCAGGAAT...................................................................................2211.0010.00--------------------------------------------------1.00-------------------------------------------------------------------------------
..............................................................................................................................................TTCTGAAGGGCGCCTGTGCAGGATC...................................................................................2511.009.00---1.00------------------------------------------------------------------------------------------------------------------------------
..............................................................................................................................................TTCTGAAGGGCGCCTGTGCAGGAG....................................................................................2411.009.00----------------------------------------------1.00-----------------------------------------------------------------------------------
..............................................................................................................................................TTCTGAAGGGCGCCTGTGCAGA......................................................................................2211.002.00---1.00------------------------------------------------------------------------------------------------------------------------------
..............................................................AGTGACCAGAATCAGTGATGGATTAAGAGGCA............................................................................................................................................................3211.001.00----------------1.00-----------------------------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................................AAGCGAGACTCCGCGGGAC..............1911.001.00-----------------------1.00----------------------------------------------------------------------------------------------------------
........................GTGTATCTTCATGAAAGGAGGGAGGA........................................................................................................................................................................................................2611.001.00-------------------------------------1.00--------------------------------------------------------------------------------------------
...............................................................................................................................................................................TTCCTGCCCTCTCTGCCCTCCTCA...................................................2411.001.00------1.00---------------------------------------------------------------------------------------------------------------------------
.GTGGGAGTCAGAAAGAGGAGG....................................................................................................................................................................................................................................2111.001.00------------------------------------------------------------------------------------------------------------------------------1.00---
...........................................................................................................................................................................................................TGTAACCTCAGCGTAAGCGAGACTCAGCG..................291.000.00--------------------------------------------------------------------------------------1.00-------------------------------------------
......................................................................................................................GTGGCAGATGGGAGCCCCGGTATTTT..........................................................................................................2611.001.00-------------------------------------------------------------------------------------------------------------------1.00--------------
..................................................................................................................................................GAAGGGCGCCTGTGCAGGAATA..................................................................................221.000.00-------------------------------------------------------------------------------1.00--------------------------------------------------
..............................................................................................................................................TTCTGAAGGGCGCCTGTGCAGGAAT...................................................................................2511.009.00---------1.00------------------------------------------------------------------------------------------------------------------------
..............................................................................................................................................TTCTGAAGGGCGCCTGTGAA........................................................................................2011.001.00----------------1.00-----------------------------------------------------------------------------------------------------------------
....................................................................................................................................................AGGGCGCCTGTGCAGG......................................................................................1620.500.50---------------------------------------------------------------------------------------------------------------------------------0.50

Antisense strand
AGTGGGAGTCAGAAAGAGGAGGGAGTGTATCTTCATGAAAGGAGGGAGGAGTCTGGTAAGAGAGTGACCAGAATCAGTGATGGATTAAGAGGCAAAACAGCTGGTGGGAAGCGTCTTTGTGGCAGATGGGAGCCCCGGTATTTTCTGAAGGGCGCCTGTGCAGGACGCGCTCAGCTTCCTGCCCTCTCTGCCCTCCTCAGTGCTGTAACCTCAGCGTAAGCGAGACTCCGCGGGACCCCTTAGGATTTAA
................................................................................................................................................((((((((((.....((((((.((.....)).))))))......))))))..))))..................................................
..........................................................................................................................................139..........................................................200................................................
SizePerfect hitTotal NormPerfect NormmjTestesWT4()
Testes Data. (testes)		mjTestesWT3()
Testes Data. (testes)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		mjLiverKO3()
Liver Data. (Zcchc11 liver)		mjLiverWT1()
Liver Data. (liver)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		mjTestesWT1()
Testes Data. (testes)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		mjLiverKO1()
Liver Data. (Zcchc11 liver)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)		mjTestesKO6()
Testes Data. (Zcchc11 testes)		SRR014234(GSM319958)
Ovary total. (ovary)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		mjTestesWT2()
Testes Data. (testes)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR685340(GSM1079784)
Small RNAs (15-50 nts in length) from immorta. (dicer cell line)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)		SRR059770(GSM562832)
Treg_Dicer. (spleen)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		SRR073954(GSM629280)
total RNA. (blood)		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)		SRR402761(SRX117944)
source: ES E14 male cells. (ESC)		SRR345204(SRX097265)
source: size fractionated RNA from mouse hipp. (brain)		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)		GSM416732(GSM416732)
MEF. (cell line)		SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		GSM510456(GSM510456)
newborn_rep12. (total RNA)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR037921(GSM510459)
e12p5_rep3. (embryo)		GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		mjLiverWT3()
Liver Data. (liver)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR059766(GSM562828)
DN3_Drosha. (thymus)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR032476(GSM485234)
sRNA_delayed_deep_sequencing. (uterus)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)		SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)		SRR014233(GSM319957)
16.5 dpc MIWI2. (miwi2 testes)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		SRR037920(GSM510458)
e12p5_rep2. (embryo)		SRR059765(GSM562827)
DN3_control. (thymus)		SRR014230(GSM319954)
10 dpp Dnmt3L-KO MILI. (mili testes)		SRR038740(GSM527275)
small RNA-Seq. (dicer brain)		SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)		SRR042444(GSM539836)
mouse pre B cells [09-002]. (b cell)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR685339(GSM1079783)
Small RNAs (15-50 nts in length) from immorta. (cell line)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR029041(GSM433293)
6w_homo_tdrd6-KO. (tdrd6 testes)		SRR390299(GSM849857)
cell line: NIH-3T3cell type: fibroblastip ant. (ago2 fibroblast)		SRR037914(GSM510451)
newborn_rep7. (total RNA)		GSM475281(GSM475281)
total RNA. (testes)		mjTestesKO5()
Testes Data. (Zcchc11 testes)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		Ago2IP504(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		SRR014229(GSM319953)
10 dpp MILI. (mili testes)		SRR059775(GSM562837)
MEF_Drosha. (MEF)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		GSM510444(GSM510444)
brain_rep5. (brain)		SRR037899(GSM510435)
ovary_rep4. (ovary)		SRR059774(GSM562836)
MEF_control. (MEF)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		SRR042445(GSM539837)
mouse immature B cells [09-002]. (b cell)		SRR065049(SRR065049)
Tissue-specific Regulation of Mouse MicroRNA . (liver)		SRR346415(SRX098256)
source: Testis. (Testes)		SRR206939(GSM723280)
other. (brain)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)		SRR037925(GSM510463)
e9p5_rep3. (embryo)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		Ago2IP517(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)		SRR346414(SRX098255)
Global profiling of miRNA and the hairpin pre. (Spleen)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		GSM510452(GSM510452)
newborn_rep8. (total RNA)		SRR029123(GSM416611)
NIH3T3. (cell line)		SRR039610(GSM527274)
small RNA-Seq. (brain)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		RuiDGCR8KO(Rui)
DGCR8-dependent microRNA biogenesis is essent. (dgcr8 skin)		SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR042465(GSM539857)
mouse CD4+ T cells (spleen) [09-002]. (spleen)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR042446(GSM539838)
mouse mature B cells (spleen) replicate 1 [09-002]. (b cell)		SRR037910(GSM510447)
newborn_rep3. (total RNA)		SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		SRR037937(GSM510475)
293cand2. (cell line)		GSM510454(GSM510454)
newborn_rep10. (total RNA)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		GSM510455(GSM510455)
newborn_rep11. (total RNA)		SRR553582(SRX182788)
source: Brain. (Brain)		SRR038741(GSM527276)
small RNA-Seq. (brain)		SRR346413(SRX098254)
Global profiling of miRNA and the hairpin pre. (Heart)		SRR032477(GSM485235)
sRNA_activation_deep_sequencing. (uterus)		SRR116846(GSM678422)
Small RNA deep sequencing from mouse epididym. (epididymis)		SRR059776(GSM562838)
MEF_Dicer. (MEF)		SRR037938(GSM510476)
293Red. (cell line)		GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)
....................................................................................................................................................................................GCCCTCTCTGCCCTCCTCAGTGCTGTA........................................... 27113.0013.007.001.00------5.00-------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................CCCTCTCTGCCCTCCTCAGTGCTGTA........................................... 2615.005.005.00---------------------------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................GCCCTCTCTGCCCTCCTCCC.................................................. 204.000.00---------------------------------------------------2.00-2.00----------------------------------------------------------------------------
......................................................................................................................................................................................CCTCTCTGCCCTCCTCAGTGCTGTA........................................... 2512.002.00---------------------------1.00-----------------------------------1.00------------------------------------------------------------------
......................................................GGTAAGAGAGTGACCAGAATCAGTGA.......................................................................................................................................................................... 2611.001.00----------------1.00-----------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................TCCTGCCCTCTCTGCCTAA....................................................... 191.000.00-------------------------------------------1.00--------------------------------------------------------------------------------------
.............................................................................................................................................................................................GCCCTCCTCAGTGCTGTAACCTCACCA.................................. 271.000.00--------------------1.00-------------------------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................................AAGCGAGACTCCGCGGGACCCCTTAT....... 261.000.00--------------------1.00-------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................CCCTCCTCAGTGCTGTAACCTCAAA................................... 251.000.00---------------------------1.00------------------------------------------------------------------------------------------------------
........................................................................................................TGGGAAGCGTCTTTGTGGCAGATGGGA....................................................................................................................... 2711.001.00----------------1.00-----------------------------------------------------------------------------------------------------------------
.....................................................................................................TGGTGGGAAGCGTCTTTGTGGCAGA............................................................................................................................ 2511.001.00-----------------------------1.00----------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................AGCGAGACTCCGCGGGACCCCTTAGGA..... 2711.001.00------------------------------------------------------------------------------1.00---------------------------------------------------
............................................GGAGGAGTCTGGTAATCTT........................................................................................................................................................................................... 191.000.00-----------------------------------------1.00----------------------------------------------------------------------------------------
.........................................................................TCAGTGATGGATTAAGAGGCAAAACA....................................................................................................................................................... 2611.001.00--------------------1.00-------------------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................TCTGCCCTCCTCAGTGCTGTAACCT....................................... 2511.001.00---------------------------------------------------------------1.00------------------------------------------------------------------
.....................................................................................................TGGTGGGAAGCGTCTTTGTGGCAGAA........................................................................................................................... 261.000.00--------------------1.00-------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................GCCCTCTCTGCCCTCCTCCCC................................................. 211.000.00--------------------------------------------1.00-------------------------------------------------------------------------------------
..........................................................................................................................................................................................TCTGCCCTCCTCAGTGCTGTAACCTCA..................................... 2711.001.00-----------------------------------------------------------1.00----------------------------------------------------------------------
....................................................................................................................................................................................GCCCTCTCTGCCCTCCTCCCT................................................. 211.000.00--------------------------------------------------------------------------------------------------------------------------------1.00-
........................................................................................................................................................................................................TGCTGTAACCTCAGCGTAAGCGATTG........................ 261.000.00--------------------1.00-------------------------------------------------------------------------------------------------------------
......................................................................................AAGAGGCAAAACAGCTTTA................................................................................................................................................. 191.000.00----------------------------------------------------------------------------------------------------------------------1.00-----------
..................................................................................................................................................................................................CCTCAGTGCTGTAACCTCAGCGTAA............................... 2511.001.00-----------------------------1.00----------------------------------------------------------------------------------------------------
................................................................................................................................................................................................CTCCTCAGTGCTGTAACAG....................................... 191.000.00-----------------------------------------------------------1.00----------------------------------------------------------------------
.....................................................................................................................................................................CGCGCTCAGCTTCCTGAG................................................................... 181.000.00-----------------------------------------1.00----------------------------------------------------------------------------------------
.................................................................................................................................................................................................TCCTCAGTGCTGTAACCTCAGCGTAA............................... 2611.001.00-------------------------------------------------------1.00--------------------------------------------------------------------------
...............................................................................................................................................................................................CCTCCTCAGTGCTGTTAGT........................................ 191.000.00--------------------------------------------------------------------------1.00-------------------------------------------------------
...................................................................................................................................................................GACGCGCTCAGCT.......................................................................... 1370.140.14-----------------------------------------0.14----------------------------------------------------------------------------------------