ID: uc009ese.1
GENE: Tm7sf3(1)
chr6:146554763-146555012-


(1)
AGO.mut 		(2)
AGO1.ip 		(5)
AGO2.ip 		(1)
AGO3.ip 		(1)
B-CELL 		(22)
BRAIN 		(3)
CELL-LINE 		(2)
DCR.mut 		(4)
EMBRYO 		(7)
ESC 		(1)
FIBROBLAST 		(1)
HEART 		(1)
KIDNEY 		(3)
LIVER 		(3)
LYMPH 		(7)
OTHER 		(1)
OTHER.mut 		(2)
PANCREAS 		(1)
PIWI.mut 		(3)
SKIN 		(1)
SPLEEN 		(5)
TESTES 		(2)
THYMUS 		(1)
UTERUS

Sense strand
CGGGGGAGGGGAGGACAGGAACGAATATGATAAAAATACACTGTATGAAACTCTCACAGAATAAAAAGCAGACCCACTGTGGGCAAGGAAGGTTGTTTTACCATAGCCCTTGTCAGTGCTGAGACAGCACGAGGCCACCGAGAGAGCTGGAGGCTGCTCTCATTCCAAGGGTGATACCTGTCTCCTCTGCTCTCCCGCAGTTGAACATCCTGGCTTGTGGAGTCGTGGGCTCCTACTCCGTGGTGTTGGC
..........................................................................................................................................((.((((((.((((((.....(((((.....))))).....))))))...)))))).)).....................................................
...................................................................................................................................132.................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)		SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR095853(SRX039174)
sequencing of miRNA from wild type and diseas. (heart)		SRR206939(GSM723280)
other. (brain)		SRR042474(GSM539866)
mouse embryonic stem cells [09-002]. (ESC)		SRR042484(GSM539876)
mouse salivary gland tissue [09-002]. (salivary gland)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		SRR394084(GSM855970)
background strain: C57BL6/SV129cell type: KRa. (dicer cell line)		SRR059766(GSM562828)
DN3_Drosha. (thymus)		SRR206941(GSM723282)
other. (brain)		SRR065059(SRR065059)
Tissue-specific Regulation of Mouse MicroRNA . (pancreas)		SRR345206(SRX097267)
source: size fractionated RNA from mouse hipp. (brain)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		SRR042462(GSM539854)
mouse macrophages [09-002]. (bone marrow)		SRR065052(SRR065052)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR029123(GSM416611)
NIH3T3. (cell line)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)		SRR206942(GSM723283)
other. (brain)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)		GSM361395(GSM361395)
CGNP_P6_wt_rep2. (brain)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		SRR685340(GSM1079784)
Small RNAs (15-50 nts in length) from immorta. (dicer cell line)		SRR059765(GSM562827)
DN3_control. (thymus)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR042477(GSM539869)
mouse brain tissue [09-002]. (brain)		GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)		GSM361402(GSM361402)
CGNP_P6_p53--_Ink4c--_rep5. (brain)		SRR032476(GSM485234)
sRNA_delayed_deep_sequencing. (uterus)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		SRR042475(GSM539867)
mouse embryonic fibroblast cells [09-002]. (fibroblast)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR306537(GSM750580)
19-24nt. (ago2 brain)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR553604(SRX182810)
source: Spermatocytes. (Spermatocytes)		SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR065058(SRR065058)
Tissue-specific Regulation of Mouse MicroRNA . (pancreas)		GSM314553(GSM314553)
ESC dcr (Illumina). (ESC)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)
........................................................................................................................................ACCGAGAGAGCTGGAGGCTGCT............................................................................................2219.009.001.001.00-------------1.00-2.00-----------1.00--1.00-----------------1.001.00---------------
........................................................................................................................................ACCGAGAGAGCTGGAGGCTGC.............................................................................................2118.008.00--------2.00-------------2.00---1.00---1.00--1.00----------------------1.00----------
........................................................................................................................................ACCGAGAGAGCTGGAGGCTGCTA...........................................................................................2314.009.00---------------1.00---2.00-----------------1.00-----------------------------
........................................................................................................................................ACCGAGAGAGCTGGAGGCTGCAA...........................................................................................2313.008.001.001.00-1.00---------------------------------------------------------------
........................................................................................................................................ACCGAGAGAGCTGGAGGCT...............................................................................................1913.003.00-3.00-----------------------------------------------------------------
..................................................................................................................................................................................TGTCTCCTCTGCTCTCCCGCAGT.................................................2313.003.00-----------------------------------1.00-----1.00---------------1.00---------
................................................................................................................................................................................CCTGTCTCCTCTGCTCTCCCGC....................................................2213.003.00--1.00-----------------1.00-------1.00--------------------------------------
........................................................................................................................................ACCGAGAGAGCTGGAGGCTGCTT...........................................................................................2313.009.00----------------1.00--------------1.00--------------------------1.00--------
........................................................................................................................................ACCGAGAGAGCTGGAGGCTGCTTT..........................................................................................2412.009.00-------1.00-----------------------------------------1.00-----------------
........................................................................................................................................ACCGAGAGAGCTGGAGGCTG..............................................................................................2012.002.00---------------------2.00---------------------------------------------
..................................................................................................................................................................................TGTCTCCTCTGCTCTCCCGCAG..................................................2212.002.00--------------1.00---------------------------------------1.00------------
.....................................................................................................................................................................................................................CTTGTGGAGTCGTGGGCTCCTAC..............2312.002.00------------------2.00------------------------------------------------
..........................................................................................................................................CGAGAGAGCTGGAGGCTGCT............................................................................................2012.002.00----------------------------------------1.00--1.00-----------------------
..........................................................................................................................GACAGCACGAGGCCACCAGCG...........................................................................................................212.000.00--------------------------------------------1.00-------1.00--------------
...........................................................................................................................................GAGAGAGCTGGAGGCTGCT............................................................................................1912.002.00-------------------------2.00-----------------------------------------
..................................................................................................................................................................................................CCGCAGTTGAACAT..........................................1412.002.00----------1.00----------------1.00---------------------------------------
........................................................................................................................................ACCGAGAGAGCTGGAGGCTGCTATAA........................................................................................2612.009.00----1.00--1.00-----------------------------------------------------------
........................................................................................................................................ACCGAGAGAGCTGGAGGCTGCTAT..........................................................................................2412.009.00----1.00-------1.00------------------------------------------------------
..............ACAGGAACGAATATGAAT..........................................................................................................................................................................................................................181.000.00------------------------------------------1.00------------------------
........................................................................................................................................ACCGAGAGAGCTGGAGGCTTT.............................................................................................2111.003.00---1.00---------------------------------------------------------------
........................................................................................................................................................................................................TTGAACATCCTGGCTTGTGGAGTCGTGGG.....................2911.001.00------------------------------------------------------------1.00------
...............................................................................TGGGCAAGGAAGGTTTTC.........................................................................................................................................................181.000.00----------1.00--------------------------------------------------------
.......................................................................................................................................CACCGAGAGAGCTGGAGGCTGCT............................................................................................2311.001.00-------------1.00-----------------------------------------------------
.............................................................................................................................................GAGAGCTGGAGGCTGTAG...........................................................................................181.000.00----------------------------------1.00--------------------------------
...................................ATACACTGTATGAAACTGTAT..................................................................................................................................................................................................211.000.00----------1.00--------------------------------------------------------
............................................................................................................................................................................................................................AGTCGTGGGCTCCTACT.............1711.001.00----------------------------------------------1.00--------------------
........................................................................................................................................ACCGAGAGAGCTGGAGGCTGTA............................................................................................2211.002.00--------------1.00----------------------------------------------------
................................................................................................................................................................................CCTGTCTCCTCTGCTCTCCCGCAGT.................................................2511.001.00--1.00----------------------------------------------------------------
......................................................................................................................................................................................................................................TCCTACTCCGTGGTGTTGG.1911.001.00------------1.00------------------------------------------------------
........................................................................................................................................ACCGAGAGAGCTGGAGGCTGCAAT..........................................................................................2411.008.00--------------------------------------1.00----------------------------
.................................................................................................................................................................................CTGTCTCCTCTGCTCTCCCGCAGT.................................................2411.001.00------------------------1.00------------------------------------------
.................................................................................................................................................................................CTGTCTCCTCTGCTCTCCCGCTT..................................................2311.001.00-------------------------------------------------------------1.00-----
........................................................................................................................................ACCGAGAGAGCTGGAGGAC...............................................................................................1911.001.00---1.00---------------------------------------------------------------
........................................................................................................................................ACCGAGAGAGCTGGAGGCTGTAA...........................................................................................2311.002.001.00------------------------------------------------------------------
.......................................................................................................................................CACCGAGAGAGCTGGAGGCTGTAG...........................................................................................2411.001.00-----------------------------------------------------------1.00-------
......................................................................................................................................................................................................................TTGTGGAGTCGTGGGCT...................1711.001.00-----------1.00-------------------------------------------------------
........................................................................................................................................................................................................TTGAACATCCTGGCTTGTGG..............................2011.001.00---------1.00---------------------------------------------------------
.................................................................................................................................................................................CTGTCTCCTCTGCTCTCCCGC....................................................2111.001.00-----------------------1.00-------------------------------------------
..................................................................................................................................................................................TGTCTCCTCTGCTCTCCCGCAGA.................................................2311.002.00---------1.00---------------------------------------------------------
.................................................................................................................................................................................................................CTGGCTTGTGGAGTCGTGGGCTCC.................2411.001.00------------------------------------------------1.00------------------
.......................................................................................................................................CACCGAGAGAGCTGGAGGCTG..............................................................................................2111.001.00--------------------------1.00----------------------------------------
..........................................................................................................................................................................................................GAACATCCTGGCTTGTGGAGT...........................2111.001.00------1.00------------------------------------------------------------
.................................................................................................................................................................................CTGTCTCCTCTGCTCTCCCGCAG..................................................2311.001.00-----1.00-------------------------------------------------------------
............................................................................................................................................AGAGAGCTGGAGGCTGGGG...........................................................................................191.000.00-----------------------1.00-------------------------------------------
........................................................................................................................................ACCGAGAGAGCTGGAGGCTGAAGA..........................................................................................2411.002.00------1.00------------------------------------------------------------
........................................................................................................................................ACCGAGAGAGCTGGAGG.................................................................................................1711.001.00--1.00----------------------------------------------------------------
........................................................................................................................................................................................................................GTGGAGTCGTGGGC....................1431.001.00---------------------------0.67-------------------------------------0.33-
........................................................................................................................................ACCGAGAGAGCTGGAGGCTGCTTA..........................................................................................2411.009.00------------------------1.00------------------------------------------
.................................................................................................................................................GCTGGAGGCTGCTCTCATTCC....................................................................................2111.001.00-----1.00-------------------------------------------------------------
...............................................................................................................................................................................ACCTGTCTCCTCTGCTCTCCCGCT...................................................241.000.00-----------1.00-------------------------------------------------------
...............................................................................................................................................................................ACCTGTCTCCTCTGCTCTCCCGCAT..................................................251.000.00--1.00----------------------------------------------------------------
........................................................................................................................................ACCGAGAGAGCTGGAGGCTGT.............................................................................................2111.002.00------1.00------------------------------------------------------------
................................................................................................................................................................................CCTGTCTCCTCTGCTCTCCCGCAG..................................................2411.001.00-----1.00-------------------------------------------------------------
........................................................................................................................................ACCGAGAGAGCTGGAGGCTGCTAAA.........................................................................................2511.009.00----------------1.00--------------------------------------------------
........................................................................................................................................ACCGAGAGAGCTGGAGGCTGCTAAT.........................................................................................2511.009.001.00------------------------------------------------------------------
........................................................................................................................................ACCGAGAGAGCTGGAGGCTGCTTTAA........................................................................................2611.009.00-------1.00-----------------------------------------------------------
.......................................................................................................................................CACCGAGAGAGCTGGAGGCTGCTAT..........................................................................................2511.001.00-------------1.00-----------------------------------------------------
.....GAGGGGAGGACAGGACGC...................................................................................................................................................................................................................................181.000.00--------1.00----------------------------------------------------------
..............................................................................................................................................................................TACCTGTCTCCTCTGCTCTCCCGC....................................................2411.001.00------------------------------------1.00------------------------------
.................................................................................................................................................GCTGGAGGCTGCTCTTCC.......................................................................................181.000.00---------1.00---------------------------------------------------------
..................................................................................................................................................................................TGTCTCCTCTGCTCTCCCGCAGTT................................................2411.001.00---------------------------------------1.00---------------------------
........................................................................................................................................ACCGAGAGAGCTGGAGGCTGCG............................................................................................2211.008.00-------------------------------------------------------1.00-----------
.........................................................................................................................................CCGAGAGAGCTGGAGGCTGCTAA..........................................................................................231.000.00---------------------------------------------1.00---------------------
.........................................................................................................................................................................................................TGAACATCCTGGCTTGTGGAGTCGTGG......................2711.001.00--------------------1.00----------------------------------------------
........................................................................................................................................ACCGAGAGAGCTGGAGGCTGCTAA..........................................................................................2411.009.001.00------------------------------------------------------------------
........................................................................................................................................ACCGAGAGAGCTGGAGGCTGCTCAG.........................................................................................251.000.00--------------------------------------------------------------1.00----
........................................................................................................................................ACCGAGAGAGCTGGAGGCTGCTTTAT........................................................................................2611.009.001.00------------------------------------------------------------------
........................................................................................................................................ACCGAGAGAGCTGGAGGCTGCTCAA.........................................................................................251.000.00----1.00--------------------------------------------------------------
.............................................................................................................................................................................ATACCTGTCTCCTCTGCT...........................................................1820.500.50---------------------------------------------------------------0.50---
........................................................................................................................................................................................................TTGAACATCCTGGCTT..................................1620.500.50-----------0.50-------------------------------------------------------
..........................ATGATAAAAATACACTGTAT............................................................................................................................................................................................................2050.200.20-----------------------------0.20-------------------------------------

Antisense strand
CGGGGGAGGGGAGGACAGGAACGAATATGATAAAAATACACTGTATGAAACTCTCACAGAATAAAAAGCAGACCCACTGTGGGCAAGGAAGGTTGTTTTACCATAGCCCTTGTCAGTGCTGAGACAGCACGAGGCCACCGAGAGAGCTGGAGGCTGCTCTCATTCCAAGGGTGATACCTGTCTCCTCTGCTCTCCCGCAGTTGAACATCCTGGCTTGTGGAGTCGTGGGCTCCTACTCCGTGGTGTTGGC
..........................................................................................................................................((.((((((.((((((.....(((((.....))))).....))))))...)))))).)).....................................................
...................................................................................................................................132.................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)		SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR095853(SRX039174)
sequencing of miRNA from wild type and diseas. (heart)		SRR206939(GSM723280)
other. (brain)		SRR042474(GSM539866)
mouse embryonic stem cells [09-002]. (ESC)		SRR042484(GSM539876)
mouse salivary gland tissue [09-002]. (salivary gland)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		SRR394084(GSM855970)
background strain: C57BL6/SV129cell type: KRa. (dicer cell line)		SRR059766(GSM562828)
DN3_Drosha. (thymus)		SRR206941(GSM723282)
other. (brain)		SRR065059(SRR065059)
Tissue-specific Regulation of Mouse MicroRNA . (pancreas)		SRR345206(SRX097267)
source: size fractionated RNA from mouse hipp. (brain)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		SRR042462(GSM539854)
mouse macrophages [09-002]. (bone marrow)		SRR065052(SRR065052)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR029123(GSM416611)
NIH3T3. (cell line)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)		SRR206942(GSM723283)
other. (brain)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)		GSM361395(GSM361395)
CGNP_P6_wt_rep2. (brain)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		SRR685340(GSM1079784)
Small RNAs (15-50 nts in length) from immorta. (dicer cell line)		SRR059765(GSM562827)
DN3_control. (thymus)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR042477(GSM539869)
mouse brain tissue [09-002]. (brain)		GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)		GSM361402(GSM361402)
CGNP_P6_p53--_Ink4c--_rep5. (brain)		SRR032476(GSM485234)
sRNA_delayed_deep_sequencing. (uterus)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		SRR042475(GSM539867)
mouse embryonic fibroblast cells [09-002]. (fibroblast)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR306537(GSM750580)
19-24nt. (ago2 brain)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR553604(SRX182810)
source: Spermatocytes. (Spermatocytes)		SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR065058(SRR065058)
Tissue-specific Regulation of Mouse MicroRNA . (pancreas)		GSM314553(GSM314553)
ESC dcr (Illumina). (ESC)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)
.....................CGAATATGATAAAAATACACTGTATGAA......................................................................................................................................................................................................... 2811.001.00-----------------------------------------------1.00-------------------
..................................................................................................TACCATAGCCCTTGTCAG...................................................................................................................................... 1811.001.00-----------------------------------------------------1.00-------------
...................................................................................................................................................................................................................................GGCTCCTACTCCGTGGT...... 1720.500.50----------------------------------------------------------------0.50--
....................................................................................................................................................................................................................................GCTCCTACTCCGTGGT...... 1620.500.50----------------------------0.50--------------------------------------