ID: uc009caf.6
GENE: Nod1(6)
chr6:54888166-54888415-


(1)
AGO1.ip 		(3)
AGO2.ip 		(2)
AGO3.ip 		(2)
B-CELL 		(8)
BRAIN 		(3)
CELL-LINE 		(1)
DCR.mut 		(3)
EMBRYO 		(3)
ESC 		(2)
FIBROBLAST 		(1)
KIDNEY 		(5)
LIVER 		(1)
LUNG 		(1)
LYMPH 		(7)
OTHER 		(1)
OTHER.mut 		(1)
OVARY 		(1)
PIWI.ip 		(4)
SKIN 		(5)
SPLEEN 		(6)
TESTES 		(1)
TOTAL-RNA 		(2)
UTERUS

Sense strand
TGGAGCCGTGTAAGGATTTAGTGCAGAAGGGAAGTCTGACTTTGGAGCCAGGCTGAGGCAGAGCCCAAACTCAGGGCTCTGTGAGTTCCCCCTTTAAACCTAGACAGTGGAAATCAGTAGGCGGCATGTACCCACTGTAGGAGAGAGTGTTCAAGCGACAGTGAAACTTATAAAGCCCCTGGCTGTGCTTTCTCTCCAAGTTTATACAACAACCAGATAACTGATATCGGAGCCAGGTATGTGGCCCAAA
...........................................................................................................................................(((((((......((((.(((((...................)))))))))))))))).....................................................
....................................................................................................................................133................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		mjLiverWT1()
Liver Data. (liver)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR059770(GSM562832)
Treg_Dicer. (spleen)		SRR345204(SRX097265)
source: size fractionated RNA from mouse hipp. (brain)		SRR042466(GSM539858)
mouse CD8+ T cells (spleen) [09-002]. (spleen)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR023849(GSM307158)
NPCsmallrna_rep1. (cell line)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR032476(GSM485234)
sRNA_delayed_deep_sequencing. (uterus)		SRR042478(GSM539870)
mouse lung tissue [09-002]. (lung)		GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		GSM640578(GSM640578)
small RNA in the liver with paternal control. (liver)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR042473(GSM539865)
mouse nTreg cells [09-002]. (lymph)		SRR402761(SRX117944)
source: ES E14 male cells. (ESC)		SRR073955(GSM629281)
total RNA. (blood)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR037937(GSM510475)
293cand2. (cell line)		SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)		SRR042451(GSM539843)
mouse B cells activated in vitro with LPS/aIgD-Dextran [09-002]. (b cell)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		SRR553585(SRX182791)
source: Kidney. (Kidney)		SRR038743(GSM527278)
small RNA-Seq. (dicer brain)		SRR065055(SRR065055)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)		SRR065046(SRR065046)
Tissue-specific Regulation of Mouse MicroRNA . (liver)		SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)		SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)		GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)		mjTestesWT1()
Testes Data. (testes)		SRR042443(GSM539835)
mouse pro B cells [09-002]. (b cell)		SRR346414(SRX098255)
Global profiling of miRNA and the hairpin pre. (Spleen)		SRR014234(GSM319958)
Ovary total. (ovary)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR014231(GSM319955)
16.5 dpc total. (testes)		GSM510444(GSM510444)
brain_rep5. (brain)		SRR037921(GSM510459)
e12p5_rep3. (embryo)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		Ago2IP517(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR037911(GSM510448)
newborn_rep4. (total RNA)		SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)		GSM640581(GSM640581)
small RNA in the liver with paternal control. (liver)		SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)
.........................................................................................................................................TAGGAGAGAGTGTTCAAGCGACAGT........................................................................................25118.0018.007.001.001.00-1.002.00--1.00---1.00--1.00------------1.00---------------1.00--------1.00-
...................................................................................................................................................................................TGGCTGTGCTTTCTCTCCAAGT.................................................22114.0014.00-1.002.004.00---1.001.00---1.00-1.00-----------1.00--1.00-------1.00-----------------
...................................................................................................................................................................................TGGCTGTGCTTTCTCTCCAAGA.................................................2218.005.003.002.00-1.00---------1.00--------------------------------------1.00--
.........................................................................................................................................TAGGAGAGAGTGTTCAAGCGA............................................................................................2116.006.00------1.00------------1.001.00----------1.001.00------------------1.00---
...................................................................................................................................................................................TGGCTGTGCTTTCTCTCCAAG..................................................2115.005.00-1.00---1.00------------------1.00---------------1.00-------1.00------
.........................................................................................................................................TAGGAGAGAGTGTTCAAGCGACAG.........................................................................................2415.005.00----1.00------------1.00----------------1.00-------1.00--1.00---------
...................................................................................................................................................................................TGGCTGTGCTTTCTCTCCAAGTA................................................2313.0014.00-1.001.00---------------------------1.00------------------------
.........................................................................................................................................TAGGAGAGAGTGTTCAAGCGACA..........................................................................................2312.002.00------1.00--------------------------------1.00---------------
...................................................................................................................................................................................TGGCTGTGCTTTCTCTCCAAGTAT...............................................2412.0014.00-1.00------------1.00----------------------------------------
..........................................................................................................................................AGGAGAGAGTGTTCAAGCGACAG.........................................................................................2312.002.00----2.00--------------------------------------------------
...................................................................................................................................................................................TGGCTGTGCTTTCTCTCCCAGT.................................................222.000.00-----------2.00-------------------------------------------
.............................GGAAGTCTGACTTTGGAATG.........................................................................................................................................................................................................202.000.00---------2.00---------------------------------------------
.........................................................................................................................................TAGGAGAGAGTGTTCAAGCGACAGA........................................................................................2512.005.00--2.00----------------------------------------------------
..............................GAAGTCTGACTTTGGAGAAGT.......................................................................................................................................................................................................212.000.00----------2.00--------------------------------------------
.................................................................................................................................ACCCACTGTAGGAGAGAGT......................................................................................................1911.001.00-------------------------------------------------1.00-----
.........................................................................................................................................TAGGAGAGAGTGTTCAAGCGACAA.........................................................................................2411.002.00-------------1.00-----------------------------------------
.........................................................................................................................................TAGGAGAGAGTGTTCAAGCGAC...........................................................................................2211.001.00---------------------------------1.00---------------------
...................................................................................................................................................................................TGGCTGTGCTTTCTCTCCAAGAAT...............................................2411.005.00---------------------------1.00---------------------------
..........................................................................................................................................AGGAGAGAGTGTTCAAGCGACAGTG.......................................................................................2511.001.00------1.00------------------------------------------------
.........................................................................................................................................TAGGAGAGAGTGTTCAAGCGACAGTA.......................................................................................2611.0018.00-----1.00-------------------------------------------------
...................................................................................................................................................................................TGGCTGTGCTTTCTCTCCAAGTT................................................2311.001.00---------------1.00---------------------------------------
..................................................................................................................................................................................CTGGCTGTGCTTTCTCTCCATTTA................................................241.000.00--------------------------------------1.00----------------
........................................................................................................................................GTAGGAGAGAGTGTTCAAGCGA............................................................................................2211.001.00----------------1.00--------------------------------------
.........................................................................................................................................TAGGAGAGAGTGTTCAAGCG.............................................................................................2011.001.00--------------------------------------------------1.00----
.............................................................................................................GAAATCAGTAGGCGGCTGGG.........................................................................................................................201.000.00-----------------------------------------------1.00-------
..........................................................................................................................................AGGAGAGAGTGTTCAAGCGA............................................................................................2011.001.00----------------------------------------------1.00--------
.........................................................................................CCCTTTAAACCTAGACCTA..............................................................................................................................................191.000.00------------------------------------1.00------------------
...................................................................................................................................................................................TGGCTGTGCTTTCTCTCCCCGT.................................................221.000.00-------1.00-----------------------------------------------
.........................................................................................................................................TAGGAGAGAGTGTTCAAGCGACT..........................................................................................2311.001.00----1.00--------------------------------------------------
...................................................................................................................................................................................TGGCTGTGCTTTCTCTCCAAT..................................................211.000.00----------------------1.00--------------------------------
....................................................................................................................................................................................GGCTGTGCTTTCTCTCCAAA..................................................201.000.00-1.00-----------------------------------------------------
.........................................................................................................................................................AGCGACAGTGAAACTGAAA..............................................................................191.000.00---------------------1.00---------------------------------
..........................................................................................................................................................................................................................AACTGATATCGGAGCCAGGT............2011.001.00------------------1.00------------------------------------
....................GTGCAGAAGGGAAGT.......................................................................................................................................................................................................................1580.120.12------------------------------------------------------0.12

Antisense strand
TGGAGCCGTGTAAGGATTTAGTGCAGAAGGGAAGTCTGACTTTGGAGCCAGGCTGAGGCAGAGCCCAAACTCAGGGCTCTGTGAGTTCCCCCTTTAAACCTAGACAGTGGAAATCAGTAGGCGGCATGTACCCACTGTAGGAGAGAGTGTTCAAGCGACAGTGAAACTTATAAAGCCCCTGGCTGTGCTTTCTCTCCAAGTTTATACAACAACCAGATAACTGATATCGGAGCCAGGTATGTGGCCCAAA
...........................................................................................................................................(((((((......((((.(((((...................)))))))))))))))).....................................................
....................................................................................................................................133................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		mjLiverWT1()
Liver Data. (liver)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR059770(GSM562832)
Treg_Dicer. (spleen)		SRR345204(SRX097265)
source: size fractionated RNA from mouse hipp. (brain)		SRR042466(GSM539858)
mouse CD8+ T cells (spleen) [09-002]. (spleen)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR023849(GSM307158)
NPCsmallrna_rep1. (cell line)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR032476(GSM485234)
sRNA_delayed_deep_sequencing. (uterus)		SRR042478(GSM539870)
mouse lung tissue [09-002]. (lung)		GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		GSM640578(GSM640578)
small RNA in the liver with paternal control. (liver)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR042473(GSM539865)
mouse nTreg cells [09-002]. (lymph)		SRR402761(SRX117944)
source: ES E14 male cells. (ESC)		SRR073955(GSM629281)
total RNA. (blood)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR037937(GSM510475)
293cand2. (cell line)		SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)		SRR042451(GSM539843)
mouse B cells activated in vitro with LPS/aIgD-Dextran [09-002]. (b cell)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		SRR553585(SRX182791)
source: Kidney. (Kidney)		SRR038743(GSM527278)
small RNA-Seq. (dicer brain)		SRR065055(SRR065055)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)		SRR065046(SRR065046)
Tissue-specific Regulation of Mouse MicroRNA . (liver)		SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)		SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)		GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)		mjTestesWT1()
Testes Data. (testes)		SRR042443(GSM539835)
mouse pro B cells [09-002]. (b cell)		SRR346414(SRX098255)
Global profiling of miRNA and the hairpin pre. (Spleen)		SRR014234(GSM319958)
Ovary total. (ovary)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR014231(GSM319955)
16.5 dpc total. (testes)		GSM510444(GSM510444)
brain_rep5. (brain)		SRR037921(GSM510459)
e12p5_rep3. (embryo)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		Ago2IP517(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR037911(GSM510448)
newborn_rep4. (total RNA)		SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)		GSM640581(GSM640581)
small RNA in the liver with paternal control. (liver)		SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)
.......................................................................................................................................................CAAGCGACAGTGAAACTTATATTA........................................................................... 241.000.00-----------------------------------------1.00-------------
.............................................AGCCAGGCTGAGGCAGAGCCCAAACTCA................................................................................................................................................................................. 2811.001.00-------------------------------------------1.00-----------
...................................................................................................CTAGACAGTGGAAATTCGG.................................................................................................................................... 191.000.00-----------------------------------1.00-------------------
......................................................................................................................................................................................CTGTGCTTTCTCTCCAAC.................................................. 181.000.00-----------------------1.00-------------------------------
..................................................................................GAGTTCCCCCTTTAATAT...................................................................................................................................................... 181.000.00-------------------------1.00-----------------------------