ID: uc009bdn.39
GENE: Flnc(40)
chr6:29406485-29406786+


(1)
AGO.mut 		(3)
AGO2.ip 		(5)
BRAIN 		(4)
CELL-LINE 		(9)
EMBRYO 		(1)
ESC 		(3)
FIBROBLAST 		(2)
LIVER 		(4)
OTHER 		(2)
OTHER.mut 		(1)
SPLEEN 		(2)
TESTES 		(1)
THYMUS 		(11)
TOTAL-RNA 		(1)
UTERUS

Sense strand
AGGCCGGGAACGCCTGGGCTCCTTCGGCAGCATCACCCGGCAGCAGGAAGGTGAGCAGAGAATACTGGGAACTGGGGTCCTCACAGGGAGGCTGGGGGGCCACCTGTTCTGTGAGTCAAAATGGCCTCATCCCTGACCACCTTGGCCCAGATGGCCAGTCAGGCCTGAGCAGAGAAGGGGGTTCACCGAGGAGGGAGGGGTTCATGGAGACTGGATACAGCCTCTTGGTCTGACATCACCCCAACCCTTCAGGTGAGGCCAGCTCTCAGGACATGACAGCCCAGGTGACAAGTCCGTCTGGC
.............................................................................................................................................................................................((((((.((((((((.((((.(((....))).)))).....)))....)))))..))))))....................................................
.......................................................................................................................................................................................184.................................................................252................................................
SizePerfect hitTotal NormPerfect NormGSM510456(GSM510456)
newborn_rep12. (total RNA)		SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR685339(GSM1079783)
Small RNAs (15-50 nts in length) from immorta. (cell line)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR037914(GSM510451)
newborn_rep7. (total RNA)		GSM510454(GSM510454)
newborn_rep10. (total RNA)		GSM510450(GSM510450)
newborn_rep6. (total RNA)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		GSM510452(GSM510452)
newborn_rep8. (total RNA)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR037912(GSM510449)
newborn_rep5. (total RNA)		GSM510453(GSM510453)
newborn_rep9. (total RNA)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR023851(GSM307160)
ZHBT-c412hsmallrna_rep1. (cell line)		SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)		SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		SRR346414(SRX098255)
Global profiling of miRNA and the hairpin pre. (Spleen)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR037911(GSM510448)
newborn_rep4. (total RNA)		SRR037909(GSM510446)
newborn_rep2. (total RNA)		SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR059765(GSM562827)
DN3_control. (thymus)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)		SRR037925(GSM510463)
e9p5_rep3. (embryo)		SRR037908(GSM510445)
newborn_rep1. (total RNA)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		GSM510455(GSM510455)
newborn_rep11. (total RNA)		SRR037924(GSM510462)
e9p5_rep2. (embryo)		SRR037937(GSM510475)
293cand2. (cell line)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR037927(GSM510465)
e7p5_rep1. (embryo)		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)
......................................................................................................................................................................................................................................TGACATCACCCCAACCCTTCAGT.................................................23138.0012.007.003.004.00---3.00-2.001.00-2.002.002.002.002.002.00-1.001.00---1.001.00-------1.001.00----------
......................................................................................................................................................................................................................................TGACATCACCCCAACCCTTCAG..................................................22112.0012.00-7.00--2.00--------------------1.00-----------1.00-1.00----
....................................................................................................................................................................................................................................TCTGACATCACCCCAACCCTTCAGT.................................................259.000.006.00------1.001.00---------------------------1.00-------
............................................................................................................................................................................................AGGAGGGAGGGGTTCATGGAGA............................................................................................2215.005.00---4.001.00---------------------------------------
......................................................................................................................................................................................................................................TGACATCACCCCAACCCTTCAGA.................................................2315.0012.001.001.00-----1.00--------------1.00-----------------1.00---
...........................................................GAATACTGGGAACTGGGGT................................................................................................................................................................................................................................1912.002.00-2.00------------------------------------------
....................................................................................................................................................................................................................................TCTGACATCACCCCATAA........................................................181.000.00--------------------------------------1.00-----
......................TTCGGCAGCATCACCCGGCA....................................................................................................................................................................................................................................................................2011.001.00----------1.00---------------------------------
..........................................GCAGGAAGGTGAGCAGGGA.................................................................................................................................................................................................................................................191.000.00-----------------1.00--------------------------
..................................................................................................................................................................................................................................................................................GACAGCCCAGGTGACAAGTCCGTCT...2511.001.00----------------------------1.00---------------
......................................................................................................................................................................................................................................TGACATCACCCCAACCCTTCAGTA................................................2411.0012.00---------1.00----------------------------------
..........................GCAGCATCACCCGGCT....................................................................................................................................................................................................................................................................161.000.00-----------------------------------1.00--------
..........................................GCAGGAAGGTGAGCAGAGCG................................................................................................................................................................................................................................................201.000.00---------------------1.00----------------------
......................................................................................................................................................................................................................................TGACATCACCCCAACCCTTCATA.................................................231.000.00-------1.00------------------------------------
..........................................................................................................................................................................................................................................................................CAGGACATGACAGCCCAGG.................1921.001.00------------------------------------------0.500.50
...............................ATCACCCGGCAGCAGGAAGGT..........................................................................................................................................................................................................................................................2111.001.00------------------------------1.00-------------
.............................................................................................................................................................................................................................................................TGAGGCCAGCTCTCAGGACA.............................2011.001.00----------1.00---------------------------------
................................................................................TCACAGGGAGGCTGGTTGG...........................................................................................................................................................................................................191.000.00--------------------------1.00-----------------
.......................................................................................................................................................................................CACCGAGGAGGGAGGCAG.....................................................................................................181.000.00-----------------------------1.00--------------

Antisense strand
AGGCCGGGAACGCCTGGGCTCCTTCGGCAGCATCACCCGGCAGCAGGAAGGTGAGCAGAGAATACTGGGAACTGGGGTCCTCACAGGGAGGCTGGGGGGCCACCTGTTCTGTGAGTCAAAATGGCCTCATCCCTGACCACCTTGGCCCAGATGGCCAGTCAGGCCTGAGCAGAGAAGGGGGTTCACCGAGGAGGGAGGGGTTCATGGAGACTGGATACAGCCTCTTGGTCTGACATCACCCCAACCCTTCAGGTGAGGCCAGCTCTCAGGACATGACAGCCCAGGTGACAAGTCCGTCTGGC
.............................................................................................................................................................................................((((((.((((((((.((((.(((....))).)))).....)))....)))))..))))))....................................................
.......................................................................................................................................................................................184.................................................................252................................................
SizePerfect hitTotal NormPerfect NormGSM510456(GSM510456)
newborn_rep12. (total RNA)		SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR685339(GSM1079783)
Small RNAs (15-50 nts in length) from immorta. (cell line)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR037914(GSM510451)
newborn_rep7. (total RNA)		GSM510454(GSM510454)
newborn_rep10. (total RNA)		GSM510450(GSM510450)
newborn_rep6. (total RNA)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		GSM510452(GSM510452)
newborn_rep8. (total RNA)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR037912(GSM510449)
newborn_rep5. (total RNA)		GSM510453(GSM510453)
newborn_rep9. (total RNA)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR023851(GSM307160)
ZHBT-c412hsmallrna_rep1. (cell line)		SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)		SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		SRR346414(SRX098255)
Global profiling of miRNA and the hairpin pre. (Spleen)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR037911(GSM510448)
newborn_rep4. (total RNA)		SRR037909(GSM510446)
newborn_rep2. (total RNA)		SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR059765(GSM562827)
DN3_control. (thymus)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)		SRR037925(GSM510463)
e9p5_rep3. (embryo)		SRR037908(GSM510445)
newborn_rep1. (total RNA)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		GSM510455(GSM510455)
newborn_rep11. (total RNA)		SRR037924(GSM510462)
e9p5_rep2. (embryo)		SRR037937(GSM510475)
293cand2. (cell line)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR037927(GSM510465)
e7p5_rep1. (embryo)		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)
...................................................................................................................................................................................................................................................................CAGCTCTCAGGACATACGA........................ 191.000.00-----1.00--------------------------------------
..........................................................................................................................GGCCTCATCCCTGACCTGGA................................................................................................................................................................ 201.000.00---------------------------1.00----------------
.................................................................................................................................................................................GGGGTTCACCGAGGATTAT.......................................................................................................... 191.000.00-----------------------------------------1.00--
.............................................................................................................................CTCATCCCTGACCACCAGCA............................................................................................................................................................. 201.000.00----------------------------------1.00---------
.......................................................................................................CTGTTCTGTGAGTCAATA..................................................................................................................................................................................... 181.000.00-------------------------------1.00------------
.................................................................................................................................................................................GGGGTTCACCGAGGAT............................................................................................................. 161.000.00---------1.00----------------------------------
.................................................................................................................................................................................GGGGTTCACCGAGGATTTT.......................................................................................................... 191.000.00--------------------1.00-----------------------