ID: uc008zsv.14
GENE: Sfswap(14)
chr5:130075316-130075565+


(2)
AGO1.ip 		(14)
AGO2.ip 		(2)
AGO3.ip 		(3)
B-CELL 		(27)
BRAIN 		(2)
DCR.mut 		(2)
DGCR8.mut 		(5)
EMBRYO 		(5)
ESC 		(2)
FIBROBLAST 		(1)
HEART 		(1)
KIDNEY 		(3)
LIVER 		(6)
OTHER 		(4)
OTHER.mut 		(1)
PIWI.ip 		(1)
PIWI.mut 		(6)
SKIN 		(2)
SPLEEN 		(11)
TESTES 		(1)
THYMUS

Sense strand
GACTCAGGAGGTGGAAGAAGGAAGATCAGGAGTTTATTTATGGTCCTCCTCAGCTTCATAGTTAGTTCAAAGCCATCCCAGAATATATGTCTTCAAAAGACAAAAAAAGGTCTCGTGTGTGGAGGGGCCCCTTGACACCAATTGAGACTGCCCTCTTGTCGAGCACTCCATGTACCCTGACAAGAGCACTTCTCTTTCAGAAGTCCCCACGAGAAGAAGAAGAAACGGCGCTCACGGTCTCGCACCAAAG
...............................................................................................................................................((((.(((..((((((((...((.....))....)))))))))))..))))........................................................
........................................................................................................................................137............................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		mjTestesWT3()
Testes Data. (testes)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		mjTestesWT1()
Testes Data. (testes)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		SRR402760(SRX117943)
source: ES E14 male cells. (ESC)		Ago2IP504(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR390299(GSM849857)
cell line: NIH-3T3cell type: fibroblastip ant. (ago2 fibroblast)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR553582(SRX182788)
source: Brain. (Brain)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		SRR206940(GSM723281)
other. (brain)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR306537(GSM750580)
19-24nt. (ago2 brain)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR306544(GSM750587)
19-24nt. (ago2 brain)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR306530(GSM750573)
19-24nt. (ago2 brain)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		Ago2IP517(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		SRR345205(SRX097266)
source: size fractionated RNA from mouse hipp. (brain)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR095853(SRX039174)
sequencing of miRNA from wild type and diseas. (heart)		SRR553585(SRX182791)
source: Kidney. (Kidney)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		GSM510444(GSM510444)
brain_rep5. (brain)		GSM640579(GSM640579)
small RNA in the liver with paternal Low pro. (liver)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR306531(GSM750574)
19-24nt. (ago2 brain)		SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		SRR206941(GSM723282)
other. (brain)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR038740(GSM527275)
small RNA-Seq. (dicer brain)		SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)		SRR206942(GSM723283)
other. (brain)		SRR038743(GSM527278)
small RNA-Seq. (dicer brain)		SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR059767(GSM562829)
DN3_Dicer. (thymus)		SRR553603(SRX182809)
source: Spermatids. (Spermatids)		GSM475279(GSM475279)
Miwi-IP. (miwi testes)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		SRR037920(GSM510458)
e12p5_rep2. (embryo)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		mjLiverWT3()
Liver Data. (liver)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
.............................................................................................................................................TTGAGACTGCCCTCTTGTCGAG.......................................................................................22199.0099.0030.004.003.00-6.003.004.00-3.004.00-3.003.002.00-2.003.002.002.002.002.002.003.002.00-1.001.001.00-1.00--2.00---1.00---1.001.00--1.00------1.00------1.00---1.00-1.00--------
.............................................................................................................................................TTGAGACTGCCCTCTTGTCGAGC......................................................................................23178.0078.0055.001.003.005.00---6.001.00-5.001.00------------------1.00------------------------------------------
............................................................................................................................................ATTGAGACTGCCCTCTTGTCGAG.......................................................................................23117.0017.007.00-1.00-1.00------1.00--4.00-----------1.00----------1.00-------------------1.00---------------
.............................................................................................................................................TTGAGACTGCCCTCTTGTCGAGA......................................................................................23115.0099.008.00-1.001.00---------2.00---2.00-----------------------------1.00-------------------------
.............................................................................................................................................TTGAGACTGCCCTCTTGTCGAGT......................................................................................23112.0099.002.00--3.00-----------2.00---1.00-1.00--------------1.00-------------------------------1.001.00---
.............................................................................................................................................TTGAGACTGCCCTCTTGTCGA........................................................................................2117.007.001.002.00-----------1.00--1.001.00------------------------------------------1.00------------
.............................................................................................................................................TTGAGACTGCCCTCTTGTCG.........................................................................................2017.007.001.00--------2.00--1.00-----1.00-1.00-------------1.00--------------------------------------
............................................................................................................................................ATTGAGACTGCCCTCTTGTCGAGT......................................................................................2416.0017.00-----4.001.00--------1.00---------------------------------------------------------
............................................................................................................................................ATTGAGACTGCCCTCTTGTCG.........................................................................................2115.005.00-1.00----1.00-----------------1.00--1.00---------1.00-----------------------------------
..............................................................................................................................................TGAGACTGCCCTCTTGTCGAGC......................................................................................2214.004.003.00----------------------------------1.00-------------------------------------
.................................................................................................................................................................................TGACAAGAGCACTTCTCTTTCA...................................................2214.004.00-1.00-----------------------1.00-------------------------------------1.00--1.00------
...........................................................................................................................................AATTGAGACTGCCCTCTTGTCG.........................................................................................2213.003.001.00-----1.00-----------------1.00------------------------------------------------
............................................................................................................................................ATTGAGACTGCCCTCTTGTCGA........................................................................................2213.003.00-2.00----------------1.00------------------------------------------------------
.................................................................................................................................................................................TGACAAGAGCACTTCTCTTTC....................................................2113.003.00---------------------------------1.00-1.00-------------------------------1.00-----
............................................................................................................................................ATTGAGACTGCCCTCTTGTCGAGC......................................................................................2412.002.001.00----------------------------------------------------------1.00-------------
............................................................................................................................................ATTGAGACTGCCCTCTTGTCGAGA......................................................................................2412.0017.001.00---1.00--------------------------------------------------------------------
.............................................................................................................................................TTGAGACTGCCCTCTTGTCGAGCACT...................................................................................2612.002.00-------------------1.00-----------------------------------1.00-----------------
.................................................................................................................................................................................TGACAAGAGCACTTCTCTTT.....................................................2011.001.00----------------------------1.00--------------------------------------------
.ACTCAGGAGGTGGAAGAAGGAAA..................................................................................................................................................................................................................................231.000.00--------------------------------------------------------1.00----------------
............................................................................................................................................ATTGAGACTGCCCTCTTGTCGCGT......................................................................................2411.005.00-----------------------1.00-------------------------------------------------
.............................................................................................................................................TTGAGACTGCCCTCTTGTCGAGTT.....................................................................................2411.0099.001.00------------------------------------------------------------------------
...............AGAAGGAAGATCAGGACTCA.......................................................................................................................................................................................................................201.000.00--------------------------------------------------1.00----------------------
.............................................................................................................................................TTGAGACTGCCCTCTTGTGG.........................................................................................201.000.00----------------1.00--------------------------------------------------------
.............................................................................................................................................TTGAGACTGCCCTCTTGTCGAGCT.....................................................................................2411.0078.001.00------------------------------------------------------------------------
........................................................................................................................................................................................................AAGTCCCCACGAGAAGAAGAAGAAAC........................2611.001.00------------------------------------------------1.00------------------------
.................................................................................................................................................................................TGACAAGAGCACTTCTCTTTCAG..................................................2311.001.00--1.00----------------------------------------------------------------------
...........................................................................................................................................AATTGAGACTGCCCTCTTGTCGAG.......................................................................................2411.001.00--------1.00----------------------------------------------------------------
.................................................................................................................................................................................................................CGAGAAGAAGAAGAATTGG......................191.000.00-------------------------------------------1.00-----------------------------
..............................................................................................................................................TGAGACTGCCCTCTTGTCGAG.......................................................................................2111.001.00--------------1.00----------------------------------------------------------
...............................................................................................................................................................................................................CACGAGAAGAAGAAGCGG.........................181.000.00-------------------------------------------------1.00-----------------------
..............................................................................................................................................TGAGACTGCCCTCTTGTCGAGCT.....................................................................................2311.004.001.00------------------------------------------------------------------------
...........................................................AGTTAGTTCAAAGCCATCCCAGAAT......................................................................................................................................................................2511.001.00-----------------------------1.00-------------------------------------------
................................................................................................................................................................................................................................ACGGCGCTCACGGTCTCGCA......2011.001.00------------------------------------------1.00------------------------------
..............................................................................................................................................................................................................................AAACGGCGCTCACGGTCTCGCAC.....2311.001.00-----------------------------------------------------------------1.00-------
..............................................................................................................................................TGAGACTGCCCTCTTGTCGCGA......................................................................................221.000.001.00------------------------------------------------------------------------
...........................................................................................TTCAAAAGACAAAAAAAAAAG..........................................................................................................................................211.000.00--------1.00----------------------------------------------------------------
..........................................................................................................................................CAATTGAGACTGCCCTCTTTTCG.........................................................................................231.000.00---------------------------------1.00---------------------------------------
...........................................................................................................................................AATTGAGACTGCCCTCTTGTCGT........................................................................................2311.003.00------------------------------------------------------1.00------------------
............................................................................................................................................................................................................CCCCACGAGAAGAAGAAGAAACG.......................2311.001.00------------------------------1.00------------------------------------------
............................................................................................................................................ATTGAGACTGCCCTCTTGTCGTG.......................................................................................2311.005.00------------1.00------------------------------------------------------------
...................................................................................................................................................................................................................AGAAGAAGAAGAAACGAGTC...................201.000.00-----------------------------------------------------1.00-------------------
...........................................................................TCCCAGAATATATGTCTTCAAAAGACAAAAA................................................................................................................................................3111.001.00----------------------------------1.00--------------------------------------
..........................................................................................................................................CAATTGAGACTGCCCTCTTGTCGT........................................................................................241.000.00--------------------------------------1.00----------------------------------
.............................................................................................................................................TTGAGACTGCCCTCTTGTCTAGC......................................................................................231.000.00----------------------------------------------1.00--------------------------
..................................................................................................................................................................................GACAAGAGCACTTCTCTTTCAGA.................................................2311.001.00---------------------------------------------1.00---------------------------
...........................................................................................................................................................................................................TCCCCACGAGAAGAAGAAGAAACGGCGCT..................2911.001.00----------------------------------------------------------------------1.00--
............................................................................................TCAAAAGACAAAAAAAG.............................................................................................................................................1780.380.38-----------------------------------------------------------------------0.38-

Antisense strand
GACTCAGGAGGTGGAAGAAGGAAGATCAGGAGTTTATTTATGGTCCTCCTCAGCTTCATAGTTAGTTCAAAGCCATCCCAGAATATATGTCTTCAAAAGACAAAAAAAGGTCTCGTGTGTGGAGGGGCCCCTTGACACCAATTGAGACTGCCCTCTTGTCGAGCACTCCATGTACCCTGACAAGAGCACTTCTCTTTCAGAAGTCCCCACGAGAAGAAGAAGAAACGGCGCTCACGGTCTCGCACCAAAG
...............................................................................................................................................((((.(((..((((((((...((.....))....)))))))))))..))))........................................................
........................................................................................................................................137............................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		mjTestesWT3()
Testes Data. (testes)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		mjTestesWT1()
Testes Data. (testes)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		SRR402760(SRX117943)
source: ES E14 male cells. (ESC)		Ago2IP504(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR390299(GSM849857)
cell line: NIH-3T3cell type: fibroblastip ant. (ago2 fibroblast)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR553582(SRX182788)
source: Brain. (Brain)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		SRR206940(GSM723281)
other. (brain)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR306537(GSM750580)
19-24nt. (ago2 brain)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR306544(GSM750587)
19-24nt. (ago2 brain)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR306530(GSM750573)
19-24nt. (ago2 brain)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		Ago2IP517(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		SRR345205(SRX097266)
source: size fractionated RNA from mouse hipp. (brain)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR095853(SRX039174)
sequencing of miRNA from wild type and diseas. (heart)		SRR553585(SRX182791)
source: Kidney. (Kidney)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		GSM510444(GSM510444)
brain_rep5. (brain)		GSM640579(GSM640579)
small RNA in the liver with paternal Low pro. (liver)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR306531(GSM750574)
19-24nt. (ago2 brain)		SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		SRR206941(GSM723282)
other. (brain)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR038740(GSM527275)
small RNA-Seq. (dicer brain)		SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)		SRR206942(GSM723283)
other. (brain)		SRR038743(GSM527278)
small RNA-Seq. (dicer brain)		SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR059767(GSM562829)
DN3_Dicer. (thymus)		SRR553603(SRX182809)
source: Spermatids. (Spermatids)		GSM475279(GSM475279)
Miwi-IP. (miwi testes)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		SRR037920(GSM510458)
e12p5_rep2. (embryo)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		mjLiverWT3()
Liver Data. (liver)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
..........................................................................................................................................................................TGTACCCTGACAAGAGAC.............................................................. 182.000.00-------------------------------2.00-----------------------------------------
.............................................................................................................................................................................................................................................TCTCGCACCAAAG 1361.501.50--------------------------------------0.331.17---------------------------------
....................................................................AAAGCCATCCCAGAATACC................................................................................................................................................................... 191.000.00----------------------------------------------------1.00--------------------
..........................................................................................................................................................................................................................................CGGTCTCGCACCAA.. 1421.001.00----------------------------1.00--------------------------------------------
..........................................GTCCTCCTCAGCTTCATGTA............................................................................................................................................................................................ 201.000.00-------------------------------------------------------------1.00-----------
..................................................................TCAAAGCCATCCCAGAA....................................................................................................................................................................... 1730.330.33------------------------------------------------------------------------0.33