ID: uc008zos.2
GENE: Hip1r(3)
chr5:124439693-124439995+


(1)
AGO.mut 		(2)
AGO1.ip 		(15)
AGO2.ip 		(2)
AGO3.ip 		(5)
B-CELL 		(27)
BRAIN 		(3)
CELL-LINE 		(1)
DCR.mut 		(2)
DGCR8.mut 		(8)
EMBRYO 		(4)
ESC 		(3)
FIBROBLAST 		(2)
HEART 		(1)
KIDNEY 		(3)
LIVER 		(1)
LUNG 		(1)
LYMPH 		(11)
OTHER 		(1)
OTHER.ip 		(5)
OTHER.mut 		(7)
PIWI.ip 		(2)
PIWI.mut 		(7)
SKIN 		(4)
SPLEEN 		(23)
TESTES 		(1)
THYMUS 		(3)
TOTAL-RNA

Sense strand
GGAAGTTCTGTCACGTCCTTCACAAGGTCCTCCGGGACGGACACCCCAACGTGAGTAGTGAGCACAGCCCTTGGTCCCACAGGCTCAGGCAAGCGCCGCCGCCATGCCACCAGCTGACATCATCCACTGTATCCCATGGAAGTGTGCTGCTCTGACATGTGTCTGTCCTCCTGGGCTGGGGGCTGGACACCCTGCCCAGTGCTGGGAGGGACGGCTCAGGTTCTGTGTCCTCCCCTCCCTTCTCTGGTTGCAGGTCCTGCATGACTATCAGCGGTACCGGAGCAACATACGTGAGATCGGTGA
......................................................................................................................................((((..((.((...)).))..)))).((((..(((((......)))))..))))...((((((((....(((((((..(((.(((...))).)))...)))))))....))))..))))..................................................
...................................................................................................................................132......................................................................................................................253................................................
SizePerfect hitTotal NormPerfect NormSRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		Ago2IP517(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		mjLiverKO1()
Liver Data. (Zcchc11 liver)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR306530(GSM750573)
19-24nt. (ago2 brain)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR306536(GSM750579)
19-24nt. (ago2 brain)		SRR306544(GSM750587)
19-24nt. (ago2 brain)		SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		mjTestesWT3()
Testes Data. (testes)		GSM475280(GSM475280)
Mili-IP. (mili testes)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		Ago2IP504(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		SRR014235(GSM319959)
2 dpp total. (testes)		RuiDGCR8KO(Rui)
DGCR8-dependent microRNA biogenesis is essent. (dgcr8 skin)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		mjTestesWT2()
Testes Data. (testes)		SRR051939(GSM545783)
Mov10L1-associated piRNAs. (mov10L testes)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR306529(GSM750572)
19-24nt. (ago2 brain)		SRR553603(SRX182809)
source: Spermatids. (Spermatids)		SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR116846(GSM678422)
Small RNA deep sequencing from mouse epididym. (epididymis)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR206942(GSM723283)
other. (brain)		SRR038743(GSM527278)
small RNA-Seq. (dicer brain)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR306528(GSM750571)
19-24nt. (ago2 brain)		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)		SRR073954(GSM629280)
total RNA. (blood)		SRR206940(GSM723281)
other. (brain)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR037902(GSM510438)
testes_rep3. (testes)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		SRR306543(GSM750586)
19-24nt. (ago2 brain)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		GSM510456(GSM510456)
newborn_rep12. (total RNA)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR037914(GSM510451)
newborn_rep7. (total RNA)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR685339(GSM1079783)
Small RNAs (15-50 nts in length) from immorta. (cell line)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR029039(GSM433291)
25dpp_homo_tdrd6-KO. (tdrd6 testes)		SRR014229(GSM319953)
10 dpp MILI. (mili testes)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR306531(GSM750574)
19-24nt. (ago2 brain)		SRR059775(GSM562837)
MEF_Drosha. (MEF)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)		SRR014231(GSM319955)
16.5 dpc total. (testes)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)		SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)		SRR553585(SRX182791)
source: Kidney. (Kidney)		SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		SRR037937(GSM510475)
293cand2. (cell line)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR059770(GSM562832)
Treg_Dicer. (spleen)		GSM510454(GSM510454)
newborn_rep10. (total RNA)		SRR038741(GSM527276)
small RNA-Seq. (brain)		SRR037925(GSM510463)
e9p5_rep3. (embryo)		SRR095853(SRX039174)
sequencing of miRNA from wild type and diseas. (heart)		GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		SRR346415(SRX098256)
source: Testis. (Testes)		SRR042488(GSM539880)
mouse BclXL germinal center B cells [BalbC] [09-002]. (B cell)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		SRR059767(GSM562829)
DN3_Dicer. (thymus)		SRR095855BC5(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR014236(GSM319960)
10 dpp total. (testes)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR059772(GSM562834)
CD4_Drosha. (spleen)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR037928(GSM510466)
e7p5_rep2. (embryo)		SRR039610(GSM527274)
small RNA-Seq. (brain)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		GSM261957(GSM261957)
oocytesmallRNA-19to24. (oocyte)		SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)
......................................................................................................................................................................................................................................TCCCCTCCCTTCTCTGGTTGCAGT.................................................24137.0021.006.001.00-3.003.00----1.003.00----2.001.00-2.00-3.00---1.00----------------1.00---1.00-1.00------1.00---1.00--------1.00----------1.00------1.00-1.00-----------1.00-1.00-----
......................................................................................................................................................................................................................................TCCCCTCCCTTCTCTGGTTGCAG..................................................23121.0021.001.001.00--1.00-2.004.00--1.00--2.002.00------------1.00-------1.00------1.00--------------1.00--1.00-----------------------1.00------------1.00---------
......................................................................................................................................................................................................................................TCCCCTCCCTTCTCTGGTTGC....................................................2116.006.00-1.00---2.00-------------------1.00--------------------------------------------------1.00---1.00--------------------------
........................................................................................................................................TGGAAGTGTGCTGCTCTGACATGTG..............................................................................................................................................2515.005.00--------2.00-----------------1.00-------1.00-1.00----------------------------------------------------------------------
................................................................................................................................................................................................TGCCCAGTGCTGGGAGGGACGG.........................................................................................2214.004.00----1.001.00------------------------2.00----------------------------------------------------------------------------
.......................................................................................................................................................................................................................................CCCCTCCCTTCTCTGGTTGCAGT.................................................2314.001.00-1.00--------------1.00-1.00--1.00-------------------------------------------------------------------------------------
............................................................................................................................................................................................................................................CCCTTCTCTGGTTGCAGT.................................................184.000.00-------------1.00---------------------1.00-------2.00---------------------------------------------------------------
......................................................................................................................................................................................................................................TCCCCTCCCTTCTCTGGTTGCA...................................................2213.003.00------------------------------------------1.00--------------------1.00-----------1.00-------------------------------
..........................................................................................................................................................................................................................................CTCCCTTCTCTGGTTGCAG..................................................1912.002.00----------------------------------------2.00------------------------------------------------------------------
....................................................................................................................................................................................................................................CCTCCCCTCCCTTCTCTGGTTGT....................................................232.000.00---------------1.00-----------------1.00-------------------------------------------------------------------------
........................................................................................................................................TGGAAGTGTGCTGCTCTGACATGTGTCT...........................................................................................................................................2812.002.00--------1.00-----------------------------------------------------------------------------------------1.00--------
......................................................................................................................................................................................................................................TCCCCTCCCTTCTCTGGTTGCAT..................................................2312.003.00---1.00-----------------------------------1.00-------------------------------------------------------------------
...................................................................................................................................TCCCATGGAAGTGTGCTGCTCTGAC...................................................................................................................................................2512.002.00-------------------------------1.001.00--------------------------------------------------------------------------
.....................................................................................................................................................................................................................................CTCCCCTCCCTTCTCTGGTTGT....................................................222.000.00-1.00-------------------------1.00-------------------------------------------------------------------------------
..............................................................................................................................................................................................CCTGCCCAGTGCTGGAAG...............................................................................................182.000.00---------1.00----------------------------------------------------------1.00--------------------------------------
....................................................................................................................................................................................................................................CCTCCCCTCCCTTCTCTGGTTGC....................................................2312.002.00-1.00----------------------------------------------1.00----------------------------------------------------------
................................................................................................................................................................................................TGCCCAGTGCTGGGAGGGACG..........................................................................................2111.001.00------------------------------------------------------------------------------------------------------1.00----
..................................................................................................................................................................................................................................................................GCATGACTATCAGCGGTACCGGAGCAAC.................2811.001.00--------------------------------------------1.00--------------------------------------------------------------
......................................................................................................................................................................................................................................TCCCCTCCCTTCTCTGGTTGCAGTTT...............................................2611.0021.001.00----------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................CCTGCCCAGTGCTGGAAGG..............................................................................................191.000.00---------------------------------------------------------------------------------------------------------1.00-
..........................................................................................................................................................................................................................................................................................CAACATACGTGAGATCGG...1811.001.00--------------------------------------------------------------------------------------------------------1.00--
.......................................................................................................................................................................................................................................CCCCTCCCTTCTCTGGTTGCAG..................................................2211.001.001.00----------------------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................................................................................TATCAGCGGTACCGGAGCAAT.................211.000.00---------------------------------------------------1.00-------------------------------------------------------
......................................................................................................................................................................................................................................................................GACTATCAGCGGTACCGGAGC....................2111.001.001.00----------------------------------------------------------------------------------------------------------
..................................................................................................................TGACATCATCCACTGTAGCT.........................................................................................................................................................................201.000.00-------------------------------------------------------------------------------------------------------1.00---
...............................................................................................CCGCCGCCATGCCACCAGCTGA..........................................................................................................................................................................................2211.001.001.00----------------------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................................TCCCCTCCCTTCTCTGGTTGCAAT.................................................2411.003.00----------------------------------------------------------------------------------------1.00------------------
.....................................................................................................................................................................................................................................................................TGACTATCAGCGGTACCGGAGCAACAT...............2711.001.00--------------------------------------1.00--------------------------------------------------------------------
.....................................................................................................................................CCATGGAAGTGTGCTGCTCTGA....................................................................................................................................................2211.001.00---------------------------------------------------------------------------------1.00-------------------------
........................................................................................................TGCCACCAGCTGACAGCGG....................................................................................................................................................................................191.000.00--1.00--------------------------------------------------------------------------------------------------------
........................................................................................................................................TGGAAGTGTGCTGCTCTGACATGTGTCTGTC........................................................................................................................................3111.001.00----------------------------------1.00------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................................ATCAGCGGTACCGGAGCAAC.................2011.001.00-----------------1.00-----------------------------------------------------------------------------------------
......................................................................................................................................................................................................................................TCCCCTCCCTTCTCTGGTTGCATT.................................................2411.003.00---------------------1.00-------------------------------------------------------------------------------------
................................................................................................................................................TGCTGCTCTGACATGTGTCTGTCCTCC....................................................................................................................................2711.001.00--------1.00--------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................GGGAGGGACGGCTCAGACG.................................................................................191.000.00--------------------------------------------------------------1.00--------------------------------------------
........................................................................................................................CATCCACTGTATCCCATGGAAGTGTGC............................................................................................................................................................2711.001.00------------------------------------1.00----------------------------------------------------------------------
.....................................................................................................................................................................................................................................................................TGACTATCAGCGGTACCGGAGCAAC.................2511.001.00--------------------------------1.00--------------------------------------------------------------------------
..................................................GTGAGTAGTGAGCACAGCCCTTGGTCCCAAA..............................................................................................................................................................................................................................311.000.00-------------------------------------------------------------------------1.00---------------------------------
....................................................................................................................................................................................................................................CCTCCCCTCCCTTCTCTGGTTAT....................................................231.000.00-------------------------------------------------------------1.00---------------------------------------------
..................................................................................................................TGACATCATCCACTGTATCCCATGGAAGC................................................................................................................................................................291.000.00-------------------------------------1.00---------------------------------------------------------------------
...................................................................................................................................TCCCATGGAAGTGTGCTGCTCTGACAAA................................................................................................................................................281.000.00-------------------------------1.00---------------------------------------------------------------------------
....................................................................................................................................................................................................CAGTGCTGGGAGGGACGG.........................................................................................1811.001.00----------------------------1.00------------------------------------------------------------------------------
...............................................................................................................................................................................................CTGCCCAGTGCTGGGAGGGACGGCT.......................................................................................2511.001.001.00----------------------------------------------------------------------------------------------------------
................................................................................................................................................................................................TGCCCAGTGCTGGGAGGGACGGCTCAGG...................................................................................2811.001.00--------------------------------------------1.00--------------------------------------------------------------
.............................CTCCGGGACGGACACCCC................................................................................................................................................................................................................................................................1811.001.00---------------------------------------------------------------------------------------------1.00-------------
.............................................................................................................................................................................................................GAGGGACGGCTCAGGTTCT...............................................................................1911.001.00----------------------------------------------------------------------------------------------1.00------------
....................................................................................................................................................................................................................................CCTCCCCTCCCTTCTCTGGTTT.....................................................221.000.00-----1.00-----------------------------------------------------------------------------------------------------
..................................................GTGAGTAGTGAGCACAGCCCTTGGTCCC.................................................................................................................................................................................................................................2811.001.00----------------------------------------------------------------1.00------------------------------------------
...................................................TGAGTAGTGAGCACAGCCCTTGGTCC..................................................................................................................................................................................................................................2611.001.00-----------------------------------------------------------------------------1.00-----------------------------
..................................................................................................................TGACATCATCCACTGTAGCTC........................................................................................................................................................................211.000.00--1.00--------------------------------------------------------------------------------------------------------
................................................................................................................................................................................................TGCCCAGTGCTGGGAGGGACGGA........................................................................................2311.004.00-----------------------------1.00-----------------------------------------------------------------------------
................................................................................................................................................................................................TGCCCAGTGCTGGGAGGGACGGCTCAGT...................................................................................281.000.00----------------------------------------------1.00------------------------------------------------------------
.....................................................................................................................................................................................................................................CTCCCCTCCCTTCTCTGGTTGCTT..................................................241.000.00----------------------------------------------------1.00------------------------------------------------------
........................................................................................................TGCCACCAGCTGACATCGCTT..................................................................................................................................................................................211.000.00--1.00--------------------------------------------------------------------------------------------------------
...........................................................................................................CACCAGCTGACATCACCG..................................................................................................................................................................................181.000.00----------------------------------------------------------------------------------------------------1.00------
..........................................................................................................................................................................................................................................................................ATCAGCGGTACCGGAGCAACAT...............2211.001.00-------------------1.00---------------------------------------------------------------------------------------
..................................................................................................................................................................................................................................................................................TACCGGAGCAACATACGTGAGA.......2211.001.00-------------------1.00---------------------------------------------------------------------------------------
.................................................................................................................................................................................................................................................................TGCATGACTATCAGCGGTACCGGAGC....................2611.001.00-----------------------1.00-----------------------------------------------------------------------------------
..............................................................................................................................................................................................CCTGCCCAGTGCTGGGAGGGA............................................................................................2111.001.00-------------------------------------------------------1.00---------------------------------------------------
..............................................................................................................................................................................................CCTGCCCAGTGCTGGGAGGGACGGCCC......................................................................................271.000.00--------------------------------------------------------------------------1.00--------------------------------
......................................................................................................................................................................................................................................TCCCCTCCCTTCTCTGGTTGCCGT.................................................2411.006.00-1.00---------------------------------------------------------------------------------------------------------
......................................................................................................................................................TCTGACATGTGTCTGTCCTCCTGGGC...............................................................................................................................2611.001.00-----------------------------------------------------------------------------------------------1.00-----------
................................................................................................................................................................GTCTGTCCTCCTGGGCTGGGGGCT.......................................................................................................................2411.001.00------------1.00----------------------------------------------------------------------------------------------
...................................GACGGACACCCCAAC.............................................................................................................................................................................................................................................................1511.001.00-------------------------------------------------------------------------------1.00---------------------------
.........................................................................................................................................................................CCTGGGCTGGGGGCTCGGC...................................................................................................................191.000.00------------------------------------------------------------------------------------------1.00----------------
.......CTGTCACGTCCTTCACAAGGTCCT................................................................................................................................................................................................................................................................................2411.001.00------------1.00----------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................................ATCAGCGGTACCGGAGCAACATAC.............2411.001.00-----------------1.00-----------------------------------------------------------------------------------------
.....................................................................................................CCATGCCACCAGCTGACATCATCCACTGTA............................................................................................................................................................................3011.001.00------------------------------------------------------------------------1.00----------------------------------
.....................................................................................................................................................................................................................................................................TGACTATCAGCGGTACCGGAGCAACA................2611.001.00--------------------------------------1.00--------------------------------------------------------------------
...............................................................................................................................TGTATCCCATGGAAGTGTGCTGCTCTG.....................................................................................................................................................2711.001.00----------------------------------------------------------------------------------1.00------------------------
..........................................................................................................................................................................................................TGGGAGGGACGGCTCTC....................................................................................171.000.00-----------1.00-----------------------------------------------------------------------------------------------
..................................................................GCCCTTGGTCCCACACGGT..........................................................................................................................................................................................................................191.000.00--------------------------------------------------1.00--------------------------------------------------------
........................................................................................................TGCCACCAGCTGACAGCGT....................................................................................................................................................................................191.000.00-----------------------------------------------------1.00-----------------------------------------------------
......................................................................................................................................................................................................................................TCCCCTCCCTTCTCTGGTTGCAGA.................................................2411.0021.00--------------------------------------------------------1.00--------------------------------------------------
.........................................................................................................GCCACCAGCTGACATCATCCAC................................................................................................................................................................................2211.001.00---------1.00-------------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................................TCCCCTCCCTTCTCTGGTTGCC...................................................2211.006.00------1.00----------------------------------------------------------------------------------------------------
.........................................................................................................................................GGAAGTGTGCTGCTCTGAC...................................................................................................................................................1911.001.00-------------------1.00---------------------------------------------------------------------------------------
...........................................................................................................................................................................................................GGGAGGGACGGCTCAGCCCG................................................................................201.000.00------------------------------------------------------------------1.00----------------------------------------
......................................................................................................................................................................................................................................TCCCCTCCCTTCTCTGGTTGCTT..................................................2311.006.00---1.00-------------------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................................TCCCCTCCCTTCTCTGGTTGCCG..................................................2311.006.00------1.00----------------------------------------------------------------------------------------------------
...................................................................................CTCAGGCAAGCGCCGCCGCCAT......................................................................................................................................................................................................2211.001.00--------------------------------------------------------------------------------------------1.00--------------
........................................................................................................TGCCACCAGCTGACATCAGCT..................................................................................................................................................................................211.000.00-----------------------------------------------------------------------------------------1.00-----------------
..........................GTCCTCCGGGACGGACACCCCAAC.............................................................................................................................................................................................................................................................2411.001.00--------------1.00--------------------------------------------------------------------------------------------
..............GTCCTTCACAAGGTCCTCC..............................................................................................................................................................................................................................................................................1911.001.00-----------------------------------------1.00-----------------------------------------------------------------
.....................................................................................................................................CCATGGAAGTGTGCTGCTCTGAT...................................................................................................................................................2311.001.00-----------------------------------------------------------1.00-----------------------------------------------
......................................................................................................................................................................................................................................TCCCCTCCCTTCTCTGGTT......................................................1921.001.00-------------------------1.00---------------------------------------------------------------------------------
........................................................................................................................................TGGAAGTGTGCTGCTCTGACATGTGTCTG..........................................................................................................................................2911.001.00-------------------------------------1.00---------------------------------------------------------------------
......................................................................................................................................................................................................................................TCCCCTCCCTTCTCTGGTTG.....................................................2011.001.00---------------------1.00-------------------------------------------------------------------------------------
...................................................................................................................................TCCCATGGAAGTGTGCTGCT........................................................................................................................................................2011.001.00-----------------------1.00-----------------------------------------------------------------------------------
........................................................................................................................................................................................................................................................................CTATCAGCGGTACCGGAGC....................1911.001.00-----------------------1.00-----------------------------------------------------------------------------------
...............................................................................................................................................................................................CTGCCCAGTGCTGGGAGGGACGT.........................................................................................231.000.00-----1.00-----------------------------------------------------------------------------------------------------
........................................................................................................................................TGGAAGTGTGCTGCTCTGACATGTGT.............................................................................................................................................2611.001.00--------------------------1.00--------------------------------------------------------------------------------
..........................................................................................AAGCGCCGCCGCCATGCCACC................................................................................................................................................................................................2111.001.001.00----------------------------------------------------------------------------------------------------------
..................................................GTGAGTAGTGAGCACAGCCCTTGGT....................................................................................................................................................................................................................................2511.001.00-----------------------------------------------------------------1.00-----------------------------------------
..........................................................................................................................................................................................................................................................................ATCAGCGGTACCGGAGCAACA................2111.001.00-----------------1.00-----------------------------------------------------------------------------------------
...................................................................................................................................TCCCATGGAAGTGTGCTGCTCTGACATGT...............................................................................................................................................2911.001.00----------------------------------------------------------------------1.00------------------------------------
.........................................................................................CAAGCGCCGCCGCCATGCCACCAGCTGAC.........................................................................................................................................................................................2911.001.00------------1.00----------------------------------------------------------------------------------------------
...............................................................................................................................................................................................CTGCCCAGTGCTGGGAGGGACGGCTCA.....................................................................................2711.001.00---------------------------------------------------------------------1.00-------------------------------------
....................................................................................................................................................................................................................................CCTCCCCTCCCTTCTCTGGTTTT....................................................231.000.00---------------------------------1.00-------------------------------------------------------------------------
.....................................................................................................................................................................................................................................CTCCCCTCCCTTCTCTGGTT......................................................2020.500.50------0.50----------------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................................TCCCCTCCCTTCTCTGGT.......................................................1820.500.50-------------------------0.50---------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................AGCGGTACCGGA......................1240.250.25-----------0.25-----------------------------------------------------------------------------------------------

Antisense strand
GGAAGTTCTGTCACGTCCTTCACAAGGTCCTCCGGGACGGACACCCCAACGTGAGTAGTGAGCACAGCCCTTGGTCCCACAGGCTCAGGCAAGCGCCGCCGCCATGCCACCAGCTGACATCATCCACTGTATCCCATGGAAGTGTGCTGCTCTGACATGTGTCTGTCCTCCTGGGCTGGGGGCTGGACACCCTGCCCAGTGCTGGGAGGGACGGCTCAGGTTCTGTGTCCTCCCCTCCCTTCTCTGGTTGCAGGTCCTGCATGACTATCAGCGGTACCGGAGCAACATACGTGAGATCGGTGA
......................................................................................................................................((((..((.((...)).))..)))).((((..(((((......)))))..))))...((((((((....(((((((..(((.(((...))).)))...)))))))....))))..))))..................................................
...................................................................................................................................132......................................................................................................................253................................................
SizePerfect hitTotal NormPerfect NormSRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		Ago2IP517(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		mjLiverKO1()
Liver Data. (Zcchc11 liver)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR306530(GSM750573)
19-24nt. (ago2 brain)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR306536(GSM750579)
19-24nt. (ago2 brain)		SRR306544(GSM750587)
19-24nt. (ago2 brain)		SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		mjTestesWT3()
Testes Data. (testes)		GSM475280(GSM475280)
Mili-IP. (mili testes)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		Ago2IP504(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		SRR014235(GSM319959)
2 dpp total. (testes)		RuiDGCR8KO(Rui)
DGCR8-dependent microRNA biogenesis is essent. (dgcr8 skin)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		mjTestesWT2()
Testes Data. (testes)		SRR051939(GSM545783)
Mov10L1-associated piRNAs. (mov10L testes)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR306529(GSM750572)
19-24nt. (ago2 brain)		SRR553603(SRX182809)
source: Spermatids. (Spermatids)		SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR116846(GSM678422)
Small RNA deep sequencing from mouse epididym. (epididymis)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR206942(GSM723283)
other. (brain)		SRR038743(GSM527278)
small RNA-Seq. (dicer brain)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR306528(GSM750571)
19-24nt. (ago2 brain)		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)		SRR073954(GSM629280)
total RNA. (blood)		SRR206940(GSM723281)
other. (brain)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR037902(GSM510438)
testes_rep3. (testes)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		SRR306543(GSM750586)
19-24nt. (ago2 brain)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		GSM510456(GSM510456)
newborn_rep12. (total RNA)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR037914(GSM510451)
newborn_rep7. (total RNA)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR685339(GSM1079783)
Small RNAs (15-50 nts in length) from immorta. (cell line)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR029039(GSM433291)
25dpp_homo_tdrd6-KO. (tdrd6 testes)		SRR014229(GSM319953)
10 dpp MILI. (mili testes)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR306531(GSM750574)
19-24nt. (ago2 brain)		SRR059775(GSM562837)
MEF_Drosha. (MEF)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)		SRR014231(GSM319955)
16.5 dpc total. (testes)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)		SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)		SRR553585(SRX182791)
source: Kidney. (Kidney)		SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		SRR037937(GSM510475)
293cand2. (cell line)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR059770(GSM562832)
Treg_Dicer. (spleen)		GSM510454(GSM510454)
newborn_rep10. (total RNA)		SRR038741(GSM527276)
small RNA-Seq. (brain)		SRR037925(GSM510463)
e9p5_rep3. (embryo)		SRR095853(SRX039174)
sequencing of miRNA from wild type and diseas. (heart)		GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		SRR346415(SRX098256)
source: Testis. (Testes)		SRR042488(GSM539880)
mouse BclXL germinal center B cells [BalbC] [09-002]. (B cell)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		SRR059767(GSM562829)
DN3_Dicer. (thymus)		SRR095855BC5(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR014236(GSM319960)
10 dpp total. (testes)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR059772(GSM562834)
CD4_Drosha. (spleen)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR037928(GSM510466)
e7p5_rep2. (embryo)		SRR039610(GSM527274)
small RNA-Seq. (brain)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		GSM261957(GSM261957)
oocytesmallRNA-19to24. (oocyte)		SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)
.......CTGTCACGTCCTTCAC........................................................................................................................................................................................................................................................................................ 163.000.00----------------------3.00------------------------------------------------------------------------------------
.........................................................................................................................................................................................................................................CCTCCCTTCTCTGGTTGGT................................................... 192.000.00--------------------------------------------------------------------------------------1.00---------1.00----------
................................................................................AGGCTCAGGCAAGCGCGCG............................................................................................................................................................................................................ 191.000.00-----------------------------------------------------------------------1.00-----------------------------------
...................................................................................................................GACATCATCCACTGTCGCT......................................................................................................................................................................... 191.000.00--1.00--------------------------------------------------------------------------------------------------------
.....................................................................CTTGGTCCCACAGGCCAAC....................................................................................................................................................................................................................... 191.000.00------------------------1.00----------------------------------------------------------------------------------
.....................ACAAGGTCCTCCGGGATTGT...................................................................................................................................................................................................................................................................... 201.000.00-------------------------------------------------1.00---------------------------------------------------------
........................................................................GGTCCCACAGGCTCAGGG..................................................................................................................................................................................................................... 181.000.00--1.00--------------------------------------------------------------------------------------------------------
.....................ACAAGGTCCTCCGGGAACGG...................................................................................................................................................................................................................................................................... 201.000.00-----------1.00-----------------------------------------------------------------------------------------------
.........................GGTCCTCCGGGACGGACA.................................................................................................................................................................................................................................................................... 181.000.00-----------------------------------------------------------------------------------1.00-----------------------
.................................................................................................GCCGCCATGCCACCACGAC........................................................................................................................................................................................... 191.000.00----------------1.00------------------------------------------------------------------------------------------
.................................................................................................GCCGCCATGCCACCAGCTGACATCAT.................................................................................................................................................................................... 2611.001.00---------1.00-------------------------------------------------------------------------------------------------
.....................................................................................................................CATCATCCACTGTATCA......................................................................................................................................................................... 171.000.00-----------1.00-----------------------------------------------------------------------------------------------
.......CTGTCACGTCCTTCACCT...................................................................................................................................................................................................................................................................................... 181.000.00----------------------------1.00------------------------------------------------------------------------------
................................................................................................................................................................................................................................................TCTCTGGTTGCAGGTCCTGCAT......................................... 2211.001.00-----------------------------1.00-----------------------------------------------------------------------------
.....................................................................................CAGGCAAGCGCCGCCGCGC....................................................................................................................................................................................................... 191.000.00---------------------------------------1.00-------------------------------------------------------------------
................................................................CAGCCCTTGGTCCCACATG............................................................................................................................................................................................................................ 191.000.00--1.00--------------------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................................................................GACTATCAGCGGTACCGGAGCAACA................ 2511.001.00-------------------------------------------------------------------------------------------1.00---------------
......................................................................................................CATGCCACCAGCTGACAGA...................................................................................................................................................................................... 191.000.00------------------------1.00----------------------------------------------------------------------------------
.................................................................................................................................................................................................................................TGTCCTCCCCTCCCTTCT............................................................ 1850.400.40----------------------------------------------------------------------------------------------------------0.40