ID: uc008zhq.7
GENE: Ddx54(8)
chr5:121070339-121070530+


(2)
AGO1.ip 		(2)
AGO2.ip 		(2)
AGO3.ip 		(5)
B-CELL 		(10)
BRAIN 		(1)
CELL-LINE 		(1)
DCR.mut 		(1)
DGCR8.mut 		(4)
EMBRYO 		(7)
ESC 		(1)
HEART 		(1)
LIVER 		(1)
LUNG 		(9)
OTHER 		(1)
OTHER.mut 		(2)
PIWI.ip 		(1)
PIWI.mut 		(5)
SKIN 		(3)
SPLEEN 		(11)
TESTES 		(1)
THYMUS 		(1)
TOTAL-RNA

Sense strand
GCTGTTCTCAGCTACACTGCCCAAGCTGCTGGTGGAATTTGCACGGGCAGGTGAGCCAGTGAGTGGGGCGTGGTGCTGGACTCGGGGTGGGGGTGGGGTCTGCCCCTTCATGACCCCTGCAATCCCCCCCGCACCCCAACAGGCCTCACAGAGCCCGTGCTCATCCGCCTGGACGTAGACTCCAAGCTCAAT
...................................................................................((((((.(((.((((..(((...............)))..))))))).)))))).......................................................
............................................................................77...............................................................142................................................
SizePerfect hitTotal NormPerfect NormAgo3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		mjTestesWT1()
Testes Data. (testes)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR059766(GSM562828)
DN3_Drosha. (thymus)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR346415(SRX098256)
source: Testis. (Testes)		Ago2IP517(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR059775(GSM562837)
MEF_Drosha. (MEF)		SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)		SRR553604(SRX182810)
source: Spermatocytes. (Spermatocytes)		SRR553584(SRX182790)
source: Heart. (Heart)		SRR059768(GSM562830)
Treg_control. (spleen)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR042455(GSM539847)
mouse plasma cells [09-002]. (blood)		SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)		SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		SRR042443(GSM539835)
mouse pro B cells [09-002]. (b cell)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR038740(GSM527275)
small RNA-Seq. (dicer brain)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)		GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		SRR037902(GSM510438)
testes_rep3. (testes)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR037914(GSM510451)
newborn_rep7. (total RNA)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR402761(SRX117944)
source: ES E14 male cells. (ESC)		SRR553603(SRX182809)
source: Spermatids. (Spermatids)		SRR065053(SRR065053)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR345204(SRX097265)
source: size fractionated RNA from mouse hipp. (brain)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR685339(GSM1079783)
Small RNAs (15-50 nts in length) from immorta. (cell line)
......................................TTGCACGGGCAGGTGAGCCAG.....................................................................................................................................21110.0010.00---10.00--------------------------------------------------------
.................................................................................TCGGGGTGGGGGTGGGGTCTGCC........................................................................................2319.009.00--1.00--2.00-----2.00-------1.00--1.00-----1.00--1.00----------------------------
.......................................................................................................................CAATCCCCCCCGCACCCCAACA...................................................2219.009.004.00-1.00--1.00----1.00-1.00-------1.00---------------------------------------
.................................................................................TCGGGGTGGGGGTGGGGTCTG..........................................................................................2119.009.00-5.00--2.001.00----1.00-------------------------------------------------
........................................................................................................................AATCCCCCCCGCACCCCAACAG..................................................2217.007.00-3.00-----1.00---1.00----1.00-----------------1.00-------------------------
.......................................................................................................................CAATCCCCCCCGCACCCCAACT...................................................2216.001.003.00-1.00-1.00-----1.00-------------------------------------------------
........................................................................................................................AATCCCCCCCGCACCCCAACAGT.................................................2315.007.001.001.00--1.00-----------1.00------------------------------1.00------------
.......................................................................................................................CAATCCCCCCCGCACCCCAACC...................................................2214.001.002.00-1.00--1.00------------------------------------------------------
..........................TGCTGGTGGAATTTGCACGGGC................................................................................................................................................2213.003.00-2.00-------------------------------------1.00--------------------
..........................TGCTGGTGGAATTTGCACGGG.................................................................................................................................................2112.002.00-1.00------------------------------1.00---------------------------
.......................................................................................................................CAATCCCCCCCGCACCCCAA.....................................................2012.002.00--1.00-----------------1.00---------------------------------------
........................................................................................................................AATCCCCCCCGCACCCCAACA...................................................2112.002.001.00-1.00---------------------------------------------------------
......................AAGCTGCTGGTGGAATT.........................................................................................................................................................1712.002.00---------2.00--------------------------------------------------
..................................GAATTTGCACGGGCAG..............................................................................................................................................1612.002.00--------2.00---------------------------------------------------
.......................................................................................................................CAATCCCCCCCGCACCCCAAT....................................................2112.002.002.00-----------------------------------------------------------
........................................................................................................................AATCCCCCCCGCACCCCAAC....................................................2012.002.00--1.00-----------------------------------1.00---------------------
........................................................................................................................AATCCCCCCCGCACCCCCACA...................................................212.000.001.00-1.00---------------------------------------------------------
................................................................................................................................................................TCATCCGCCTGGACGTAGACTCCAAG......2612.002.00------------------2.00-----------------------------------------
.................................................................................TCGGGGTGGGGGTGGGGTCT...........................................................................................2021.501.50-----1.00------0.50-----------------------------------------------
......................AAGCTGCTGGTGGAATTT........................................................................................................................................................1811.001.00------------------------------------------------------1.00-----
..................................................................................................................................................................ATCCGCCTGGACGTAGACTC..........2011.001.00--------------------------1.00---------------------------------
........................................................................................................................AATCCCCCCCGCACCCCAAT....................................................201.000.00--1.00---------------------------------------------------------
.................................................................................TCGGGGTGGGGGTGGGGTCTGCCT.......................................................................................2411.009.00--------------1.00---------------------------------------------
........................................................................................................................AATCCCCCCCGCACCCCAACAGA.................................................2311.007.00-1.00----------------------------------------------------------
...............................................................................ACTCGGGGTGGGGGTGGGGTCTGT.........................................................................................241.000.00----1.00-------------------------------------------------------
................................TGGAATTTGCACGGGCAGG.............................................................................................................................................1911.001.00-----------------------1.00------------------------------------
........................................................................................................................AATCCCCCCCGCACCGGA......................................................181.000.00--------------------------------------------1.00---------------
..................................................................................CGGGGTGGGGGTGGGGTCTGC.........................................................................................2111.001.00--------------1.00---------------------------------------------
.................................................................................TCGGGGTGGGGGTGGGGTCTGCA........................................................................................231.000.00--1.00---------------------------------------------------------
.................................................................................TCGGGGTGGGGGTGGTATA............................................................................................191.000.00-------------------------------------------------------1.00----
........................................................................................GGGGGTGGGGTCTGCGGG......................................................................................181.000.00---------------1.00--------------------------------------------
...............................GTGGAATTTGCACGGGCAGGCC...........................................................................................................................................221.000.00---------------------1.00--------------------------------------
................................TGGAATTTGCACGGGCAG..............................................................................................................................................1811.001.00-------------------1.00----------------------------------------
.......................................................................................................................................................AGCCCGTGCTCATCCGCCTGGACGTAGACTC..........3111.001.00----------------------------------------1.00-------------------
....................CCAAGCTGCTGGTGGAATTTGCACGGGC................................................................................................................................................2811.001.00-------------------------1.00----------------------------------
.................TGCCCAAGCTGCTGGTGGAATTTGCAC....................................................................................................................................................2711.001.00------------------------------------1.00-----------------------
.........................................................................................................................ATCCCCCCCGCACCCCAA.....................................................1811.001.00-------1.00----------------------------------------------------
.................................................................................TCGGGGTGGGGGTGGATA.............................................................................................181.000.00------1.00-----------------------------------------------------
..................................................................................CGGGGTGGGGGTGGGGTCTGCC........................................................................................2211.001.00------------------------1.00-----------------------------------
..................................................GTGAGCCAGTGAGTGGGGCGTGGTGCTGGACTCGGGGTGGGGGTGGGGTCTGCCCCTTCATGACCCCTGCAATCCCCCCCGCACCCCAAGAG..................................................921.000.00--------------------------------------------------1.00---------
.................................................................................TCGGGGTGGGGGTGGGGTCTGAATT......................................................................................2511.009.00----------------------------------------------------1.00-------
.....................CAAGCTGCTGGTGGAATTTG.......................................................................................................................................................2011.001.00------------------------------------------1.00-----------------
...............................GTGGAATTTGCACGGGCAG..............................................................................................................................................1911.001.00-----------------------------------1.00------------------------
................................................................................CTCGGGGTGGGGGTGGGGTCTGT.........................................................................................231.000.00----1.00-------------------------------------------------------
.................................GGAATTTGCACGGGCAGGCCT..........................................................................................................................................211.000.00------------------------------1.00-----------------------------
.......................................................................................................................CAATCCCCCCCGCACCCCAAAT...................................................2211.002.00-1.00----------------------------------------------------------
.......................................................................................................................CAATCCCCCCCGCACCCCAATTT..................................................2311.002.00------------------------------------------------1.00-----------
........................GCTGCTGGTGGAATTTGCACGGG.................................................................................................................................................2311.001.00---------------1.00--------------------------------------------
............................CTGGTGGAATTTGCACGGGCAGG.............................................................................................................................................2311.001.00-----------------------------1.00------------------------------
.................TGCCCAAGCTGCTGGTGGAA...........................................................................................................................................................2011.001.00-------1.00----------------------------------------------------
......................AAGCTGCTGGTGGAAAGAA.......................................................................................................................................................191.000.00----1.00-------------------------------------------------------
....................................................................................GGGTGGGGGTGGGGTCTGCCCC......................................................................................2211.001.00-------------------------------------------1.00----------------
................................................................................CTCGGGGTGGGGGTGGGGTCTGCC........................................................................................2411.001.00---------------------------------------------------1.00--------
...................................................................GCGTGGTGCTGGACTCGGGGTGGG.....................................................................................................2411.001.00-----------------------------------------1.00------------------
.............................TGGTGGAATTTGCACGGGCAGGCCTT.........................................................................................................................................261.000.00---------------------------------1.00--------------------------
......................AAGCTGCTGGTGGAATTTGCACG...................................................................................................................................................2311.001.00---------------------------1.00--------------------------------
.............ACACTGCCCAAGCTGCTGGTGGAAT..........................................................................................................................................................2511.001.00-------1.00----------------------------------------------------
...................................................................................................................................................................TCCGCCTGGACGTAGAC............1711.001.00-----------------1.00------------------------------------------
.........................CTGCTGGTGGAATTTGCACGGGCAGG.............................................................................................................................................2611.001.00-----------------------------------------------------1.00------
.....................CAAGCTGCTGGTGGAATTTGCACGGTA................................................................................................................................................271.000.00------------1.00-----------------------------------------------
...............................................................TGGGGCGTGGTGCTGGCG...............................................................................................................181.000.00---------------------------------------------1.00--------------
.......................................................................................................................CAATCCCCCCCGCACCCCAAC....................................................2111.001.001.00-----------------------------------------------------------
.........................................................................................................................ATCCCCCCCGCACCCCAACA...................................................2011.001.001.00-----------------------------------------------------------
............................CTGGTGGAATTTGCACTT..................................................................................................................................................181.000.00-------------------------------------1.00----------------------
................................................................................CTCGGGGTGGGGGTGGGGTCTGC.........................................................................................2311.001.00-------------------------------------------------1.00----------
.........................................................................................................................................................................TGGACGTAGACTCCAAGCTCAAT2311.001.00-----------------1.00------------------------------------------
...........................................................TGAGTGGGGCGTGGTTTA...................................................................................................................181.000.00--------------------------------------------------------1.00---
...........CTACACTGCCCAAGCTGCTGGT...............................................................................................................................................................2211.001.00--------1.00---------------------------------------------------
.................................................................................TCGGGGTGGGGGTGGGGTC............................................................................................1920.500.50-----0.50------------------------------------------------------
....................................ATTTGCACGGGCAGG.............................................................................................................................................1520.500.50---------------------0.50--------------------------------------
...........CTACACTGCCCAAGCTGC...................................................................................................................................................................1820.500.50---------------------------------------------------------0.50--
.......................................................................................TGGGGGTGGGGTCTGC.........................................................................................16100.100.10-----------------------------------------------------------0.10

Antisense strand
GCTGTTCTCAGCTACACTGCCCAAGCTGCTGGTGGAATTTGCACGGGCAGGTGAGCCAGTGAGTGGGGCGTGGTGCTGGACTCGGGGTGGGGGTGGGGTCTGCCCCTTCATGACCCCTGCAATCCCCCCCGCACCCCAACAGGCCTCACAGAGCCCGTGCTCATCCGCCTGGACGTAGACTCCAAGCTCAAT
...................................................................................((((((.(((.((((..(((...............)))..))))))).)))))).......................................................
............................................................................77...............................................................142................................................
SizePerfect hitTotal NormPerfect NormAgo3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		mjTestesWT1()
Testes Data. (testes)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR059766(GSM562828)
DN3_Drosha. (thymus)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR346415(SRX098256)
source: Testis. (Testes)		Ago2IP517(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR059775(GSM562837)
MEF_Drosha. (MEF)		SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)		SRR553604(SRX182810)
source: Spermatocytes. (Spermatocytes)		SRR553584(SRX182790)
source: Heart. (Heart)		SRR059768(GSM562830)
Treg_control. (spleen)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR042455(GSM539847)
mouse plasma cells [09-002]. (blood)		SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)		SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		SRR042443(GSM539835)
mouse pro B cells [09-002]. (b cell)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR038740(GSM527275)
small RNA-Seq. (dicer brain)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)		GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		SRR037902(GSM510438)
testes_rep3. (testes)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR037914(GSM510451)
newborn_rep7. (total RNA)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR402761(SRX117944)
source: ES E14 male cells. (ESC)		SRR553603(SRX182809)
source: Spermatids. (Spermatids)		SRR065053(SRR065053)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR345204(SRX097265)
source: size fractionated RNA from mouse hipp. (brain)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR685339(GSM1079783)
Small RNAs (15-50 nts in length) from immorta. (cell line)
..........................................................................................................................TCCCCCCCGCACCCCAGTGA.................................................. 201.000.00---------1.00--------------------------------------------------
...........................................................................................................................CCCCCCCGCACCCCATTGT.................................................. 191.000.00------1.00-----------------------------------------------------
...........................................................................................................................CCCCCCCGCACCCCACCCC.................................................. 191.000.00------1.00-----------------------------------------------------
.................................................................................................................................................................................GACTCCAAGCTCAATGGA 181.000.00-------------1.00----------------------------------------------
...........................................................................................................................CCCCCCCGCACCCCACGGG.................................................. 191.000.00------1.00-----------------------------------------------------
..............................................................................................................................................GCCTCACAGAGCCCGTCC................................ 181.000.00-------------1.00----------------------------------------------
............................................................................................................................CCCCCCGCACCCCAATGC.................................................. 181.000.00----------------------------------------------1.00-------------
............................................................................................................................CCCCCCGCACCCCAACA................................................... 1730.330.33----------------------------------------------------------0.33-