ID: uc008zeg.21
GENE: Gcn1l1(21)
chr5:116041874-116042123+


(1)
AGO.mut 		(2)
AGO1.ip 		(8)
AGO2.ip 		(2)
AGO3.ip 		(10)
B-CELL 		(23)
BRAIN 		(3)
CELL-LINE 		(1)
DCR.mut 		(2)
DGCR8.mut 		(9)
EMBRYO 		(8)
ESC 		(3)
FIBROBLAST 		(3)
HEART 		(2)
KIDNEY 		(10)
LIVER 		(1)
LUNG 		(4)
LYMPH 		(14)
OTHER 		(7)
OTHER.mut 		(5)
PIWI.ip 		(3)
PIWI.mut 		(6)
SKIN 		(7)
SPLEEN 		(1)
TDRD1.ip 		(24)
TESTES 		(1)
THYMUS 		(1)
TOTAL-RNA 		(1)
UTERUS

Sense strand
TTACTGCTCTCTCCACTTTGAAGGCACCTGGTGGCTGTGGCCTTTATAGGGGTTACCATGGATATGTGGTGGGCTTGGGGGCCCTGGTCCTAGACTTGAGGCTGGCTTACAATTCTGGAAGCCAGGGGGCTTTCTTTCCTCTGGGGGAAAGGTAGATCTGCCTGTGGATGTAGAACTGGCTTCTGACCCTGGTCCCTCAGGAAATAAAGAAAAAGAAAGGCATAAAAGAGGAGGTACAGCTGACCAGCAA
............................................................................................................................................((((((((.(((((((...(((.((.........)).))).))))..)))..))))))))..................................................
......................................................................................................................................135..............................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		mjLiverKO1()
Liver Data. (Zcchc11 liver)		mjLiverWT2()
Liver Data. (liver)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR553582(SRX182788)
source: Brain. (Brain)		mjLiverKO2()
Liver Data. (Zcchc11 liver)		SRR394084(GSM855970)
background strain: C57BL6/SV129cell type: KRa. (dicer cell line)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR345205(SRX097266)
source: size fractionated RNA from mouse hipp. (brain)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		mjTestesWT4()
Testes Data. (testes)		SRR402760(SRX117943)
source: ES E14 male cells. (ESC)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR345204(SRX097265)
source: size fractionated RNA from mouse hipp. (brain)		SRR402761(SRX117944)
source: ES E14 male cells. (ESC)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR073954(GSM629280)
total RNA. (blood)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		mjTestesWT2()
Testes Data. (testes)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		mjTestesWT3()
Testes Data. (testes)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)		SRR553585(SRX182791)
source: Kidney. (Kidney)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR038741(GSM527276)
small RNA-Seq. (brain)		GSM640578(GSM640578)
small RNA in the liver with paternal control. (liver)		SRR042461(GSM539853)
mouse dendritic cells [09-002]. (bone marrow)		SRR042443(GSM539835)
mouse pro B cells [09-002]. (b cell)		SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)		SRR032476(GSM485234)
sRNA_delayed_deep_sequencing. (uterus)		SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)		SRR042455(GSM539847)
mouse plasma cells [09-002]. (blood)		SRR042462(GSM539854)
mouse macrophages [09-002]. (bone marrow)		SRR042466(GSM539858)
mouse CD8+ T cells (spleen) [09-002]. (spleen)		SRR042474(GSM539866)
mouse embryonic stem cells [09-002]. (ESC)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)		SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)		Ago2IP517(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR042444(GSM539836)
mouse pre B cells [09-002]. (b cell)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)		SRR042472(GSM539864)
mouse iTreg cells [09-002]. (lymph)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		mjLiverKO3()
Liver Data. (Zcchc11 liver)		SRR095853(SRX039174)
sequencing of miRNA from wild type and diseas. (heart)		GSM640582(GSM640582)
small RNA in the liver with paternal control . (liver)		SRR023851(GSM307160)
ZHBT-c412hsmallrna_rep1. (cell line)		GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)		SRR037920(GSM510458)
e12p5_rep2. (embryo)		SRR206942(GSM723283)
other. (brain)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		SRR042451(GSM539843)
mouse B cells activated in vitro with LPS/aIgD-Dextran [09-002]. (b cell)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		SRR116846(GSM678422)
Small RNA deep sequencing from mouse epididym. (epididymis)		SRR014230(GSM319954)
10 dpp Dnmt3L-KO MILI. (mili testes)		SRR553584(SRX182790)
source: Heart. (Heart)		SRR042477(GSM539869)
mouse brain tissue [09-002]. (brain)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR345206(SRX097267)
source: size fractionated RNA from mouse hipp. (brain)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR037902(GSM510438)
testes_rep3. (testes)		SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)		SRR042446(GSM539838)
mouse mature B cells (spleen) replicate 1 [09-002]. (b cell)		SRR095855BC6(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		GSM416732(GSM416732)
MEF. (cell line)		GSM509276(GSM509276)
small RNA cloning by length. (testes)		SRR306539(GSM750582)
19-24nt. (ago2 brain)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR306526(GSM750569)
19-24nt. (ago2 brain)		mjLiverWT3()
Liver Data. (liver)		SRR042445(GSM539837)
mouse immature B cells [09-002]. (b cell)		mjTestesKO6()
Testes Data. (Zcchc11 testes)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		GSM509280(GSM509280)
small RNA cloning by length. (testes)		SRR059770(GSM562832)
Treg_Dicer. (spleen)		GSM475280(GSM475280)
Mili-IP. (mili testes)		SRR037901(GSM510437)
testes_rep2. (testes)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		SRR042467(GSM539859)
mouse T cells activated in vitro with Concanavalin A [09-002]. (spleen)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		SRR059766(GSM562828)
DN3_Drosha. (thymus)		SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR042487(GSM539879)
mouse BclXL B activated with LPS/IL4 [BalbC] [09-002]. (spleen)		SRR525238(SRA056111/SRX170314)
Second IgG control. (Blood)		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)		SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)		SRR206940(GSM723281)
other. (brain)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		SRR037912(GSM510449)
newborn_rep5. (total RNA)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR077865(GSM637802)
18-30 nt small RNAs. (liver)		Ago2IP504(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		mjTestesKO5()
Testes Data. (Zcchc11 testes)		SRR037906(GSM510442)
brain_rep3. (brain)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		SRR306544(GSM750587)
19-24nt. (ago2 brain)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		SRR306528(GSM750571)
19-24nt. (ago2 brain)
...........................................................................................................................................TCTGGGGGAAAGGTAGATCTGC.........................................................................................221107.00107.0011.0013.007.00--3.002.00--4.001.004.004.006.003.003.003.004.00---1.001.002.001.00--1.001.001.00---1.00-1.00--1.003.002.001.00---2.001.00----1.00--1.00--1.002.002.001.00-----1.00---1.00-------1.00-----------1.00----------1.00----1.001.00-------1.00------1.00-1.001.00----
...........................................................................................................................................TCTGGGGGAAAGGTAGATCTGCC........................................................................................23145.0045.006.002.003.00--2.001.007.00-1.002.00-1.00---2.00--2.00-1.00----4.001.00-1.00------2.00-------------------1.001.00--1.00-----------1.00-------1.00------------------1.00-----------1.00------------------
...........................................................................................................................................TCTGGGGGAAAGGTAGATCT...........................................................................................20136.0036.00----9.00-3.00--------1.00---1.003.00-3.00-2.00------1.00---1.00------1.00---1.00--2.001.001.001.001.00-------1.00-1.00--------------------------------1.00-----------------1.00---------------
...........................................................................................................................................TCTGGGGGAAAGGTAGATCTGT.........................................................................................22122.0013.00---18.00-1.00--------------------------------------------------1.00-------------------------1.00-------------------------------------------1.00---
...........................................................................................................................................TCTGGGGGAAAGGTAGATCTG..........................................................................................21113.0013.001.00----1.00----1.00----1.00-1.00-----2.00------1.00---2.00---1.00---------1.00------------------------------------------1.00--------------------------------------
...........................................................................................................................................TCTGGGGGAAAGGTAGATC............................................................................................1919.009.00----3.00--------------1.001.00--------------------------1.00--1.00------------1.00----------------------------1.00-------------------------------------
...........................................................................................................................................TCTGGGGGAAAGGTAGATCTGCAT.......................................................................................2418.00107.00--6.00----------------------------------------1.00---------------------------------1.00----------------------------------------------------
..........................................................................................................................................................................................................AATAAAGAAAAAGAAAGGCA............................2017.007.00--------7.00-------------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................TGTGGATGTAGAACTGG.......................................................................1726.006.001.00-------------2.50--------------------------2.00-----------------------0.50----------------------------------------------------------------
...........................................................................................................................................TCTGGGGGAAAGGTAGATCTGCCA.......................................................................................2415.0045.001.00---------1.001.00-------------1.00--------------------------------------------------------------------1.00-----------------------------------
...................................................................................................................................................................................CTTCTGACCCTGGTCCCTCAGT.................................................2215.001.001.00--------1.00--------1.00----------------------------------------------------------------1.00--------------------------------------------1.00-
...........................................................................................................................................TCTGGGGGAAAGGTAGATCTGCA........................................................................................2314.00107.00-----------1.00----------------------1.00---------1.00--------1.00----------------------------------------------------------------------------
................................................................................................................................................................................TGGCTTCTGACCCTGGTCCCTCAGA.................................................254.000.00-----------------------------------------------------------------1.00-------1.00---------------------1.00----------------------1.00-----------
..........................................................................................................................................CTCTGGGGGAAAGGTAGATCTGC.........................................................................................2314.004.001.001.00----1.00--------------1.00------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................TGGCTTCTGACCCTGGTCCCTCAGT.................................................253.000.00---------1.00-------------------1.00-------------------------------------------------------------------------------------------1.00--------
............................................................................................................................................CTGGGGGAAAGGTAGATCTGC.........................................................................................2113.003.00-1.002.00-------------------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................TCTGGGGGAAAGGTAGATCTGA.........................................................................................2213.0013.00-----1.00-------------------------------------------------------------------------------------------1.00----1.00---------------------------
..................................................................................................................................................................................................................................AGAGGAGGTACAGCTGAC......1813.003.00------------------------------------------2.00-------------------------------1.00-------------------------------------------------------
...................................................................................................................................................................................CTTCTGACCCTGGTCCCTCAGA.................................................2213.001.00-1.00---1.00----------------------1.00-----------------------------------------------------------------------------------------------------
.................................................................................................................TCTGGAAGCCAGGGGGACG......................................................................................................................192.000.00--------------------------------2.00-------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................TAAAAGAGGAGGTACAGCTGACCAGC..2612.002.00--------------------------------------------------------------------------------------1.00--------------------------1.00----------------
...........................................................................................................................................TCTGGGGGAAAGGTAGAT.............................................................................................1812.002.00------1.00-----------------1.00---------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................AGGAGGTACAGCTGACCAGC..2012.002.00---------------------------1.00------------------------------------------------------------------------------------1.00-----------------
..........................................................................................................................................CTCTGGGGGAAAGGTAGATCTGCC........................................................................................2412.002.001.00------------------------------------------------------------------1.00--------------------------------------------------------------
...........................................................................................................................................TCTGGGGGAAAGGTAGATCTAA.........................................................................................2212.0036.00-------------------------------------------------------------------------------1.00-------1.00------------------------------------------
.............................................................................................................................................TGGGGGAAAGGTAGATCTGCCTGT.....................................................................................2412.002.00------------------------------------------------1.00-------------------------------------------------------------1.00-------------------
........................................................................................................................................TCCTCTGGGGGAAAGGTAGATCTGC.........................................................................................2512.002.00--------------------------------------1.00-------------------------------------------------1.00-----------------------------------------
.............................................................................................................................................TGGGGGAAAGGTAGATCTGCC........................................................................................2112.002.00------1.00--------------------------------------------------------------------------------------------------------------------1.00------
.................................................................................................................................................................CTGTGGATGTAGAACTGGCTT....................................................................2112.002.00----------------------------------------------------------------2.00-----------------------------------------------------------------
...........................................................................................................................................TCTGGGGGAAAGGTAGATCTGCAA.......................................................................................2412.00107.00-----1.00-------------------------------------------------------------------------------------------------------1.00--------------------
..............................................................................................................................................................................................................................TAAAAGAGGAGGTACAGCTGACCAGCAA2812.002.00----------------------------------------------------------------------------------------------------1.00--1.00--------------------------
................................................................................................................................................................................TGGCTTCTGACCCTGGTCCCTCAGTAT...............................................271.000.00-----------------------------------------------------------------------------------------1.00----------------------------------------
...........................................................................................................................................TCTGGGGGAAAGGTAGACCT...........................................................................................201.000.00-------------------------------1.00--------------------------------------------------------------------------------------------------
.........................................................................................................................................CCTCTGGGGGAAAGGTAGATCTGC.........................................................................................2411.001.00-1.00--------------------------------------------------------------------------------------------------------------------------------
........................................................................................................................................TCCTCTGGGGGAAAGGTAGATCTG..........................................................................................2411.001.00-------------------------1.00--------------------------------------------------------------------------------------------------------
...................................................................GGTGGGCTTGGGGGCCCGGAC..................................................................................................................................................................211.000.00--------------------------------------------1.00-------------------------------------------------------------------------------------
.........................................................................................................................................CCTCTGGGGGAAAGGTAGA..............................................................................................1911.001.001.00---------------------------------------------------------------------------------------------------------------------------------
....................................................................................................GCTGGCTTACAATTCTGGA...................................................................................................................................1911.001.00------------------------------------1.00---------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................TAAAAGAGGAGGTACAGCT.........1911.001.00---------------------1.00------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................ACTGGCTTCTGACCCTGGTCCA......................................................221.000.00-----------------------------------------------------------------------------------------------------------------------1.00----------
...........................................................................................................................................TCTGGGGGAAAGGTAGATCTGCT........................................................................................2311.00107.00----------------------------------------1.00-----------------------------------------------------------------------------------------
...........................................................................................................................................TCTGGGGGAAAGGTAGATCAGCC........................................................................................2311.009.00-------1.00--------------------------------------------------------------------------------------------------------------------------
........................................................................................................................................TCCTCTGGGGGAAAGGTA................................................................................................1811.001.00-----------------------------------------------1.00----------------------------------------------------------------------------------
..........................................................................................................................................CTCTGGGGGAAAGGTAGATCTAT.........................................................................................231.000.00-------------------------------------------------------------------------------------1.00--------------------------------------------
.............................................................................................................................................TGGGGGAAAGGTAGATCTGC.........................................................................................2011.001.00-----------------------------------1.00----------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................AGGAGGTACAGCTGAAAA....181.000.00-------------------------------------------------------------------------------------------------------------------------------1.00--
...................................................................................................................................................................................CTTCTGACCCTGGTCCCTCAGCAT...............................................2411.001.00-1.00--------------------------------------------------------------------------------------------------------------------------------
............................................................................................................................................CTGGGGGAAAGGTAGATCTGCCTGT.....................................................................................2511.001.00------------------1.00---------------------------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................................AGGCATAAAAGAGGAGGTACAGCT.........2411.001.00--------------------------------------------------------------------------------------------------1.00-------------------------------
..........................................................................................TAGACTTGAGGCTGGCTTACAATTC.......................................................................................................................................2511.001.00-------------------------1.00--------------------------------------------------------------------------------------------------------
...............................................................................................................................GGCTTTCTTTCCTCTGGGGGAAAGGTAGATCTGCCTGTGGATGTAGAACTGGCTTCTGACCCTGGTCCCTCAG..................................................7311.001.00-------------------------------------1.00--------------------------------------------------------------------------------------------
...................................................................................................................................................................................CTTCTGACCCTGGTCCCTCAGTTAA..............................................2511.001.00-1.00--------------------------------------------------------------------------------------------------------------------------------
......................................................................................................................................................................................CTGACCCTGGTCCCTCAGA.................................................191.000.00---------------------------------1.00------------------------------------------------------------------------------------------------
............................................................................................................................................CTGGGGGAAAGGTAGATCTGCC........................................................................................2211.001.001.00---------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................CTTCTGACCCTGGTCCCTCAGTTT...............................................2411.001.00-------------------------------------------1.00--------------------------------------------------------------------------------------
..........................................................TGGATATGTGGTGGGGCTG.............................................................................................................................................................................191.000.00--------------------------------------------------------------------------------------------------------1.00-------------------------
............................................................................................................................................................................................................TAAAGAAAAAGAAAGGCATAAAA.......................2311.001.00------------1.00---------------------------------------------------------------------------------------------------------------------
.....GCTCTCTCCACTTTGGT....................................................................................................................................................................................................................................171.000.00------------------------------1.00---------------------------------------------------------------------------------------------------
.............................................................................................................................................TGGGGGAAAGGTAGATCTGCT........................................................................................2111.001.00-1.00--------------------------------------------------------------------------------------------------------------------------------
...CTGCTCTCTCCACTTAT......................................................................................................................................................................................................................................171.000.00--------------------------------------------------------------------1.00-------------------------------------------------------------
.........................................................................................................................................................................................................AAATAAAGAAAAAGAAAGGCAT...........................2211.001.00---------------------------------------------------------------------------1.00------------------------------------------------------
...................................................................................................................................................................................CTTCTGACCCTGGTCCCTCAG..................................................2111.001.00-----------------------------------------------------------------------1.00----------------------------------------------------------
............................................................................................................................................................................GAACTGGCTTCTGACAT.............................................................171.000.00------------------------------1.00---------------------------------------------------------------------------------------------------
.....................................................................................................................................................AGGTAGATCTGCCTGTGGATGTAGAACTGGCT.....................................................................3211.001.001.00---------------------------------------------------------------------------------------------------------------------------------
........................................................................................................................................TCCTCTGGGGGAAAGGTAGATC............................................................................................2211.001.00----------------------------1.00-----------------------------------------------------------------------------------------------------
............................................................................................................................................CTGGGGGAAAGGTAGATCTGCCTGTGGATG................................................................................3011.001.00--------------------------------1.00-------------------------------------------------------------------------------------------------
.............................................................................................................................................TGGGGGAAAGGTAGATCTGCCTG......................................................................................2311.001.00------------------1.00---------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................TAAAAGAGGAGGTACAGCTGACCAGCA.2711.001.00-------------------------------------------------------1.00--------------------------------------------------------------------------
.........................................................................................................................................CCTCTGGGGGAAAGGTAGATC............................................................................................2111.001.00------------------1.00---------------------------------------------------------------------------------------------------------------
........................................................................................................................................TCCTCTGGGGGAAAGGTAGATCTGCCTGTGGATGTAGAACTGGCTTCTGACCCTGGTCCCTCAG..................................................6411.001.00-------------------------------------1.00--------------------------------------------------------------------------------------------
........................................................................................................................................TCCTCTGGGGGAAAGGTAGATCTGT.........................................................................................2511.001.00-1.00--------------------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................................................................AAAGAGGAGGTACAGCTGACCAGCAA2611.001.00--------------------------------------------------------------------------------------------------------------------1.00-------------
..................................................................................................................................................................................GCTTCTGACCCTGGTCCCTCAGTT................................................241.000.00-1.00--------------------------------------------------------------------------------------------------------------------------------
...............................................................................................TTGAGGCTGGCTTACAATTCTGGA...................................................................................................................................2411.001.00---------------------------------1.00------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................TAAAAGAGGAGGTACAGCTGACCAGCAT2811.001.00-------------------------------------------------------1.00--------------------------------------------------------------------------
...........................................................................................................................................TCTGGGGGAAAGGTAGATCTGAA........................................................................................2311.0013.00---------------------------------------------------------------------------------------------1.00------------------------------------
...........................................................................................................................................TCTGGGGGAAAGGTAGATCTGCCTGT.....................................................................................2611.001.00----------1.00-----------------------------------------------------------------------------------------------------------------------
...............................................................................................................................GGCTTTCTTTCCTCTGGGGGAAAGGTAGATCTGCCTGTGGATGTAGAACTGGCTTCTGACCCTGGTCCCTCCG..................................................731.000.00-------------------------------------1.00--------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................TAAAAGAGGAGGTACAGCTGACCAT...251.000.00--------------------------------------------------------------1.00-------------------------------------------------------------------
............................................................................................................................................................................................................................CATAAAAGAGGAGGTACAGCTGACCAGCA.2911.001.00---------------------------------------------------------------------1.00------------------------------------------------------------
...........................................................................................................................................TCTGGGGGAAAGGTAGATCTGG.........................................................................................2211.0013.00-------------------------------------------------------------1.00--------------------------------------------------------------------
.....................................................................................................................................................................................................................................GGAGGTACAGCTGACCAGCAA2111.001.00-------------------------1.00--------------------------------------------------------------------------------------------------------
............................................................................................................................................................................................................TAAAGAAAAAGAAAGGCATAAAAGA.....................2511.001.00------------------------------------------------------1.00---------------------------------------------------------------------------
......................................................................................................................................................................................................................GAAAGGCATAAAAGAGGAGGTACAGCT.........2711.001.00--------------------------------------------------------------1.00-------------------------------------------------------------------
..................................................................................................................................................................................GCTTCTGACCCTGGTCCCTCAGT.................................................231.000.00------------------------------------------------------------------------------------------------------------------------1.00---------
................................................................................................................................................................................TGGCTTCTGACCCTGGTCCCTCCGA.................................................251.000.00----------------------------------------------------------------------------1.00-----------------------------------------------------
...........................................................................................................................................TCTGGGGGAAAGGTAGATCTGCCAT......................................................................................2511.0045.00------------------------------------------------------------------------------------------------------------1.00---------------------
...........................................................................................................................................TCTGGGGGAAAGGTAGATCG...........................................................................................2011.009.00----------------------------------------------------1.00-----------------------------------------------------------------------------
.........................................................................................................................................................AGATCTGCCTGTGGATGTAGAACTGGCTT....................................................................2911.001.00---------------------------------------------------------------------------------1.00------------------------------------------------
............................................................................................................................................CTGGGGGAAAGGTAGATCT...........................................................................................1920.500.50---------------------------------------------------------------------------------------------------------------------------------0.50
...........................................................................................................................................................................AGAACTGGCTTCTGACCC.............................................................1820.500.50---------------------------0.50------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................AAAGAAAAAGAAAGGCATA..........................1930.330.33----------0.33-----------------------------------------------------------------------------------------------------------------------
.............................................................................................................................................................CTGCCTGTGGATGTAG.............................................................................1650.200.20----------------------------0.20-----------------------------------------------------------------------------------------------------
.................................................................................................................................................................CTGTGGATGTAGAAC..........................................................................1580.120.12------0.12---------------------------------------------------------------------------------------------------------------------------

Antisense strand
TTACTGCTCTCTCCACTTTGAAGGCACCTGGTGGCTGTGGCCTTTATAGGGGTTACCATGGATATGTGGTGGGCTTGGGGGCCCTGGTCCTAGACTTGAGGCTGGCTTACAATTCTGGAAGCCAGGGGGCTTTCTTTCCTCTGGGGGAAAGGTAGATCTGCCTGTGGATGTAGAACTGGCTTCTGACCCTGGTCCCTCAGGAAATAAAGAAAAAGAAAGGCATAAAAGAGGAGGTACAGCTGACCAGCAA
............................................................................................................................................((((((((.(((((((...(((.((.........)).))).))))..)))..))))))))..................................................
......................................................................................................................................135..............................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		mjLiverKO1()
Liver Data. (Zcchc11 liver)		mjLiverWT2()
Liver Data. (liver)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR553582(SRX182788)
source: Brain. (Brain)		mjLiverKO2()
Liver Data. (Zcchc11 liver)		SRR394084(GSM855970)
background strain: C57BL6/SV129cell type: KRa. (dicer cell line)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR345205(SRX097266)
source: size fractionated RNA from mouse hipp. (brain)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		mjTestesWT4()
Testes Data. (testes)		SRR402760(SRX117943)
source: ES E14 male cells. (ESC)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR345204(SRX097265)
source: size fractionated RNA from mouse hipp. (brain)		SRR402761(SRX117944)
source: ES E14 male cells. (ESC)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR073954(GSM629280)
total RNA. (blood)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		mjTestesWT2()
Testes Data. (testes)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		mjTestesWT3()
Testes Data. (testes)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)		SRR553585(SRX182791)
source: Kidney. (Kidney)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR038741(GSM527276)
small RNA-Seq. (brain)		GSM640578(GSM640578)
small RNA in the liver with paternal control. (liver)		SRR042461(GSM539853)
mouse dendritic cells [09-002]. (bone marrow)		SRR042443(GSM539835)
mouse pro B cells [09-002]. (b cell)		SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)		SRR032476(GSM485234)
sRNA_delayed_deep_sequencing. (uterus)		SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)		SRR042455(GSM539847)
mouse plasma cells [09-002]. (blood)		SRR042462(GSM539854)
mouse macrophages [09-002]. (bone marrow)		SRR042466(GSM539858)
mouse CD8+ T cells (spleen) [09-002]. (spleen)		SRR042474(GSM539866)
mouse embryonic stem cells [09-002]. (ESC)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)		SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)		Ago2IP517(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR042444(GSM539836)
mouse pre B cells [09-002]. (b cell)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)		SRR042472(GSM539864)
mouse iTreg cells [09-002]. (lymph)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		mjLiverKO3()
Liver Data. (Zcchc11 liver)		SRR095853(SRX039174)
sequencing of miRNA from wild type and diseas. (heart)		GSM640582(GSM640582)
small RNA in the liver with paternal control . (liver)		SRR023851(GSM307160)
ZHBT-c412hsmallrna_rep1. (cell line)		GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)		SRR037920(GSM510458)
e12p5_rep2. (embryo)		SRR206942(GSM723283)
other. (brain)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		SRR042451(GSM539843)
mouse B cells activated in vitro with LPS/aIgD-Dextran [09-002]. (b cell)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		SRR116846(GSM678422)
Small RNA deep sequencing from mouse epididym. (epididymis)		SRR014230(GSM319954)
10 dpp Dnmt3L-KO MILI. (mili testes)		SRR553584(SRX182790)
source: Heart. (Heart)		SRR042477(GSM539869)
mouse brain tissue [09-002]. (brain)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR345206(SRX097267)
source: size fractionated RNA from mouse hipp. (brain)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR037902(GSM510438)
testes_rep3. (testes)		SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)		SRR042446(GSM539838)
mouse mature B cells (spleen) replicate 1 [09-002]. (b cell)		SRR095855BC6(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		GSM416732(GSM416732)
MEF. (cell line)		GSM509276(GSM509276)
small RNA cloning by length. (testes)		SRR306539(GSM750582)
19-24nt. (ago2 brain)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR306526(GSM750569)
19-24nt. (ago2 brain)		mjLiverWT3()
Liver Data. (liver)		SRR042445(GSM539837)
mouse immature B cells [09-002]. (b cell)		mjTestesKO6()
Testes Data. (Zcchc11 testes)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		GSM509280(GSM509280)
small RNA cloning by length. (testes)		SRR059770(GSM562832)
Treg_Dicer. (spleen)		GSM475280(GSM475280)
Mili-IP. (mili testes)		SRR037901(GSM510437)
testes_rep2. (testes)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		SRR042467(GSM539859)
mouse T cells activated in vitro with Concanavalin A [09-002]. (spleen)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		SRR059766(GSM562828)
DN3_Drosha. (thymus)		SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR042487(GSM539879)
mouse BclXL B activated with LPS/IL4 [BalbC] [09-002]. (spleen)		SRR525238(SRA056111/SRX170314)
Second IgG control. (Blood)		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)		SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)		SRR206940(GSM723281)
other. (brain)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		SRR037912(GSM510449)
newborn_rep5. (total RNA)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR077865(GSM637802)
18-30 nt small RNAs. (liver)		Ago2IP504(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		mjTestesKO5()
Testes Data. (Zcchc11 testes)		SRR037906(GSM510442)
brain_rep3. (brain)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		SRR306544(GSM750587)
19-24nt. (ago2 brain)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		SRR306528(GSM750571)
19-24nt. (ago2 brain)
..........................................................TGGATATGTGGTGGGCAGT............................................................................................................................................................................. 191.000.00---------------------------------------------------------------------------------------------------------1.00------------------------
........................................................................................................................................................................................GACCCTGGTCCCTCATATG............................................... 191.000.00---------------------------------------------------------------------------------------------------------------------1.00------------
.......................................................................................................................................................GTAGATCTGCCTGTGAGAG................................................................................ 191.000.00------------------------------------------------------------------------------------1.00---------------------------------------------
........................................................................................................................................................................................GACCCTGGTCCCTCAGA................................................. 171.000.00-------------------------------1.00--------------------------------------------------------------------------------------------------